LOCUS       DAPIWV010000001        37246 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.001, whole genome shotgun sequence.
ACCESSION   DAPIWV010000001 DAPIWV010000000
VERSION     DAPIWV010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 37246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37246
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.001"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            67..738
                     /locus_tag="RJ272_000001"
     CDS             67..738
                     /locus_tag="RJ272_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7381143.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            735..1970
                     /locus_tag="RJ272_000002"
     CDS             735..1970
                     /locus_tag="RJ272_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7381144.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1970..2542
                     /gene="recR"
                     /locus_tag="RJ272_000003"
     CDS             1970..2542
                     /gene="recR"
                     /locus_tag="RJ272_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDV7381145.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2539..3075)
                     /locus_tag="RJ272_000004"
     CDS             complement(2539..3075)
                     /locus_tag="RJ272_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HDV7381146.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(3072..3764)
                     /gene="cybH"
                     /locus_tag="RJ272_000005"
     CDS             complement(3072..3764)
                     /gene="cybH"
                     /locus_tag="RJ272_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HDV7381147.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(3775..5490)
                     /locus_tag="RJ272_000006"
     CDS             complement(3775..5490)
                     /locus_tag="RJ272_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HDV7381148.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNHVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5493..6632)
                     /locus_tag="RJ272_000007"
     CDS             complement(5493..6632)
                     /locus_tag="RJ272_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7381149.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6752..8593)
                     /gene="mnmC"
                     /locus_tag="RJ272_000008"
     CDS             complement(6752..8593)
                     /gene="mnmC"
                     /locus_tag="RJ272_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDV7381150.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETIPSKRPKKLFYITVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNLQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEKYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8590..10569)
                     /locus_tag="RJ272_000009"
     CDS             complement(8590..10569)
                     /locus_tag="RJ272_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDV7381151.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGSKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTGQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10569..11660)
                     /locus_tag="RJ272_000010"
     CDS             complement(10569..11660)
                     /locus_tag="RJ272_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDV7381152.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(11657..12862)
                     /locus_tag="RJ272_000011"
     CDS             complement(11657..12862)
                     /locus_tag="RJ272_000011"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDV7381153.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDKIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12874..15069)
                     /locus_tag="RJ272_000012"
     CDS             complement(12874..15069)
                     /locus_tag="RJ272_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HDV7381154.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LESAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(15053..15277)
                     /locus_tag="RJ272_000013"
     CDS             complement(15053..15277)
                     /locus_tag="RJ272_000013"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDV7381155.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKFADIALYEIAENKITLEGLVETNR"
     gene            complement(15288..16007)
                     /locus_tag="RJ272_000014"
     CDS             complement(15288..16007)
                     /locus_tag="RJ272_000014"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDV7381156.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(16059..17252)
                     /locus_tag="RJ272_000015"
     CDS             complement(16059..17252)
                     /locus_tag="RJ272_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7381157.1"
                     /translation="MRKNILIFFCFFLFVGISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLASQNEDLLKSKSN
                     MESKLISLMAKDFAYDLPIPQGYIESEESFVAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINDSLKDYNAQLVKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQQIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17249..18055)
                     /locus_tag="RJ272_000016"
     CDS             complement(17249..18055)
                     /locus_tag="RJ272_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7381158.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNLIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(18042..18707)
                     /locus_tag="RJ272_000017"
     CDS             complement(18042..18707)
                     /locus_tag="RJ272_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381159.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18777..19955)
                     /gene="trmB"
                     /locus_tag="RJ272_000018"
     CDS             complement(18777..19955)
                     /gene="trmB"
                     /locus_tag="RJ272_000018"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDV7381160.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLTKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKAQFKI
                     "
     gene            complement(19955..21190)
                     /locus_tag="RJ272_000019"
     CDS             complement(19955..21190)
                     /locus_tag="RJ272_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HDV7381161.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKNLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDSKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDARAVEYEIRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(21135..22103)
                     /locus_tag="RJ272_000020"
     CDS             complement(21135..22103)
                     /locus_tag="RJ272_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7381162.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKFCDEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDGLYGYNGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            22181..23281
                     /locus_tag="RJ272_000021"
     CDS             22181..23281
                     /locus_tag="RJ272_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDV7381163.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23335..23411
                     /locus_tag="RJ272_000022"
     tRNA            23335..23411
                     /locus_tag="RJ272_000022"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23369..23371,aa:Ile,seq:cat)
     gene            complement(23520..23595)
                     /locus_tag="RJ272_000023"
     tRNA            complement(23520..23595)
                     /locus_tag="RJ272_000023"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23560..23562),aa:Phe,seq:gaa)
     gene            23750..25093
                     /locus_tag="RJ272_000024"
     CDS             23750..25093
                     /locus_tag="RJ272_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDV7381164.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLAMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKIVVVASIFLILSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25104..25754
                     /locus_tag="RJ272_000025"
     CDS             25104..25754
                     /locus_tag="RJ272_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HDV7381165.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25751..26422)
                     /locus_tag="RJ272_000026"
     CDS             complement(25751..26422)
                     /locus_tag="RJ272_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HDV7381166.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGFKASMEHKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTLNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26428..27054)
                     /gene="upp"
                     /locus_tag="RJ272_000027"
     CDS             complement(26428..27054)
                     /gene="upp"
                     /locus_tag="RJ272_000027"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDV7381167.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEVCNFLKSQGVKKIKFISIL
                     AALQGLQKFSQTHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(27051..28286)
                     /locus_tag="RJ272_000028"
     CDS             complement(27051..28286)
                     /locus_tag="RJ272_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7381168.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSVEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKDVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDTIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(28288..29679)
                     /locus_tag="RJ272_000029"
     CDS             complement(28288..29679)
                     /locus_tag="RJ272_000029"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7381169.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNVKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            29744..30559
                     /gene="salC"
                     /locus_tag="RJ272_000030"
     CDS             29744..30559
                     /gene="salC"
                     /locus_tag="RJ272_000030"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HDV7381170.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLTQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(30596..31927)
                     /locus_tag="RJ272_000031"
     CDS             complement(30596..31927)
                     /locus_tag="RJ272_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDV7381171.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(31929..32384)
                     /gene="accB"
                     /locus_tag="RJ272_000032"
     CDS             complement(31929..32384)
                     /gene="accB"
                     /locus_tag="RJ272_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDV7381172.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            32532..33092
                     /locus_tag="RJ272_000033"
     CDS             32532..33092
                     /locus_tag="RJ272_000033"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDV7381173.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            33141..34145
                     /gene="pseB"
                     /locus_tag="RJ272_000034"
     CDS             33141..34145
                     /gene="pseB"
                     /locus_tag="RJ272_000034"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HDV7381174.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            34147..35277
                     /gene="pseC"
                     /locus_tag="RJ272_000035"
     CDS             34147..35277
                     /gene="pseC"
                     /locus_tag="RJ272_000035"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HDV7381175.1"
                     /translation="MLTYSHQNIDQSDIDTLTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNKELITKIKLLRSHGIIKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGVGVQVHYKPTYEFSFYKKLLGEIKLRN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            35298..35612
                     /locus_tag="RJ272_000036"
     CDS             35298..35612
                     /locus_tag="RJ272_000036"
                     /inference="COORDINATES: protein motif:HMM:NF027579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HDV7381176.1"
                     /translation="MLAKLERLCNKLACELFPIPRSITGQGFRDSLEILNKTLGGGGI
                     LKFHSIKSGTKVFDWIVPDEWNVKEAYIITSEGEKICDFKKHNLHLLNYSEAIDKEIE
                     LE"
     gene            35643..36580
                     /locus_tag="RJ272_000037"
                     /pseudo
     CDS             35643..36580
                     /locus_tag="RJ272_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            36577..>37246
                     /locus_tag="RJ272_000038"
     CDS             36577..>37246
                     /locus_tag="RJ272_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HDV7381177.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNKYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLAKENGKYIIFGLNEGHA
                     LVHYAEEKNTTFCRYFKNFKGILINEKRKEKTITIDYYVRDLQQSYLCDINKINPIIQ
                     ETQNY"
BASE COUNT        12429 a         6663 c         5110 g        13044 t
ORIGIN      
        1 atcaaatttt aaataaaatt atgtaaagat tttaaagact acataaaaat ttacaaggac
       61 actagaatga ttaatgtgtt gatgatagaa gatgatcctg actttgcaca attattatct
      121 gaatatttag cgcaatttaa tattaaaatc acaaattttg aaaatcctaa aagtgcttta
      181 aatgtgggta ttcaaggcta tgattgtctg attttagatt taactttacc tggaattgat
      241 ggtcttgaag tttgtagaga aatccgacaa aaaagcaata ttcctattat catctcatcg
      301 gctagaggtg acttaagcga taaagttgtg gggcttcaaa tcggtgctga tgattatcta
      361 ccaaagcctt acgatccaaa agaaatgtat gcaaggatta tgagtcttat tcgtcgcaca
      421 aaaagagttg aacacactaa taatgaaaat attaactctg ctttcaaaat tgatgaaaga
      481 agacatgaga tcacctatga agataaggtt ttaacactta ctcctgctga atttgaaatt
      541 ttagaatacc ttatccaaca acacggatat agtgtttcaa gagaacagct tgtaagtcgc
      601 tgtaaaaatc taaaagataa agattctaaa agccttgatg ttatcatcgg tcgcttaagg
      661 gtaaaaatag gagatagttc aaaatctcca aaacatattt tttctgttag aggtatagga
      721 tataaactga taggatgaca aaaaattatt ctattcatac caaactgatt attttatttg
      781 ttgttacttt tttcttggtt tgtgtgcttt ttatcgttct tttaaaaata gaagggaata
      841 cctataatga agaagaaagt ttaaaacaag aaaatcttat aaaaaattta ctcatctcct
      901 atgaaaacac ttcaggtgtt gaaataggag cttatcttgg aaacagcggt tttaacgcta
      961 tacaaaatcc caatcttgta aaagctataa gaaataatgg acaatcactt tttaaagcag
     1021 gcggagagct ttgtactctt tcttctttaa aatatcatag caatctttat tttgatgttc
     1081 aatgtaaaga ttttgatggc ttgtatgaag aaaatactag tgatagggtt tataatcttt
     1141 tattgatagg atttttctct ttttctttgt tggttgtttt tatgtatttt tctgtattaa
     1201 aatccttaga acctttaaaa aaattaagaa gacaagttgc cgaagttgca aatggggaac
     1261 aacctgattt tctagactat caagaagatg aagtaggcaa gatcgccttt gaatttcaaa
     1321 aagctttcaa gaaaaaccaa gaattaatcc aatcaagaca acttttccta agaacaatca
     1381 tgcatgagtt aaaaacccct ataggaaaag ggagaatcat ttctgaaatg atcaaagaag
     1441 acagacaaaa agaaagactt atcgctatat ttttacgcat ggattctttg atcaatgaat
     1501 ttgccaaaat cgaaaattta ttttcaaaaa actacaactt acactttaaa cctagtcgtt
     1561 ttagcgctat acttgaagaa gctaaagaac accttatgat agatgatttt aataaagttg
     1621 taaaagtcga tataagatat gacgctttaa tcaatgttga tatggaaatt ttctctgtaa
     1681 ttttaaaaaa tcttatcgat aatgccttaa aatactcaaa caatggcact tgtgagcttt
     1741 tttgttgtaa agaatgtttt accattaaaa atccaggcaa acctttagca gaacctatag
     1801 agcattatct tgaagctttt acaagagaaa aacacaatca agtcaaaggt atgggactag
     1861 gactttatat agtttcagag gtatgtaaac tgcataattt tgatttgatt tatttttatg
     1921 atgatggaaa gcattgcttt aaaattttct ttggagataa agaaaaataa tggtaaaagg
     1981 cctggaaaaa ttcaatgaac ttgttgaaag ttttgcaaat ttacctacca taggaaaaaa
     2041 aaccgccata aggcttgctt atcacctttg tataaataat caaatcgatg gtatgaaact
     2101 cgcacacaat atagaaaatg ctatccgctt tataaaacct tgtgagcaat gcggtgcttt
     2161 aagcgaaaat gagctttgcg aaatttgtag cgatgaagaa agaaataaaa acattttatg
     2221 tatagttgaa agcccaaaag atatactaac actcgaagag agtcaaagtt acaatgggct
     2281 atattttgtt ttagatgagt taaatgaaga aaaacttgaa aaactaaagc aaatcatact
     2341 taagctaaat atctctgagc tcatttttgc attgacacat agcattaatt ctgatgcaac
     2401 tatctttttt atagaggata aatttaaagg cttaaaccta acttttagta aaatcgctca
     2461 aggaattcca agtggtgtaa atttagaaaa tgtggattta atctctttaa ataaagctat
     2521 gaattttaga acaaaaattt agtaattttt ataagaaata tcggctaatt cttgcaaaga
     2581 aaaatccgca atcttttcat aagtaaaacc ttccttgctt aaaaagtcaa gtaaagtttt
     2641 ttccatgatt ttagctcctt gtataagctc atctgagagc ttaaaactca tcgcttcaat
     2701 acgctttggc acacaagcta agatatgtgt tttaggcaaa tctcctgcaa gttccatgta
     2761 ttgtaaggtt tgaagcattt ctatttcatg ggcacttcca ctccagctaa ttttattagg
     2821 catagcatca taaggaaaga aaaatacatc tcctatactc gcaccttgcg cttctataca
     2881 gtctaaaacg ataagtctat cgtacctagc aatgatatag ctaagctgca aagccaaagt
     2941 tccaccatca acaaaatcta aagtaaattc agaatgagtg aatttgtagt ttttttcaag
     3001 ttgtttgcaa agatgaacgc ctaagccttc atccgcaaac atgatattac ctattccaag
     3061 gactaagaat ttcaatgctt ttcttctttt acaaatttat atccgctaat aatagcatcc
     3121 atagcaccat ctttaccttt tactgcgtta aaaatcgcca tgtaaatatg tactggcaca
     3181 aaaatcataa ttacccacat caaaattcta tgataagttc ttacatcggc caaaccgccc
     3241 attgcagctt caagcggtct taaaatatga tataaaagcc cacctaagcc ctcatggtaa
     3301 gtatgagtat aaagaataag ccctgtaaga atgataccta atatcacaag ataaaagaaa
     3361 aaataagtta caaattgcaa aggattataa acccctttta aatgcggatg ttttcctaag
     3421 aaaatgtaaa attttacttg ttctatccat aatttgatat taaaaatatc ccatacactt
     3481 ctgcgttctt ttgcgcttac cttatcgcag aaaaacaaat atactttaaa aataatacaa
     3541 gcgattaaaa caaaacccac cgcttgatgt actaagcggt attttgcttg cataaaattt
     3601 acgggttcac cgttactaat agggctttgg aacacatagg aaagataata ccctgtgcca
     3661 ataagaatca ctatagcaat agctcttacc cagtgcgtta aacgcaaacc tatgctaaat
     3721 tcatattcag cttttctttg caatttttct tctttgtttt gcatgaaagc ctccttataa
     3781 attgacattc actttatatt cacttagatt attgccctta gtatccatta catgcaccgc
     3841 acaagcaata caaggatcat aagagtgaat ttttctaatg atttcaagtg gttgttttac
     3901 atcagcgatt ttaagtccta tcaaacattg ctcataactt ccgcctacgc catttgcgtc
     3961 ttttggactt gcattccaag tagaaggcac cacagcttgc caattttcaa taacaccatt
     4021 tttaattcta caccaatggc ttaatgttcc gcgtggcaca tgccccatat agcgtccttt
     4081 gtattcttta gaattatcga tcacataagg agcacaagta ctctggtcta cttttaaatt
     4141 ttcaactaaa ttattaaacg cttttaaagc attgtttgca acgatttttg cttcaataca
     4201 acgagcagct gttcttccaa gtgtactaaa tacagcattt aaaggaagtc ctgtttcttt
     4261 taagaactca tctactacag gaacaacatt ttgattacct ttagcataat ttacaacgat
     4321 atttgctaaa ggtcctactt gcatagggtt tccttcatag cgtggagctt taatccaact
     4381 atatttaccc ttagtatcaa acactttaga atgaacatga tttccatgat gatctacgct
     4441 ttccccatct acaagtcctg tataatttgg atttgttttg ccgtcataag gatgtaaagg
     4501 ttcattgtct gcataccaag aatgagttgc ctcttcagta atcttatctt cttctacttc
     4561 ataaaccttg cttaaatctc catttttgat aataccactt tcaaaaagcc attcatctct
     4621 tccgatttga aattctttaa aggtgtaaag attatttacc cctatatcat ttaaaacact
     4681 tgcttcatgt gcataagctt ttcctgccat cacaagatca ggataatacg cacgattaac
     4741 aaagtcttgc acttcttgga atttaaccat atattcaccc attcttgcag gatcaagtaa
     4801 atccataacg caagttacac caccaacggt taagctttgt ggatgtgggt ttttagctcc
     4861 aaaaatcgcc atacattgag caatgattct ttgaattctt aaacattcta gatagtgaga
     4921 aagaacgatt aaattttgct caggagttaa acgataagtt ggatgaccat agtacgcatt
     4981 agcaaaaggt cctaaatttc ctttatctac aaaagtttta agtctttgtt gcacttcaag
     5041 aagtttatct gcacctgttg cataaggatt tgaagtgtat ttaaaagctt catcgcttgc
     5101 ttttttaaca tcagcactta aagcacttac cacatcagcc caatcaagcc catgaagttg
     5161 ataaaaatgc acaatatgat cgtgtaaaaa taaagccgca ttcattaaag ttcttgttaa
     5221 aagcgcattt aaaggcggag taatacctaa agcattttca acagcaacta tacctgcttt
     5281 ataatgtgaa aaagtacaaa ctccgcaaat tctttgcgtc ataaaacccg catctcttgg
     5341 atcacgccct tttactatgg tttcaatacc acgccacaaa gtagagcccg cataagcttc
     5401 ttttaccaca ttgttatcat caacaacaac ctcaactctt aaatgccctt caattcttgt
     5461 aataggatct acgattattt tttgactcat ttttattcct tatctttttg catggaagat
     5521 ataactgcgt gtgctgctat agcaacgcct gtgagtgtaa gcacacctat accaatttta
     5581 tctgaaacac tatccgcacc caaaccaaaa acagtatcaa atttacgact agccataggc
     5641 tcttcaaaag gtcccatagt atcccaaaaa ttaggctcag aacaacctat acaaccatgc
     5701 cctgcttgaa taggccaaga agtgtgctgg ttaaatctct ctcttgagca gttattaaaa
     5761 gtataaggtc ctttacaacc tactttataa agacaaaaac cttgttttgc tccttcatct
     5821 ccaaaagcat gtacaaattc acccgcatca aaatgtccgc gtctttcaca aagatcatga
     5881 attcttaaac cataagccca ttttggtcta ttatacacat caagtgctgg taactcacca
     5941 aataataaat aatgaagtac attacccact atattttttt cacttggagg acagcctgga
     6001 acattgatca cagttttact tgttactttg cttaaaggct gcgcgttgct aggatttggt
     6061 cttgcggctt gaattcctcc aaagctagaa caggttccta tagcaaaaat cgccaaagca
     6121 ttttcacttg ccatttttga aagctcatag cctgtttttc catgtgcacc tatggttaaa
     6181 aaatgctccg tatcacccat agggatacca ccttcaacca ttaaaatgta tttattttta
     6241 tgcttttgaa tggcattttc taaattttct tcagcttgcc aacctgctgc agccatcact
     6301 gtttcgtgat attctaaaga aatataatca aaaatcaaac tatcaatcgt tggagtatca
     6361 cttcttaaca aactctcact acagcctgta cactcagcca tatgaagcca cacaacagga
     6421 agcctatcag caagctcagc agcttttgcc accataggag taaaactcgc tggcaaagcc
     6481 aaaaatgccg tcatagcacc tgcccatttc ataaaatccc ttctagaaaa acctgacttt
     6541 tctaatgctt ttgtaatact atcattgtct ttcaaagaag gaagtttttc aagagtcgat
     6601 aaacgcgact ctatttgatg ataatcaatc attatatttc ctttgtaaca tgaaatttat
     6661 tctctataat aataaaataa aggaagttaa aataaagtta aaaacttact atcataagca
     6721 aatattagca tcactcttaa ttaaagctta atcataagcc ttttttaagt ttgcgaatca
     6781 aaaatcttgc aggatgaata gcgtggatgt attttttttc taaacacaag ggttcattat
     6841 ttatcaatgc acacaaatac cttgccgcta aaacacttgt actaaaaccc cttgacccat
     6901 gagcaaaatt aaaatacaaa ttacaagaca ttttagctgg tttttgctcc ttattttttg
     6961 tccataataa agctttatat ttttctttat aaaacgcttc atcataagca tttccaacta
     7021 tcataaagcg atcactcgaa taagatctaa aacctacttt agaacctatg atttctaatt
     7081 ttgtattttt atccataaaa tcggctatat tttctatatt ttgtttatca tcttcttctt
     7141 ttgattctaa acttgcatta agcctatcat aacttgcacc aattacttgc aaatcatctt
     7201 ttacagggca aatataagcc ttagaagata aaggaaatgg ggtatctaaa aaaggtttta
     7261 gatgtgtaac ttgacctctt actttgctta atttcatctc atcataaaaa acaaagtctt
     7321 ttgcatctgc acccatagca taaatcaaaa ccgcataatc acttttaaca acatcatttt
     7381 taaattttaa actaaaacac ccattttcaa atttataagc ttgaaattca tgattaaaat
     7441 atatacaagc tttgcttttt tcaaaaagat ttttaaccaa tttttttgga aaaatcactc
     7501 caccctcttc taaaaaagct tgattttttg aaattttaaa caaaacattt tctctttgcg
     7561 tgtcaaatct ttcttgcatt aaatcattat gtgcaaactc caccacaccc ttaaattcta
     7621 aatctaaaat ttgtctataa aaacgacttg cctctataaa agaaagctct gaaaactccc
     7681 ctaaatttac cttaggcttt aagattaaag agcttaaaat tccactttca tttccacttg
     7741 cacccttgcc taattctaaa tgtttttcaa aaatatctat ttcaaaacct cttaaactaa
     7801 gctcataagc taaaacagca cttgatatac ctgcaccaat aatagctact tttttatttt
     7861 ttaaagatga aaatgttctt gaaaaatacg cttctttgtc tttaaactca agctcatttt
     7921 ccaaataagc tttaatcatt tctctttttc taaaaccttt ggttttttct actctaaaac
     7981 catatttttt taaatttttt tgcaaaaaac ttgccgaaga aaaggtgcaa atttgtgtat
     8041 tttttttaga aagtcttgcc acttcaaaga ttaaattttc atcaaacatt tgcaagtttt
     8101 tatttggaga aaatccatct aaataccaaa catcagcttt aaaatccaat tcttttaaaa
     8161 cagctatatc ttcaaaaaca agatctaaaa aacaatcttc aaaataaaaa cgataaattc
     8221 cttctttagc cttaggataa aattttaaaa attgttctaa aagctcttta aactcttcat
     8281 aaaattctag tttttgataa atttctctta attgttcttt ttcgatataa aaagcttcta
     8341 cggtaatata aaaaagtttt ttaggacgct tagaagggat agtttctaaa aagcgtttca
     8401 aagtaagaaa aaaatttaaa cctataccaa aaccactctc tgcgataata aaattttctt
     8461 gatttttcca ttcaaaagaa tgagtgtaaa caaatttgct ttcatttaag ccatctttgg
     8521 aattaaaata aaaatcatca aaatccaaag aaaaaggagt attatcctta aaaattagct
     8581 tagctttttt catcggttgt tataaaaata actctcaact ccatcggcaa tacccttaac
     8641 caataaatct tgaaaagctt tattggcgat tcttttgcct tcatttggat gtgtaatata
     8701 gccaatttca atcaaaattg caggcatttg cgcacctact aaaacccaaa aaggtgcttc
     8761 tcttacaccg ccatctacaa ttttatactt tttgcgtgtt tgagtgagta tatttttttg
     8821 tacatcaatg gctagtttat ttgaagcaac gattttttca cgatttaaga aatttaaaat
     8881 actttgtttt gagaaataat taatctcttc aaaatcccct tgattttctt tttctgctgc
     8941 ctttttactt ctttcacttc ttgcaggact taaaaagaaa gtttccacgc cttcgctact
     9001 tttggctttt gtggcatttg gtgctgcgtt agcatgtata gaaataaaca aatccgctct
     9061 tttatcattg gcatatttgg ttctatcacg aagattgata aatttatccg aacttctagt
     9121 ataaagcact ttataaccgc gttttttaag ttcatttcca agttttaaag ccgtacttaa
     9181 aactatatct ttttctttta aacttccttt tttatcactt aaagcaccgc tatcttttcc
     9241 accatgcccc gcatcgataa ccacaagctt tcctgatttg taatttgtat ttaaagtttt
     9301 actagaactt tgagttgctt ttttgtttgc attttgattt gtagtttgta tataaaaacc
     9361 taaagtgaga ttattattat ccaactcctt taaaagttta aattctttag gagcactcaa
     9421 aaccacacga acggtttttg gattgtattg agtaactgta atcacatttt gtccaaaagt
     9481 aaagcttttt ctattacctt ctaacacacc cttaaaactt acaacatatc ggaatttttg
     9541 atctttggta tcaaatactg ctatttcttt ttcatctaaa tcatcgctta aatttaacac
     9601 cacagcatta gaaattttat ccacatctaa aacatataaa ggttcttgat tttctttttc
     9661 attattggtt tttttatctt gtttttttgt ttctaaaact ttggttttaa tttctgtttt
     9721 ttgatcttgc tttttctctg aaattttact aacttgccca gtcttttttt ggctagtagt
     9781 ttcttttgaa aaaattattt tttcttcttt aaaagatata tcaataggaa ttttttcttt
     9841 agcataaacc actatgcgta tggttttggg attaaattgt gaaatcacta aacgatagtc
     9901 atcaaattta aactcttttt tactcccttc taaaacccca tcaaaatcac taataaaacg
     9961 atagtttcct ttttcgtcta aagcaaaact ttttaattga tccttatcca aatctgcatt
    10021 tagttcaaac tctacacctt ggtttgtttt acttgacttt aaaacataaa ttttatcatc
    10081 gctttttgct ttagaaacga tactgctctt tggtgcttgc gaagttttag aatttgtttt
    10141 ttctgtattt tttatttgtt cgttagatga ttttttttca tttttttgaa ctgtttttat
    10201 aggttcaaaa gttgattttt cagtgtcttg agaaatattt tgaaccttaa tatctttaat
    10261 aacagccttt cttaaagcat taatacttgc ttcacttata ccactttctt ttaactcatt
    10321 agcatatgac ttgtcatcta aatttaaagt atttgaactg atgatcaatc tttttaaaat
    10381 ttcaatttta gttttttcat cttcatgaat aacactttgt atataaaggc ttttgagctg
    10441 atggtgaaat tttacttgca cttcactttt agaaccgata aaatttttat caaaatttgc
    10501 aagttcattt tcataagctc caaaaagagt tgtgaaagca aacactaaaa atacaaaaat
    10561 tttagccatt attcaccatt aaccaatttt tccataagtt ctttaacact gataagctta
    10621 tctaaacgat atccatttgc acctgtaaag aaaagtcctg tttctttttt gcctgaccac
    10681 gcatcaaaaa gcctatctgc tatacaatac cctactttag tcgcctcttt tccacgtcca
    10741 caaggcgcta cacaattgct tatacaatta atctttggac ccattctttt atctaccaaa
    10801 tttaaaagat tggttctaac tccacgagca ggatagccca caggagattt aataagctct
    10861 atatcttctt ctttagaagc tagcaaaacg cttttaaact cttcactcgc atcacattca
    10921 aaagttccta tgaaacgcgt tcccatttga acaccactag cccctaaaga aatagcattt
    10981 tctatatctt ttttatccca aattccacct gcagcaatca cgggaaaaga cccccaattt
    11041 ttagcctctt ctaccacagg agcgattaat ttttctagct gataatttgg atctaaacac
    11101 tgctcataag taaaaccttg atgacctcca ctttttggcc cttctaaaac cactgcatca
    11161 ggcaagcgat tgtaacggct ttgccatctt ttgcaaataa tttttaaagc ctttgcagat
    11221 gaaatgatag gcactaaagc cacatcagga aaatctgcag taaattcagg taaatttgta
    11281 ggaagtccag cacctgaaac aatcacatta aaaccaacct cacaagcatc gcgtgctatt
    11341 cttgcataat cattacttgc acataagata ttacacccca aaggtgcatc gccacaaact
    11401 tttcttgcat tattaatcaa agcttgcaaa cccttgcgtg agtaaaaatt ttcacttcca
    11461 taaggcttag catttaattc tttacttgca tactttcttt cttcataata tcctgttccc
    11521 acagaagaaa taatcccaag tccaccattt aaagaaactg cagaagctaa tctatcccag
    11581 cttatgccta gtcccattcc cccttgaaaa atgggatatt ttatagtatg ttttcctatt
    11641 tgtaagggtt gtaaattcat tcttttacct ttaattttgc aaattttctt ttacctattt
    11701 gtaagatgta ttctccttgt tctaaataca tttgctcgtc gctaactttt tgagaattta
    11761 cacttactgc attagcactg atgcttcttc ttgccgcaga agtagaactt tccaaaccac
    11821 attcaaccaa agccttagca agccaaattt ttccttgtat ttcaaactca gccatatcac
    11881 ttggcaaagc attttgagaa tgaattttat caaattcaga cttagcatta ttagcctctt
    11941 ctttggagtg aaaacgctct gtaatctcta aagctaaatt ttctttagct tttttaggat
    12001 gtaaattgcc ttgttctata tcttttttta tttgcgcaat ttcttctaga cttttttgac
    12061 ttaaaagttc ataatatcta aacatcaatt catcactaat acttaaaatt ttagcataca
    12121 tatcattagc tttttctgta acaccaatgt aattatttaa actcttactc attttgttta
    12181 caccgtctaa accttcgagt aaaggcatca taatcacagc ttgttctttt cctatgttat
    12241 aaactctttg aagctgtctt cccatcaaaa gattaaattt ttgatccgtt ccacccattt
    12301 caatatcgct ttttaaagcc acactatcat atccttgaag taagggatat aaaaactcac
    12361 aaatcgaaat aggactttgc tctttaaatc tcttggtaaa atcgtcacgc tcaagcattc
    12421 tagctacact aaaagttgaa gtaagctcta ctatacccgc ggctccaagt tcattaagcc
    12481 aagtagaatt aaacttaatc tgtgtttttt ctttatccaa aaccttaaaa acctgcgttt
    12541 cataagtttt agcattgatt aaaacttgct ctttatccag ctttttacgc gttgcacttt
    12601 ttccacttgg atcgccaatt tgtcctgtaa aatctccaat caaaaactgc acaatagctc
    12661 catgtttttg caaaaaagcc atttttgtta aaaccacgct atggcctaaa tgtaaatcag
    12721 gcgctgtagg atcaaaccct gcctttataa agaaattttc acccttttca taataatttt
    12781 taattaaatt ttctattctt tcttcatcaa taagctctgc acaaccacgc ttaacttctg
    12841 ctaatatttt ttttatatcc ataataaacc tttttaacct tctttataag catcatttaa
    12901 agatgtaaaa tctaaaattt tacaacgaga ttttaaccta tccttgacac tatctggatt
    12961 gatattatca ggaatttcca ttgtaatctc aaaataatct accgccgaat ttaaatcact
    13021 tgataaatta attgttaata aatttatctg cattttagct aaaaatgcca aaaattccgc
    13081 taaaacacct tttttatttt ccaaagaaaa aatcaattta taagatttag ggatgttaga
    13141 atcccatttt ataaatacca tatcttgatt attatctatc attttatcag ctctatcgca
    13201 aagcttatga tggacaatag cgttaccacc tttaacaaaa gctaaaacag catcgcctct
    13261 ttttggatgg cagcaaaaat caaaatccac attagcgatt ttatggttac aatatagagt
    13321 aaaatttcct attttttgtt ctttaatctc atatttatca aaccaatatg acttcttggc
    13381 gtatttttta agaccattaa ctatatcttt caaataagca ctatctgttg ctacttgtct
    13441 aatacgtctg gctaaatttt ctttttctat ccaagtttca attctgtttt tatcaactcc
    13501 aaaaataaaa cttaacatat taatagaact tgctagatta atctctctga ttttttgctt
    13561 acaaaattcc cttatacttg cttttgcttt tcctgtttta acactatcta tccaagaaca
    13621 gcgataaaat ttatcattgc tagtaaccac tcgcacaata tcgccatttt taagctcggt
    13681 taacaaaggc actttaatac gatttacata agcacttttt gcatgaagcc ctactttggt
    13741 atgcacttca taagcaaaat caagaaccgt tgcaccacga ggcaaagtga aaatttctcc
    13801 cttaggagaa taaactgcga catcttcaac ataaagacta tctttagcat attcataaag
    13861 ttcaatagca ttataatctt ctgcactttc aagattgttt atactttgca ttgaaatatc
    13921 tgtaagccaa tcaagacgag gcgcaaccac actgccatct tctttatatt tccaatgcgc
    13981 tgctatacca aattccgcaa ttttatgcat atcaaaagtt cgaatttgtg cttctataat
    14041 acttttagca tcaaaaagtg tggtatgtat ggtttgataa ccattttgtt taggcaaggc
    14101 tatataatcc ttaaaacgcg aaaccaaggg attaaaatgt gtatgtaaaa ttcccaaagc
    14161 taaataacaa tcacttactt tttcaaccaa aattcttacc ccaagcaaat caagaacttc
    14221 ttcaatacca atgccttttc tttgcatttt aagataaata gaatagctat gtttaatgcg
    14281 tttttgaatt tcaaaactac cttgtctaaa gccattgctc aaaaataaaa gttcgatttt
    14341 ggaaataaat tcatttaaac ctaattgcat ttcttgatta ttggagttga tataattgtc
    14401 aataagctta tactcatctg gcataagata tttaaaacta agatcttcca aataattttt
    14461 tatgcttgaa ataccaagtc tatgggctat tggggcatat acaactaaag tttcttcgct
    14521 gattcttttt tgcttatctt ctcttagaat atcaagagta agcatattat gcagcctatc
    14581 gcataacttc acaatcaaaa ccccaacatc ttcaatactt gctaaaagca tatttctgaa
    14641 agtcaaggct gatttagtta aacttttttt agattttgat gaaatgagat tatcttctct
    14701 aatttctata attttagtaa gccctaaaac aagttttaaa acctcagaac caaactgctc
    14761 tctaagttct tcttcagtac agtttgtatc ttcgatcaca tcatgcaata aagcagctaa
    14821 aatattgctt ttattttcac ttaaaaatcc aaccagtgtt gctactaaaa taggatgtac
    14881 cgcataaggc tctccacttt ttctaaactg cccttcatgg caaaatatac agtaatctac
    14941 cgctttttca agaatggcat catggccaca aatttcgaaa agcaaagcct tagcagcttc
    15001 taaatcttta caatttttta cattatcgat taattgttca agcaataatt cttcatcgat
    15061 tggtttcaac taaaccctct aaagtgattt tattttctgc aatttcatat aaagctatat
    15121 ctgcaaattt atttttattt ttatcaaagt ctaccaaagg ggttgctccg ttcgccaatt
    15181 gttccgctct ttttgctacc actaaagaaa ggcgatatct atcattaccc attttttcca
    15241 aagcttttgc cgctacttct tctattcttt tatccataat tttctcctta attattttta
    15301 acgattgaac aaaggctagt atcaccttgt atgattttaa gtaaattacc ctcttcaaac
    15361 atattacaaa ccacaatagg aagtttgtta tctttagcta aagctatagc tgtatcatcc
    15421 atcactttaa tattatcttg catagcctca tcataactta aagtatttaa aaatactgca
    15481 tcatcaaatt gttttggatc tttatcataa actccattaa cttttgtagc ttttattacc
    15541 atatctgcat caatttccac agctcttaaa atagctgttg tatctgtagt aaaataaggg
    15601 tttccagtac ctgcggcaaa aaccacaaca cgaccctttt ctaagtgtct ttgtgctctt
    15661 ctcataatat aagtttcaca aaatgcttcc atctgaatgg cactttgaac cctaacttca
    15721 agtccagagc tttccaaggc ttcttgtata gcaatagcat tgataaccgt agcaagcatc
    15781 cccatatgat ctccacttgt ccttttaatc aatccaccct tagcagcact tactccgcga
    15841 ataatattac caccgcctat aactatgcct acttctattt gattttttat aagttcttta
    15901 atctctgaag ctatgaattt taaaatagaa ttttctatac caaagccatt ttcacccgct
    15961 aaagcctctc ctgaaaattt tactaaaact ctttttctct cttgcattat ttctccttat
    16021 ttaacttgaa attatatttt aaattccatt aaatttagct aatttaagct aatgagttcc
    16081 aaaggattga tatgaaaatt tttttgagtt acttcaaaag taagatcatt ttttattcta
    16141 cccactacgg cacctttttt aatattctta ccaactttaa tattaggagc aatcttatct
    16201 aaatgtgcgt atattgtatg tatgccatta tcatgttcaa caataacaac tcgagctaac
    16261 atactagtat ctttagcaaa aactattttt ccatctagca catttttaac aactgcatcg
    16321 cttttattgc ttcttaaaac tacattctcg ttaaaaattt taagattgta aacaggatca
    16381 acataatttc caaatttttg cttcacagta aaagaatcca atggagctat ggtttttttt
    16441 cctgtgtaac gcttgactga acttccttga tagcttgaac ctaattgcct tatttgttga
    16501 ttatttttta ctattttagt atcatttttg tttaaatttg caccttcttt attattaata
    16561 atttttaatt gatttaatgt ttttctaagc tcttcttgct gagcttgtaa gtcatcgagt
    16621 ttttttgcat atatggttcg atctgttttt tgtttattaa tttcgctaat ttgtttttgt
    16681 tttaaacttt gaagcttgac taattgagca ttgtaatcct taagactatc attgattttc
    16741 ttaatctgag cttgtttatc atcaataagt ctgcttactc cctcataatc tttagaaatt
    16801 ttaaaaattt cttcatttaa aactttgttt aaactcccta aaatttcaaa agccacaaaa
    16861 ctttcttcac tttcgatata gccttgagga ataggtaaat cataggcaaa atctttagcc
    16921 atcaaagata taagcttact ttccatattt gatttacttt taagcaaatc ttcattttgg
    16981 cttgcaaggg tgtttaactc ttgattttga gccttagcac ttgcttcaag cttagaagtt
    17041 tgtgaattta agctttcaat ttgcaaactt aaatctttca aacttttttc accatttaaa
    17101 atatcactag ccaaatcttc aagtttttta tttagctgtt cttgtatgcg tttattttct
    17161 tctaaacttt ttgttttttc atttatagcg tttgctaaac ttataccaac aaacaaaaaa
    17221 aaacaaaaaa agataagaat attttttctc atcttttaac cttaaacata accgtattta
    17281 cacacaacaa gcaaataaac aaagtagcta aaaaaattaa agtcaaatgt aaaataaaat
    17341 taataggtgg aaaaataata tctacagcct ttaaactttc ttggataata gaaagatcaa
    17401 aaatttgggt aaaaaaggca agtaaaataa caaaagcaat aaaacaatca accacaacca
    17461 ccttataaag cataaaagat ctaaaccaaa acggagctcc aaataaacac ataatttcaa
    17521 tacgatcggt atgttcataa agccaaattc tcatctgttt taaaaacaaa acaaaggcaa
    17581 gtaaaataat gataaacaaa aataaccaaa aaacaaattt catcaaaata agcaaagagt
    17641 atatcttatc atgggttttg gaaaaagttt caaccttact aacacctaca atatttaaaa
    17701 gttgattttt aatcaaattt agttcatttt gatcgggtaa agaatttaat tttaaagtat
    17761 aaaattttgg cagagaatct tttaaaactt tcaaattctt ttcagaaaca tcatttttca
    17821 aacgatcaat taaatcctta ggatctaaag attcaagtcc agcaaaaaat ggtacttttg
    17881 tttttactac attctgatca agttcagttt tgctgacaac tataatatta taatctttat
    17941 taacaagttc ttcataatgc tttaaagttg catttgtaac caaaataaat tcaaaagcaa
    18001 acatcataaa aagcaaaggt aaaattaaag ataaatgtgt tttaaaaaat ttcattcatt
    18061 tttccatttt ctatattaaa acgacgataa tccactctta aattactagg aattctatgt
    18121 gttaccacta taacacaagt tcctaaaagc tctctagcag actttaaaag agtccatata
    18181 atatcagaag aatactcgtc caaatttccc gttggctcat cgcaaagcaa aagctttgga
    18241 ttatgagcta aagccctagc catagcgacg cgttgttgct caccaccgct aagttgatta
    18301 ggcaatttat ctgctttaaa agttaaattt acatgcttta aaagcttagt agcttgatca
    18361 tggcatactt ttttgctata acctttaatc attaaaggca acataacatt tttttcaaca
    18421 ctatattctt gtacaagttt ataatcttga aaaataatcc ctattctttg acgcaatttt
    18481 aaaagttcta aatttccaat tttattcatc aaagatccac atacttcaag cttaccagaa
    18541 ataggttcta aatctccata aaaagacttt aaaagcgtac tcttaccact cccactttta
    18601 cccgtaataa aaacaaaatc atcatcctta aaagcaaaac ttgcttcttt aataactagt
    18661 tcatcataac ctaaagtaag tttatttgct tggattaaat taggcatcct ttttccttaa
    18721 tttccctttt taaattttta aattatgctt tatttttgct taattttcaa gaaaaattat
    18781 attttaaact gagcttttaa aatttctttt aattcattta tcgctttaat attttcttga
    18841 attttaaatg gttctttaaa agcaaaatcg atcgttttat caagatgcaa ataacaatgt
    18901 tcaggcttat taaaagctcc aaaagcaacc tttaaaagca aattctcatc ttgtttatag
    18961 atgctttcaa aatgcaagaa aaaatcatct ttttttatag taatattttt aaagttctgc
    19021 tctatttttt tcaaatcctc tttagaaaat tcaaccgatg agagattaaa ttcatttaac
    19081 tcatagtttt tacactcttg gttaaaattc cacacccaaa gatcatatat atttttttct
    19141 tgctttttcc atctatcttc atatttgctt gaaatttcta aattttcatt ttttctaaga
    19201 ctaaattttg gagcaggaaa agttaaaaat tgttctagag taaaattaaa atactcaaaa
    19261 ctatctgttc taagctcaaa acgaccattt tgggttaaaa ccctagcaca ttctttgcaa
    19321 aaatctttcc caataactcg cctatgaggc tttttgtccc aaggaacagg gaaatgtaaa
    19381 aaaatctttt caactgattt tgattttaat acactcaata acaatctcgc atcactttgg
    19441 attagcaaaa tattatttac attttgtgct ttagcaagtt tagccacttg agttaaagct
    19501 gggttgtaaa tttccacccc taaaattaaa acatttggat tttcttttgc ttgataaagc
    19561 aaatgtcttc ctgatccaaa gcctatttct atataaattt taccttgaag tctagataaa
    19621 agctcatcaa aattatcaac gataaatggt gttttttcaa ttaaagcatt atttttaagt
    19681 ccaaaagctt cattgataat atcctcacaa aaaccttctt taaagatttt taaagccttt
    19741 tgcaaataac ctattttaga aggttttgta tgtttatcgc ctttaatcac aaaaccattt
    19801 tgtgcttttt taatctgcag aaaaaaactc tcttcttgaa cctttgtata aataagacta
    19861 acattatcat tcttagtaag ccaaagaaat tcaacatcat ccttactata aggcagattt
    19921 atttctttga tctttttact tttaaaattt ggcactactg agccgcctta actttgcttg
    19981 aaggttctga acgaagtcca gctgaatcaa tagcaataac ttcataacta tattccaccc
    20041 ctggtaaagc ttttacatct tttaatcgct tttctttaat gcctttaaaa actgcatttt
    20101 gctccccacc atagcgtctt atttcatact caacagctct agcatcatta tcactccatt
    20161 ctaaatttat cccttcactt gtgctttggg ccaaaataat actaggagcc aaagggttac
    20221 ccaaagtttt accttctaca ccatcttttg gcataggact ttcaagacca tctttatcga
    20281 ccattgttac tttataatac ttgcttttac ctgctccttc tactatatcc tcataagaat
    20341 ttttatcagt ctttgccaaa acactaaaag gaaggaaact tgagctcgta gaataaactt
    20401 tataataaga aaaatcttca tacgtaggag catcccaagt taaaatgatt ttattagaac
    20461 catctgtact agcacttaaa tgctcaactt gaggaggtaa agccttgctt gtagaactta
    20521 caacttgact tggctcactc tttatcccat taaaactcac agcaataatt ctataacttg
    20581 aattttcatt aggttttaaa tcactatcga tgtattcagc gtttaaacga ttttttactt
    20641 ctgcaatttt tttaaattct ttatcatcac ctttggttct ttcaataata taagaatcaa
    20701 ccctaaaatc aggatgcgga cgccaaataa gtttaatacg attaggcaaa ttagtcacag
    20761 cttgaacaaa aggaacagct tcaagtcttg gagctgtgct cacttctata accttgctat
    20821 cttctgaaat ttgtccttgt tcattaaagc ttttcatcat ataacgatac ttagtaccag
    20881 gctctaattt agtatctaca taatgagttt gaaacttatc tttaatagta cctacaagtt
    20941 taaaatcagg attttcatcg ctagaacgat acagataaaa tcctttgata ttttcattat
    21001 ataaaggttc ccattcaaaa gcaatgttac tcatatcact aagatttttt aaactttcaa
    21061 cctttggcaa gctctcattt acagcaggct ctttgcttga agctagcgaa ttcatttgcg
    21121 aaacactaca agcactaagc aaaagagtta aaaaactcaa gtaaaaactc aagcgaaatc
    21181 ttttcatcat tctctcctaa attaatttgt tcaaacataa tatttttaaa atcttccatc
    21241 aaaggtgctt taacaaaaat ttgctctttg gtttttggat ggataaaata caaaaaataa
    21301 gcatgtagca ttatcctgca atcatactta ccgttataac catacaaacc atcacccaaa
    21361 atatggcgat ttaaactagc taaatgcgct ctaatttgat gagttcttcc tgtgaaaagc
    21421 ttagcagcca tcaaagttaa gttttcagtt tttactacat ttataaaagc tgattttgcg
    21481 tttttactga atttattttc cttatctatg gctatttttt taatagcatt agaaggcgaa
    21541 cgcattaaaa atttttctac tataatttta tcttctttta gtggcaaatc aattaacgca
    21601 agataaattc ttcccatgct tttatctgca agctgttcgc ttaatttttg atgagtgaag
    21661 ttatttttcg ctattagtat agctccgctt gtatctttat ctaatctatg aacaagacca
    21721 gctcttatct ctcctcctaa atttgataaa gtatattttt tttctattaa ccaatccacc
    21781 aaagtggcat ttttaacgct acttgctcca tgaacgacta aatttgaagg tttatttaaa
    21841 acaagcaagt cttcatcttc gtataacaca tcaatatcaa aatccacttc aaactgaggt
    21901 tttatctcat cgcaaaactt taaacttgca atagaaataa tatcaccatt tttaagctta
    21961 aatgaatttt tatcttgaat tttatcatta acctgtacac aatctttttc tataagtaaa
    22021 gcaacttgat tgcgactttg gtttaatttt ttagccaaaa atacatcaag ccttgaattt
    22081 tcatctacta aaaaagtttg cattttttcc ttagaggttt tgataaattt aaaattttag
    22141 tttataatta tagctttata ttaccaactg aaggcaaatt ttgtttagat tagatagaag
    22201 aattttaact cattttgact atatgcaacc cattttattt ttacccataa ttcttatttc
    22261 atttttctta atctttgaag ctaatccttt tttagcagaa aaacagtttg tttatgcctg
    22321 tgtgggattg tttgctttta tggttttttt cttctttccc ataaggaaat ttatttggat
    22381 tattcctgtt gcttattgga ttaatatttt tttattgcta agcgtagata tttttggggt
    22441 tgaaaaatta ggtgctaaaa gatggcttga aattcctttt actcacttta ctatacaacc
    22501 ttctgaaatt tttaaaccta gttttatttt aatgcttgcc tatcttattt atcaaaatcc
    22561 tcctccaaaa aatggataca aacttaaaca attcatcaaa cttagctttt acatcatctt
    22621 gccttttttg ctaattgcaa aagaacctga tttaggaagt gctatggttt tactacttgt
    22681 tggttttgga gtgcttttta tcatgggagt tcattataaa atttggttaa gtattgttat
    22741 agctataagt gttagctctc ctattattta tacacatctt ttaaaaccct accaaaagca
    22801 aagaattcat gattttattt cagaaaaacc aagttatcaa gtagcccaat caatgatagc
    22861 tattggaaat ggtggtttaa ccggaaaatc tcaagatgaa gctacgcaaa ctcattttaa
    22921 atttttacct atttcaacta gtgattttat tttcgcttac atgatagaaa gatttggatt
    22981 tattggggga ttgacattaa ttatatttta tattttactt atttttcatc tacttagttt
    23041 aaattataaa cttaaagatg attattttgc tagagttgct attaattgtg ttgcattatt
    23101 tatttttatt tatgcggcag taaatatttc aatgactata ggttttgcac cagtagttgg
    23161 gatccctttg ccttttttta gttatggtgg aagttctttt actattttta tgattttttt
    23221 tggaatttta cagcatttaa tcacttttag atatttttgg acggatataa aggctaaata
    23281 aaatattttt aagcattaat aagatataat tttatctttt aattcaactt aggcggattt
    23341 atagctcagt tggttagagc aaccggctca taaccggttg gtcgcaggtt cgagtcctgc
    23401 taaatccacc attctacata taagctatag actctttctt taaaaaataa cttttagttc
    23461 tttaaatatt tcaatcttat ataaaaaaag tatgtgatgt gattttttga aagataaagt
    23521 ggtggttaga ggcagaatcg aactgccgac acgcagattt tcagtctgct gctctaccga
    23581 ctgagctatc caaccacaat gtttgataaa gtaaagtttg ataaagtaaa aatgtaattg
    23641 tatctttttt tctttaattt aagtttaaat acaaaaataa aattttattt cccttaaagt
    23701 tttaataaga tagaataccc gctttagatc attatcaaat ggaaattttt tgaaacaatt
    23761 tggactagat agacgaactt ttaaaatttt actagctggt tatattatta ttgcattgtt
    23821 tggggcttta ttgctacatt caagctgggc acatacaact cctattgatt ttttagatgc
    23881 cttttttaca agcacatctg ctgttagtat gacaggatta gtagttaaga acactgcggt
    23941 tgattttacc ttagcaggac aaattattat cttagctttg gtgcaaattg gaggcttggg
    24001 atatatgggt ataggtttat ttgtttatat actcatacgc aaaaaagttg gttttagtgc
    24061 aagaaattta ctaaaagagt ctttatttta tccatcaatg gatggtttat ttaaattttt
    24121 taaaaaggtt ttgctgttca tttttactat agaattgata ggtgctatac ttcttgccat
    24181 gcgttttgcc cttgaaatga attttaagaa agctttatgg tttggaattt ttcattctat
    24241 tagcgctttt aataattctg ggtttactat atttgaacat gggcttatag cttataaaca
    24301 tgatatagca attaatctta ttatcacttc tttgattatt attggagggc ttggatattt
    24361 tgttttggtt gaattatact tttttcaaag aaaaaaattg caaaatttaa gcctacatac
    24421 aaaaatagtt gttgttgcaa gtatttttct tatactctct tcaacactta ttatttttgc
    24481 ttttgaatac tcaaatcctc aaactatagg acatttttca ttttttgata aaattttaag
    24541 ctcatatttt atcgctatta actaccgtac agcaggattt aataccttag atatgggaca
    24601 tttgcatgat gcaagcttat tttttggatc attgtttatg gttattggtg gtgcaccagg
    24661 tggaacagct gggggtatga aagtaacaac tgtaatggtt ttattgctct atgcttattg
    24721 gagtatccgc gatggaagag ttagaatttt tggacatgaa attccaagag aaactatatc
    24781 taaagctttt atcatagctg taggttcagc tgtttatata gtaatagctg ttattttgct
    24841 ttccttgcta gagtcaaaat ttgattttat agccttgctt tttgaaactt cttcagcttt
    24901 tgcaactgta ggaatttcag taggaaatgg tggaacttta tctttatgcg ctttgtttag
    24961 tgatcctagc aaggtaatta tcatcattat gatgctaagt ggtaggatag gtgtttttgc
    25021 ttttttactc tcggtattca aacaagacaa agctattcat ttaaaattcc ctgaaggaaa
    25081 ggttaattta taaaggtaaa atcgtgaaaa atcttaatta tggaattata ggacttggaa
    25141 aatttggctc agttgtagca gatgaactca ttgctggagg tcatactgtt atcgttgcag
    25201 ataaagatga ggaagcttta aaaagcatac aaaatcctcc aagttatgct tatattttag
    25261 attctacaaa tatttcagcc ctaaaagaag caggctttca tgatgttgaa gttgttattg
    25321 tcagcatagg agaaaatgtt gaaaaatcaa tccttactct tatggcgctt aaagatatag
    25381 gtgttaaaaa tatcattgct aaagcaacct ctaacatcca tggtcaaatt ctttctaagt
    25441 taggcgccac aaaggttatt tatcctgaaa aagaaagtgc taaaagacta gtaaaagaat
    25501 ttttaaccaa agatgctgat tatgaagttt ttgatctttc agcaaatact atacgagcta
    25561 ttaagatcaa tatagatgaa aaattagcag gaaattcttt aaaacatgta gcacaaaata
    25621 tgaaagtgat ttcttataaa aaattaaata gcgactggga aatactacct gatttagaaa
    25681 ccacgacagt ttatagtgga gatgttgtaa ttctccttgg aacagttaag gaacttagag
    25741 aatttgaaca ctaagcaaga tttaaagcct tgcaagcctt tacaaaacgc tttaaggctg
    25801 ttttttcttt ggtagaaatt ttatgatata taacttcatc taaataatat ctaacatctt
    25861 ttatatctaa atcccttgtt ttggcatatt tttgaagtat ataataggga attttaatct
    25921 ttgtttttgg aaattttttc aaaatttgtt tatataaagc ttttttttgc acacaagaaa
    25981 atctagcaaa aacaaaaggc aatcctgttt tttcatgcca ttttgcacat aaatcgatat
    26041 atttagaagg atcttttaga taaagcttta aagccttatc gcctataatt acttttccat
    26101 cttgttttaa tactttagct aaagcatttg aagttgctga acttggatct ttggcattta
    26161 atgtattttt ttctactaaa acacttaaaa ctcttttatt ggcacaaata cccaaatcta
    26221 aatttttata tttttttcta gcgctttcta tgcttgaaat gatagctgca tcaattcttc
    26281 tataaaataa atctttattt agcttacttg gaactccttt tttatgctcc atacttgctt
    26341 taaaaccatt aggtaaggga tatttcttaa gatatatatg caaaggtaaa agattaatat
    26401 aatcaatttt tccaaaaatc atctctttta aagagtgtta aacactctat ctcctgcatc
    26461 tccaagccct gggataatat aacctttttc atttaaacct tcatcaatac aagccacaaa
    26521 aacttctaca tcatcatgcg tttggctaaa tttttgcaaa ccttgtaaag cagcaagtat
    26581 ggatataaat tttatttttt taactccttg gctttttaaa aaattacaaa cctctatagc
    26641 agtcccacct gtagcaaaca taggatctat aacaatagcg gtgcgttttt ttgcatcttt
    26701 gggaagtttt tgaaaataaa aatccgcctt taaagtctct tcatttctca caaaccccaa
    26761 aaatccaaca cttgcatcag gaatcatctt aaaaacactt tcaagcattc ctaatgcagc
    26821 tcttaaaata ggacaaatca taatcttttc atcaagtttt tttactatag ttttttgtat
    26881 aggtgttgaa atttcaattt cttttaaaga aaaatcttta ctcacttcaa aaagcaaaaa
    26941 agatgaaatt tcatcgatta acatacgaaa ttgaaagggc tttgtctctt tagcccttaa
    27001 aattcctaac ttatgttcga tcaatggatg attgatacaa tgaatatttt tcattttaag
    27061 ctttcaaaat aagctttctc gttaaaattt tttaccttag ccacaccatc ttttaccgca
    27121 gctgctgcta cagctgtact tactgcagct tttactcttt catcaaaagg ttttggtatg
    27181 acataatctc ttccaaattc taaggtactt aaattataag cctttttaac tgcatcactt
    27241 acaggaagtt ttgcaagatc tgctaatgct ttagcagccg ctactttcat attttcagtg
    27301 attttacttg cacgcacatc taaagcccca cggaaaataa aaggaaaacc taaaacatta
    27361 ttgatttgat ttggataatc acttcttcct gttcctacaa tcgtatcttt tctaagtcta
    27421 gctacatctt caggcatcac ttcaggaata ggatttgcca aagcaaaaat cacaggatct
    27481 tttgccatgc ttaaaaccat ttcatcatca agaatttttg gcgcactaag tcctaggaaa
    27541 acatcagctc cttttaaaac gtcttttaaa gtcttttcct tagaatcaac agcaaattca
    27601 agcttttgag gagttaaatc atttctatct ttagaaatca ctcctttgct atctactaaa
    27661 ataatatttt caacccctaa atttctatac atcttagcac ttgctatacc tgcggcacct
    27721 gcgccactta caaccacctt aatgtcttta aattttttac cgcttatctc cattgcattc
    27781 ataagccctg cagttgaaat aatagctgtt ccgtgctgat catcgtgcat tacaggaatt
    27841 cctaaatctt gcaaagccgc ttcgatttca aaacattttg gagcagctat atcttctaaa
    27901 tttatcccgc ccacagttgg agccaaagct ttgcaaaaat ttacaatctc ttccacacta
    27961 tgaacatcaa tttctatatc ataagcattg acatttgcaa attttttaaa caaacaagcc
    28021 ttaccttcca taacaggttt tgaagcctgc gctcctatgt ttccaagtcc taaaacagca
    28081 gaaccatcac taactatagc tactaaatta gccttatttg tataagtata agcaagctca
    28141 ttatctttag cgatttcaag gcaaggttct gcaactcctg ggctatacgc caaagataga
    28201 tcatggcttg tagccattgg cttacttggt acaatatcaa ttttcccacc taaatggtat
    28261 tttaaagctt cttcttttaa attcatttta ttttcctcta acttttaaaa aattttctat
    28321 tctttttttg cactcatcaa cctctaaaaa ttctaatact tcaaaaatac taggacttac
    28381 cgcactccct gttaaagcta tgcgtatagg ctgagccaaa tcttttaact ttgcttcttt
    28441 tttttctaaa aaatcatttg taaaatcttc aaaatcttta cctgtttttt gatctttaag
    28501 tgtattagca aatgcttgga gcaattctaa attatttttg ttaataaatt tttgtactgc
    28561 attttcatca taattttgcg gtgcattaac tatacttttt gcaccattga taatatcatg
    28621 caaggttttt gcacgctctc ttaataaatc aagtaaaaat cctgcctttt cataaacaga
    28681 taaatcaaag ccaagatcct taagctgacg gttaatctct tcaaaaggca aagttttaat
    28741 ataatgagcg ttaagccatt caagcttttt aacattataa caagatgcgc ttttattaat
    28801 atgataaggg tcaaaaagtt ttttcaaatc ttctaatgaa aaaacctcat catcaccatg
    28861 gctccaacct aaacgcacaa gaaaattaag caaagcttga ggtaaaattc ccatttcttt
    28921 gtattccata acatcagttg ccccatgtct ttttgaaagc tttttaccat cttctccatg
    28981 tatcatagcc acatgaaaaa atttaggaat tttaaaaccc aatgcctcat aaagtacaat
    29041 ttgtttagga gtatttgaaa gatgatcatc tccgcgaatc acatcactta cccccattaa
    29101 agcatcatca ataacaacag taaaattata agttggagtt ccatcacttc ttgcaatgat
    29161 aaaatcatcc attatatcct ctgctttaaa tctcacctcg cctttaaccc catcttcaaa
    29221 aacaatctca ccgctttgag gtgctttaat acgcacaaca ggctctatac cctgaggtgg
    29281 cgtgcctgta aattctctat atcttccatc atatcttggg cgctctttgg cagcttcttg
    29341 cttggcgcgc aattcttcta attcttcttt actcatataa caataatacg ctttaccttc
    29401 atctaaaagc tttttaacat attctttata aagatcaaaa cgctctgatt ggtaagttac
    29461 ttctccatca tgttctaaac cgcaccattt aaaagcttcg ataattgctt tagtagcttc
    29521 tttggaattt ctttttaaat ccgtatcttc gatacgaagt aaaaaatttc caccattttt
    29581 tctagcgtat aaataattat aaagagctgt tctaagtcca cctatgtgca aataccctgt
    29641 tgggcttgga gcaaaacgcg ttgtaagttt ttcgtgcatt ttttgccttt tcttaaattt
    29701 ttattgatat aatgcgatat ttatacttaa ataaaggttt gaaatgaaaa aaattttatt
    29761 aagttttgca ttttttgcaa gtttagctag tgcaaatacc attaatgcta tagccgtagt
    29821 tgtagataaa gagcctatca caacttatga tatagatcaa actatgaaag cacttaaaat
    29881 tgatagaaat aaagctttag gcgtactcat caatgaaaaa atggaaattt cacaaatgaa
    29941 acaactaggt attgtagtca atgatctaga gcttgatgat gctataaata aaatgcttac
    30001 tcaaaacaaa acgactttaa atgctttcaa agcaaattta aaatccaaaa atcaaagcta
    30061 tgaacaattt cgtgcaaatt ttaaaaaaga tttagaaaaa agaaagcttt atgaaaaaat
    30121 cgcaagtatg gcaaaaactg attttagtga tgatggagca aaaaaatttt tcgaacaaaa
    30181 taaagataaa ttcacttttt atacacaaat taatgcaaat atttatctat caaacaatcc
    30241 tcaaacttta gaaaatatca aaaatacaaa aaaaacaatc cttaaaccac aaaatgcatc
    30301 tttaaacaca agtaatgccg atccaagact tttagggctt ttatcacaaa ttcctgttgg
    30361 aggcttttcc cctgttttaa atggaaaaaa tggctatgaa ctctatgaag ttaaaagcaa
    30421 agatggggca caaactcctg aatatgaaca agttaaaaat gaagttttaa acgcttatgt
    30481 aagcgaacaa agacaaaatt tcatacagga ttattttgat aaactccgct ctaaaatcaa
    30541 tatagaatat ttaagataaa aattacaatt aaaatttccc tttaataggg aaattttaat
    30601 gtcttgcaag ataatttgta tcgtaattat tattaataaa atcaggattt tccatcatag
    30661 aaagatgaaa atctttggtt gtttttatcc cacttataag caactcatct aaagctactt
    30721 tcatttttgc aatagcttta ttacgatctt ctgcccaaac tacaagttta cctatcatag
    30781 aatcataata aggaggcacg ctatagtctt gataacaatg actttccatt ctgacattgc
    30841 gtcctgcggg tggaatgtat ttagtaatct tacctggact tggcaagaaa gttttggaat
    30901 cttcggctgt gattctacat tctatagaat gcccatttaa tttaatactt tcttgagatg
    30961 gtaaagcata accttctgct actttaatca tttgttctat gatatcaatc ccacttacca
    31021 tttcacttac acagtgttca acttgcaaac gcgtattcat ttctataaaa taaaaatcca
    31081 aatttttatc taccaaaaac tcaaaagttc ccgcaccttc atatcctata gctttagctg
    31141 ccttaatagc agtttcatga agtctagtgc gtgttttttc atcaagcaaa atcgcagggg
    31201 attcttctat aagtttttga tggcgtcttt gcatagaaca atctctttcg cccacatgaa
    31261 tcacattgcc aaaactatct cctataacct gtacttctat atggcgtgga ttttgtatgt
    31321 atttttccat atacatagtt ccatcgccaa atgctgtcat agcctcgctt tcagccgacc
    31381 aatacgcttt ttcaagatct ttttcatttt caaccacacg cataccacga ccaccaccac
    31441 ctgcagctgc ttttaaaatc acaggataac ctatttcttt ggcaagtttt ttagctgctt
    31501 cagctcctgc caaagcccca tcgcttcctg ggatcacagg tacgcctgct ctttgcatga
    31561 cttgttttgc ttttgattta tcactcatta aattcatagc ttccacagaa ggacctataa
    31621 atttgatgtt atgtttagca caaatttcaa caaaattttg attttcactt aaaaatccgt
    31681 atcctggaaa aatcgcatct gcttcagcaa tttcagctgc tgtaataatg gctgggatat
    31741 ttaaatagct ttcagaactt cttgctttgc ctatacaaat gcttgcatca gcgtatttta
    31801 aatacaaagc atctttatct gcttcagagt acacacaaat tgcttttttg cccatttctt
    31861 taatcgttct taaagcacgc agtgctattt ctccacgatt agcaattaat atgcttttaa
    31921 tttccatttt ataatttctc caccgcaaat aaaggcattc caaattctac aggctgacca
    31981 tcagcaacta aaatttcagc gatcctacaa tcaaattccg cttcaatttc attcatgatt
    32041 ttcatcgctt cgataatagc tatagtatcg ccttttttaa ccgtactacc tacttttaca
    32101 aaaggtgctg cacctggact tggagcttga tagaaagttc ctaccatagg gctatttata
    32161 cttggtttgt ttgattttac actttgacta ggttgagctt cgtttacaac gcttacattg
    32221 ataggttgtg gagctggaac tggaggacaa acaggagctg gaacatcgca gcacatatct
    32281 ctttcaagtt ctatttcaaa accatcttgt tctttgatct taattttact aatatttgct
    32341 tcagcaaaaa ggtttactaa ctctttaatt tcttcttttg tcataaaatt ctcctacaaa
    32401 atttaagaac ttaaccttgt attatataaa aaaacttgaa atttaacttt aaaaaagaaa
    32461 aaaatcataa aaaatataga ttttttaggt tataatcctt acaaacaatt acaaatatta
    32521 aaaggttaaa aatgggctta aaagcggata attggataag aaaaatggca ttagaacaca
    32581 agatgatcga accattttgc gaagcaaata taggaaaagg tgtggtaagc tatggacttt
    32641 caagctatgg ttatgatata cgcgtaggac gtgagtttaa aatttttacc aatgttaatt
    32701 caactgtagt ggatccaaaa aatttcgtag aagaaaatgt agtagatttt gaaggtgatg
    32761 tatgtatagt tcctgcaaat tcttttgccc tagctagaac tatagagtat tttaaaatgc
    32821 ctgatgatgt cttagctatt tgtcttggca aaagcactta tgcaagatgt ggtatcatcg
    32881 tcaatgttac cccttttgaa ccaggttttg aaggacatat tactatagaa atttcaaata
    32941 ctacgccttt acctgcaaaa atttatgcta atgaaggcat agcacaagtg ttgtttttac
    33001 aaggtgatga aaaatgtgac accacttata aagataaaaa aggcaagtat caagctcaaa
    33061 cgggcataac cttgccaaga attttaaaat aggaacactt gttgctttaa ttttaaaaaa
    33121 cttaagcaaa ggaaggcaaa atgtttaacg gaaaaaatat cttaatcacg ggcggaacag
    33181 gctcttttgg aaaaacctat actaaggttt tgctagaaaa ttataaacct aataaaatca
    33241 tcatttattc tcgtgatgag ctcaaacaat ttgaaatggc aagcgttttt aatgctcctt
    33301 gtatgcgtta tttcatagga gatgtaagag ataaagagcg tttaagtgct gctatgcgtg
    33361 atgtggattt tgttatacat gctgctgcaa tgaagcatgt gcctattgct gaatataacc
    33421 ctatggaatg tataaaaaca aacatacacg gtgcgcaaaa tgtcatcgac gcttgttttg
    33481 aaaatggggt taaaaaatgt atcgctctta gtacggataa ggcttgtaat cctgtaaatt
    33541 tatacggtgc aaccaaactt gcaagcgata agctttttgt cgctgcaaac aacatagcag
    33601 gtaacaagca aacacgcttt ggtgttacaa gatatggcaa tgttgtaggt tcaagaggtt
    33661 cagtggtgcc tttctttaaa aaactcatca gcgaaggagc taaagaactt cctatcaccg
    33721 atacgagaat gactcgtttt tggatcagcc ttgaagatgg agtaaaattt gtactgagta
    33781 attttgaaag aatgcatgga ggagaaatct ttatccctaa aattccttcg atgaaaatca
    33841 ccgatctagc ccatgctcta gctcctaatt taagccataa aatcataggc ataagagcag
    33901 gagaaaaact acatgaaatc atgatttcaa gcgatgatag ccatttaacc tatgaatttg
    33961 aaaactacta tgctataagc ccgagtatta aatttgtaga taaagataat gactttagta
    34021 tcaatgccct aggcgaaaaa gggcaaaagg taaaagatgg tttttcttat agctcggata
    34081 ataatccttt atgggcaagc gaaaaagaac ttttagaaat catcaatcac accgagggtt
    34141 tttaaaatgc ttacttattc tcatcaaaac atcgatcaaa gcgatataga tacgcttaca
    34201 aaagctttaa aagatgaaat tttaactgga ggtaaaaagg tagatgaatt tgaagaagcc
    34261 ctttgcgaat atgtgggcgt aaaacacgct tgtgtattaa actcagctac ttcagctctt
    34321 catcttgcct acacagcact aggtgtccaa gaaaaaatcg ttttaaccac tcctttaacc
    34381 ttcgctgcta cggctaatgc agccttaata gctggagcta aggtagagtt tatcgacatt
    34441 aaaaacgatg gcaatattga cgaaaaaaaa ctagaagcaa gacttttaaa agatagtaaa
    34501 aatataggag ctattagcgt ggtggatttt gggggaaata gcgttgaaat agatgaaatt
    34561 tcaagccttg ctaaaaaata caatatccct ttaatcgatg atgcaagcca tgctttaggt
    34621 gccttatata aaagtgaaaa agtaggaaaa aaagccgatc tttctatctt ttcttttcat
    34681 cctgttaaac ccatcactac ttttgaaggc ggggctgtgg tgagtgataa taaagagctt
    34741 atcaccaaaa tcaagctttt aagaagccat ggtatcatta aaaaaaggct ttgggatagc
    34801 gatatgatag aacttggcta taattaccgc ttaagcgatg ttgcttgtgc tttagggata
    34861 aaccagctta aaaaactcga tcacaatctt gaaaaaagag aagaaattgc aagtttttac
    34921 gataaagaat ttgaaaaaaa tccttatttt tccacgataa aaatcaaaaa ttataaaaaa
    34981 agctcaagac atttataccc tatcttgctt tttcctgaat tttattgtca aaaagaagaa
    35041 ctttttgaaa gcttgcttca tgcaggagtt ggtgtacagg tgcattacaa acctacttat
    35101 gagtttagtt tttataaaaa actcttagga gaaataaaac tccgaaatgc ggataatttt
    35161 tacaaagccg agcttagcat accttgtcat caagaaatga atctaaaaga tgcaaaattt
    35221 gtaaaagata ctttatttag cattcttgaa aaagttaaaa agggatattg tgaataagct
    35281 agactttaga agccaagatt ttagccaaac tggaaaggct atgtaataaa ctagcttgcg
    35341 aactttttcc tatccctaga agcatcacag ggcaaggttt tagagatagc ttagaaattt
    35401 taaataaaac tctgggcggc ggggggatac tcaaatttca ctctataaaa agtggcacaa
    35461 aggtttttga ctggatagtc cctgatgaat ggaatgttaa agaagcctat atcatcacct
    35521 cagaaggaga aaaaatttgt gattttaaaa agcataattt acaccttcta aattatagcg
    35581 aagctatcga taaagaaatc gaacttgaat aacttcaaaa tcatctttac tccatagaag
    35641 aaatgcccga tgctattcct tatgtaacga gttattacaa aagacgttgg ggattttgtc
    35701 tcacgcataa tgaaagaaaa aaactcaaaa aaggcaaata caaagtctat atcaatgcga
    35761 aacatgatga aaatggggtt ttggattatg ctgattttat cctacctagt acgcaaaatt
    35821 caaaagatga aattttaatt tcaacctatc tttgtcatcc ttccatggca aataatgagc
    35881 ttagtggtcc tgtggtggct attttcctag caaaatggct tttgagttta aaagaaagaa
    35941 ggtataatta ccgctttgtc atcattcctg aaaccatagg ctctatagtc tatcttagca
    36001 aacatttaga gcatttaaaa aaacatgtta aagcaggctt tgtgctttct tgcttaggcg
    36061 atgatcatgc ttactcactc atacacacac ccaaaaaaac actctaagtg ataaagttgc
    36121 cttgcatacg cttaaaaata aaaaaaattt caaagctttt agttttttag atcgtggaag
    36181 cgatgaaaga caatacaatg ctccgcttgt aaatcttggc attgtaggag tatgtcgcac
    36241 aagataccta gaatacgaac aataccacac cagcaaagat gatctcaatt ttatctctga
    36301 aaaaggttta atgggtggac ttcaaagcat acaagaaatg attttaaatc tagaaatcaa
    36361 cgctgtatat gaaaacacca tagtatgcga acccaatctt ggcaaaagag gactatatca
    36421 tacccttagc actgccaatg acattccttt agcttgtaat tttctagctt actgtgatgg
    36481 agagaatgat atcatcgata tagccaatat cttaaatatg caagcttatg aatttaaaga
    36541 acttttgaaa aaaataaaat tttatggact agtaaaatga aatatttttt agaacacaat
    36601 gacaaaaaat actccgataa ggatttaata gatgcttttt atcaactagg tataaaaaga
    36661 ggcgatattt tatgtgtaca tacagaactt tttaaatttg gcataccttt gctttctaga
    36721 aatgaatttt tacagactat actcaattgt ttttttgaag ttataggtca ggaaggcact
    36781 ttgatcatgc caacctttac ttatagtttt tgcaaaaatg aagtttatga caaaataaat
    36841 tccaaaacaa aaatgggagc attaaataaa tattttcgca aacaaacagg agtaaaacgc
    36901 acaaacgatc ctatattttc ttttgctata aaaggagcaa aagaagaatt atttttaaaa
    36961 gatacaacaa gttgttttgg ggaaaattgt gtttatgaag ttttagccaa agagaatgga
    37021 aaatatataa tttttggttt aaatgaaggg cacgctctag ttcattacgc agaagaaaaa
    37081 aatacaactt tttgtagata ttttaaaaat tttaaaggta ttttaataaa cgaaaaaagg
    37141 aaagaaaaaa caataactat tgactactac gttagagatt tgcaacagtc ttatttatgc
    37201 gatattaata aaattaatcc tataattcaa gaaacgcaaa attata
//
LOCUS       DAPIWV010000002        37191 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.002, whole genome shotgun sequence.
ACCESSION   DAPIWV010000002 DAPIWV010000000
VERSION     DAPIWV010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 37191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37191
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.002"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            51..1579
                     /locus_tag="RJ272_000039"
                     /pseudo
     CDS             51..1579
                     /locus_tag="RJ272_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            1750..3303
                     /locus_tag="RJ272_000040"
     CDS             1750..3303
                     /locus_tag="RJ272_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HDV7381178.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSTFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3319..5109
                     /locus_tag="RJ272_000041"
     CDS             3319..5109
                     /locus_tag="RJ272_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDV7381179.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNATSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAVKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDAKASEFRAQSKHYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKVKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5230..7035)
                     /gene="mrdA"
                     /locus_tag="RJ272_000042"
     CDS             complement(5230..7035)
                     /gene="mrdA"
                     /locus_tag="RJ272_000042"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7381180.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKIE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLLEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(7036..7530)
                     /locus_tag="RJ272_000043"
     CDS             complement(7036..7530)
                     /locus_tag="RJ272_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381181.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFIYAPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(7527..8123)
                     /locus_tag="RJ272_000044"
     CDS             complement(7527..8123)
                     /locus_tag="RJ272_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDV7381182.1"
                     /translation="MIIGAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVTCKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(8120..8581)
                     /locus_tag="RJ272_000045"
     CDS             complement(8120..8581)
                     /locus_tag="RJ272_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HDV7381183.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(8563..9078)
                     /locus_tag="RJ272_000046"
     CDS             complement(8563..9078)
                     /locus_tag="RJ272_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381184.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDIKNKILN
                     IQGVSAWLQDK"
     gene            complement(9069..9557)
                     /locus_tag="RJ272_000047"
     CDS             complement(9069..9557)
                     /locus_tag="RJ272_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDV7381185.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKQGGKAAVAQMIEILVEKNHLKEEWNKL
                     WL"
     gene            complement(9563..10390)
                     /locus_tag="RJ272_000048"
     CDS             complement(9563..10390)
                     /locus_tag="RJ272_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDV7381186.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGAKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(10350..11468)
                     /locus_tag="RJ272_000049"
     CDS             complement(10350..11468)
                     /locus_tag="RJ272_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDV7381187.1"
                     /translation="MKKNLLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(11468..12283)
                     /locus_tag="RJ272_000050"
     CDS             complement(11468..12283)
                     /locus_tag="RJ272_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDV7381188.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQLVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(12274..13518)
                     /gene="cbrR"
                     /locus_tag="RJ272_000051"
     CDS             complement(12274..13518)
                     /gene="cbrR"
                     /locus_tag="RJ272_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HDV7381189.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVILAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(13621..15144)
                     /locus_tag="RJ272_000052"
     CDS             complement(13621..15144)
                     /locus_tag="RJ272_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7381190.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIELDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFISFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARVQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKD"
     gene            complement(15144..16004)
                     /locus_tag="RJ272_000053"
     CDS             complement(15144..16004)
                     /locus_tag="RJ272_000053"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDV7381191.1"
                     /translation="MQNKIDHKNIKTIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            16095..17846
                     /gene="aspS"
                     /locus_tag="RJ272_000054"
     CDS             16095..17846
                     /gene="aspS"
                     /locus_tag="RJ272_000054"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDV7381192.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGAIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVINVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            17843..18421
                     /locus_tag="RJ272_000055"
     CDS             17843..18421
                     /locus_tag="RJ272_000055"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDV7381193.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            18431..18949
                     /gene="ppa"
                     /locus_tag="RJ272_000056"
     CDS             18431..18949
                     /gene="ppa"
                     /locus_tag="RJ272_000056"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDV7381194.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            18990..19487
                     /gene="msrA"
                     /locus_tag="RJ272_000057"
     CDS             18990..19487
                     /gene="msrA"
                     /locus_tag="RJ272_000057"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDV7381195.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(19663..20502)
                     /locus_tag="RJ272_000058"
     CDS             complement(19663..20502)
                     /locus_tag="RJ272_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HDV7381196.1"
                     /translation="MQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKIQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(20531..20914)
                     /gene="ruvX"
                     /locus_tag="RJ272_000059"
     CDS             complement(20531..20914)
                     /gene="ruvX"
                     /locus_tag="RJ272_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDV7381197.1"
                     /translation="MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(20911..21684)
                     /locus_tag="RJ272_000060"
     CDS             complement(20911..21684)
                     /locus_tag="RJ272_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDV7381198.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASIAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLV"
     gene            complement(21674..22756)
                     /locus_tag="RJ272_000061"
     CDS             complement(21674..22756)
                     /locus_tag="RJ272_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDV7381199.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVFSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFDEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPEIDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLKSAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            complement(22760..23782)
                     /gene="ilvC"
                     /locus_tag="RJ272_000062"
     CDS             complement(22760..23782)
                     /gene="ilvC"
                     /locus_tag="RJ272_000062"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDV7381200.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     IIGLREGSVSAVKAKNAGFEVMSVSEASKTADVVMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIVTEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            23901..25835
                     /locus_tag="RJ272_000063"
     CDS             23901..25835
                     /locus_tag="RJ272_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HDV7381201.1"
                     /translation="MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDIQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKIALDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALSDELNLRAEVDKLIIKAQKKAEYSSINAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCESLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLESVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            25828..26793
                     /locus_tag="RJ272_000064"
     CDS             25828..26793
                     /locus_tag="RJ272_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDV7381202.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKILVELCKNNTNNFF
                     LLELYDENSKQSDIEKIFSPHFARFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKCEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            26886..27929
                     /locus_tag="RJ272_000065"
     CDS             26886..27929
                     /locus_tag="RJ272_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
                     /protein_id="HDV7381203.1"
                     /translation="MDFENQLNAIVETIAERKTLVNTEEATKMTFIMPFLKTLGYDVF
                     NPSIVVPEYTADIGTKKGEKVDYAIFKDSKPFILIEAKNHTENLDNHNNQLVRYFNTN
                     PSIKFAILTNGIEYRFFTDIEQQNLMDKIPFLVVNLEKLKPRDIKDLKRFICTDLNLD
                     EILSIAMEKKYYRSIQEIFKSEIENPSDEFTSFFAKQMTEKRMTSAVLEEFKNYIKKS
                     FKEIINDLAYEKITSIKNNLQNINDDENDEQIDESKDIVTTEEELQGFYIVKSILASV
                     SANLEDVSYKDTLSYFSILYQGKVTKWICRLYFNTSKKSISFPDGASYNIEKLEDIYQ
                     YKADIIKAFESRK"
     gene            complement(27951..28295)
                     /gene="hypA"
                     /locus_tag="RJ272_000066"
     CDS             complement(27951..28295)
                     /gene="hypA"
                     /locus_tag="RJ272_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HDV7381204.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(28295..29269)
                     /gene="hypE"
                     /locus_tag="RJ272_000067"
     CDS             complement(28295..29269)
                     /gene="hypE"
                     /locus_tag="RJ272_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HDV7381205.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            complement(29266..30357)
                     /gene="hypD"
                     /locus_tag="RJ272_000068"
     CDS             complement(29266..30357)
                     /gene="hypD"
                     /locus_tag="RJ272_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HDV7381206.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGCGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCAVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            complement(30341..30622)
                     /locus_tag="RJ272_000069"
     CDS             complement(30341..30622)
                     /locus_tag="RJ272_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HDV7381207.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            complement(30622..31365)
                     /gene="hypB"
                     /locus_tag="RJ272_000070"
     CDS             complement(30622..31365)
                     /gene="hypB"
                     /locus_tag="RJ272_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HDV7381208.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSITEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            complement(31443..33632)
                     /gene="hypF"
                     /locus_tag="RJ272_000071"
     CDS             complement(31443..33632)
                     /gene="hypF"
                     /locus_tag="RJ272_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HDV7381209.1"
                     /translation="MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGNLVATSANLSGESI
                     IKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKEF
                     LAKIPKIKLENLKKIYSQSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFIEKGQANFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            complement(33613..35133)
                     /locus_tag="RJ272_000072"
     CDS             complement(33613..35133)
                     /locus_tag="RJ272_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381210.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFNPCIPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDYEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFNKEFPLLDENFELQNNFYSLLSLLGRVLNLGRNL
                     QESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDAPLRV"
     gene            complement(35175..35822)
                     /locus_tag="RJ272_000073"
     CDS             complement(35175..35822)
                     /locus_tag="RJ272_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7381211.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKTRFEKKVLKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            complement(35798..37114)
                     /locus_tag="RJ272_000074"
     CDS             complement(35798..37114)
                     /locus_tag="RJ272_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDV7381212.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
BASE COUNT        13043 a         6292 c         4888 g        12968 t
ORIGIN      
        1 attactatta gttaaaatat tttaagcata aaaaagaaag gtattgggaa gtgactaaac
       61 aagaaataca aaaactcgat acaaatttcc taggtcatcc caagccttta ttctctctat
      121 caatggtaga actttgggaa agatttgctt tttatggcat acgatcttta cttgtgcttt
      181 tcatggcaac aaccataagc aaaggtggac ttggaataag cactgaatac gcctcggcaa
      241 tttatggcat ttttgcagga tgcttgtatt tagcagcact tcctggaggc tggattactg
      301 ataattattt agggcaaaaa aaggctttat ttctaggttc ttttattata gctttaggac
      361 atattagcat agccttatct attctaagca cacctatatt tttcctagga cttactttta
      421 tcgttattgg tactggattt tttaaaacta gtgcttctgt aacagttgga atgttatata
      481 aacaaaatga tacaagatgc gatactggct atacgatttt ttatatagga attaacattg
      541 gagcattcat tgctcctctt atatgtggtt ttattcaagc aaaatggaat tatcatttag
      601 gatttggcat aggaggttta ggtatgctaa tctctttgct tattttatat tttaaagcta
      661 tccctgaact tgaagaattt cataaaaatt gtactttaag gcaaaactgg gaacaaccat
      721 ttaaaaaaag taaaaattta actcttatac taagtataag cttgttaagt attattggat
      781 tttttctaat ttttattaat cttgcagata ttaatcccat aatactatca aaaaaacttc
      841 taattgtaat tttactatgt ttggtaattt atttcatata tctttttgtt tttaaaacct
      901 taaataaaag agaaaaacag caattaacaa ttttaattgt tttattcttt gtagccactt
      961 tttttggagc acttttgaac aaaaacctac cgcttataat ctttttgcgc aagattttac
     1021 aaatagaaat atttttgatt ggaaaattcc aacaaactgg tttcaatctt ttaatccaat
     1081 ttttatcatc atacttgctc ctatagcaag ttatatttgg atatttttag agaaaaaaaa
     1141 tatatatttt tcttccattg gaaaatttac tttaggaata ttatttgccg gcattggttt
     1201 tatgatgatg acctttgctt cacaaaatct aataaacaac aatggtttgc caatatccat
     1261 ggcttggatt atcataagta tattcttttt aacacttggg gaattatgcg tgtctcctgt
     1321 tggactctct ataatggcta aggttgcccc tgatttaatc aaaaatcaaa tcatgggact
     1381 ttggtttgta gcaagtgcac ttggaaattt tgttgcagga cttataggag gaaatgtcaa
     1441 tattaaaaac atcgatcaac ttcctaatat ttttgaacaa tgcatgtgga tgctttttgt
     1501 tgtagcgctt ttacttttta ttgctaaaaa accaatttat aaaattctta acgaaaaaaa
     1561 taagcaatta tctaactaaa cttaaaatac aaaatacacc aaagttgaaa attgatctta
     1621 atatttcttt ttttatattt gcaaaaaagt aacattatga tataaatcat ttaaaaatat
     1681 tacaaagtta tacatatttt ttaatttctt gtctataatt tataaataaa aatacacaaa
     1741 ggatataaat tgagtaaaaa tgtaaaaaat ttagatactt cattttttgg acatccaaaa
     1801 ccacttttat ctctttcact tactgagctt tgggaaagat tttcttttta cggaattcgc
     1861 cccttgcttt acctttttat gatagcaagt tttgaaaaaa gcggaatgaa cttaaaacct
     1921 gaagaagcaa gtgcaattat gggaattttt gcaagttgtt tatatcttgc tgctttgcca
     1981 ggtggatggc ttgcggataa ttacttagga caaaaaagag caattttact aggtgcttta
     2041 actatagcat ttggacattt gtgcatagcc ttttcttatt ttaacaataa aatgattttt
     2101 gttggtatgg tttttttggt tataggtaca ggacttttta aaacttgtgc ttctgtaatg
     2161 gttggaatgc tttataaaaa aaatgatgca aggcgtgact ctggttttac tcttttttat
     2221 atgtgcttta attttggtgc ttttgtagct cctttaattt gcggcttttt acaaaaagaa
     2281 tacggatggc attttggttt tggtgcaggt gggattggta tgcttttagc ggtaattatt
     2341 ttctacctaa aaactatgcc tgatttaaaa gaatttgatg aaaaagttgg catagactct
     2401 acttgggata gaccaagcaa aaaaagcaaa aacgcatttt acatcatcat tgtatcaggt
     2461 attgttttgc ttggagcaat atttttaatc cttggtggtt ttataaaatt agatgcacaa
     2521 gttattaata aaaatattat tttaactatc ttagcttgtg ctggaattta ttttttatat
     2581 cttttcgctt ttacttcttt aaaaatagaa gaaaaaagaa atttaattat ttttattgtt
     2641 ttatttttag cggctgcgtt attttggtca gtatatgagc aacaatacac ttcttttaat
     2701 ttttttgcag aaaaattaac agataaaacc atattaaatt atgaaattcc tacaatatgg
     2761 tttcaatctc ttggaggttt atttgttata ctttttgcac cttttagtac ttttatatgg
     2821 actatatgtg ccaaaaataa taaagaaatt tcatctatta ttaaatttgc attaggactt
     2881 ttgggtgcag ctttggcatt tttaataatg gctttagctt caaatcatgc aattagttta
     2941 aatggcgatg ctaatacatt aagagaaaat ttagaaaatt catcacaaat tattttagtt
     3001 tcaccttggt ggcttgtcag tagctttttg cttatggttt taggagagct ttgcctttcc
     3061 cctgtgggac tttctataat gacaaaaatt gcacctaatt taattaaatc tcaagtcatg
     3121 ggactttggt ttgtagcaag tgcattaggc aatgctttag ctggattcat aggtggtaaa
     3181 gcaagtgaag aaaatatagc ttatttgcca aatttatttt accaatgtat gtggatatta
     3241 cttggtgctg ttataatttt acttatactc aaaaaaccta tcaataaaat actaaaaaat
     3301 taatattaag gagaaaatat gagtatttac aaacaaagag tattagaact tagaagatta
     3361 atgaaagaaa ataatattga cgcctatctc atcttaagcg cggatccgca tttgagcgaa
     3421 tatttaccag aatattacaa aaacagagtc tttatcagtg gctttaaggg ttctgttgga
     3481 acagttctta tcacacaaga agagggcttt ttgtgggtag atggaagata ttggcttcaa
     3541 gcacaaaagg aattagaagg tagtggcata cttttacaaa agcaagatgc taaaaatact
     3601 tttaccaaat ggttggaaaa aaatttaagc gaagatcaaa ttttaggcat cgattttgca
     3661 cttttacctt tatctttgca aaaagattta aagattaatt gcaaggcaaa tttaaaacat
     3721 atagatttga taagtccact ttggaaagat cgtcccactt taccacaaga aaaaatttat
     3781 gaacacgaac tagaatactg ctcttactca agaaaagaaa aattagcatt agtgcgtcaa
     3841 aaaatgaaaa atttaaatgc tacttctcat ttaatctcca gccttgatga tatagcttgg
     3901 cttacaaatt taagagggaa tgatgtaaat tataatcctg tatttttaag tcatttgcta
     3961 atcttggaag acaaagcttt gctttttgtt gatcagaaaa aagtaaattc agaacttgaa
     4021 aaaaaattaa atttagatgg gttttggctt aaaaattatg atgaaatcat catggagctt
     4081 gaaaaacttg caaatacaaa tttgcttatt gaaccttcaa aaatgaccgc tttactcata
     4141 aattctttag ataaaagcgt aaaaatcatt caagaaatta atccaagcac tcacttaaaa
     4201 gcagttaaaa atacaaaaga aatagcgcat atacaagatg ctatgataga agatggagtg
     4261 gctttatgta aattttttgc atggcttgaa gaagcgatag aaaataaaga attaataagc
     4321 gaattagaca tagatgctaa agcaagcgaa tttagagcac aaagcaagca ctacataagt
     4381 gatagttttg ccactatagc aggctttaac gaaaacgcag catatccaca ttataaagcc
     4441 acaaaagaga gttttgctta tcttaaaaaa gatgggcttt tacttattga ttctggtgga
     4501 caatataaaa acggcacaac agatattaca cgcgttgtac caataggaaa ggctaatgca
     4561 gaacaaattc atgactatac cttggtttta aaagcacata ttgccatttc cagtgcaatt
     4621 tttccaaaag atatagctat gcccttactt gatgcaatta cacgcgcacc tttatggaaa
     4681 gaacaaattg actatataca cggcacagga catggcgtgg gatatttttt aaatgtccat
     4741 gaaggtccac aagttttatc ttatctatcc cctgtgcttg aaaaaacaaa agtcaaagaa
     4801 ggtatgctaa cctccataga gccaggtatt tataaagtag gtaaatgggg tataagactt
     4861 gaaaatttag ttattcatac caaagtagaa aatcctaaaa ataaagattt tggagagttt
     4921 ttatacttta aacctgttac tctttgtcct tttgaaatat cttgtattga tacaaaaatg
     4981 ttagatgaaa aagaaaaaga atggttaaac aattatcaca aagaagtatt tgaaaaactt
     5041 tctcctaagc taggtgatta tccaaaagct ctagtttggc ttgaaaaaag aacaaaagcc
     5101 atcttttaag atacttttgt taacatagat aaattttcct tgtattaaac ttataatttg
     5161 tttaatacaa ggtttttaaa ccaattgcta aaaaagtttt ttttgaaaaa ctcaatttac
     5221 aactaaaaat tatttaaaat atccaagttc aatcattttt tgataaattt tagctacagt
     5281 tgcccctgaa gtaatatttc tcccaccatg ttccaaaaga acggtaacta catattttgg
     5341 cttagaataa ggagcataag aagtaagcca cgcatgagat ctagtataat actcaaattg
     5401 tttttcatcg accctatttt tatctgtttg tgaaaatccc acaacctgag cagttcctgt
     5461 ttttgctgca actttcacat caagattatg caaataacga taagaggttc ctccttgctc
     5521 attagcaaca gcatacattg catctcttat ataaggcaat tgactctttt caaataaagt
     5581 aaaaatttct tttttatttt catccatttg attttctata gttgtattat tattttctat
     5641 gctttttaaa aaatgaggta taacctctcc accttttgcg atttgagccg tatatctagc
     5701 aatttgcata ggtgttgcga gaaaattacc ttgacctata gctgtattta aagtatcacc
     5761 ttgaaaccaa gattgtctat atctttgcat cttccattct ttacttggta aagttcctac
     5821 aaattcacta ggtaaatcta cccctgtttt cgctccaaag ccaatgcgag ataaagtttc
     5881 acttatttga tcgattccaa cttgcaaact gccattataa aaataaacat cacaactata
     5941 ttttatcgca tgttttaaat ccacaggtcc atggcccgat cgattccaac atctaaaaaa
     6001 cctgcctcca agctcaatgc ttccattgca aacatattga gtcgacgggc taatattttt
     6061 agaatttaaa aaagaaagcc ctactcccat ttttacaaca gaacctggag gataatatcc
     6121 atttataagt ttatttgtaa aaggatgatc aagactattt gaaagctcat cccaatcctt
     6181 aaaagaaatc cctgttacaa aaggattaag atcatattca gggaaactcc ctgcagctaa
     6241 aatagatcca tcatttacat tcataattat agcagctcca gcattccctt caagcaatga
     6301 agttaaataa gactgaagct ctatatctat cgtaagttct atatcattag acatagcagg
     6361 agtgtaagaa agctgttcta cttcttgatt taaggcatta accttataaa ccctagttcc
     6421 tttttctcct tgtaaaatat cattataata gcgttctata ccgctttttc ccgtatagtt
     6481 agaaagtttt gctatttcat tttcttgaac atcttgcaaa tttgccttac ctacataccc
     6541 aataatatgc gaagccaatt ttccaaaagg atattttctt tttacaacag gatctatttt
     6601 tattgtttta ttaagattta actctgaata atgcggaata atctcatcgt agggtataaa
     6661 atctacaact ttaataaaat cttgattata gtaagaatca tttctcttat aaatttctgc
     6721 taatttacta gcatttaaat cgggaaataa atttgtaagt tcagataatt ctttatctaa
     6781 aattccttta tttgactttt taatacttaa ataaggttta atagaaatac taaaacccaa
     6841 atcattaata gccaataaag ttccatttct atctgtaatt tgacccctaa caggtggtaa
     6901 aaattcaatt tttatggcat tttgtttggc aagttcttca taatatacat ttgattttat
     6961 actcaaataa tacacacgac ttaataaaaa tataaaaaac aatagtataa atccaacaac
     7021 taaacgcatt ctcatttaaa ttttaccttt aaaaaacaca taagctaaac aacattctat
     7081 aaaaactgaa acaatatacg cccatcctaa aattttaatt ttttcatctc caatataaga
     7141 caatatcata tccaaaaaca aaataatgcc gtaagcacaa agcacaaaaa caacagggat
     7201 aaatttacca atttttaaat ttgtcttaat ccaatctgca caaagataat aaaaaataaa
     7261 aaatgccaac caagatgaaa aaataaaaaa attataagtt atatcagtaa aaaataaaaa
     7321 aaataaagaa aaataccatc taaaatcaag ctttgaaaaa gttctttctc tctcttctag
     7381 taagcaaaac atataacaga aaaaaatccc ataaagtaac ggagcatata taaaagtcga
     7441 accaagaatc tgatagatta gaaaaaaaaa tcctaaaaag acataagctc cattaaattt
     7501 tgctttataa gcacttaaat ttcttctcat ttatcaagac ctaaagtttg attgataata
     7561 atatcttcta aagaatcaag gccaaattta ttcaaatttg aaactaaaat agagtcttta
     7621 aattcatttt ttaacttagc tttttcactt tgatttaatt tatcgcattt ggtaaaaact
     7681 tttaaaattt tttgatcagg tcgtaaaaat cttttcaaat agtcatttaa atttacatcg
     7741 atctctaaat gagtatgtct tgaatcgatt aaatgtataa ataactttat cgaggttctt
     7801 aattttaaaa attcatctaa gttttgattc catatttctt ttaaattttt agaaaccttt
     7861 gcataaccaa accctggcaa atcgataaaa ttgatattaa atttttcttc atttcttttg
     7921 caagttactt cgaaaaaatt tataagctga gtttttccag gagttgccga acttttggct
     7981 aaattttttt gtttacacaa agaattgatt aaagaacttt ttccgacatt agaacgcccc
     8041 aaaaatgcta cttcgctaaa atttgagctc aaattctcat caaatttcac taaagaagtg
     8101 ataaatttag caccaattat catttgtctt taagatcaaa tacaaaacga gcaggttttt
     8161 gatccttgct ctctactcga taaatattag cttttctatc gactattatt ttatcaccaa
     8221 aaagtttttg attgcttcca agctcattta tataagcatg accattaatc tcgtaagtat
     8281 ctttaataac attataaata aatttatctc cactaccttt ataagtttta ccttttaaaa
     8341 caatcttaaa cctagcgttt tgcattgctt cataacgaat aggtttgcga tttttatccg
     8401 tataaataat caatttttca gaatttaaaa tatcatcacc cctaattact tctacatttc
     8461 cactaagaat actttcaccc ttattttcat ctgagtaaaa atttaaagct tttacttcaa
     8521 tttgagttgc ccaagttaca cttacacaag ccaacaataa aattatttgt cttgcaacca
     8581 cgcacttact ccttggatat ttaaaatttt gttttttata tcatagttta aagtatttcc
     8641 gttaataata cttccattga tcagagcttt aaaattagta tttgtgtgta aaattttatc
     8701 cttaggttgg tattctacct cttgagaaat aattttgaca ttattagaac ctatataagt
     8761 aacatttcct tcaaacaaaa ccttgctcat atctttattg aaaaactcta aacgattcgc
     8821 actaagatta aaatctaaat ttaaagtaat aaagtcatta aattcatctc tatctgcata
     8881 tctcacccaa gaatttgcct tataatatgc cttaattgta ctagcattac tctcataagc
     8941 tttcaaattt ttagcctcaa tatttttaaa atttaaagca ttagtttgca aattcaaaga
     9001 atacggatct tgcaaactta aaatcgtaaa agtaattgta aaaagagcaa ttaaaattcc
     9061 aaaaattttt atagccaaag cttattccat tcttctttta gatgattttt ttctactaaa
     9121 atttctatca tttgtgctac agcagcctta ccaccttgtt tgctaagcac tatgtctaca
     9181 tttaaatctt tatgaccatc ttttggctta aaactaagtc ctacactttc aagtaaagcc
     9241 ttatcgttaa aataatcccc aatagccgca cactgagaaa aatctaaatt aagtttttgt
     9301 aaaatttctt ttgcacaagc taacttatcc ttgatgcctt gatataaaat ttctattttt
     9361 aaatctttag ctcttttttc aacacaagga caatttctac ctgtaataat agcaattttt
     9421 ttaccaagct ttagccaagc ctcaatagcc gctccatctt ttacatcaaa ttctttaata
     9481 aattctccat tagaagtata aataattttt ccatcagtta aacagccatc tacatccaaa
     9541 aaaatcaatt ctgtcataat ttctattctc ttacaacaaa tgcgcctgca aatgcaccac
     9601 ttgcagcaaa atcccttgct tcatcttcac ttctaaagcc tgttaagaaa acgcgattta
     9661 acccatccac tgaacttgtg cgtatagtag agctataagt tctataagtt ttatatcttg
     9721 ctgctatcgt ttgtgctcca gctgggtttt taaaggctcc aatttgaacc atgaaatttc
     9781 caccttcata aatttgtcca ttatttgcaa tctctccact atttccatag tttacattag
     9841 aatgtacaat attattaccc gaattacttg atccaaatcc tataacctca agccttactg
     9901 gagctgttcc tgaagcaatc atatcaattt gactagcagc tccttttgat aaatctataa
     9961 tacgattatt tacaaaagga cctctatcat tcacacgaac ggtaacttga cgattgttat
    10021 ttagattggt tacttttaag atggtattca taggtaaagt tttatgagcc gcggttaaag
    10081 cattttgatt ataggtttcg ccattagagg ttttcttgcc gtgaaagcct ggcccatacc
    10141 aactcgcaat accatcagca gtttcgccta ctgctacgac agtaggataa taagttttac
    10201 cgttgatagt ataaggcttc atcgttcctt tagcccctga agaactagga ctgcttttaa
    10261 aatcatttga aggataatac acttgagcat tatccaagct agaaaaaaaa ctagtgccta
    10321 aacaaccact aaaaaataaa gcccctagac taacggctga caactttagt gtaattgttt
    10381 ttatttgcat ttttattctc cttgattggt ataattaatt tttgattaat gctaagatga
    10441 ttttttgcta ttttattgaa ttctcgaatt tcatcaacac ttatattata attttttgct
    10501 attttatata aagagtcacc agacttaacg gtataagttc ttgtcatagg tatagttgta
    10561 tcaacctttg caagtttttc tgctttaaaa tttttatcaa aaaatgctac tttattaagt
    10621 ggtatataca tataataccc tttaccagga ggcgtaaaat tatgtttaaa ttgtggatta
    10681 tatttcttaa aagttgcaag atccatattt aaatttttag ctatttcttt taaagatgca
    10741 gaagaaggca catcaacttt tgcaaattca ttgcttaaag cataattcat taaagacgca
    10801 tctttatcta gtaaaaaatc cctatcatta gctaaaaaag caagcgttaa aatctttctt
    10861 ataaaatttc tagtttctaa agaaagatat ttcttatcag ggttcaataa aacacttaaa
    10921 tcatcacttc ctgcttgctt gatagcttgt cttagcttgc catttccgca attataagct
    10981 aaaagtgcca aataccattt gccaaattct tcttttaact cttttaaata atttgtagcg
    11041 gcataagttg acttgactgg atcacgcctt tcatcaacat aagcatcgat tcttaaaccc
    11101 aaatttctag ctgttggttg cataaattgc caaaccccta cagccttggc attagaaacg
    11161 ctatgagttt tcaagcctga ttcaaccata gctagataca aaatctcatc aggaacttcc
    11221 tgctgggcta aaatttttct tatcatagga gtaacttttg aaaaattttg catactatct
    11281 attaaagttt gagcatgttt tgattttata tcttgttgag tttgcacaaa aatcaaatca
    11341 ctaataaaac ttggattaat atctaaattt cttaaaacat tcatttgtct ttcataaaat
    11401 tcaggagtat taatttgtgc aaaaagaaaa ttaaaacata ttaaaaaaca caataaattt
    11461 tttttcatta ataaccttta aaaaataatt tttcagaatt gttaaaacaa atttctagaa
    11521 gttcttttct tgataaattc aatacttcac acattttgtt tgctaccaat tgagttaaca
    11581 aaggttcatt tcttttaccg cgataaggct ctggagtaag atatggagca tcagtttcaa
    11641 gtagtagtct atcttttgga attttaggta aaatttcaac taatttctta gcatttttaa
    11701 aagttaaaac tcccccaata ccaaaataaa atccatcttc aaaaagagtt agcaaatgtt
    11761 cgcttgcatt aaagcagtgt aaaactcctc ctacaagatc cttagaatac ccatgtaaaa
    11821 tctcataagt atcatgattt gcttctcttg agtgaatgat aacaggtttt ttaaattcaa
    11881 tagcaagttc aagctgtgcg ataaaaatct ttttttgatt ttctttttct ttttgaattt
    11941 cttcagcaag atcactttta aaacggaaat aatcaagccc acattcacct acagctacac
    12001 acttttcatc gcataaatac tgccttaaaa ttttctcatc ataattatca atttcataag
    12061 gatgcacccc tgctgcaaaa aaaatatttt tatatttatg agcaattgta gctgcataag
    12121 gcaagtcttt tatatcagca ccaggtatga tgattttctc tataccattt ttaaaagcac
    12181 gatttaaagt ttcatctaaa tcatctttaa atgcttcact gtctagatgg caatgcgtat
    12241 caacaatcct taaaccatct tgaaaatcaa gatttaagaa catacttcaa ctctatcctt
    12301 gccgttatct tttgcttgag acaatatttt acttgcttta tcaaccaaag aatcaatctt
    12361 atctccactt tttccaaaaa ccacgcctat agaagctgta aaaaagactt catctaaatt
    12421 aactaaaaca ccagcttttt ttatatttac tcgtatacga gaaaagattt taatcgctct
    12481 ttcttgggat atatttttaa gtaaaataca aattttttct gcactatatc tacctacaag
    12541 atctcttcct ttagtttcat taactatttc attggcgcag attttaatta cttcatcgcc
    12601 aacttcacgg ccgtattcat cgttaatcat ttgaagatta tctatatcta agaaagcaaa
    12661 agcaaattcc tcgtcttttg ttgctatttc gttaaaataa tcatctattc catcgattaa
    12721 agcattataa tttttaaccc cagatacaag atctaaaaca ttataagtgc ttaaaaattt
    12781 tttatcatcc atgtaagata aacaacgatc taagcgacaa ttaaaacttt ctttgcttaa
    12841 aggcttaaac aaatactcat taactccatt tttaaaagaa ttcgcttcaa atgaatcatt
    12901 atgatccccc aaaagaatca cacctaattc atcatcacta aaacgttctc ttacttgagt
    12961 caaaagctca aaaccactaa ttactggcat attgacatct gctataataa gcttaacatc
    13021 attattatca tttaaataac tcattgcttc ttcaccatga gctgcagcta aaacattaaa
    13081 ttgtctttga gtaagtattt ttttaatttc attacgttca ggtagcttgc tcatagctaa
    13141 aatcacttta gtttttgcat attgattaag ttttacaata gaactaataa tctcatcaat
    13201 gcaagtttca ctttctttaa aaatataatc taatatatct ttatccataa atttttcttt
    13261 agtagcctta tcaccactag ccgtaagaac aatagcagga attttctttt ctataacata
    13321 atccacaact tcaccatttg gggcatctgg caaacataaa tccacaaaag ctaaaaaata
    13381 atcattattc attaattcct tagcttcggc aaaaccaaaa gcaatatcta cctcataatc
    13441 taaagtcatt tgaatttttt tagctaaaag tttgccgagc attttattgt catcaataat
    13501 taaaattttc ttattcatag tgtgtaaaat acctttatat ctaaaatttt taatatattt
    13561 gtttcaaaga aaggaaattt tatagttata tattctaaca tagtaaaata aaaaatccgc
    13621 ttaatcctta aacaaggtct tagcaaattc gattgcttca tcactaacaa gctctccact
    13681 taccatccta gcaagctctt taattctttc ttcttgatca agctttttta ccttactttc
    13741 ttcaccattt ttttcaacta aaaaatgatt atgtgcctta gaggaaagtt gaggcaaatg
    13801 agaaatagca aaaatttgat aaaacttaga aagttcctct aaaaccttag ctatactcat
    13861 agcctctttt ccgcttaaat ttgcatcaat ttcatctaaa aataatatcc ctttgcctgc
    13921 atttaaaata ttacattctg tggctataaa agcaagtctt aagcgattta attcacccga
    13981 acttaaattt tttaaatgag ctaaattaat atctagcatt atctcatctt tacctaaaat
    14041 tgaaattttt tcattttctt taagcgtcaa acttgcatct ttcatataaa gatctttaag
    14101 ataattattt aaacattttt ctaatttttt aaggtttttc tttcttgttt gagttaaaat
    14161 ttgtgctttt tcttctaatt tttgttttaa ttcttgaaat tttttttcaa gttctttttt
    14221 ttcaaaactt aaattttcat aatgctctag ctcatatttt ttttgtttta aaacttctaa
    14281 agcattttct atgctttcat aacgcttgat aagataggat aaattttcaa tgcgatctaa
    14341 aagcgcctcc acatcaaaat ccaaatcttc cattttttga ttttcgcaaa tcacacgcaa
    14401 ttcatttaaa cattcactaa aaaaacttgc atcaacttcg cttaaattta aagcttcaat
    14461 aacaactttt tcaagctcaa aaatacgctc tgccttactc caagcttctt ctaatttatc
    14521 ttttttagaa agcttttttt taagtattaa aagctcttca tactcaccta ttttaggatt
    14581 aatgcttgaa attttttcaa tttgcactct agctaattct tttaattctt ctactttttt
    14641 ttcttcttct aaaattgcat taagctcatt agaaatttga ctataagcat taaaatcttt
    14701 tttaaaatct tctaaaaagg aaataaaatt tgtattttct tgcatttcta aggcatctaa
    14761 gagatttaaa aatttttcat ttccaaattc gttattttcc tttgcgctta aatacttaat
    14821 aaaagtttta cttaaatttt gcaaactttt tttcgctatg ctttgattgt taataaaata
    14881 ttttgtgttt ttttctttta aaagcttaaa aacattctcc tcttcgcttt ctatgccaaa
    14941 actttctaaa tctaacttat catctagttc tatttcgaca attttagcct cactttcact
    15001 caaagaaaat gcggataaaa ttcctttaaa caaaactgat tttccagctc cacttaggcc
    15061 tgtaaaaacg gtaagccctt tagaaatttc aagctcagcc tttttaaaac caagattttc
    15121 tttcataaaa attctattta tcatcaattt ccccagtgta atttttcttt taaaatttga
    15181 aaataatccc tattttttgg gtgaattaaa gccacatttt tatcacttaa acccactttt
    15241 atacttttaa aatcattcat tttataattt tcttgcccat caatacaaag tatgcaatcc
    15301 tttgccataa tctctatttc aaaacctttt ggcaaaacaa tagggcgttg tgttaaagaa
    15361 tgagaacaaa caggagttaa gataaaagct tgagctaaag tataaactat gggcccattt
    15421 gcacttaaat tataagctgt tgaacccgca ggagttgcaa caataagccc atctccaaaa
    15481 tattcattaa atttcttttc ttttctaaaa acttctatat gagccataga agcttgattg
    15541 tttttactga tgaccacatc gttaaaagct aatttttcta aaatttttcc ttgcttatct
    15601 tctaaaaaaa cacttaacaa ataaggcttt tctattctaa attctccttg aaaaaaagct
    15661 tgaaaaaaat tttcagcttc atcaacttta aaatctgtta aaaaacctaa atgtccagca
    15721 tgaattccta aaactgcttt atcatattca caagctttac gacataaaga aatcaaagtt
    15781 ccatctccac ctaaagaaat aacaaaatca gatattttaa acaaatcatc caatccatac
    15841 tttggcaaat ctaaaatttc agaactttct ttaaacaata caagctcaac tttatatata
    15901 gataaaatcg attgaagttt taaaatttcc ttatctaaac tcacattggg tcgtgtaaca
    15961 agtccgattg ttttaatatt tttatgatct attttatttt gcataaaaaa ttatatcaaa
    16021 tcttagcaaa gcaaaagaat aaaaatacta taattttgct cattatctta aaaaatcttt
    16081 ttcaaggaat aaatttgcga agtcattata atacagactt gggaatttcc catgttggtc
    16141 aaagcgttaa actttgcggt tgggtaaata gctaccgcga tcatggtgga gttattttta
    16201 tagatttaag agatagaagt ggtattatcc aacttgtttg cgatccaaat gatagcaaag
    16261 aagctcatga aatcgcttcc aatgcaagaa atgaatttgt acttattgca gaaggtgcta
    16321 ttcgtccgcg tggcgaagga cttgtaaatc ctaaattaaa aacaggagaa atcgaagtag
    16381 ttgtttctaa acttaccata gaaaatgaaa gtgccgtacc tccttttgct atcgctgatg
    16441 aaagtgtaaa tgaagaatta cgcttaaaat atcgcttttt agatttaaga aatcctaaac
    16501 tttatgaaaa ttttgccttg cgttctaaag cttgtatagc agctagaaat tctttggcaa
    16561 atatgggatt tttagaagtt gaaaccccta ttcttaccaa agctactccc gaaggtgcaa
    16621 gagattatct cgtgccttct cgtgtgcatc agggtgaatt ttatgctctt ccacaaagcc
    16681 ctcagctttt caaacaactt ttaatgtgta gcggttttga tcgttatttt caaatcgcaa
    16741 aatgttttag agatgaagat ttaagagctg atcgccaacc tgaattcaca caaattgatg
    16801 ttgaaatgag tttttgcgaa caaaaagatg taatcaatgt agctgaaact tttttaaaag
    16861 atattttcaa agcttgcggc aaagaaattc aaaccccttt tagacaaatg caatacaaag
    16921 acgctatgga aaattatggc tctgataagc cagatttaag atttgatctt aaatttattg
    16981 atgtgattga tatttttgct aagtcaaata atgaaatttt tgcaaatatt gccaaagata
    17041 caaagaaaaa tcgcatcaaa gccatacgcg ttccaaaagg cgatactatt ttttcaaaaa
    17101 gacaaatgca aagatttgaa gaatttgtgc gtaaatttgg tgctcaaggc ttagctttta
    17161 tacaagttaa agaagatggg cttaaaggtc cactttgtaa attctttagc gaagaagatt
    17221 taaatgagct aagcaaacgc tgtgaacttg aagtaggaga tgtggtattt ttcggtgcag
    17281 gagctaaaaa aacagtgctt gattatatgg gaagatttag aattttctta gccaacgagt
    17341 taaatcttat agatccaaat gccttagaat tcttatgggt tgttgatttt cctatgtttg
    17401 agcaaaatga tgatggaagt tattctgcga tgcaccatcc ttttaccatg ccaaaaaata
    17461 tcgatgagac tgatttagaa gaaatttcat ctattgctta tgatgtagtg ttaaatggcg
    17521 ttgagctagg tggaggtagt ataagaatcc ataaaaacga tattcaacaa aaagtattta
    17581 aacttttaaa tatcgatgaa gaacaacaaa aagaaaaatt tggtttcttg cttgatgctt
    17641 taagttttgg tgctccacca catggaggta tcgctatagg acttgataga ctcatcatgc
    17701 tagttacagg agcaaacagt ataagagagg ttatagcctt tccaaaaacc caaagagcgc
    17761 aatgcttaat gacagatgca ccatcgcctg ctagcaatga agcaatgaga gaattgggaa
    17821 tcaaattaag ggagaatata aaatgaaaga attgttttta atcataggtg caccgggtag
    17881 tggaaaaact accgatgcta gtttaatcgc acaagcagat gcgacaaata tcacacacta
    17941 ttcaacagga gatcttttaa gagctgaagt agcaagtggg agtgagcttg gaaaaactat
    18001 agatagtttt atatccaaag gcaatcttgt tcctttagat gttgttgtaa atactatagt
    18061 ttgcgcacta aaagctgctc caactaaaac tattatcatc gatggctatc caagaagcgt
    18121 agaacaaatg atggaatttg acaaggtttt aagtgagcaa aatgaaattt gtcttaaagg
    18181 tgttatagaa gtaagagtaa gcgaagaagt tgccaaagaa agagttttag gcagaaatcg
    18241 tggtgcagat gataatgaag aagtgtttta taatagaatg aaagtttata cagaaccttt
    18301 aaatgaaatt ttagattttt atcaaaagaa aaaacttcat tttattatcg atggggaacg
    18361 cactatcgaa cctatcgttg cagacatgaa agaactgatt aaaaaaattc aaagtatata
    18421 aggagaaaaa atggatttaa gcaaaatcaa aatcggagat attccaaata aaatcaatgc
    18481 cgtaatcgaa attccatacg gctcaagcat caaatacgaa atcgataaag atagtggtgc
    18541 tatcatggta gatcgcgtta tggctagtgc gatgttttac ccagcaaact atggttttat
    18601 tgccaatact ttggctgatg atggtgatcc tgtggatatt ttagtgctta atgaatatcc
    18661 tatccaagct ggagccgtga ttccttgtcg cttaattggt gttttaatca tggaagatga
    18721 aagcggaatg gatgaaaaac ttcttgcagt tccaaattca aaaatagatg caagatatga
    18781 caatataaaa acttacacgg atttaccaca agcaacttta aataaaatca aaaatttctt
    18841 tgaaacttat aaaattttag agccaaacaa atgggttaaa gtgcaagatt ttaaagatga
    18901 aaaagctgca attgaaattt tagaaaaagc aatcaaaaac tacaaataat cctagccctt
    18961 caaagggcta aactcaagga aaactcgcaa tgaaaaatat cgttttaggt ggtggttgtt
    19021 tttggtgtgt tgaagccgta tttgaacgcc taaaaggtgt aatcgatact gaagttggat
    19081 atagcggagg aaatccaaat cctagctatg aaagcgtgtg taatggtgat ggtaacatag
    19141 aagttgtcaa aataaattac gatgaaaaac aaatctctct tcttgaaatc ttaacactct
    19201 tttttaaaat tcatgatcca acaagtatag ataaacaagg tggagatatt ggtatacaat
    19261 atcgctcaat aatcttttac gaaaatgaag aagataaaat tttagctcaa aatttcatcg
    19321 aagaacagca aaaaatattt agcaaaaaaa tagttactaa aatttcaaga ttgcaaactt
    19381 actacaaagc tgaaaactat catcaacatt attttataaa taatcccaat caaggatatt
    19441 gtcaagctgt aatagctcca aaactgcaaa aaatacaatc agactaattt catcttttta
    19501 aggttaaaaa aatttcaact ttattcacag ccttttcacg ctgtgatttt cttttcaaag
    19561 tacttaaaaa tagaacttta agctttaaaa taaagaaaaa attatttatt gttttttaag
    19621 tttttttatg aatttgtatt taaatgtgaa taattttatt aattaacata atttcctaag
    19681 cttagctata aaaaatccat catagtctaa gcttggtaaa atccgtctac attttgaaat
    19741 ttcagcaaat tcttcacttt gccctgcttt agcctcaaca ttttccaaat caatatctaa
    19801 aagctctaat ttaaactcgc tttttaaagc attctctatc acttcttcat tttcttcctt
    19861 ggtaaaggtg caagtactat atacaagctc tccgcctatt tttaatgcct ttaaagcaga
    19921 atgtagaagt tttttttgaa tttttgcaat atttttgatt tctttataac ttttttccaa
    19981 atcaaaacct attttagcaa aagttgaaca aggtgcatca agtaaaattt tatcaaattt
    20041 taaaggacat aaattgccta tatttttacc atctttcata aaaactttag cattcacgcc
    20101 gtaattttta agattttttt gcaaaataaa aaatctatcc ctactcatct cattgcaagc
    20161 taaataacct gtattttgca taaaatttgc aagattgata cttttgccac ccggagctgc
    20221 acacatatca agaacacttt gccctgcttt gacctctaaa tttaaagcac acaaataaga
    20281 agaataattt tgtatataaa agtgcgcctc gttaaaagct ttcatagagc ttaagatggc
    20341 tttatctttg gcgtcaaaca aataacaata agcgttgatc tttttaaatt ttaaattttg
    20401 ttttaaaaat tctttttcta attcttcaat gctagttttt aaagtatttg caaatacaca
    20461 aacatttttt tcttgagcaa aagaagataa aatattttgc atttcatctt tagtataaag
    20521 tttttctatt ctagagagca aaataatcct ttatcatgat aaaagcggat aaagagtcta
    20581 atttaccatc ttttttgcgt gtattggcta cgccgtatcc taaagcttct ttacttgttc
    20641 cactttcatc tacaaagcaa atttctttat caaattcaag caaagataca aaatgcttaa
    20701 tgcgtcttgt catttcttct tcgcttgatc cacccttagg aatgcctaca atgagtaaag
    20761 aaatttcatg tattttaagt aaatttttga tttcattggc agcttgattg cgattttttc
    20821 ttaaaactgc atctaaaggc aaagcgatct ttttatctac gcaaagcgct acacctatgc
    20881 gttttaaacc tacatctaaa gccaaagctc tcatactaaa acccttataa aaagcccttc
    20941 gatggaaatt tttccctcaa gttcatattc ataaactttt tgtccataaa tttttaaagc
    21001 ctcatcaaca ctcacacctt ttttacaaaa ctctaaaaac tcatcttgat ttgtatctat
    21061 acttgcaaac tcacttacaa attctttaaa atcacaaatt aactttgctt tattttcctt
    21121 taaaagcaaa ttagtccctg tgctttctcc tagtctttgc ggtaaaacat ataaaggttt
    21181 attgagttct aaagcaagtt ttgcactttg catagaacca ctttttatat ctgcttgtgc
    21241 aaccacaacg gccttgctta aagcaataac caaacgattt cttagtaaaa aatcataatt
    21301 ttttggcaaa taatcatctt cgtattcgct taaagctaaa gcattttcat aaatttgttt
    21361 aatgattttt tcattagttc ttggataaat ttgatctaaa ccattggcaa aaatacctat
    21421 agtatttggc atagctgcta tacttgcggt gatatccaca cccaaagcac caccacttac
    21481 cacacaaaga tgggcatttt taagcatgct cgctaaggaa aaaacacaat ttttcgtata
    21541 aacactcata cgccttgaac ctataatagc gattttatct tgttttaata aagataaatt
    21601 tcctttatag tgtaattttt taggaggttt ttttaaatct ttaaaaagtt ctaaaaattc
    21661 atcaggcaaa atttcacttg ccataaattt cactcaaata cacaagatca acgcctttta
    21721 acaaatcctt actttgctct aaagctttaa aagtattttt cctaggatgt cctatggcta
    21781 taacaaaacc ttttttttgt gcaagtttta ccgcactttt aagttgtttt ttaacataat
    21841 taacatcatc ttcattatcc aaaaacacat ctctttgtat ataaggcata ctgagttctt
    21901 tagcgatttt atttgcctta gaatttccta tagttttaga atctacaaaa aatatatttt
    21961 gattttttaa agcctcgtaa agctttctca tagcttcttc attgcttgta aataaacttc
    22021 ctgtgtgatt attgatatat cttaaatcct taaaatcttt tttaatttgc ttgatttttt
    22081 taaaaattct ttctttgcta tcatttggat ttaaagtatc aatttctggt ttattataat
    22141 taattgctgc taaaggtaaa tgcaccatat aaaaatcaaa ttttaaagca agttttggcg
    22201 tttcactatg gtttttatct ggcggaaaaa aagaaggatt taactttaaa tttaaagctt
    22261 ttaaacctct aacctgactt gcatttgcca tatcatcgat aataatagca agttttggtt
    22321 ttttagaaat tttatttaaa tgaatatctt catcaaaagt taaattttga tcttgggtta
    22381 aatttgtatc ttttggaata aaattttgtt ctaaactctg attttgctct aaacttaaat
    22441 tctgctccac actgcttaaa ttttgctcat ttaaacttgt atttaaatca tcgatttctt
    22501 gaattttttg ctctaaaata cttacagatt tattattatc aaactcattc tcttgaaaaa
    22561 taccaatttc ataatgatct ttatttgatg aaattaaatc ttcttgttta tcaataaaat
    22621 aatccggctt aacagaaaaa acatcttggg aattttgata ttttactaaa attcccaaag
    22681 ctaaagctat acaaagtaaa aaaagtatag ctatgattaa ataacgctga atttgaacta
    22741 attttttctt tgacaatgtt taattcttat ctttatctac taatttttta gcactgatcc
    22801 aaggcatcat agcacgcaaa ttgcgccctg ttttttctat caaagaatca ttcatatttt
    22861 tgcgttctgc atgcattcta gcaaaacctg cacggcgttc taagataaaa tcttttgcaa
    22921 aaacaccatt ttgtatatct tttaaaacac ctttcatcgc ttttttagtc tcttcagtaa
    22981 caatctttgg tcctgtaata taatcgccgt attctgcagt atttgagata gaataacgca
    23041 tatctgcaat accaccttga taaatcaaat ccacaatgag tttcatttca tgcaaacact
    23101 caaaataagc catttcgggt tcataacctg cttcaaccaa agtctcaaaa cctgcttgaa
    23161 tcaaagcact aagcccacca caaagcacag cttgttcacc aaaaagatct gtttctgttt
    23221 cggctttaaa ggttgtttct ataatacctg tgcgtccgcc cccaatcgca cttgcataac
    23281 ttaaggctaa atttttagca tttttacttt catcttgatg gatggctatt aaacaaggag
    23341 ttccacctcc taaagtaaat tcatttctta ctgtgtgtcc tggtgcttta ggtgctatca
    23401 tgataacatc tatacctttt ggagcaacaa tttgaccata gtggatatta aaaccgtgcg
    23461 caaaagctat agccttgcct tcacttaaat ttggttttat ttcgacatta aaaatatctg
    23521 cttgaatttc atcaggagct aaaatcataa ccacatctgc tgtcttagaa gcctcgctta
    23581 cactcattac ttcaaaacca gcattttttg ctttaacagc acttacacta ccttcacgaa
    23641 gtccgataat tacatttacg ccattatctc ttaaattcat cgcatgagcg tgtccttgag
    23701 agccaaagcc tataattgct actttttttg atttgattaa atttaaatca caatctttat
    23761 cataatatac tgtaatagcc atattcactc cttaaaaatt caaaaattaa aggtattatt
    23821 atagcaatta aagtataaat ttcatatttt ttttataaac tttatgtaag aattttacaa
    23881 aaaatcataa agtatcaaaa gtgaaagaat ttttaaacag tcttagttat ggcattagct
    23941 ctcacgaagt aagcaatgaa tttaaacaaa ttttaagaga gcttttagct aatcatatca
    24001 tcaaagaaca caaaaacaaa tactatctta acaatggttt tgcctttgga gtacttgata
    24061 tttcaagcaa aggcacaggt tttttacaat gctttgatga aagtttcaaa aaagatcttt
    24121 tgatagaaaa caaaaaccta aaaggtgcaa actataaaga tatagtcgca gtaaaacttc
    24181 tacctttaaa gaaaaaacgc cccagtgcaa aggtgatttt agttctaaaa agagccaatg
    24241 aaacctcttt agtgatcacc aaaaggtacg gcgaagccgt gcttggaatg aatatcaaaa
    24301 caggattaag cactgcctta aaagcttctc aaaaatcctt aaaagcacta cctttaggga
    24361 caattttaaa aatagaaaat gaaaataaca atatcataga agttttagga catatcgatg
    24421 atgaaagcgt agatgaaaaa atctccttag ctctttttaa taaaaataac gaatttagcg
    24481 acgcttgcat caaagaagct ctagcaaacg gcgatagtgt tgatgcgagt atgtatgaaa
    24541 atcgcatgga tttaagagcc ttgccttttt gcaccataga tcctatacat gcaaaagatt
    24601 ttgatgatgc gatttatttt gacatccaaa aacgagaaat ttatgtagct attgctgatg
    24661 ttagcgaata tgtttatgct tatagtgcta tagataaaga agcaagaaat cgtggatttt
    24721 ctatttattt tccacatatt gctataccta tgctacctcg tcctttaagt gaaaatatct
    24781 gttctttaaa acctcattta gatcgcttag cgtattgttt taaaatcgca ctcgatcatg
    24841 aaaataaggt cataaaagaa gaactttttg aaggtattat caactcaaaa cgccgtttta
    24901 attacgatga agttgatgaa attttgatac aaaaacctga tttaaaagag ctttcatggc
    24961 tttatgagct ttttgaaatc acaaaaaatt tacgcaaaat gcgtcttaaa aatgcctttg
    25021 aatttcgcac cgaagaatta agaatgaatt tagatgaaaa tttaagtcta aaaagcacag
    25081 tttttgaaaa agacacgcct tcgcataatt taatcgaaga ttgtatgctt ttagctaata
    25141 aagccgcagc aaaactcata gatataggtg tttttaggaa tcacttaagt gctgatgcaa
    25201 gaaaaatcga taagctttta aatgaattac gcgaactagg catcgatgta aattttaaac
    25261 ccaatcttcc tgaactcata cgcgacatac aagctttatc cgatgagtta aatttaagag
    25321 cagaagtaga taaactcatc atcaaagcac aaaaaaaagc ggaatactct agcataaatg
    25381 cggggcattt tggcttaggt tttgataaat actcacattt tacaagccct ataagaaggt
    25441 attctgatct tattttacac agacttttaa aagccaaaca aaaaaacgat gaaaaacttt
    25501 ttaattatct acttttaaac atagaaagca cttgcgagag tcttagtacg cttgaaagag
    25561 aggcggataa ggttgctttt gattttatgg atagaaaatt tgctagatgg gcagctaaaa
    25621 atataggcaa aaaatttaaa gctttagttg tgcaaaatga tggagtttgc atagctaaac
    25681 tagatgatga aatcaaagga gcagatataa tcctttatga tacacgtgtg aatttgctag
    25741 aaagtgttga agtgcaaatc atggaagctg atatagttat ggcaaaaatt tatgctaaaa
    25801 tcacccaaag acttataaag gaagaaaatg tatagaaaag agcttcaaac cctactttct
    25861 aaagattcaa tacctaattt tttctttctt tatggagcag ataattttca aagcgaactt
    25921 tatgctgaat ttataaaaga aaaatataag cccgatgaaa ctttaaaact tttttttgaa
    25981 gaatacaact tcactcgtgc aagtgatttt ttaagcgcag gatcgctttt tagcgaaaaa
    26041 aaattactag aaatcaaaac ttctaaaaaa attccaacaa aagatcttaa aattttagtc
    26101 gaactttgca aaaacaatac gaacaatttc tttcttttag agctttatga tgaaaattct
    26161 aaacaaagcg atatagaaaa aattttctct cctcattttg caagattttt caaagctaac
    26221 ggagctaaag aaggcgtgga gcttttaagt ataaaagcaa aacaactagg ggttgaaatc
    26281 actcaaaatg ctttatttac cctttttaca agttttgatg agaatttata tcttgctgcg
    26341 agtgaactta ataaatttag cggtttaaga gtagatgaaa aaaccataga acaatactgc
    26401 tatagtttga atacaggaag ttttgaaagc ttttttgaga aaattttaaa aaaacaagac
    26461 tttaaaagcg aacttgaaaa aattttagac aattttaatg aaattgcttt aatcaactct
    26521 ttatataatt ctttttatcg tttatttaaa atcgcacttt atgctaaagt caatggtaaa
    26581 atcgatttta aagatctttt aggctatact ccacctcctc aagtgggaca aaatttaagc
    26641 tctcaagcct ttagtttaaa aatagaacaa tataaagaaa ttttcactct tttacttaaa
    26701 tgcgaatacg agcttaaaac caattctaag ctcgtaaaaa aagaattttt gatttcaaat
    26761 ttacttaaac ttgcaaggat tttgaaaagc taaatagtaa aattataaaa attaaaatca
    26821 ctttttttat tataaaacta aaaaatgttg ctataatact tttaataaaa acaaaaggaa
    26881 tgaaaatgga ttttgaaaat caattaaatg ctatcgttga aacaatagct gaacgcaaaa
    26941 cacttgtcaa tactgaagaa gctacaaaaa tgacttttat aatgcctttt ttaaaaacat
    27001 taggttatga tgtttttaac cctagtattg ttgtgccaga atatacagca gatataggaa
    27061 ctaaaaaagg cgaaaaagtg gattatgcta ttttcaaaga ttcaaaacct tttattttaa
    27121 ttgaagctaa aaatcatact gaaaatttag ataatcataa caatcagctt gtaagatatt
    27181 ttaacactaa tcctagtatt aaatttgcca ttcttaccaa tggtattgaa tatagatttt
    27241 ttacagatat tgaacaacaa aatcttatgg ataaaatacc atttttagtt gttaatcttg
    27301 aaaaacttaa acctagagat attaaagatc taaaacgttt tatttgcact gacttaaact
    27361 tagatgaaat tctaagcatt gctatggaga aaaaatatta ccgaagtata caagaaattt
    27421 ttaaaagtga aatagaaaat ccaagcgatg aatttacaag tttttttgct aaacaaatga
    27481 cagaaaaaag aatgactagt gctgttttag aagaattcaa aaattacatt aaaaaatctt
    27541 ttaaagaaat tattaatgat ttagcttatg aaaaaatcac aagcattaaa aacaatcttc
    27601 aaaacataaa cgatgatgaa aatgatgagc aaattgatga aagtaaagat attgtcacaa
    27661 cagaagaaga attacaaggt ttctatatag taaaatcaat tcttgctagt gtcagcgcca
    27721 atcttgaaga tgtaagttac aaagatactt taagctattt tagtatttta tatcaaggca
    27781 aagttactaa gtggatatgt agattatatt ttaatacaag caaaaaatct attagttttc
    27841 cggatggagc aagttataat atagaaaaat tagaagatat ttatcaatat aaagcagata
    27901 ttatcaaagc atttgaaagc agaaagtaaa atcatttatt gattttactt tcactccatc
    27961 acaagtcgca taagatgtaa gtcctcacct tgtgtgattt tatattctat actttgacat
    28021 ttaggacact taaaaacatt ttcttctaaa atacttgttt gatcgcattt taaacataaa
    28081 atttcaagtg gggcaagttc tataaaaagt ttagcatttt tacaaatatt tgagttttct
    28141 ttaaaagttt caaaacaacg cttaaaaaga tcaacttcta taccgcttaa acgcccaatt
    28201 tttacataaa tttcttgtac attgtaagcc ttattgttta aggcattttc ttcacaaagt
    28261 tcgattaaag attctactat acttaattcg tgcattagca aattcttggt aaaagttcgc
    28321 ctttagggct ttctaaaaag cgttttgctc cataagcgtt ttgtaagatc acgcgtgctt
    28381 ttttctcttc taaaacttct cctataatac tcgcatttac attgtatttt tttagaattt
    28441 ccaaggcttt taacccatct tctttttcca cacaaagtat aaaagtgcct tcatttgcaa
    28501 gctcataggc ttcataacca aaaagctcgc aaagtcctaa aacctcatct tgaacgatga
    28561 ttttttcttc aaagatcaaa agatcatttc cactttgctt tgcccactca tttaaaaccg
    28621 cactaagtcc cccacgagta gcatctctca ttgctacaac ctttatatct ttttctaaaa
    28681 gctctaaaac ctctttatct aaagccttac aatcactttt aacattagct tctaactcat
    28741 ttcttttgat taaaacacta gctccatgcc ttcctatatc acctgaaaga agtatgctaa
    28801 gccctgcttt gatattttta ctttcttttt tagaaataat ttcacctaag gctgtagtgt
    28861 tgatataaat ttcatctgct ttacccttag gaacaacttt agtatcgcca caaactaaca
    28921 taactccaca tttttcacat tcttctttaa tgctttttaa aatacgttct aatttttcta
    28981 gctcaaaacc ttcttctaag ataagcccta agcttagata ttttggctta gcacccacca
    29041 tcaaaacatc attaatagaa ccacaaacac aaagtttacc tatattaacc tcttcatcta
    29101 aaaaaatcgg acttaaaaca aaagaatccg tgcttaaagc caaatttccc aaaatcgctg
    29161 catcattatt tgcgtttaaa atttcattat caaagatctt aaaaagctta gttaaaagct
    29221 cattcatctc ttctccaccg cctccgtggg ctaaggaaat atttttcatg cattcacctt
    29281 tgagtattta taatacgccg cacaagcacc ctcgccagaa accatacaac ttcctatagg
    29341 acttcttggc gtacaagcct tgccaaaaac tttacaatca taaggcttgg ccaaacctct
    29401 taaaatttgc ccacaaatac aggctttgct ttcattttta ctttgcaccg cacaatcaaa
    29461 ttttttactc gcatcgtaag cgctaaattc ttcttttaac tccaagcctc catctttaat
    29521 aagtcctaag ccacgaaatt caaaatcaca caccctaaag tattttttta ctaaattttg
    29581 tgctttaaca ttgccttctt tgcttacggc tcttttgtat tgattataca ctttaaaagt
    29641 gccttcattg ctttgtttta tgatatttaa cacactttct aaaatatcaa ctggctcaaa
    29701 accactcacc gctatagggg ttttaaattt tgctgctaaa ggctcataaa taccacaacc
    29761 tgttatcaca ctcacatgag aaggacctaa aaaagcattg atttttacat tttcatcatt
    29821 catgatcgct tctacaggtg ctggaactgt gatatgattg atatgaaaaa agacattatt
    29881 tattttttct tctataacct tttgaagaag taaagcactc ataggcgtag tagtttcaaa
    29941 acctatagca aaaaagatga tatttttgtt taaattttgc ttagcaattt ccaaaacctc
    30001 aagtggagaa taaagcgctc taacatcagc ccctttagct cttaaatcca gtaaagaaat
    30061 ttcacttcca ggcaccctta aaagatcccc taaagtacaa aaaatcgtat ctttcatgga
    30121 ggctaacttg atagctgtat caatgcgaac tcttggcata acacaaacag gacatcctgg
    30181 cccatggata aagttaattt cctttggcaa aatagaaggc aaagcatatt tcatgatact
    30241 atgcgtatgc ccaccgcaaa tttccatgat attaatagga tttttaagtt cttgttctat
    30301 gagttttttt aaagctaaaa tgctttcttt atctctaaat tcatcgatga aattcattta
    30361 aacccaaatc tccttcatca ctttttatct ctccactatt cattttttct actatttctt
    30421 gataggtttt aatgctttct agtgcagctt ctttgtcgat tttttccata gcaacgccta
    30481 catggattaa tacataatcg ccttgtttta aaggttcatc aatcaaatcc aaattaactt
    30541 ttcttttcac gcctaaagtt tgtactaaag cattgtttaa ctcatcgatt tctaaaattt
    30601 cagaaggtat agacaaacac attaaaaaag ctccttttta agtttaagca ccttatacca
    30661 aagctccata ttggtgccat tttttgcatc aagggtgata atatctgctc taggatttaa
    30721 ttctttaatc aacctagtcg cctctttaat atcgaaatca aaatgatggg ccaaatctac
    30781 ctttgtgatt aaaactatat cagccttttt aaacatcaca gggtattttt gcggtttatc
    30841 acttccttca gttatcgaaa gcaaaaccac atttaaatgc tctcctaaat cataacttgc
    30901 aggacaaacc aaatttccaa cattttctat aaaaagcaaa tccacatcat caatggctaa
    30961 atgatgcaaa gcctcatgca ccataaaagc gtccaaatga cagctttgtc ctgtagtgat
    31021 ttgatacgcc aaagctccgg cattttttac ccttagagcg tcattattgg tttctaaatc
    31081 cccttcaatc acagcaattt taagttcatt tttcaaagcc ttaatcgtgc tttctaaaag
    31141 cgtggttttt ccactacctg gggaactcat taaattaata caaagcgtgt tagcttcatt
    31201 aaaatgcgct ctattgtgct tagcttcttc atcatttttg cttaaaattt tagaaatcac
    31261 ttctatggtt ttgctttctt ttaaacttgg attttcatga tggtggtcgt gatgatgacc
    31321 atgcgtatgg cttgaattta tagagcagcc gcaatcttta cacattttct ttccttatat
    31381 attttttgtt tcattttaac cttaaaagca ttaaaaaatt atgagttttt agaatatttg
    31441 ctttattttt ctaaatttaa aaaatgcacc atttgtccta aggctatgga actatcatta
    31501 caagggtact ttaaaggtat aaaaaaatca aaatttttag cttttaaaat ttcaagcaag
    31561 gttttgtttt gaaaaactcc tccacttaaa agcactttta aatcataatc tttgctaaaa
    31621 tctatgataa aatttgctaa ggcattaaac atacctgtaa ttgccttagt tttttcatct
    31681 tgtaaagccc ctaggattaa atttttaaaa ttagcctgcc ctttttctat aaaaagctta
    31741 taagaaaaat caagattttt atcataaaaa gcttcacaca ttaagccaac ttgggcttca
    31801 taagaacttt tttctaagtt aaaaacaata cttccaaaag catcgataat gcgtcctaaa
    31861 gagcttgttt gtaagttaga ttgagaataa atttttttaa gattttcaag tttgattttt
    31921 ggaatttttg ctaaaaactc cttagcctta tcttctaaat cataatgaaa aataagactt
    31981 agagccaaat tttgtatatt tttaatatca ctatttataa gagtgaaatt ttcaaaatgt
    32041 gcaattcttt catattcttt taaatttcct acaaaaactt ctccacccca aattttgcca
    32101 tcttcgccat aacctgttcc atcacaaata aaagctaaag ccttttcatc ttttgcaaaa
    32161 ttttcttcgt attcaaaata agccgcacaa aaatgcgcat aatgatgaga aattttaatc
    32221 ctttcttcaa attcttttgc atagctaaaa tgcgggtgtt tatcgcacaa aatcgcatca
    32281 aatttcaaat cataattttg tttaaaaaat tctaaaagtt taaaaaatct ctcatgcaca
    32341 tcaagacttt tcaaatcccc tatataagga gaaattaaaa gtttattttc ataaaaaatc
    32401 acaaattcat ttttaagttc cgcacccaaa gctaaaaaag tgcctttttt attaaaattt
    32461 ctttccaaat aaaaggggtt taaacccctt gaagtacgca aaaacatagt tttgccattt
    32521 accacttgag cgatgctatc atcacttgca ttgataattt ccctatcata atccaaataa
    32581 aaatcaaaaa ctttatcaag tttttgacgc aaattaaact catctttaat gatactttct
    32641 ccgcttaaat tcgcacttgt tgccacaaga tttcctttaa aatactcaaa aagcaaaaga
    32701 tgtaaaggcg tataagctag cataatgccg attttatcta catcaggagc gattaaagaa
    32761 aaggcttttt ttgcctttaa aatcacaata ggagccaaaa ccccaccaag caaagcttct
    32821 tctttttcat ctataaaggc aagttcttta gcactttgta aatctttaca catcaaagca
    32881 aagggttttt tggggcgatt ttttctaagt cttagagttt ttaaagcttc ttcattaaac
    32941 gcatcacaca tgagatgaaa accgcccatg cctttaatgg ctaaaatttt accttccttt
    33001 aaaaacttcg cactttgtat aaaagcttct tgatctttgg ctaaaatttc accctttgga
    33061 tttttaagaa aaacattgat tttgcattta ggacaactaa taggctgggc atgaaaacgc
    33121 ctatttttag gatcttcgta ttcgctttta caaaactcac acatcaataa ttcttgcata
    33181 gaggtattaa atctatcata aggaagactt tttataatac taaagcgtgg cccacaatgt
    33241 gtgcaagtga taaaaggata taaaaagcgt ggattttttt catcaaaaaa ttctttttta
    33301 cactccttac aaaacgcaaa atcgcttaac ataggcgtgc tttttgtatt ctctaaagaa
    33361 ggagtaatgc taaaattctc atagtttgaa attgaaattt gcgtgattat aagctgatct
    33421 attcttgcta aaggtggaag atgatttttt aaattttcta tgaaattttc acattctttt
    33481 tgagtgcaag caaggatgat ttctatccca aaaccatcat ttcttacttc tccaaaaagc
    33541 tttgatttca aagctagttc ataaactaag gggcgaaaac ccaccccttg aactagacct
    33601 gaaattttga tcttataccc taagtggcgc atcgcttaac tgacaatttt taagatgttt
    33661 taaagtattt ttaagtaaag atttatgttc aaacaaagat ccacttataa gtgctaaatc
    33721 actttgcttt ttctctctta attcatcata agtatcacgc aagaaataag ccaaactctc
    33781 aaccgctcca taagcgatat tagcactatc tacacctgct aacataaaac tcatggcaga
    33841 tcttaaagtc cttgtataat caaaactttt atcttctttc aaacgataat caatctttac
    33901 tccacgaggc atttttgact catcagcgat ttttaaaagc tcactagcac tctcttgtaa
    33961 atttctaccc aaatttagca ctctacccag caagctaagc aaggaataaa aattgttttg
    34021 aagctcaaaa ttttcatcta aaagaggaaa ttccttgtta aaattttcta aaagccttgc
    34081 accaatttca tcttttttaa tctcttcata aagttctttg ctgtgttttg gtaagcaaag
    34141 tttaagtaaa ttaagctctt tattgataag caaaatatct tcataatcct tacttagctc
    34201 taaaataaaa gctttttctt tataacggct tacaagataa gaaattcttg ccatattttt
    34261 atcttcttta gaaaaaataa gctctcttgc cttagcattg ataaattcaa aaccctctaa
    34321 aaccaccact tgctcatcta aagcactgat ataaaaatct ttttgatact cttctatctt
    34381 ttttacgctt aaaaatttat actcattttc aaaaagtttc aaacctaaag caaaacaaaa
    34441 taaatcccta gcaagtctaa ttttaaaatc actaaaatca agattgtgat tttttctaaa
    34501 catagcatta agccttagct tcatcaaagg tttttctaaa cttgcaagaa gttttaaatt
    34561 ttcatttgaa caaacaaaaa ctgaatttat agccttaata tcacaaggaa gtaaaaaatc
    34621 tcctataaat tcgttcttaa acaaagaaaa ttcataaata ccatttttat ctttcaaata
    34681 aatctttttt tcttgactta acaaatcaaa ggcaagattt aaaaaagtat tgaaattttc
    34741 ttcattgatt ttttcaaatt ctgataaatt gcttgaaaat tcacactcac aaaacacgcc
    34801 ccattcgttt ttgtttaaaa gttttttttc ttgataagca ttagaattta aatgagtaat
    34861 ataagaaaat cttgaaaatt ctttatcttc tggtatacaa gggttaaaac cctgccccgc
    34921 ttttacatca aattttttca aaaaaacgct atgactcatg aaattcaaag aatcgcaaaa
    34981 agtctttaaa ttttcttcat ctgcatcgat agaaaaatga taagtatttt cttctttact
    35041 aaggatataa ttgtaatttt tcgcataaaa acgcaataaa tattcaaaaa tatcattatc
    35101 tgcattataa ataaaatcaa aatccaaagt catattatgc cttttttgaa aaataaacta
    35161 taaatataac atttttaact taaaaattct ttctctcttt gcctaaaatc actcataaaa
    35221 tgctctataa aagtataaaa ttctttgcta tgattgggaa attttaaatg gctaatttca
    35281 tgcaaaatca catattcaat agctcttaaa cttttttgaa tgagttttaa atttaaatta
    35341 atataagctt tattgtgatt gcaagaaccc caacgtgttt tcatattttt aatgcttaaa
    35401 tgcgtgtaaa ataagcctgt ttttttactc cattttttaa gataaaaagt aaaaatcttt
    35461 ttagcatttt gtcttaaaaa taaatccaat tttgctttat tttgacaaat tattttatct
    35521 ttatcaaaat aaattttttt ggcattttca tcaaaaataa tttgatattt tttagctaaa
    35581 aagattaact catcatcttt taaaactttt ttttcaaatc ttgtttttgc ctcattcatc
    35641 caagaacttg atttatctaa aaactcataa acacttttaa aggtgcaaaa ataaggaata
    35701 ctaagaacaa attcaccctt ttcatttagc cttaatctta aagtttttat gcatttttta
    35761 gaataaaaat agcactcatc tttataaata aatgatttta aactagagct ttgccttgcc
    35821 attttttact tttccatctg tatgaattta ccattccacg caaaaattca tctgcacaaa
    35881 atcctatcca aactcctaaa attccaagat taaaatgaaa acaaagcaca taacccacag
    35941 gcaaagatac ccccatcata aaaacaagtc cgctaaaaaa tggaaactta gcatcgccac
    36001 ttgcgcgcaa ggaattaacc ataactatat taaaagttcg tgaaatttca agaaagattg
    36061 aaagagcaaa taaaggtatc attaaatttt ttagctcttc tttaagccct aaaatttgca
    36121 tagtaaaatc ttgacaaaga tagtttaaaa acgccactaa agcactcgct attacactaa
    36181 aatataaagc acgccaagca tgtttataag cgatattttc atatctagca ccgactaatt
    36241 tacctactat gatttcatta gctatgctcg tagcttgtcc tataagcatg ataagcattg
    36301 aaatttgaaa ataaatcgtt tgcacactca aactcgcctc acctaagctt gctacaaaag
    36361 caaaagctat agtatattgg actatccaca aaagattttc ccctgctgaa aatcctccta
    36421 tatttaaaac cttttttaaa acttcttttt caagttttat catttctttg attttaagat
    36481 gaattttaag tttataaaaa agtatcgcaa acaaagcaac tatagcaaca atgcgagcaa
    36541 aaatattact aagccctatt ccaaaaagtt ctgactttgt ataatgcaaa acataataat
    36601 ttccacaaat caccactata tccatcaaaa aacctataaa catgacccaa taagccatat
    36661 tataaaccct tacaatagca gctaaaacaa tacctatggc atcaaaaaac aaacaaattg
    36721 caagcatatg taagtaaatt tcgctatctt tgagcaattc ttgtggaatt tttaaaagat
    36781 aaagcaaata ctccccatgc cataaaataa gcacaccgca tacaaagcct aaaagtgcat
    36841 ttaagaacaa actttgatga atcacttttc ttgctaaaac atgatctttt gcaccaattg
    36901 cttgtgcgat caccacacta caacccacac ttaaaaatga aaaaatagtg ataaaaagat
    36961 ctaaaatttg atttccagcg cccatagcac caacaagaaa attagaataa tgcgacacca
    37021 tagcggtatt gataatcacg gttaaatact tagaaagcaa atcccaaaat ataggaaaac
    37081 taagtcttgt taaggagagt tgtttttttg ccatgatgtt atcttatctc tttttttaaa
    37141 tattttttta aaaaacaatt ctacttaaaa attacttttt taaatataaa c
//
LOCUS       DAPIWV010000003        31655 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.003, whole genome shotgun sequence.
ACCESSION   DAPIWV010000003 DAPIWV010000000
VERSION     DAPIWV010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31655
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.003"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            16..3504
                     /locus_tag="RJ272_000075"
     CDS             16..3504
                     /locus_tag="RJ272_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HDV7381213.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            3522..4991
                     /gene="putP"
                     /locus_tag="RJ272_000076"
     CDS             3522..4991
                     /gene="putP"
                     /locus_tag="RJ272_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDV7381214.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASAVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(5007..5234)
                     /gene="yedF"
                     /locus_tag="RJ272_000077"
     CDS             complement(5007..5234)
                     /gene="yedF"
                     /locus_tag="RJ272_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7381215.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5238..6446)
                     /gene="yedE"
                     /locus_tag="RJ272_000078"
     CDS             complement(5238..6446)
                     /gene="yedE"
                     /locus_tag="RJ272_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HDV7381216.1"
                     /translation="MNSFKQKYLINFWDNPRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            6586..6683
                     /locus_tag="RJ272_000079"
     tRNA            6586..6683
                     /locus_tag="RJ272_000079"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6620..6622,aa:Sec,seq:tca)
     gene            6711..7961
                     /locus_tag="RJ272_000080"
     CDS             6711..7961
                     /locus_tag="RJ272_000080"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDV7381217.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKHAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYTTRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            7958..8386
                     /locus_tag="RJ272_000081"
     CDS             7958..8386
                     /locus_tag="RJ272_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HDV7381218.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAREKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            8379..8897
                     /locus_tag="RJ272_000082"
     CDS             8379..8897
                     /locus_tag="RJ272_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HDV7381219.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEKQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            8990..9541
                     /locus_tag="RJ272_000083"
     CDS             8990..9541
                     /locus_tag="RJ272_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HDV7381220.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            9541..10659
                     /gene="carA"
                     /locus_tag="RJ272_000084"
     CDS             9541..10659
                     /gene="carA"
                     /locus_tag="RJ272_000084"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDV7381221.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            10656..11315
                     /locus_tag="RJ272_000085"
     CDS             10656..11315
                     /locus_tag="RJ272_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7381222.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGMLVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            11312..12523
                     /locus_tag="RJ272_000086"
     CDS             11312..12523
                     /locus_tag="RJ272_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HDV7381223.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            12526..13206
                     /locus_tag="RJ272_000087"
     CDS             12526..13206
                     /locus_tag="RJ272_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7381224.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            13332..14798
                     /gene="ccoN"
                     /locus_tag="RJ272_000088"
     CDS             13332..14798
                     /gene="ccoN"
                     /locus_tag="RJ272_000088"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HDV7381225.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            14811..15476
                     /gene="ccoO"
                     /locus_tag="RJ272_000089"
     CDS             14811..15476
                     /gene="ccoO"
                     /locus_tag="RJ272_000089"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HDV7381226.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            15481..15744
                     /locus_tag="RJ272_000090"
     CDS             15481..15744
                     /locus_tag="RJ272_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HDV7381227.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            15744..16607
                     /locus_tag="RJ272_000091"
     CDS             15744..16607
                     /locus_tag="RJ272_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7381228.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            16604..16825
                     /locus_tag="RJ272_000092"
     CDS             16604..16825
                     /locus_tag="RJ272_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HDV7381229.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWSLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            16822..16923
                     /locus_tag="RJ272_000093"
     CDS             16822..16923
                     /locus_tag="RJ272_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381230.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            16920..17522
                     /locus_tag="RJ272_000094"
     CDS             16920..17522
                     /locus_tag="RJ272_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381231.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            17509..18030
                     /locus_tag="RJ272_000095"
     CDS             17509..18030
                     /locus_tag="RJ272_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7381232.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            18027..20393
                     /locus_tag="RJ272_000096"
     CDS             18027..20393
                     /locus_tag="RJ272_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HDV7381233.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFKYFEKLLALFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSCSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYSNNDFDIKV
                     FANLLNKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            20390..23155
                     /locus_tag="RJ272_000097"
     CDS             20390..23155
                     /locus_tag="RJ272_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HDV7381234.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            23239..23664
                     /gene="rplM"
                     /locus_tag="RJ272_000098"
     CDS             23239..23664
                     /gene="rplM"
                     /locus_tag="RJ272_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDV7381235.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            23667..24056
                     /gene="rpsI"
                     /locus_tag="RJ272_000099"
     CDS             23667..24056
                     /gene="rpsI"
                     /locus_tag="RJ272_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDV7381236.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGFDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            24181..25140
                     /gene="cadF"
                     /locus_tag="RJ272_000100"
     CDS             24181..25140
                     /gene="cadF"
                     /locus_tag="RJ272_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HDV7381237.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            25140..25781
                     /locus_tag="RJ272_000101"
     CDS             25140..25781
                     /locus_tag="RJ272_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7381238.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSIVFLNAYEAVNYIARLN"
     gene            25874..29434
                     /gene="nifJ"
                     /locus_tag="RJ272_000102"
     CDS             25874..29434
                     /gene="nifJ"
                     /locus_tag="RJ272_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HDV7381239.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            29458..29769
                     /locus_tag="RJ272_000103"
     CDS             29458..29769
                     /locus_tag="RJ272_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7381240.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            29747..31159
                     /gene="mshL"
                     /locus_tag="RJ272_000104"
     CDS             29747..31159
                     /gene="mshL"
                     /locus_tag="RJ272_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HDV7381241.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            31152..>31655
                     /locus_tag="RJ272_000105"
     CDS             31152..>31655
                     /locus_tag="RJ272_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7381242.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYID"
BASE COUNT        11389 a         3810 c         5802 g        10654 t
ORIGIN      
        1 cttaggagat acgaaatgat acaaaaagct ttagccttag ctgaagaatt acaaggacaa
       61 atagaagcca atatttcaaa ttctgaaaaa gaatttcatg ctaaaatgca aaaacttctt
      121 aataatccca aaaataaagt tatgcttata gagcttttag atcgttcttt tagatgtaaa
      181 gataaaaatg caagttttga gcttatagaa tatactttga gtaaatatgg catagcggat
      241 ttttttagca cttttgaaaa attcctactt tttagctttt taaattttgg caaatttgct
      301 cctaatttaa gtgtaccttt ttttgtcaaa catttaagag aagatactaa agctatggtt
      361 ctagatgcaa atcctagtgt tttagaacca catattaaga aaagaaaaga gcaagataaa
      421 attaccttaa atgtgaattt aattggcgaa gaggttttag gtgaagctga gagtaaatat
      481 cgtatgcaaa aatacgaaga agccttaaaa tcaagctata tcacttatat ttccataaaa
      541 attactacta ttttttcaca aattaatatt atagatttta attattctaa agaagaggtc
      601 gtaaaaagac tagattatct ttatgcttta gccttagaag aagagaaaaa acaaggtgta
      661 tctaaattta tcaatcttga tatggaagaa tttagggatt tagagctcac cgttgcagct
      721 tttatggaaa gtgtggctaa atttgatatt aaagcaggga ttgttttgca agcttatatt
      781 cctgattctt ataagtatct taaaaaactt tttgcttttt caaaagagag ggttttaaaa
      841 ggtatgaagc ctattaagat ccgttttgtt aagggtgcta atatggaaag tgaagaaacc
      901 attgcgtctc aaaggggttg ggagcttcct actttttaca aaaaaataga tactgatagt
      961 aattataata aaatgcttga ttttattctt gaaggagata attataaata catcaacata
     1021 ggaattgcaa gtcataatat ctttgagatt gcttatgctt atacacgcat aagtgaagtg
     1081 ggtgctttgg attcttttac ttttgaaatg cttgaaggta tgagtttgca atgttcttat
     1141 gaattatcta aaatgcatga tctaatcctt tatgccccag tttgcgatga agcacatttt
     1201 aacaatgcca ttgcttatct tgtaagacgc cttgatgaaa atacaagtga agataatttt
     1261 atgcgttatt ttttcaatct taaagtagga gataagaact ggaatatcca aaaagaactt
     1321 tttttaaaat ctttagaagg cataaaaact cttgataata ctacacatcg taagcaagat
     1381 agaaataaag aatcaaatat cataagttct tatgaaagta aaaaatttag caatgaaagc
     1441 gatacggatt ttattttagc acaaaataga gcgtgggcta aagaaattaa aactaaatat
     1501 gaaaatttaa aagattatga tgtttatcct gttataggcg aacttgattt taaagcagaa
     1561 aatttaaatg ttttagaagt taaagataag attgaagata gagtgatagg aaaggcttat
     1621 ttagcaggag aaaaagaaat caaacaagct ttagaagtag ctaaaaattc caaatttaca
     1681 caaaaaagtc atgatgaaat ttatcaaatt ttagccaaaa gcgcaaaact tatgagagaa
     1741 agaaggggag atttaatagg tttggcagct ttagaagtgg gtaaaacctt tttagagatc
     1801 gatcctgaag taagtgaagc tattgatttt atagagtttt atccgcactc tttagaagag
     1861 cttaaaaaac aaaatccaaa agttacattc acacctaaag gtataggggt taccatagct
     1921 ccttggaatt ttcctatagg aatttcagta ggtactatag ctgcaccact agccgcaggt
     1981 aatgtggtga tttacaaacc ttcttcactt tcaactctaa caggttatat gctttgtaag
     2041 tgtttttggg attcgggtat tccaaaagat gctttgattt tcttaccttc aaaaggaagt
     2101 gatatttcta aatatttact tattgatgaa gcgattaaat tttcaattct tacaggagga
     2161 gaggatactg cttatgccat gttaaaagct aatccaacct tgcttttaag tgctgaaact
     2221 ggcggaaaga atgcgactat agtttctaaa tttgctgatc gtgatagtgc gattaaaaat
     2281 atcattcatt ctgcttttag caatagcggt caaaaatgtt cagctacttc tttgctagtc
     2341 ttagaagaag aggtttatca tgatgaagaa tttaaaaaga ctttagtgga tgctgcgagt
     2401 tctatggcag tgggcaatcc ttttgaattt aaaaataaat taggtacttt agctgataag
     2461 ccaagttcta aagttcaaaa ggccttagat gaattacaac cttatgaaga atgggcatta
     2521 aaacctaagt ttttagagga taatccttat ttgatgactc caggcataaa atatggcacc
     2581 aaaaagggtg attttactca tatgaatgaa ctttttgtac cgattttaag tgtgatgaag
     2641 gctaaagact taaaagaagc tattgatata gtaaattcca caggttatgg tttaactgca
     2701 ggttttgaaa gcttagatga aagagaatgg gagtattttc acactcacat agaagcagga
     2761 aatatttata tcaataaacc aaccacaggg gctatagtgc tgcgtcaacc ttttggtggg
     2821 attaaaaaat cagctatagg tttgggtaga aaagtgggaa tttataatta tatcactcaa
     2881 tttttagaga ttaagcaaga agattttgat gatcatttaa ttgaagataa attttcaaaa
     2941 aaattagcac aaatagattt aaaagaagca caagatttta tgaacaattt aattaaaatg
     3001 tctcaatctt atgcttatca ttataaaaac gagtttagtg tttcaaaaga ttatgtcaat
     3061 attcgtggag aagataatct tttttcttat actaaaataa agaatatggt tttaagactt
     3121 tgtggaaatg aaagcttaaa agatgtttta ggtgtggttt taggtgcaaa tattgcaaat
     3181 attgatctaa gtatcagtta tgatgaacaa gatgttagta tgatagaacg aattgttcaa
     3241 agcataggag caaaagtatt gtttttaaaa gaaaataaag aaaattttat caagagtatt
     3301 aaagaatatg aaagagtgcg ttatttagca aagccagatg taaatgatga gatttataaa
     3361 gaggctgcaa agcttgctaa aatcattata agagaaaagc cattattaaa tggtcgtttt
     3421 gaacttttaa attattttaa tgaaaaagct ttaagtatat cttttcatcg ttatggaaat
     3481 ttaggcatta gagcaatatc ttaatgatca aggagagatt gatggaagtg gttcaaatta
     3541 ataccccaat agcagtgatg tttgtagtgt atgccttatt aatgctttat ataggttttt
     3601 atttttataa gcaaaataaa aattcagagg attattttct aggtgggcgt actatggggc
     3661 ctgtgatatc tgcacttagc gcaggggctt ctgatatgag tggttggctt ttaatgggtt
     3721 taccaggagc tttatatgta agtggtttta tagattctta tattgcaatt gggcttacta
     3781 taggagctag tttaaattgg atttttgtgg caaaaagact tagaatttat accagtgtga
     3841 ttgcaaattc tttgactatt cctgattatt ttgaaactcg ttttgatgat gataaacata
     3901 tactgcgcat tgtatgtgcg gtggtaattt tgatattttt taccttttat gtttcatcag
     3961 ggcttgtaag cggagcaaaa ctttttgaaa gtacttttgg tatcagatac gattatgctt
     4021 taactactgg aacgattatt attgttgctt atactttttt aggtggatat aaggcggttt
     4081 gttggacgga tatgatacaa gggcttttaa tgatgatggc tttaattatt gtacctttgg
     4141 ttatgcttta tcatttaggt ggttttggtg aagcgatgaa tatagtaaga gaaataaagc
     4201 cacaagcttt atctatgggc gaaggagtag gaattgtaag cattatatct gcacttgctt
     4261 ggggtttggg ttattttggt caaccacata ttttagtgcg ttttatgtcg attcgttcta
     4321 ctaaagatat tcctatggcc acttttatag gtattgcttg gatggcggtt tgtcttttaa
     4381 gtgcttgtat gataggtatt ttaggtatag cttatgtgca taaatttgaa ttaagtttgc
     4441 aagatcctga aaagattttc atcgtgatgt cgcagctttt atttaatcct tggatagcag
     4501 gtattttact tagtgctatt ttagcggcta ttatgagtac ggcaagttca caattgctgg
     4561 tttcaagttc tactatagcg gaagattttt ataaaaagat ttttagagaa gatgcaccaa
     4621 gtcatattgt attaaattta ggtaaattag gtgttttatt ggtagctgta atagcgtttt
     4681 tgatttctac tgataaaaac tcaagtgttt tgagtatagt ttcttatgca tgggctggat
     4741 ttggagcttc ttttggttct gtaatgcttt tttctttatt ttggagtagg atgacaagag
     4801 taggagcgat cttaggtatg ataacaggag ctgctactgt ggtgctttgg aagaattttg
     4861 caaattcagg tctttatgaa atagttccag ggtttttagt agcttcggcg gtgattatta
     4921 ttgcaagttt gtttacaaat gtaagatctg gaactaaagc agcttatgaa aagatgttaa
     4981 aagagctttg agaacaaaag ccttttttaa ggcttttgta ttaaaaatct tagcgtgggt
     5041 ccactttgat cgatttcaag cactttaaaa ccacggtttt ttacatcttg aggtatggaa
     5101 ttgatacttt gtgggcaatc gcaaagcact tccaaaattt ctccactttt aagcttaggt
     5161 aagacatcaa gtgttgctat agcaggataa ggacaagctt caccttgtaa atttaaacta
     5221 taagtaattt tcactgttta tcctttaagt tgatttttaa aaaagtgttt tttgtaaaat
     5281 actacaaaaa caaacattaa gatgaataaa ataaggttga taaaaaatcc atttaaattg
     5341 ccaaattcag ttaaaagatt gatttttata ccttctttaa aagcttttgg taaaaagtca
     5401 taacttaaag ctaaaatcat agttcctatt atatttgcaa ttcctactat tataaaatga
     5461 ctttgtcctt caaaggcacg ataagtccaa ccacactcgc aacctccggc aaaaactata
     5521 ccaaaaccaa acaaaaatgc tcccacagct acagcaggag aaagttctat gagtttgcta
     5581 gtatgacctt gcaagataaa agcaaaagcg attaaagagg cgataatcat accgattaat
     5641 gcgcctttta tagcattatc tctaccaaat aaaaataaat ctctaaagca agaagtaaaa
     5701 caaatttgcc ctctagaaat aacaaaacca aaaacaaaac caaaaatcag tgctaaagct
     5761 agaagacttt gtttgttttg tgtgctgata ttgccatttg taaaaacaag ataaaacacc
     5821 caaactaaaa aggctatgaa aagcaatatg cctaagttaa aatataattt tgtacgcaaa
     5881 ctttgcttgt ttaacggcaa gttttcttta tttacacgtt ctaatttagc tttaggttta
     5941 aaaaaggaag tgttgcaaat tttcactcct agataaattc ctaacaccat aaaaacagta
     6001 aaaagccaag tgtgtaaaga aaaataaggt aaacctgtaa aaaaattagc taaattgcat
     6061 ccaaatgcaa gtcttgctcc atatcctgaa agaattccac ctactattgc ttgaaaaatt
     6121 cttatattgc tagcaggtag acgaaatttg actttgttag ctaaaagtgc ggctactaaa
     6181 caacctataa acatacctat gagcataata ccatcagttc ttgttaaagg ggttccattt
     6241 aaattttgct tttggtaata agaatatcca tctaaattca tacctaaaag ctctaaaaac
     6301 tcgccacccc aacgtgtcat ttctccagta acagcccaaa cgccaccaaa aatcccaaaa
     6361 tacactgcac ttaaaattcc aagtgcaatc atagaacggg gattgtccca aaaattgatt
     6421 aaatattttt gtttaaaaga attcaaagaa agatcctaaa aatgtaatca tcaaaacttg
     6481 atgctaaaaa agagtgagat tatagcttaa atttaatgtg aagtcaaaaa gaatattgat
     6541 aaatttattt tgtttttcat taaaaatcgc tataattatc actttggaag attagcgtat
     6601 ctggtgatcg ccactgactt caaatcagat gaaaggatag ttgactattc tttggggagt
     6661 tcgattctct catcttctcg ccaatattaa gtaaaatcaa ggaaattttt atgagcaaag
     6721 cagatattat tgtcggcatt caatggggcg atgaaggaaa aggcaaggta gttgataaat
     6781 tatgtgaaaa ttatgatttt gtttgcagaa gtgcaggtgg acacaatgca ggacatacga
     6841 tttgggtaaa tggtgtaaga tatgcgcttc atcttatgcc aagtggagtt ttgcatccaa
     6901 gatgtattaa tattatcgga aatggagttg tggtttctcc tgaagtattg atcgctgaaa
     6961 tggctcaatt tgaaaattta aaaggtagat tatatatcag cgatagagct catttaaatt
     7021 taaaacatca ttctttaata gacattgcaa aagaaaaact caaaggcaaa catgccatag
     7081 gaacaacagg taagggtata ggaccttctt atgcagataa gattaatcgt acaggacata
     7141 gagttggaga gcttttagaa ccacaaagac tttgcgaggc tttgataaaa gattttgaag
     7201 ctaataaaac tttttttgaa atgcttgaaa ttgaaattcc aagtgctgaa gaattgcttg
     7261 ctgatttaaa acgttttaat gaaattttaa ctccttatat tacagatact acaagaatgc
     7321 tttggaaggc tttagatgaa gataaaagag tacttttaga aggagctcag ggctctatgc
     7381 ttgatattga tcatggaact tatccttatg ttacaagctc aagtactatt tcagcaggcg
     7441 ctttaacagg acttgggtta aatcctaaag aagcgggaaa tattataggt attgtaaaag
     7501 cttatacaac gcgtgtggga aatggagctt ttcctactga ggataagggt gaagatggag
     7561 aaaaaattgc gcaaattgga aaagaaattg gcgtaagcac gggacgtaaa agacgctgtg
     7621 gatggtttga tgcagttgct gtaagatata cagcaagact taatggtctt gatgctttat
     7681 ctttgatgaa gcttgatgtt ttagatggtt ttgaaaagat aaaaatttgt cgtgcttatg
     7741 aatataaggg catggaaatc gactatatac caagcgattt agaaaatgtt caacctattt
     7801 atgaagaaat ggatggttgg gataaagttt ttggtataaa agattatgat ttattgccag
     7861 aaaatgctaa aaaatatata gcaagacttg aagagcttgc aggggttaag gtaaagtata
     7921 tttctactag ccctgaaaga gatgatacta tcatcttatg aaaagtaaat ataattctgt
     7981 tgtaaaggta agaaaacaac aacttgataa agcagaatca aatcttaatc aagccaaaca
     8041 aagacagctt gaacatgaaa aagcttatga actttcacgc caagagtgtg aaagtttagg
     8101 cgtattgcca aaatcaggat ctatagcaga gttaagatcg aatttaagta tggcgcaagt
     8161 aggacgcgag gctttggcaa gagctaggga gaaagtagaa ctttctaaaa aagaaatgaa
     8221 tcattatcag tttttatatc aaaaagcaca tttagattat gaaaaaatga aggttttaga
     8281 agccgaggaa attaaacaaa agcaaaaaga acttgccaag gctgaagaaa aatttttaga
     8341 tgaaattgca atcagtcgtt ttttcaaagg agaaaaagat gattaaaaaa tttatattgt
     8401 tagtttttat ttcaagtgta gtttttggag ctgaacaaga ttgtgagcag tattttgaag
     8461 ctagaaaagc tcaaattgaa ttgcaaacta gagaatttga tgaagcaaga caatctttag
     8521 aagcttataa agcctctttt gaagctttgc aaaaagaaag gcttgaaaat ttagaaaaaa
     8581 aagaggctga ggttaatgca actttggcaa aaattgaaga attaaagctt gaaaacgcaa
     8641 ggcttgtaga aaaacaacaa aagattttaa attcaatcaa tgataaaact caaggtaggg
     8701 ttaaagaaat ttattcccaa atgaaagatg cagccattgc agatgtttta agtcaaatgg
     8761 atgcagagga tgcaagcaaa ataatgcttt ctttggaatc gcgtaaaatt tcaggtgttt
     8821 tatctaaaat ggatccaaaa aaagctagcg agcttacttt gcttttgaaa aatttagata
     8881 ataatgctag taattaggtg attaaaataa tgaaaatttt tcatttttaa cattctttta
     8941 ccaaaaataa gctattattt caaacattat caaataaaag gtttttaaga tgcgtataaa
     9001 attaccacat attccttata tcgcaaataa aatgatgtta gatatagcta attcttcttt
     9061 tgtagaaatt aaagatcaat tagaaaagct taaggtatgt ataatagaag ttttagagaa
     9121 agatattcta aatgaaagaa aattagatga aagagtaaaa gagcttttag agcaacaaga
     9181 agatgaaatg gagcttatgc aagtagatcg taaaaatatg ttttggcttg tgaagaaaaa
     9241 gttagctcct gaatttaatg tgattttaga ttctgaagat agacataatc atctagcgca
     9301 tcaaatttta gaagaacttg tagagaatga ttatattaat tttatagtga gtgaaaatag
     9361 agttaaaaat ttaatctttt caagcataga gtcttatctt aaaatttatg aaaaacttga
     9421 agatgaggtt tatgagaaaa ttagcaatta taaaacaaaa cctattccag gtagcgaaga
     9481 gtatgatctt atctttgaaa aactctatca agaagagctc agaaaaaaag gtatgtttta
     9541 atgaaggctt atatttattt agaaaatgat atttttttaa gtgctaaggc ttttggaaag
     9601 agcggtactt tttttggaga gcttgtattt aacacttctt taacagggta tcaagaaatt
     9661 atttcagatc cttcttatgc agggcaattt atcgtatttt ccatgccaga aattggtata
     9721 gtgggaacca atgaaaatga taatgaaagc aaggaaattt ttgcaagtgg tgttttaatg
     9781 cgtgaattaa gttccagttt ttcaaatttt cgcgctaaag aaagtctgca agattatctt
     9841 gaaaaacatg gaaaaatagg aatttatgaa cttgatacga gatatctagt aaaaatgata
     9901 agaaataatg gcaatttaag agctgtaatt tcaactgaaa tttcaaataa agaagattta
     9961 aaaatcgcct tagaaaaatc agcaaaaatt gatgaagtaa attttgtaaa agaagttagc
    10021 actaagaaaa attattctca taaacaaggc gtttggaacg ctagttttca aaaatttaat
    10081 gatgctaaaa gaagtgagaa aaaagttgct gttatagatt atggtgttaa aacaaatatc
    10141 ttaaatgaac ttgtagaagt aggttttgaa gtagaagttt atccatataa tgttaaagca
    10201 gatgagttga ttactctgta taaaaaaggt gaaattcaag gcgtgtttct ttctaatggt
    10261 ccaggtgagc caaggatttt aaaacaagag attgcagaga ttaaaaaact tgcagaagct
    10321 aaaattccta tgcttggaat ttgcttaggt caccagcttt taagtaatgc ttttggatat
    10381 gaaacttata aaatgaaatt tggacaacat ggagcaaatc atcctgtgat caatcttgat
    10441 acaaaaacgg tagaaattac cgcacaaaat cataattata atgttccaga agaattagct
    10501 caagtggctc atatcactca tagaaattta tttggcgata atgttgaagg agtaagatat
    10561 aaagactatc ctattatttc agtacaacat catccagaaa gttcttcagg tcctcatgaa
    10621 agtaagtata tttttaaaga atttatgaat ttgatgtgag tatagatttt ttagctatta
    10681 tcagcgttgc ttttttatct agttttggac actgctattc tatgtgtggt ggttttaatt
    10741 tactttttat aaatttgaat tcaaaaagca ataatttatt tttattaact tttatttata
    10801 atttgtttag aatttttgct tatattgttt tagggataat ttttgggact tttgggaata
    10861 tcttggcaat caatgctaag gttcaaagtt tgtcattttt tattcttggt atatttatga
    10921 tgattttggg ttttgctctt atttttagag gcaatatgtt atcttttatt gaaaataatg
    10981 ttttttttga tagttttgta aagaaaatta ttaaaaaatc taaaaatttt aaaggattaa
    11041 aatcagccat atttttagga ttttcaaatg gttttgttcc ttgtggattg gtgtattttt
    11101 ttatagccaa tgcaatgagt aagcaaaata tttttgaagg tatgttggta atgatgattt
    11161 ttggaatatc aactttacct gcgatgttat ttttttctaa aatttcacag ttttttagtg
    11221 attttttgaa aaatttattt aattatttat cgtatggcgt tattgtttgt tacggtataa
    11281 atcttgccta tataggtttt aaggcttttc aatgaaagat ttttttaaag atcagttttt
    11341 taaagctctt gaaaaaaata caattttttc aagagctgat gttcaaggaa atttaatttt
    11401 tgtcagtgat aagctttgtc aaataagtgg atatagtaaa aaagagctta taggaaaaaa
    11461 acattcaata tttaaacatc cagatgttga ggaatgttat attgaagaac ttttaaaaaa
    11521 actttcatat aaaaaacctt atcaagttat ttttaaaaat attgataaat taggcaaaac
    11581 tttctatctt gaaactttat taatccccat attggataaa aataatgaat taatagaaat
    11641 agtagcattc tctcatgatg ttagtaattc ttttaagctt aatgaagagc ttgctctaaa
    11701 tcacgctaaa ttaagagaat taagtattaa tcttgaaaat acagttaaaa atcaccaaca
    11761 agaatttata cagttaggta aaaaatttga gaaaaaaatg caaattgcct tggaaaaaaa
    11821 tgaaaaagat attaaaatag catatgaaga gattttgaaa tcttcattag aacaaatgat
    11881 tagtgatata gcacatcaat ggagacaacc gttaaatgag ctcggtattg ccatgtttca
    11941 aatgaagcaa aatcttaaag atgaaaaagg atttgctgaa atttactcac aatcaaaaga
    12001 tatgattaaa aatatgtcag aaacaattga tgtgtttaga actttgttta acaaaggagt
    12061 agagcagtgt gtatttataa aagagacttt aaataaagcc ttggaaattg cttttgaaac
    12121 tatagaaaaa aatcatgtaa atattaatat tgtttcgaaa agtgattatg aagttttggc
    12181 atatgagaat ggtttaataa gagtttttct taatttgatt ttaaattcaa tagaagcatt
    12241 taaaaacaaa aaaaggaaaa tcataacaat aaatttttca aaatttggaa aaaattatct
    12301 gaaaattaca ataaaagata atgctggtgg gattgataaa gaaaatttag ataaaatttt
    12361 tcaaccttat tttacaacaa aacatcctag tcaaggtata ggagtaggac tttatataag
    12421 tagacaaatt atcgaaagtt tccaaggaaa aataaaagtt aaaaatggaa aagacggggc
    12481 ttgttttgag atatttttaa aactaaaaga gagggtagag tagaaatgtc acaagaatgt
    12541 aaagaattga taatattagt agttgaagat gaggttaagg ctagagaatc aatgattaat
    12601 atattaagcg aacgctttag taaagtaatc ggagctcaaa atggagatga ggggcttaaa
    12661 aaatttaaaa aatttaagcc agatttagtt atcacagata ttgctatgcc tattatggat
    12721 ggactggata tggcaagaga gattaaagaa atttcagatg atgtcccaat tgttgttctt
    12781 agtgcgtatt cagagaaaga gagacttttg cgttctattg atattggtat agataaatat
    12841 ttgattaaac ctgttgatat agaagagttg tttaaagttt tagattatct gataggtgaa
    12901 aaaattgaag caaatatgct tgtaaaaatt tctgaagaat atcaatttaa caaaactaaa
    12961 cgaactttaa tttacagtgg tggagaaatt gttttaacta aaaaagaatt ggcttttatt
    13021 tctttgcttt taaagcaacc tggagctttg gttttgcatg aagatattaa gaaaaatgtt
    13081 tggataggtg aacatgtgag cgatactgct gttagaactt ttataaaaag agtaagagat
    13141 aaagtgggtg aagattttat aaaaaatgtg ccaagtttag gttataagat aaatatcaat
    13201 aaataagact gatttagcct taaaatataa aacataacaa atgattaaca aaattatcat
    13261 ttttaagaaa aaatgtataa ttaatattct ataatattct cttgttatca aaaattttaa
    13321 ggagaaagtc gatgcatcca ggtaatgtat taaattacga ctatacggtt gcaagatatt
    13381 ttatgtttgc gaccatattg tttggcattg ttggtatggc tataggaact cttatagctt
    13441 ttcaaatggc atatcctaat ttaaattatt tagcaggaga atatgccact ttttcaagac
    13501 ttagaccact tcatacttca ggtgtgattt ttggttttat gctttcaggg atttgggcaa
    13561 cttggtatta tataggtcag cgtgttctta aagtgagtat ggctgagtca agatttttaa
    13621 tggctgttgg taagcttcat ttttggcttt atatgcttac tatggtttta gctgttatat
    13681 ctttgtttat gggtgtgact acatctaaag aatatgcaga gcttgagtgg cctttagata
    13741 ttcttgttgt tcttgtttgg gttttatggg gtgtaagtat ttttggactt attggaattc
    13801 gccgtgaaaa aaccctttat atttctctat ggtattatat agctacattt ttaggtatag
    13861 ctatgcttta tctttttaac aacatggaag taccaactta ttttgttact ggaatgggta
    13921 aatggtggca tagtgtatca atgtatgcag gaacaaatga tgctttagta caatggtggt
    13981 atggacataa tgctgtggca tttgtattta ctgtgggtat tattgctcaa atttattact
    14041 tcttgccaaa agaaagtggt cagccgattt tctcttataa actctcttta tttgcatttt
    14101 ggggcttaat gtttgtttat ctttgggcag gtggtcacca tttgatttat tcaactgtac
    14161 ctgattggat gcaaactatg ggttcggttt tctctgtagt attgatttta ccttcttggg
    14221 gttcagcgat taatatcttg cttactatga aaggtgagtg gagtcagctt cgcgagagtc
    14281 cgttgattaa atttatgatt ttggcatcaa ctttctatat gttctcaaca cttgaagggc
    14341 caattctttc aattaaatct gttaatgctt tagcacactt tacagattgg attccaggac
    14401 atgttcatga tggaacatta ggttgggtag gatttatgac tatggctgcg ctttatcata
    14461 tgactcctag agttttcaaa agagagcttt atagcaaatc tttaatggaa gctcaatttt
    14521 ggatccaaac cacaggtata gttctttatt ttgcttcaat gtggattgcg ggtattactc
    14581 aaggtatgat gtggagagcg acagatgagt atggtaactt gctttatagc tttattgata
    14641 ctgtggtggc tattgttcct tattattgga ttagagcgat tggtggattg ttgtatctta
    14701 tcggtttctt tatgtttact tataatattt acaaaacaat tgcttgtgga agagtgcttg
    14761 ataaagaacc aaaaagcgct tcgcctatgg cagcataaaa aggagaaaat atgtttagtt
    14821 ggttagaaaa aaatccattc ttttttgctg tagctgtttt tgtagtgatt gcttatgcag
    14881 gcatagttga agttttacca aattttgcag aaaatgcaag accaattgaa ggtaaaaaac
    14941 cttatacggt tttacaactt gcagggcgtg cagtatatat taaagatagt tgtaatgctt
    15001 gtcattcaca gcttattcgt ccatttaaat cagaaacaga tcgttatggt atgtattctg
    15061 taagtggtga atttgcttat gatagacctt ttctttgggg ctcaaaaaga acaggacctg
    15121 atcttgctcg tgtaggaaat tatagaacgg ctgattggca tgaaaatcat atgtgggatc
    15181 ctacttctgt tgttccagat tctattatgc cttcatataa gcatatgttt aaaaataatg
    15241 cagatattga aactgcttat gctgaggctt taactgtgaa aaaagttttc aatgttcctt
    15301 atgatgcaga aaatggaaca aaacttggtt cttgggagga tgcacaagct gaagtaaaag
    15361 ctgaagctca ggctatagtt gatcaaatga aaaatcaaga agtaaaagat gcttttgcta
    15421 aaggtgaaat caaagaaata gttgctttga tcgcttattt aaatagctta aagtaagatg
    15481 atggaacatt tatcaatagt ttttgatgtg attaaaaatt taatcacatt tgatttagca
    15541 acagttcaaa aacatgagtg ggagattttc caaggttatg gtttttttgc actcgtgatg
    15601 tttttgtcaa tagtattata tgcgtatttg tatcatttat atagaacaga aaaaaaaggc
    15661 gagagaaatt atgaaaatta tgcaaacctt gccttaaaag atgatattga tgatagtgta
    15721 ttagaaagta aaaggagtgc ttaatgcaat ggttaaattt agaagataat gttaatctct
    15781 tatctttaat tggagctatt cttatcattt taatcacact agttattgtg ggtagaatgt
    15841 ttaagcaaat gaaagaaaag aaaggcgagt cagagcttag tgaacatagt tgggatggaa
    15901 taggagagta taaaaatgct gttcctactg gttgggctgt ggtatttttc ctgactattg
    15961 tttgggctat ttggtatttt ctatggggat atcctttaaa ttctttttca agtataggtc
    16021 aatataatga agaagtagca actcataata caaaatttga agaaaaattt aaaaatttat
    16081 ctcctgaaga taaaatagca atgggtcaaa atatcttttt agttcagtgt tcggcttgtc
    16141 atggaattac aggagatggt atcaatggta aagctcaaaa tttaaatatt tggggtagtg
    16201 aagaaggtat aatcaatgta attaaacatg gttcaaaagg tatgaatttt ccaggtggag
    16261 aaatgcttgg tgctgctgat ttaggtgtag cagaagaaga tatccctgct attgctgctt
    16321 atgtagcaaa agatctttca gctattaaga aaactgcaaa tgaaaattta gtagcaaaag
    16381 gtaaagaagc ttatgcaact tgtgcagcat gccatggaga agatggaaaa ggtcaagatg
    16441 gaatgttccc agatcttaca aaatacggtt ctgcagcttt tgtagtagat gttttacata
    16501 gtggtaaggc tggttttata ggaacaatgc cgagttttcc aacacttaat gatattcaaa
    16561 aagaagctgt tggcgagtat gtaatttctc tttcaagggg tgaatgatgg aaaataataa
    16621 tagatgcgtg ttttctcttt caggtgttac aggtatgtta attgctacgg ttttgttgct
    16681 tgctatctta gcagttttaa ctatttggag tcttaaagct cagcaagaag tgatgcaaaa
    16741 gccatatagt cttaaagatg tacaaagtgt aaagatgttt ggttcaaaag aacaagatca
    16801 tagaagtata aaggaagcac aatgagtaag gctttggaat atttaattgt tattggttta
    16861 gttgttgctg ctgcaatcac cgcttggtcg gttttgaccg taaatcatct tcatatagga
    16921 tgaaaaaaat attacaagat ggcttttttt tagctatctt cttctttgtt ttattgcctt
    16981 ctagggtttt tgctcttgat gctgtacttt ttaatgaaaa tattttaagt caaaaagtaa
    17041 gtaacgagat taatcttata ggaaaagagc tttaccaaaa aagtaatatt tttatcggcg
    17101 ttatggttgg tgataaaact gaaattgaaa ctttattaaa taaacaaaaa gaacttcctc
    17161 aatcttatat attgcttctt ttgtcaaaaa attctcacaa agttgatata gtgggctcaa
    17221 aaggtgcttt agctttgatt gataaagaag ctgtgcttag tccttatcct ggaacaggat
    17281 ctattttgcc gatattagct acaaataaag gtgatattta taatgctgct atacttaatg
    17341 gttatgcaga tattgtagat cgtgtggcaa aatccttggg attacaatta gaacattcta
    17401 taggtaatgc aaatcgtgat actatcaata ttttaagaat acttatttat ggatttattt
    17461 gctttgcatt gttatactat gcacaaagaa gaataaagag gaaaaaaaat gttagaaact
    17521 aaaaaaagtt tttggcctta tggtattttg ctttcacttt tggctataat tattgcttgt
    17581 attgtaacga tttttatagc aagtcaccat cctgtgtatg aggatgattt ttattttgac
    17641 tcttatcaaa atgttgaaaa taattacaat caaatacaaa aacaacaagt aaattttgat
    17701 aaatttttta aagtaaattt tcaaaatgat aaaatcactt ttataggtaa aagaaaaatt
    17761 cctagttatg aagtggatca aaattcctat gttgcaaatt ttaaaatttc tgcattacaa
    17821 aatataaatt ctaatgattt aaaagttcaa gttcttctta caagaccatt cactaaaaat
    17881 tttgatcaaa agttagaagg acaagttaaa aatggaattt taagtatcgc tttacctaaa
    17941 ttagataaag gtagatggga gcttaagcta aagttttatg caaatcaaga aacagtgggt
    18001 ttttttagct acgaattaaa tgctcaatga aattaagaat ttttagctct tcaaggcaaa
    18061 ttagagaata ttataatcaa aaaaaacagc aaaatgcttt attagatagt gctattcata
    18121 taggtgaatt tttagataaa gtttgtttga gcaattttca taaagcaagt tcttatgaaa
    18181 gtttgctttt aatgcaagaa gcttgtctaa aaagtaagga tttagaaaaa aaactaggaa
    18241 tttcggtaga attttttgct tttttgaaaa ataacgaata tcttttttct ttttttaaag
    18301 aactgagttt ggaaaaaaaa agcatagaag atcttaaaaa caatgattat tatgccacct
    18361 ataatgaaca tttggaaatt ttagatgagg tatataagaa ttatcttgct ttgcttgaaa
    18421 agaattcttt ttatgatgat ctttctttac ctaaaaatta cactcttaat aaagattttt
    18481 tagatgagta tgaagctata gtttatgatt tgcaaggttt tttaagtaaa tttgaagaaa
    18541 atttattaag tgaaatttct cagattaaag aagtggtttt aagttttaaa acgagtaaat
    18601 ttaatcttga atatctttta aaacttgatt ttttaaaaat atttgattta aaaataaaca
    18661 ctcattatga aatcaatctt tcaaaacaag agatcttaaa agaagaaatt tttaaaacaa
    18721 aaaattcaaa aatgaaactc aaatcttttg aattaagggc tttgcaatgt gcttttgtta
    18781 tggatgaaat ttcacatttt gtacgcaaag gtttaaagcc tgaaaatatt gcagttataa
    18841 ctccagatga aagtttttgt gagtttttaa gactttttga taaagacaat atgcttaact
    18901 ttgcaagtgg aattagtatt aaagagagtt tgttttatca aaaatttcaa gcactttatg
    18961 aaagtgctag tagtgcttct tttgtctata aaaatcaaga ggattatttt gaagacacgc
    19021 agatgatttt tgattatcac aatacgcttt tacattcttt aaaacttgat tttatagagt
    19081 ttaaaaagta ttttgatgag aaatgtgatt ttaaatattt tgaaaaatta cttgctttgt
    19141 ttttagaaaa tgaaaagcaa gagcttattt atttgatacg aaaagaactt tattttatta
    19201 aagatttatt gaaaaatcag tctttaactc ttaaagagtt gatccatctt tttttcatgc
    19261 aaatttcaca actttccctt agtgatgtag gtggaggtaa ggttacggta atgggacttt
    19321 tagaaagtcg tgggctttgt tttgatggag tgattttggt tgattttaat gaagaattta
    19381 ttcctaaaag aagtgttaat gagctttttt taaacaatga agtgcgtaaa aaagcaggat
    19441 tgattagcta tgatagaaga gaaaatttac aaagatttta ttatgaaagc ttgatgaaaa
    19501 atgctttaga agtaagtatt tgctttgtgg aaaatgaaga aaaaagcaaa tcacgttttt
    19561 tagatgaact tgattttgac tttttttatg aaactcatat ccaccaaaaa gcttatctta
    19621 atgctttaaa attagactat gaaggcataa aacctaatct aactcctata aaagctccta
    19681 ttttaaagca taatcctttc gagtttccgc tttcttgtag tcgttttaat ttattggaaa
    19741 atcaaaaaag aacttattat tatcgttata ttttaaattt agcagaacct agggttttaa
    19801 gcgaggaaag caaagcgaaa aatcaaggaa attttatcca taaaatgctt gaaatttatt
    19861 ataaaaatta ttcaaataat gattttgata taaaagtttt tgcaaattta ttgaataaag
    19921 aatatcaaaa atacaatatc agtgaacttg atcttgaagt atttaaatta aaatttatac
    19981 aatttgctaa aaatgaaaaa gagcattttt caaaaggctt ttatgtcgca catacagagc
    20041 ttgagttaaa caatatttta aagctcggaa cagatagtat aaaacttaag ggtactatag
    20101 atcgtatcga tagttcaaaa gaaggtaatt tgattattga ttataaaagt ggaaaagtgc
    20161 caagtaattc ttatcaactt gctttttacc aagctttata tgatgaaaat gcaagcgtgg
    20221 gtttttatga tttaaatagt atgcaaatat tgcatcaaaa agccaaaagt ttagatgagc
    20281 taagagaaag acttaaagat ttagttctta tgagtaagga agaaatagag tttgaaaatg
    20341 aacaagatga gtattgtcct tataaactca tttataaaaa ggaattaaaa tgagtcaatt
    20401 tgagcctttt ttggcattag aagcgagtgc aggaagcgga aaaacctttg ccctgagtgt
    20461 gcgttttgta gcacttattt taaaaggagc taggattaat gaaattttag ctttgacttt
    20521 taccaaaaaa gctgctaatg aaatgcaaaa aagaattatt gagacttttt taaacttaga
    20581 aaaagaaaat aaaaccagtg aatgcaatga actttgcaag cttttaggta aagataaaga
    20641 agagcttatt tctttaagag atgctaaaaa agaagaattt ttaagaacag agttaaaaat
    20701 cagtactttt gatgcttttt tcggaaaaat tttgcgtgtt tttgctttaa atttgggctt
    20761 aagtagtgat tttacaatga gtgaagagag gcttgatgta agagagattt ttttaaaact
    20821 tcttaaaaaa gatgaattaa aagatttggc ttattatatt aatttagttg atgagaaaga
    20881 aaattttttt aacgagcttg aaaaatttta tgagaatgct tattttcaaa atcgtcctaa
    20941 aattctaaat ccaactaaag cttatatcaa taaagcttat agtgagttaa gaagttattg
    21001 tttgggtctt actcatgtaa aaaattataa aaatttgtgt gacaatttta aaagtgaagt
    21061 tttagattta tccgtgttta tgcaatcaag ttttatgaca aaatttgaaa gtacaaaata
    21121 tttacaagat ttagaaagta ctaacttgca ttttagtgca aaaagaatgg agcttataaa
    21181 tgctttaaat acctatgcca tagagcttga aaattataaa attgctaatt taatgaatct
    21241 tttaaatcat tatagtgaag ctaaaaatat atttcataaa gataaaaata ccttaaattt
    21301 ccaagatgtg agtaaaaaag tttatgagtt aataaccagt gaatttaagg atatgattta
    21361 ttttcgttta gatggtttta tttcgcattt gcttattgat gaatttcaag atacaagcgt
    21421 gatccaatat caaattttac gccctttgat cgctgagctt gtttcaggag aaggggttaa
    21481 gaaaaatcgc actttttttt atgtaggaga taaaaaacaa agtatttatc gctttcgtaa
    21541 aggaaaaaaa gaattatttg atttgttaaa acaagaattt agtcaaatta aaagtgataa
    21601 tttaaatact aattatcgtt ctaaagagct tttggttgat tttgttaatg aaacttttaa
    21661 agaaaaaatc aaagattata aagaacaatt tgccttagaa agtaaaaaag gcggttttgt
    21721 gcgtattgtg gagtctaagg aacaaaaggt taaaaaccaa gcccaagaaa ttaaggaaaa
    21781 gactttagaa actttatttg agcaaattaa ttttttaaga tctaaaaata tttcttatga
    21841 tgatatttgt attttgtgtt ggaaaaatag cgatgcggat atggttttgg attttttaag
    21901 agagcaaaat attcctgctt ttactcaaag taatgttttg cttgaaaata aagcaagtgt
    21961 aagacttgtt ttagaatatg ctaaatattg tatttttggt gatgagtttt acttggtatt
    22021 tttaaaggaa cttttaggtt ttgagccgag aaaaattacc cttgattttt caaaaaatgc
    22081 tatggaaaat gtactttttt taataaaaga attaaaactt gatttaaatg atatcgcttt
    22141 aatacaattt atcgaatatg ctaaaactaa ggagaatttt ttaaagcttt tatttgagcc
    22201 ttgtgctttg aaaatagtaa gcgaacaaaa tatgggaatt agtattatga gtgtgcataa
    22261 atctaagggt ttggaatttg atcatgtgat tttacttgat agtttatcta aaaacaattc
    22321 aaacaatgaa gatatcatgc ttgaatatga tatcaatcaa ggttggcaac tccatattaa
    22381 agataaaatt cgagagctta ctaaagagcc tatttatact ctttttaaag aaaatattac
    22441 aagagcaaat tatgaagatg atattaataa actttatgtg gcttttacaa gagctaagga
    22501 aagtttgatc atcataaaaa gaaatgaaga aagtgtaaat ggaaattatc caagttattt
    22561 taagggggga tttttaaata tacattctca agagagaggt tttttagaaa gcaaagaaca
    22621 aattttaagc gttaaaaaag aaagcattca aactttgcaa aaatttgaaa aaattacctt
    22681 gcaagaaatt caaagcgaag aaaggcttga tagtaaagaa ctatattttg gaaatgcttt
    22741 tcactttttt atgcaaaatt taaaacttcc taagggtgaa aattttcaaa tacttactca
    22801 aagatgcaag agtaaattta gacatttttt agatgagagt gattttgaaa agctttttaa
    22861 aagaattgaa attttactta aaaatattca atttcaaaat ttgattggtg atggaaagct
    22921 tttaaaagaa caagctttga gttttaatgg agaaattaaa caattagact tgcttgcttt
    22981 aaaagatgaa gaagctttta taattgatta taaaacaggt cttgctatgc aagataaaca
    23041 taaagagcag gtaggaactt ataagatcgc cattagtgaa attttgcaaa aagataaagt
    23101 gcgtgctttt atagtttatt gtttggaaaa tgaaattcaa attttggaaa tataaacttt
    23161 atttttactt aaattaagta aaaattaata ttatttttta tacaatcaca ttttaaattt
    23221 ttggcaaagg taaaaattat gacaaagata acaaagccaa acgaagtaaa acgagaatgg
    23281 attgttttag acgcagaagg caaacgcttt ggtcgtcttt taactgaagt agcaacaatt
    23341 ttgagaggta aaaacaagcc ttgctttact ccaaatgttg attgtggtga ttatgtaatt
    23401 atcatcaatg cttcaaaagc tgtatttaca ggtgctaata aagcagaaga taagctttat
    23461 catagacatt caggatattt tggaagtgta aaaagtgaaa aatttggtga tttacttgaa
    23521 aaaaatcctg caaaattgta taaattagca gttagaggta tgcttcctaa aacaaatttg
    23581 ggcagagcta tgcttaaaaa attaaaaatc tatgcgggta gtgagcaccc acacactgca
    23641 caaattgcta aagaaggaaa ataatcatgg caacaacata cgcaacaggt aagagaaaaa
    23701 ctgctatcgc aaaggtatgg gtaaaaccag gtagtggtaa aattagtgtt aatggttttg
    23761 atttaaacac ttggcttggt ggacacgagg cgattaagct taaagtggtt caacctttac
    23821 ttgtgactaa acaagaaact tcaatggata ttaaggcaac tactttaggc gggggctata
    23881 gtgctcaagc tgaagcttta agacatggaa tttcaagagc tttagcagct atggatgctg
    23941 attttagagc cttattaaaa cctaaaggac ttcttactag agatagtaga actgttgagc
    24001 gtaaaaaata tggacgccgc aaagcaagaa gaagcccaca attctctaaa cgttaatatt
    24061 tttggtggga ttttcccacc tttctacaat tttttataaa actcatcctt ttttctatca
    24121 tttatgttat aattgcaaaa tttaaatttt tattttataa cacaatgaaa ggttttttct
    24181 atgaaaaaaa tattcttatg tttaggtttg gcaagtgttt tatttggtgc tgataacaat
    24241 gtaaaatttg aaatcactcc aactttaaac tataattact ttgaaggtaa tttagatatg
    24301 gataatcgtt atgcaccagg gattagactt ggttatcatt ttgacgattt ttggcttgat
    24361 caattagaat ttgggttaga gcattattct gatgttaaat atacaaatac aaataaaact
    24421 acagatatta caagaactta tttgagtgct attaaaggta ttgatgtagg tgagaaattt
    24481 tatttctatg gtttagcagg tggaggatat gaggattttt caaatgctgc ttatgataat
    24541 aaaagcggtg gatttggaca ttatggcgcg ggtgtaaaat tccgtcttag tgattctttg
    24601 gctttaagac ttgaaactag agatcaaatt aatttcaatc atgcaaacca taattgggtt
    24661 tcaactttag gtattagttt tggttttggt ggcaaaaagg aaaaagctgt agaagaagtt
    24721 gctgatactc gtgcaactcc acaagcaaaa tgtcctgttg aaccaagaga aggtgctttg
    24781 ttagatgaaa atggttgcga aaaaactatt tctttggaag gtcattttgg ttttgataaa
    24841 actactataa atccaacttt tcaagaaaaa atcaaagaaa ttgcaaaagt tttagatgaa
    24901 aatgaaagat atgatactat tcttgaagga catacagata atatcggttc aagagcttat
    24961 aatcaaaagc tttctgaaag acgtgctaaa agtgttgcta atgaacttga aaaatatggt
    25021 gtagaaaaaa gtcgcatcaa aacagtaggt tatggtcaag ataatcctcg ctcaagcaat
    25081 gacactaaag aaggtagagc ggataataga agagtggatg ctaaatttat tttaagataa
    25141 tgaataaaac tattttattt gatttagatg gcactttaat tgattctact gatgctattt
    25201 taaattcttt ccaaggagct tttaaagccc ttggattaac ttctaaaaat aatgaagaaa
    25261 tcaaaaatct cataggttat cctttagagc aaatgtttag aatgctttat ccagataaag
    25321 taaatttaag taaagaattt gtattagctt atcgtgaaat ttatgcacaa atttatttag
    25381 aacaaaccac tcttttgcct aaagcaaaag aagcattaga acttggaagc gaaattgcag
    25441 atcttggtat agttacaaca aaaggaggta aatttactcc gattttactt gattatttgg
    25501 gagttaaaaa attctttaaa actttaatta ctcttgaaga tgtcacaaat ccaaagccaa
    25561 gttccgaacc tataatttta gccttaaaaa gactcaataa aactcaagaa aatgcctata
    25621 tgataggcga tacaatatta gatattcaag ctgcaatttc tgctaatatc actcctttgg
    25681 ccttaacttg tggctatggc aatgaaaatg aattaaaagc tcattctata gtatttttaa
    25741 atgcatatga ggctgttaat tatatagcta gattaaacta atttcaagtt ttcgttaaac
    25801 gccttttaag agaatttata gtaaattgat agctaaaaaa ttataaaaat tatcaatata
    25861 aaggaaggtc tcaatgggta aaattatgaa aactatggac ggaaatgagg ctgctgcata
    25921 cgctgcgtat gcttttactg aagttgctgg aatttatcct attacaccta gttctcctat
    25981 ggctgattat accgatatgt gggcagctgc aggaaaaaaa aatctttttg gagttcctgt
    26041 aaaaatcgta gaaatgcaaa gtgaagcagg agctgcaggt agtgtgcatg gatctttaca
    26101 agctggggct ttgactacaa cttatacggc ttctcaagga ttactcctta aaattccaaa
    26161 tatgtataaa atagcaggtc aattactccc ctgtgtaatc catgtagcag cgcgttcttt
    26221 ggctgctcaa gctttgtcta tctttggtga tcatcaagat atttatgcag caagacaaat
    26281 tggttttgct atgctttgtt cgcattctgt gcaagaaacc atggacttag ctggtgtagc
    26341 acatttagct gcaattaagg gaagagtgcc atttttacat ttttttgatg gttttagaac
    26401 aagccatgaa attcaaaaag ttgaagtaat ggattatgcg cattttgata gattattaga
    26461 tagagaagct ttgcttgaat ttagaaataa tgctttaaat ccagaaaatc caaaaacacg
    26521 tggaacagca caaaatgatg atatttattt tcaaactaga gaagtaagca atcgttttta
    26581 cgatgcttta cctgatgttg ttaatgaata tatgcaagaa atttcaaaaa ttacaggtag
    26641 agaatacaaa ccatttactt attatggtca caaagagcca gagtgtgtga ttgttgctat
    26701 gggttctgta actcaagcac ttgaagaagt ggtggactat cttaatgcca agggtgaaaa
    26761 ggtagggatt ttaaaagttt atctttatcg cccatttagt ttaaaatatt tctttgatgt
    26821 tatgccaaaa tcagtgaaaa aaattgcggt tttagataga accaaagaac caggaagtct
    26881 tggagaacca ctttatcttg atgtaaaatc agctttctat ggaagagaaa atgctcctgt
    26941 tatagtgggt ggaagatacg gactttcttc aaaggatgtt gatcctgctc aaatgatagc
    27001 agtatttgaa aatcttaaac ttgataatcc aaaagatggc tttactgtag gtataattga
    27061 tgatgtaact catacttcac tgagtactgg agagaaaatt tcacttggag atgaaagtac
    27121 gatcgaatgt ttattttacg gacttggtgc tgatggaact gtgggcgcaa ataaaaactc
    27181 gattaaaatc atcggagata aaacggattt ttacgctcaa gcttattttg cttatgattc
    27241 taaaaaatca gggggttata caagaagcca tttaagattt tctaaaaaac ctatccgttc
    27301 aacttatctt gtttcaactc cgcattttat cgcttgttcg gtagcggctt atttggaaat
    27361 ttatgatgtt ttagcaggaa ttcgcaaagg aggaactttc cttttaaata gtatttggaa
    27421 tgctgaagaa accataagac aacttccaga tgcagtaaag aaaactttag ctgaaaaaga
    27481 agtaaatttt tatatcatca atgcaaccaa actagctcgt gatataggtt tgggaaatcg
    27541 tacaaatacc attatgcaat cagccttttt caaacttgca aaaatcattc cttatgaaga
    27601 cgcacaaaaa tacatgaaag agcttgcgta taaatcttat agtaaaaaag gcgatgctat
    27661 tgtagaaatg aattacaagg ctattgatgt gggtgctgat ggacttgtaa aagttgaagt
    27721 ggatccaaat tggaaaaatt tagagcttaa agaaaaagaa caaaccaatg cctataaagg
    27781 tactgaattt gttgaaaaaa tcgtaaaacc tatgaatgcg gctaagggtg atgatttacc
    27841 tgtttcagcc tttttaggtt atgaagatgg aagttttgaa cacggcacaa ccgaatacga
    27901 aaaacgcggt gttggggtta tggtaccaag atggatagag gcaaattgta ttcaatgcaa
    27961 tcaatgtgct tcagtttgtc cgcatgctgt tatcaggcca tttttgatta atgatgaaga
    28021 aatggcaaat gcacctcgcg gtgtaaaaga tcatgcttta gaagctaaag gaaccaaagg
    28081 agaaaaatta agctttaaaa ttcaagtttc tccacttgat tgtacaggct gtgagctttg
    28141 tgttcatgag tgtcctacta aagaaaaatc tttggttatg gtaccacttc aagaagagat
    28201 ggattttggt gagcaagaaa atgcggatta tttatttaaa gaaattactt ataaagatga
    28261 tattttaaat aaagaaacca caaaaggagc gcaatttgcc caacctttat ttgaattcca
    28321 tggggcatgt cctggatgtg gggaaactcc ttatattact ttaattacaa gattgttcgg
    28381 tgaaagaatg attgtggcta atgctacagg ttgtagttct atttatgggg gttcagctcc
    28441 atcaactcct tatagaaaaa gtgtgaaaaa tggacacggt cctgcttggg gaaattcact
    28501 ttttgaagac aatgctgagt ttggtttggg tatgaaaatt gcaactgaaa atacaagaca
    28561 ccgcattgaa catatcatga atgaaagtat gcaagaagtt ccaaatgctt tatcagctct
    28621 ttttaaagat tggattgcaa ataaagacaa tggtgctatg tctgtggaaa ttaaagataa
    28681 aatgatccct attttagagc aaaataaaaa tattaaagcc gtacaagata tattagagct
    28741 taaacagtat ttaagtaaaa aatctcactg gatttttggt ggtgatggtt gggcttatga
    28801 tataggctat ggcggacttg atcatgtttt agcaagtgga gaaaatgtaa atattttagt
    28861 gcttgataca gaagtttatt ctaatacagg cggtcaaagt tcaaaatctt ctagaacagg
    28921 agctgtagca cagtttgcag cagcaggcaa acctatacag aaaaaagatc taggtcaaat
    28981 tgctatgact tatggttata tttttgtagc acaagtaaat tcaacggcaa attatactca
    29041 tcttatcaaa gctatcactg cagctgaggc ctatgatgga ccatctttgg tgatttgtta
    29101 ttctccttgt atagctcatg gtattaaagg tgggctgggt tactcaggag agcaaggtga
    29161 gcttgctaca aaatgtggtt attggccact ttataccttt gatcctcgtt tagaagagca
    29221 aggaaaaaat cctttaactc taacaggaaa agaacctgat tgggatttat atgagcaatt
    29281 tttgatgaat gaagtgcgtt ataattcact taaaaaagca aatcctgaac acgctgctga
    29341 gctttttgaa cgcaataaaa aagacgctca acgtcgctat agacagctta agcgtatcgc
    29401 tatggctgat tatagcaatg aggtcgaaag ctgataaaat atatttttag tgctacattg
    29461 tgttttagca ctttgtttgc acaagataat tttgaagagt attttaaact tatagataaa
    29521 gaaaatcgta taaattttaa tactcttcaa aacccatttg tgaatcctac ttttgaaaaa
    29581 ttaagacata ttaaaattac tgcaattatg cttgataaag taaaaattta tgatcgatgg
    29641 tataaaaaag gtgatatgat tgatgatgct ataatatatg aaataaatac taaagagatt
    29701 aaattccaat atgataattt agaaattgca atccaaataa ataaaaatga taagattaat
    29761 attaattaac attctttttt gccattatct ttatgcttta gattgtcaaa agcgtctttt
    29821 tgatatcagt attaatgaaa aattaagcat acaagaaagt cttgatgagc ttgcaaaata
    29881 ttgttctttt agtattattg ttaaagataa aattgccaaa gaaaaattag aaatattgca
    29941 aaactctgtc aatattcatc aaatgagttt agacgaaatt tttaattttt ttatcaaaga
    30001 gcatgatctt agctatgatt ttgatggtaa aattttaaga atttcaggca ttaatacgaa
    30061 gatttttaag ataagttata tcacttctat cagagaagga caaagcataa ctaaagcgtc
    30121 tgtagacgct aaaccaaggc aaagtgaata tagcggtagt tttgatgacg cagaagacaa
    30181 tatgattaaa agtatggaaa aatttgattt ttggcaaaat atagaaaaag agattattgt
    30241 attattaaaa aattctcatg aagattatga ggctaaaatt cccattataa atcccaatgc
    30301 aggtcttatt atagtaactg gaacaaattc tcagttaaaa agtgtgaaaa attatttgca
    30361 aaaactagaa aatcgtctta aaaaacaagt tattatcgat gttagcatac ttgctgtgag
    30421 tttaaatgaa aaccattcta gtgggattaa ttggcaaaat tttaatatag gtttaaattc
    30481 gcaagtaaat aatgaaaatt cttttattca gtttcaaaat gggcaaggtt ttgttaagaa
    30541 tttgggttta agggcgaatt taaattttga ttctattatt aactttcttt ctcaaaatgg
    30601 aaaaactagc gtgctttcta atccaaagct tatggcttta aataaccaac aagccattat
    30661 ttctgtaggt gatactataa attatcaagt taaagaaagt tctaaaggca ctgaaaatgg
    30721 gactactgtt agtgaaagtt ataacaatta ttctattttt gtaggcattt tactcaatat
    30781 cttgcctgaa atttctgatg atggaaaaat aatgctcagg attaatccaa gcttaagtga
    30841 ttttaagtat ccagaagata ataaacgaca aaaagaacca agaactattg ctcctgatac
    30901 catacaaaaa aagctttcta gtgttgtgca agtagagaat aatcaaactt taattttagg
    30961 tggattgatt tctcacgata aatctaatga gaaaaattct atcaattttc tatcaaaaat
    31021 tccaatccta ggttctttgt ttaaaggaga agttttaaat tctaaagcaa ccgaaattgt
    31081 ttttattatc actccaagta tagtagatag tgtaaatgct ccaagtctta aagatctagg
    31141 atttaagcat tatgagtaaa attattccat ttagagaaga aatttttcat caaatcaatc
    31201 aaattttaga aagccaaaaa gcttttattt ttttatgggg aaaaagtggt agtggtaaaa
    31261 gtgtattgtt gcaaagattg gcaaaaaaat ataatgttga ttttattaat gaaaatttta
    31321 aagatcagag tttcttaaaa gaaaaaattg agtttttgat ttcacaaggt cagagtttaa
    31381 tcattcttga tgaagtggga atgtatgatt atgcaatgct agaaagcatc aggatttata
    31441 gtgattctat aagttttgtt ttaagttctc ataaaaagtt aaatatactt aaaaaagagc
    31501 attttaaaag tcgtttaagt gcttgtttta aattgaaaaa tattagtctt ttagaacttg
    31561 atgattatat taaattgaaa ttcggaatga atttttcaaa taaatgtctt aagtttttac
    31621 aaaaaatttc tcaaggaaat ttaagatata ttgat
//
LOCUS       DAPIWV010000004        29198 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.004, whole genome shotgun sequence.
ACCESSION   DAPIWV010000004 DAPIWV010000000
VERSION     DAPIWV010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.004"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..159
                     /locus_tag="RJ272_000106"
     CDS             <1..159
                     /locus_tag="RJ272_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7381243.1"
                     /translation="LNLLKSKAKSLNLAPNYYIIISKNGFSKEIDKICEQNLLLLDLN
                     DFKILLEE"
     gene            163..1182
                     /gene="flgS"
                     /locus_tag="RJ272_000107"
     CDS             163..1182
                     /gene="flgS"
                     /locus_tag="RJ272_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HDV7381244.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            1282..2595
                     /locus_tag="RJ272_000108"
     CDS             1282..2595
                     /locus_tag="RJ272_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381245.1"
                     /translation="MSIFSINDNSNYNSILSQAKANKESKENSKISFANTFLKQNASK
                     LNEIQSANSQTLVRSEVLNSTNISNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQADISNTSTNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIKKAAENEPYI
                     ADMKQYFGVSEYYTNIDMAETIKQYYNQFNQIVNHTFNDTNKTSFTETDINSMPKGIS
                     ELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGHINIGLQPLNFTPQSMQT
                     QNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTGVSPREGSATLNPIAKSY
                     AEAMAKESFDGSLTSLDDIMTGKVDFASLLKGYAQDGWLDADIYAMEKGVAWQNTSIG
                     YGGAWFDREFNQAKANGWKASNESINSFVNNIMDRLNNLIGQTRV"
     gene            complement(2653..4080)
                     /locus_tag="RJ272_000109"
     CDS             complement(2653..4080)
                     /locus_tag="RJ272_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDV7381246.1"
                     /translation="MLVNTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALFSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLINLYDDKLSLIHSSLEGLEFKIDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(4081..4800)
                     /locus_tag="RJ272_000110"
     CDS             complement(4081..4800)
                     /locus_tag="RJ272_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7381247.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKRVVDEDFSEIFAKQKAKSLVFWGESDESTPLYCGEKMHQFLKNSTFYPL
                     EGNHFFFLKHSAFIAQKIKEI"
     gene            complement(4802..5017)
                     /locus_tag="RJ272_000111"
     CDS             complement(4802..5017)
                     /locus_tag="RJ272_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDV7381248.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(5077..6117)
                     /locus_tag="RJ272_000112"
     CDS             complement(5077..6117)
                     /locus_tag="RJ272_000112"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDV7381249.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLN
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            complement(6127..6678)
                     /gene="ruvA"
                     /locus_tag="RJ272_000113"
     CDS             complement(6127..6678)
                     /gene="ruvA"
                     /locus_tag="RJ272_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDV7381250.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATSTSELIKEALKKLG"
     gene            complement(6654..8513)
                     /locus_tag="RJ272_000114"
     CDS             complement(6654..8513)
                     /locus_tag="RJ272_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7381251.1"
                     /translation="MALDEKIIAYTENPARELLSVTSRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIIAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            8617..10068
                     /gene="murJ"
                     /locus_tag="RJ272_000115"
     CDS             8617..10068
                     /gene="murJ"
                     /locus_tag="RJ272_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDV7381252.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            10068..11456
                     /locus_tag="RJ272_000116"
     CDS             10068..11456
                     /locus_tag="RJ272_000116"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDV7381253.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLSEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNISKALALLDDFISNANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            11449..13191
                     /locus_tag="RJ272_000117"
     CDS             11449..13191
                     /locus_tag="RJ272_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381254.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            13223..14281
                     /locus_tag="RJ272_000118"
     CDS             13223..14281
                     /locus_tag="RJ272_000118"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDV7381255.1"
                     /translation="MAYEMIKPLLFKLNPEYTHALVECSLRALSASFPGALSFLAHKY
                     IVDNESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DIKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYDRIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            14278..15528
                     /locus_tag="RJ272_000119"
     CDS             14278..15528
                     /locus_tag="RJ272_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7381256.1"
                     /translation="MIAYEKIQLKNKLEIYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKQHFEKIKNTKTM
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            15521..16417
                     /locus_tag="RJ272_000120"
     CDS             15521..16417
                     /locus_tag="RJ272_000120"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDV7381257.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYIAGLIESLEFRLPLC
                     PLSKENFAKIEEVMKKYKIKGF"
     gene            16417..17196
                     /locus_tag="RJ272_000121"
     CDS             16417..17196
                     /locus_tag="RJ272_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HDV7381258.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFINYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(17237..17542)
                     /locus_tag="RJ272_000122"
     CDS             complement(17237..17542)
                     /locus_tag="RJ272_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381259.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(17554..18150)
                     /locus_tag="RJ272_000123"
     CDS             complement(17554..18150)
                     /locus_tag="RJ272_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7381260.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            18224..18964
                     /locus_tag="RJ272_000124"
     CDS             18224..18964
                     /locus_tag="RJ272_000124"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HDV7381261.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKVNLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALENNDEKLLKT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            18968..19894
                     /locus_tag="RJ272_000125"
     CDS             18968..19894
                     /locus_tag="RJ272_000125"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDV7381262.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFVLFPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLEGKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAI
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            19891..21303
                     /locus_tag="RJ272_000126"
     CDS             19891..21303
                     /locus_tag="RJ272_000126"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDV7381263.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIRALNYELCVAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEVKNIKKEILDWMQK"
     gene            21300..22019
                     /gene="kdsB"
                     /locus_tag="RJ272_000127"
     CDS             21300..22019
                     /gene="kdsB"
                     /locus_tag="RJ272_000127"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDV7381264.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYEKALKIYLEK"
     gene            22105..23419
                     /locus_tag="RJ272_000128"
                     /pseudo
     CDS             22105..23419
                     /locus_tag="RJ272_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517240.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            23514..24284
                     /locus_tag="RJ272_000129"
     CDS             23514..24284
                     /locus_tag="RJ272_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDV7381265.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGFFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(24300..25034)
                     /gene="fliP"
                     /locus_tag="RJ272_000130"
     CDS             complement(24300..25034)
                     /gene="fliP"
                     /locus_tag="RJ272_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HDV7381266.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            25177..26466
                     /gene="glmU"
                     /locus_tag="RJ272_000131"
     CDS             25177..26466
                     /gene="glmU"
                     /locus_tag="RJ272_000131"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDV7381267.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAEHKMIKDYYYKKFQK"
     gene            26463..27617
                     /gene="coaBC"
                     /locus_tag="RJ272_000132"
     CDS             26463..27617
                     /gene="coaBC"
                     /locus_tag="RJ272_000132"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDV7381268.1"
                     /translation="MKTVLLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            27614..28231
                     /locus_tag="RJ272_000133"
     CDS             27614..28231
                     /locus_tag="RJ272_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381269.1"
                     /translation="MSMINSTLPIQMKVLAKSGYRHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            28235..28903
                     /gene="uppS"
                     /locus_tag="RJ272_000134"
     CDS             28235..28903
                     /gene="uppS"
                     /locus_tag="RJ272_000134"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDV7381270.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVHLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            28900..>29198
                     /locus_tag="RJ272_000135"
     CDS             28900..>29198
                     /locus_tag="RJ272_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7381271.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGIILLILVYSLSQNFYDFLFLS"
BASE COUNT        10329 a         3709 c         4996 g        10164 t
ORIGIN      
        1 ttaaatcttt taaaatcaaa agcaaagtct ttaaatttgg ctccaaatta ttacattata
       61 atctcaaaaa atggttttag caaggaaatt gataaaatat gcgaacagaa tttgctttta
      121 cttgatttga atgattttaa gattttatta gaggaatgat aaatgaatga aagtatttta
      181 aaaagtttag actcaaatga aaaagaaacc ctacaaaaag gcttagaaag tcttatagaa
      241 caaacttatg taatagaaaa tgaatacaaa actttaaatg aaaactataa ctccttacgc
      301 gcaatggttg atgagattat agaggtgttg cctagtgcgc tttggatttt agataaagaa
      361 aaaaatatta ttttacaaaa tcaagaagcc ttgaaaaatc caaaattact tagtatcatt
      421 agtcttgata aaattcgtga tgagcttgaa tttgaaggta ggttttatgc ggtaaaaatc
      481 atagcacata atgaaaaaac tatagtttca gctacagata ttagcgatga aaaacgcaat
      541 gaaaggcttg caagcatggg tagtgtagcg gctcatttgg cacatgagat aagaaatcct
      601 attggatcta tatctttgct tgcttcaact ctttttgctc gtagtgagct taaaaataag
      661 catatagttc ttgaaatcca aaaggctatt gctagagtag agcgtatcgt aaattcaact
      721 ttacttttta ctaagggtgt gcacatcaat gctttaaatt ttaatctttt agagttaaaa
      781 gaagagtgtg aaagtgccat taactcttat aatttcactt ctcaaataga ctttgaaata
      841 tcttttttgg ataagcagat ttgtgctgat aaagctcttc ttggtttggt tttgcaaaat
      901 ttgatttata atgctattga tgcgatagaa gaaagcgaat gtgaaaagcc tatgattaaa
      961 attttagcaa gttgtgataa tgaaaaaata tgcatcagag tgtatgataa tggttgtgaa
     1021 ataaaagatg agaaattggt ttttgaagct tttaaaacaa caaaacttaa aggcaatggg
     1081 cttggcttgt ctctttctaa agaaatcata aacgcccata agggagagtt aagttttcaa
     1141 agcgatccta agaattttta ttttacctta cctttggtgt gataaatatt ttcttttcac
     1201 cccaaaacga aacagatttt gcttatatta ttttaatata tttagattga aggcagaaaa
     1261 atctaaatca aaggaattaa tatgagtatc tttagcatca atgataactc aaattataat
     1321 tctatacttt cacaagcaaa agccaataaa gaaagtaaag aaaattctaa aataagtttt
     1381 gctaatactt ttttaaaaca aaatgctagt aaattaaatg aaattcaaag tgcaaattca
     1441 caaaccctgg taagaagtga agtattaaat tctactaata tatcaaatac tagcaataat
     1501 actaatttta gtataagtag taaaacaagt tctcccaact atgatatatc aagtgaattt
     1561 aaaaactcta tttatactct aaaatataaa caagcagata taagtaatac ttctactaat
     1621 acagcttatg gttatagtgt agataaagat ggctatatgg gaagtgattt taacaaagcc
     1681 gcaggattgc ctgaagattt taagatacat aaatctactt tggatgagat taaaaaagct
     1741 gctgaaaatg aaccttatat tgcagatatg aaacaatatt ttggtgtaag cgagtattat
     1801 actaatatcg atatggctga aaccataaaa caatattata atcaatttaa tcaaattgtt
     1861 aatcatactt ttaatgatac caataaaaca agtttcactg aaacagatat aaattctatg
     1921 cctaagggaa ttagtgaatt atcatctgat aaaactatag gtattatgcc gaaaaattat
     1981 gataagctaa caataacaaa ctattataat acacaagagc aatataatga agcagaacaa
     2041 ttaggaatgt ttgggcatat taatataggc ttacaaccat taaatttcac tccgcaaagt
     2101 atgcaaactc aaaatttaga taaagacact gcaatagata cttttaatcc tgatatgtca
     2161 gtttatccac aaaatgaaga tggaagttac tctaaagagg ctttgtttat gagtttttta
     2221 aaatcaacgg gtgtatcgcc aagagaaggt agtgcaacat taaatcctat agctaagtct
     2281 tatgctgaag ctatggccaa agaaagcttt gatggatcat taacttcctt agatgacatc
     2341 atgacaggca aagttgattt tgcaagttta ttaaaaggtt atgcacaaga tggctggctt
     2401 gatgcagata tatatgcaat ggaaaaaggg gttgcttggc aaaatacaag tataggttat
     2461 ggtggagctt ggtttgatag agaatttaat caagcaaaag ctaatggctg gaaagcaagt
     2521 aatgaaagta taaattcttt tgtaaataat ataatggata gacttaataa tcttataggg
     2581 cagactaggg tttaaagaag tatttgcacg aagtcaaatt aaaaatgatg acatttgcaa
     2641 atacttagca aatcacataa agctaggtgc atcgtttgaa aagagtatta aatctccgtg
     2701 ttttgtttct ttagctagag tttgaactag ctgactcttt tctttaagta taatggtttt
     2761 tatttttaac tcttttttga aaatttcagc attgatttgt gcactaatga tagcaagatc
     2821 aaaacactca ttgatgattt tagcaagttt tatattttct tcttcgctta cttccactat
     2881 accaggactt actaaaactt tgcgtccttt atagctttta caaagtttat agcttgtgct
     2941 cataccttta aaatttccat taaaaccatc atctatgata aatttaggct ctcttgaaag
     3001 cacttgcaag cgatgttcta cggagtttat atttaaaact tgcttttgaa ttttttctag
     3061 ttttatgcca agataatgag cacaaagtat acaaacacaa agattttgcg cattaaaatc
     3121 ccctaaaatt tgacttttaa aatcatagga tttattttct atatcgattt taaattctaa
     3181 accttcaaga cttgaatgaa taagacttaa tttatcatca taaaggttga tgagcttatc
     3241 ttcttctttt tgggtgctag agtgtaaaaa agccttttct agtcttttgg aatttaaggc
     3301 ttcaagtttg gttgagcgga tattttcaac acttttaaaa tactctaaat gtgcattgcc
     3361 tatctctcct actatgctga tgtgaggttg taaaaaacgc gtgatttcat caatatcgcc
     3421 tttaagtcta gcacctgctt cagctatgta aatttgagta tcttggctta aattggtgtt
     3481 gatatcagca actatgccta gcaaggtatt gacagagcgt ggtgttttgt agcttttaaa
     3541 gtcatctttt aaaagttcgt ataaaaaatt tttaatactt gtttttccaa aacttgcggt
     3601 aatgagtatg atttttaaat tttcattggc tcttagtttg gctttggctt gttttttata
     3661 atataaattt gtaaaaaact cataaatttt aagactaaat aaagcaaaag gaaggctaaa
     3721 aagattaaaa agaaaagaaa aacgcaaagc aaggatagca aaaatagcat tataaacaaa
     3781 aacaaaaaca aaaaaccatt taaccttact tgtaaaaaca agctttttat ctataccttt
     3841 gttccaaaaa tacaaaatcg gagtatggat caatgcaaaa tatgccaaag agtataaagg
     3901 aaaagctaag aataaaaaat aaggaataaa taaaaaatac aaatgccaca aaggtttatg
     3961 ataatgaaaa aacacgcgtt taaatttata agaataccat tgtaaagcac tcataagata
     4021 aaaagctata caaaaattaa aaaataaaga attaataaaa taaagagtat tgacaagcat
     4081 ttaaatttcc ttaatttttt gagctatgaa agcagaatgt tttaaaaaga aaaaatgatt
     4141 tccctctaaa ggataaaaag tgctattttt taaaaattga tgcatttttt caccacaata
     4201 caaaggcgta gattcatcgc tttcccccca aaaaaccaag cttttagcct tttgcttggc
     4261 aaaaatttca ctaaaatcct catcaacaac ccttttaaag gtttcataca tcataggact
     4321 aagatttgct ccatctttac tagcaaaata gcgataaaat tttcccaaac caaagagttt
     4381 taaaatttta aaaatacgga ttttaaaacg cacttttaga gattttttag ccaaaattcc
     4441 tgcacttgaa agtaagatta gagtgtcttt ttcttttgcg agtagggtac ttacttttcc
     4501 gccaaaagaa tgccccatga aaaaacagac attgagtttt ttttgtttta aaaaaagttc
     4561 tgtgatattg gcgtaatctt gagtgtttaa aatttcttcc acgcttgaat ttccaaaacc
     4621 cgccaaatcc atataaattt gacaaaaatc ttttaaaaaa ggacaaaaac tttgcttcat
     4681 aagttcttta ttagctcccc agccgtgtaa gataagtatt tgcggtaagg aaagatcgcc
     4741 taaaatttca taagaaattt gataagtttt gtttttataa gaaagttgag tttgagccat
     4801 tttaagcctt ttgatttttg tagatatttt ctaaaagttg catggcattt tgtaagcgtt
     4861 caaattcttt catactaagc attacagctt caaatttgtt attttttaaa ataactattt
     4921 ttccactttc actttttttg agtttttcca taatggggct aaaatttctt accacctcgg
     4981 tggcagtgta aatttcatct tgtttaaaag agagcatttt tcttcctaaa atacgctaaa
     5041 ttttatgtat aatttagcgt attttgactt aaaagcttat aattttcctt tttgtccgtt
     5101 gatggagtga aggaagttgt agttgatttt tatcattttt tcaagtgaaa tttgatcagc
     5161 taaagcgttt aaagtggtat taaaatcttt aaaaagataa ttagccaaag aaccaggatt
     5221 tgggttgatt tcatttaaat atatttcatt atccagtata aaaaaatcgc agcgtattaa
     5281 agcaccttta aacaaaggat tgtagatctt tttaaaactg tctttgagtt tttcttttaa
     5341 ttcttcgctt aaatccgctt ctataagctc attgtgtcct gaaaagctaa gatatttttg
     5401 ttcaaagtct aaaaattctt ttttctttgg ctcttctatg atggaaaaaa caaactcatc
     5461 attgatcata catcctgcaa gattgtattc tttgatattg tttttaaatt cttccactac
     5521 aagatcatta tcaaattcaa aacctacatc tttggcatat tctaaatctt tttcatcttt
     5581 tactatgcta atgcctatac tacttccaag tcttgcaggt ttgataatgc aaggaaaatt
     5641 aagcttttct ttagagtttt gattttttct tagcatggta taatcaagtg tttttactcc
     5701 aacgcttttg gcataaagtt tggtaagttc tttgttgaaa gataatacac tagcttcaag
     5761 cctaggtcct ataaatttaa tagaataaaa ctcaaataaa gccgcaattt ttccatcttc
     5821 tccatctcta ccatggataa gattgatcac gcattcgcac tctagtttat tttcttttaa
     5881 aaagccttta ctaaaaaaac ctccttgttt gatgaaaagt tctttttctt ttttataagc
     5941 tttggtgcta aaagttttag aattcatttt ttcacttggg atatgataaa atcttctttc
     6001 ttcatcacaa aaaataaatt ctaaattttg attgataact tttttaagta ctacagcact
     6061 tactatactg atctcatgtt cataagaatt tccgccaaaa agtattgcaa atttcatttt
     6121 attcctttat cctagttttt taagagcttc tttgatgagt tcgcttgtgc ttgttgcttg
     6181 agcacttgct aaaacactta tgattttttc ttgtttaaag cctagagtaa gaagtgcggc
     6241 taaggcttcg cttttatcat cgcttacatt ttcaagtttg gtttttgtgt cagaaagttc
     6301 tactataatg cgttttgcac tttttggacc tatgccaggt acttttttaa gcacgctttc
     6361 atcgcccaaa cttaacgctt tgtaaaaaga atttacatca agactagagc ataccgccat
     6421 agcagtattt gcacccactc cattgacttt taaaagcatt tcaaacattt tttgttcatc
     6481 tttatccaaa aagccataaa atttattaga atcttctttg atgatttgag tgataaaaaa
     6541 ctcatgcttt tcttgagttt gaattttagc agaacaaaaa agcgaaataa atatcccata
     6601 gcttaaacca ctagcgcatt taacaatgat aaaagtaggt tctttttttg tgattattcc
     6661 ttcgatgccg acaaccatgc tatatccttt tcttcataat ctaatttttt atgtatttct
     6721 atactttctt ggttgttttg tatgactttt ttaatgccta taaatttagc actttcatta
     6781 acaaatgaag agtaaaaaat atcttcttta ggctctagaa gtgaaaattt gatttcattc
     6841 atatcagtcc atttgccact tttatttata aaagttgctt caaaaagcat tttttgcaaa
     6901 ttgattaatt ctaattgtaa agattttttg cgttcaagaa gttctttttc ttcattttgt
     6961 agtttattta attcaagatt ttgcaaagag aaatctttta gggctttttc gtattgtaca
     7021 ggaacatttt gaccttgatt tttaagttct gttatctttt tttcaacgct taaaattcca
     7081 tttttgcttg ataaaatgta ttgtcttatt ttatttattt tatgatttaa cttagaaatt
     7141 tgctctccta aaatcgcaaa ttcttcatca taatttttat caagagtttt aattttagca
     7201 tgaaatttat tgttatcccc gttaatgcgt tctattgtgg tgttttcaaa aaacacacaa
     7261 gaattattac tttctaaatt ttctatatag attttatcag cttgtatatt tccacctaag
     7321 ctttttttaa ttctcacttc tttagctttg attgttccac cttcgagcaa atctatattt
     7381 aaaatttcgg cttctgcaaa tcctctatga gtttttatat aggcttgttt ggcttgaatt
     7441 ttggctttag agtgtgtagt gccttcaatt ttcattttag tggcattaag ttgagtgttg
     7501 cttcctacgc ttccgactac atttaattct tcacattcta tcccaacgcc agaatttaca
     7561 gcatctttta cttctgaaag aaattttata ttgattttga catttttgtc tagtccagct
     7621 cttataatcc ctatattttt aaaatctact ccattaaaat ctagttcatt ggcaatatca
     7681 aatttttcac catcttgtac tacataacct ttttttaaag ctatatattc tgtgtatcca
     7741 tcttgctcta cttgtttaaa agctgaagaa caagaaaatt taactttatt ttcatttgcg
     7801 gctaaaactt ttaaggtgtg taaatttaag tcttttcctt ctttaccttg tttaaatttg
     7861 gcgtgtttta aaacaacttc attttcatca acaacaataa tacctgagcg tttttcatcg
     7921 atagtgtagt ttttggtttt ttctttataa gtcaagatca gggattcatc ttgactttct
     7981 ataggatcaa taccttgtgc aacggtgatt tgtatagttt tatttaaagg agtgttttta
     8041 tgttggttgc aaaaagacat taaatttttc ttaaaatcaa aaatgcggat acctattaaa
     8101 aatttaagtt tcaacatctt tttataaata ttttgcaaaa gttctagtgc tagtttttca
     8161 tgaaagtcta aatttgtaaa atcaatttga gcaattattt tggttaaatt tttattcgca
     8221 actagtttga ctgcttgaga tgctttgctt tggtttatac cgtggaaaat ttctattttg
     8281 tattcttgct tgatttgaag atcatttttt aaaaaaattt catctttatc aaaaagagtt
     8341 aattcttttt cagagatttt ttcccattct aaatctccaa agcgatattg tgtagaaaat
     8401 gccaataaac taaaatcaag ctcatttaag ctaaggtttg ttcgtgaagt tacgcttaaa
     8461 agctctcgag ctggattttc tgtataggca ataatttttt catccaaagc caaaactttc
     8521 cccttgtaaa aaattaagaa tgtaattata gtcaattttt aatcaatttt agttaaaata
     8581 gttctcttta tattttgaaa tttatgaaaa aatttaatga agagtttagt atttaaaaat
     8641 tttattatca atgctttagg aattttattt tcaagaattt tagggcttgc tagagatgtt
     8701 ttaatagcgc tttttttagg agcagggctt tatagtgata ttttttttgt ggctttaaaa
     8761 atgcctgctt tttttagaag aatttttgca gaaggagctt ttggacaaag ttttttgcct
     8821 aattttgtaa aagcgaaaaa aaaaggagct ttttgcgtta gtgtaatgat gcaatttagc
     8881 cttatagttt ttttattttg tcttttggta agttttttct cctctttttt tactaagctt
     8941 tttgcttttg ggtttaacgc agatactata gctttagcag ctcctttggt ggcgattaat
     9001 ttttggtatt tgttttttat ttttttagtt acttttttag gagctatttt aaattataga
     9061 caaaaatttt tcattacctc tttttctgcg gcattattta acttaagtat tgttatagct
     9121 gccttttttg tggataaaaa tgcaccgcaa aatacacttt attatttttc ttatgcaacg
     9181 gttttaagtg gggtagcaca gcttatttta catttgcttg ttttaaaaaa caatcctgta
     9241 atccgtgcta tggctttaag tataaaattt aaaaaagcta aggcgaaatt acaaggtttt
     9301 tatggcaatt tttttcatgg agttttaggt tcttctgcga ctcaatttag ctcattgctt
     9361 gatacaacca tagctagttt tttaatgagc gggagtattt cttatcttta ttatgcaaat
     9421 cgtgtcttcc aactccccct tgcgcttttt gctatcgctt taactcaagt ttcttttcca
     9481 aaaattttaa aacatttaaa aagtgatcaa gaaaatttag ccttaaaatt tatgcaaaga
     9541 gcattagcgc ttttaagcat tttgcttatt gcttctagta ttgtaggttc tgtatttgct
     9601 ttggaaattt caaagctttt atttgaaaga ggaaatttca ctcacgaaga tagtgtgatt
     9661 acggcttatg ttttgattgc ttatcttata gggcttttac cttttggttt gcaaaagctt
     9721 ttttctttgt ggctttatgc aaaatttaaa caaaaaacag cagcttggat cgcggtaaaa
     9781 tctttaatta tcagtgcttt atgttctatg gcttttatat ttttgattaa agatgaaagt
     9841 ttaaaggtta ttgcagtagc actttcaagc tctattagtg ctttttattt gcttggagct
     9901 aatatcaaag aatttggttt taagaaattt tttgctttaa tatctattaa aatttgctta
     9961 ttggttatag ttgctttgat tgtttttacg atcttgctta ttttgattaa accttatatt
    10021 ttaagttttt ttataggaat ttttacaagt tttaaaggag ttttttaatg agattattag
    10081 acagtgtaac aaaagagaaa ataaaacttg ataaaaaaga tatcagtatt tacttatgcg
    10141 ggcctacggt ttacgatgat gcacatttag gacatgcaag aagtagtgtt tgttttgatc
    10201 ttttgcgtag ggttttactt gctcagggca atagggtaaa atttgctaga aattatacag
    10261 atattgatga taagattttg aaaaaaatgg ctcaaagtgg tcaaacttta gaggaaatta
    10321 cggaatttta tatcaaaagt tatgaagagg atatgagggt tttaaatgta ttagatcctg
    10381 attttaaacc tcgtgcaacg cattatataa cagctatgct tgatttgatt aaaaagcttg
    10441 ctaaggatgg gtttgtttat actctagaag atggaattta ttttgataca agtaaagatg
    10501 aaaaatattt aagcctatca aatcgcaatt tagaagaaaa catctctcgt ctaagtaatg
    10561 aagtgcaaaa aagaaatgaa agcgattttg tgctttggaa atttgatgaa aatttttacg
    10621 aaagtgaatt tggcaaaggg cgtccaggtt ggcatactga atgtgttgct atgattgatt
    10681 ctatttttga aaatactctt gatatacatg ctggagggat agatttgctt tttcctcatc
    10741 atgaaaatga agctgcgcaa tgtcgttgtg gatgtaagag aaaattagca aatatttggc
    10801 ttcacaatgg ttttgtaaaa atcgatggcg aaaaaatgag taaaagttta aataatagtt
    10861 tttttataaa agatgcttta aaagaattta tgggcgaggc tttaagattt tatcttttga
    10921 gttctcatta tagatctcat tttaattatt ctttatcgga tttagaaaat gctaaaaaac
    10981 gtttagataa attttatcgc cttaaaaaaa gattggattt aagtgaaatt tctgattttg
    11041 atgttttaaa tgatattgaa ataaaaagcg aaattgctaa gcaaatttta gagattttaa
    11101 atgatgattt aaatatttct aaagccttag ctcttttaga tgattttata agtaatgcaa
    11161 atttagagtt ggataaagaa agcaaaaata aaattttaaa acaaaatatc aaagaagctt
    11221 taagtgagct agctaaaatt tttggctttg gttttatgga tacaacttta tattttcaat
    11281 ggggtgtaag caaagaagaa cgagaagaga ttgaaaagtt aattttagaa agaactgagg
    11341 ctaagaaaaa caaagatttt aacacagctg atgcaataag agagcaatta aatagtaaaa
    11401 aaatcactct tttagatact ccaaatggaa caatttggga gaaaataaat gcataatgag
    11461 atgaatttaa aagaggtttt aatacgcttt aagccctttt ataaaagata ttggaaacaa
    11521 tttgctatag ctatttttgg tatgatttta gcaagcggag gaactgctgg aagtttttat
    11581 gctttagagc ctattttaaa ttatattttc gttgaaaaaa atgaagcttt actttataca
    11641 gtgccttttt tgctagtatt gatgtatttt tttaaaaatc ttggaactta tttacaaagt
    11701 ttttatgttt cctttatagg aacagatatg ttaagagtat tgcgtgctag ggttttgaaa
    11761 aatgttttac gcttggatat ggattttttt aaacgctata gaagcggaga gcttgtaagt
    11821 cgttgtacta atgatattaa tgcacttcaa agcatagtat caaacattat tcctgatttt
    11881 tttagagagc ttttaactgc tataggactg cttgcggtag tcttgtatca aagtcctact
    11941 ttggcttttt ttgctttagt gattttgcct ttagctattt ttcctttggt atggtttgct
    12001 aaaaaactta aaaaatatgc aagaaatata caagaaacaa attcggattt actttcttat
    12061 ttgggtgaaa ttttttcaaa tattgaattg atcaaagcta atgataatga aaaaaaagaa
    12121 agtgataaat ttgctaagca taatgatact ttatgtaaat taaacctaaa atccgcacgt
    12181 attgatgcac ttacaagtcc tttaatggat atgatgggtt ctgttggggt tgctgtggtg
    12241 attattgtag ggggtagaga ggttatcaat ggttctatga gtgtgggaag ttttatcagt
    12301 tttgtttcgg cactttttgc gatatatact cctttaaagc gtctttcgtc tttatatgga
    12361 aaacttcaag gtgctgttgc ggcaagtgaa agaacttttt atttattgga tttagaacct
    12421 caaattaaag gtggaagcaa agaattaaaa aacattgaaa aaattagctt tgaaaatgtt
    12481 gaatttgctt atgaaaaccc gcataaaagt gttttaaaag gcgtaaattt tgattttgtt
    12541 aaagggcaaa tgcttgctct tgtagggaca agtgggggtg gcaaatcttc tattattaat
    12601 cttttgatgt atttttatga aaagcaaaaa ggtaaaattt tactcaatca agaagatatt
    12661 agcactttta ccatagaaag cttacatgct aaaataggac ttgtaacgca aaatatttat
    12721 ctttttaatg atagttttgc tgcaaatatt gcttatagcg aagagttaga agaagaaaaa
    12781 gtcatccaag ctttaaaatt ggccaatgcc tatgaatttg ttaaagaaat gggcgggatt
    12841 tgggctgaag tgaaagaaca tggtaaaaac ttaagtggag gacaaaaaca aagaatagca
    12901 atcgctagag ctttatataa aaatcctgat gtgcttattt ttgatgaagc aacttcagct
    12961 ttggataatg aaagtgaaaa agcaatagtt aaaactatag aaaatttaaa acaagacaga
    13021 ttgattttag tggttgcaca tcgtttaagc actatagaaa atgcagataa aatagtagta
    13081 ttggataagg gtaaggtatt ggcaataggt aaagatgaag agcttttgca aacttgttct
    13141 ttgtatcaaa aatttaaaag caaagaaaaa acaaagccta gctttagtta attttagtta
    13201 gaattttaaa aaggattaaa aaatggctta tgaaatgata aaacctttac tttttaagtt
    13261 aaaccctgag tatacacatg ctttggttga atgtagctta agggctttaa gtgctagttt
    13321 tccaggagct ttaagttttt tagcacacaa atatatagtt gataatgaga gtttaaggca
    13381 aaatttactt ggacttgatt ttaataaccc tgtgggttta gcaggaggct ttgataaaaa
    13441 tgctactatg ataagacctt tgagtgcttt aggatttggc tttttagaag tgggaacttt
    13501 tactccaaaa cctcaagaag gcaatgaaaa accacgtcta tttagacttg taaaacaaga
    13561 aagtatacaa aatgctatgg gttttaacaa cgaaggtgct gaaaagattg ctttaagact
    13621 tgcaaaaact tatccttttg ttttaccctt aggagtaaat atagggaaaa ataaaatcac
    13681 tccaaatgat aaagccttgg aggattattt tactttgttt agagatttta aggatttatg
    13741 tgattatttt atcgttaata tctcatctcc taatactaaa aatttaagag agttacaaaa
    13801 tgatgatttt ttaaatacct tgcttgaaga agccaaaaaa attacttcta agcctatttt
    13861 gataaaaatt gctcctgata taaaaataga tgatgcttta aatttatgtg aaaatgctat
    13921 taaaaaaggt gcagatgggt ttatattagc caatactagt gttgattata gcttgctaga
    13981 taataatcgt acttttggtg gtattagcgg aaggctgatt acggaaaaaa gtggtatttt
    14041 tttcaaagaa gtagctaaga ttctttttgg taaaaccttg cttattgcaa gtggagggat
    14101 tgatagtgct gatattgctt atgatcgtat taaaaatggg gctaatttgg tgcaagttta
    14161 tacagctttg atttttaaag gtccttcttt ggtaaaaaat atcaatcaaa atcttataga
    14221 gcttttaaga aaagatggtt ttttacacat tagcgaagct gttggggtaa atttaaaatg
    14281 attgcttatg aaaaaattca attaaaaaac aagcttgaaa tttatgcttt gcctgtaaat
    14341 aaaaatagcg atgtgattag cgttgatatt ttttataaag tgggttcaag aaatgagatc
    14401 atgggaaaaa gtggcatagc tcatatgtta gaacatttaa attttaaaag tactaaaaat
    14461 ttaaaagctg gcgaatttga tgagattgtt aaaggttttg gtggtgtgga taatgcaagc
    14521 acaggttttg actatactca ttattatatt aaatgtgcga agaaaaattt agataaagct
    14581 ttagagcttt ttgcggaact tatggcgaat ttaaatttaa aagatgaaga atttcagcct
    14641 gaaagagcag tggttttaga agagcgtaga tggagaacag ataataaccc tttaggatat
    14701 ctttatttta gactttttaa tcatgcattt atgtatcatc cttatcattg gactcctata
    14761 ggttttttta aagatataga aaattggagc attgaggata ttaaagaatt tcacagtatt
    14821 tactatcaac ctaaaaatgc gattttactt gtaagtggcg atatagaaag taaagaagtt
    14881 tttgagcttt caaaacaaca ttttgaaaag attaaaaata ctaagactat gcctaaaatt
    14941 cacacaaaag agcctaagca agatggagta aaaagaatat atttgcataa aaactcagat
    15001 actgaactat tagcccttgc ttataaaatt ccaaatttca agcacaaaga tatacctgct
    15061 ttaaatgctt tatccgagct tttaggaagt gggaaaagtt ctttaatgag tgaaattttg
    15121 attgataaat taaatttaat caatgattat tatgcttatg ttaatgattg tatagatgaa
    15181 aatttattta tttttatttg taattgtaac cccaatgtta atgcagaaaa agtagaaaaa
    15241 gagcttttaa aaatcattga taaacttaaa atgggtaaaa tttctcaaaa agatttgcaa
    15301 agagtgaaaa ataatgtcaa aagtgatttt attttctcac ttaacaatgc tagtgcagtg
    15361 gcaaatattt atggttcata tctagcaaga ggagatatca atcctttgtt aaattatgag
    15421 aaagatatac aaaatttgga attaaaagat ttgatttctt gtgctaaaaa atattttatt
    15481 caagaaaatt caactacggt aattctaaga aaggattcaa atggataaaa atattatcat
    15541 tggggcgatg acagccctta ttacaccgtt taaaaatgga aaagttgatg agcaaagcta
    15601 tgcaagattg attaaaagac aaatagaaaa tggcatcgat gcagtagttc cagtaggaac
    15661 aacaggagaa agtgcaactt taacccatga agaacataga acttgcatag aaatagccgt
    15721 tgaaacttgc aaaggaacta aggttaaggt tttagcaggt gcgggaagta atgcaactca
    15781 tgaggcagtg ggtttggcta aatttgctaa agaacatggt gctgatggga ttttaagtgt
    15841 ggcaccgtat tataataaac ctacgcaaca aggactttac gagcattata aggctattgc
    15901 gcaaagtgta gatattcctg tgcttttata taatgttcca ggaagaacag gttgtgaaat
    15961 ttcaacagat actattatca agctttttag agattgtgaa aatatttatg gggtaaaaga
    16021 agcgagtgga aatatcgata agtgtgtgga tttgcttgcg cacgaaccta gaatgatgct
    16081 tatttcagga gaagatgcaa tcaattatcc tatactttca aatggcggaa agggagttat
    16141 ttcagtaact tcaaatttat tacctgatat gattagtgct ttaactcatt tcgctttaga
    16201 tgaaaattat aaagaagcta aaaaaatcaa tgatgaactt tataatatca ataaaatttt
    16261 attttgcgaa agtaatccta ttcctattaa aacggctatg tatatagctg gattgataga
    16321 aagtttggag tttagacttc ctctttgtcc tctaagtaag gaaaattttg ctaaaattga
    16381 agaagtgatg aaaaaatata agatcaaagg attttaatga atacagaatt tcaaggaaaa
    16441 actttagtaa tcagcggtgg aactcgcggg ataggcaaag ctatagttta tgaatttgct
    16501 aaagtgggtg caaatatagc ttttacttat aattccaatg cacaaattgc tgatgaaatg
    16561 gtgcaagatt tggaaaaaaa ttataaaatc aaagctagag cttatgagtt taatatctta
    16621 gaacctgaaa cttataaaga actttttgaa aaaattgatg tggattttga tagggtggat
    16681 tattttatct caaatgctat catttcagga cgtgcggttg taggtggtta tactaaattt
    16741 atgaagttaa aaccaaaagg aattaataac atctttacag ccacagttaa tgcttttgtt
    16801 gtgggcgcac aagaagcagc caaaagaatg gaaaaagtag ggggtggaag cattatttct
    16861 atctcatcta caggaaattt agtgtatata gaaaattatt caggtcatgg cacagcaaaa
    16921 gctgccgtag aagctatggc aagatatgcg gctactgaac ttggagaaaa aaatatccgt
    16981 gtaaatgtcg taagtggcgg gcctattgaa actgatgctt taagagcttt tataaattat
    17041 gaagaagtaa aacaggctac tataaattta agccctttaa atcgcatggg gcagcctgaa
    17101 gatttggctg gagcatgtct ttttctttgt tcaagtaagg caagttgggt tacaggacat
    17161 actttcatcg ttgatggtgg tacaactttt aaataaaaat taagaaaaat caatggattt
    17221 ttcttaaaaa tatttttcaa tcaagtttta atttccaccc taaaaaaaca cttaataatg
    17281 caagtaaaaa aataaaattt aaagtccaat taccaaaacc tataaaacct atagataata
    17341 cgctgtaaaa aaatcctcct acagctgaat aaatacaaat cgtacttaaa gatccatttt
    17401 ctgccatttt tttacatggg cagattttat aaaatttttt atcattaaat tgatttttct
    17461 ttttatttcc caaaaataaa ccaaaaaggg caaaaagatt taaaaaaata aaagcatata
    17521 ataaaatttg atctaattcc attttaatat accttaaaaa tatctaagcc aagagggtag
    17581 atggacttgc tcttctttta aagtagtttc ttgtccatgt cctggcaaaa gtttaaaatc
    17641 ttctttgtaa gtcataactt tttctaagct ttgtttcatt aaatttgcat ctgaataagg
    17701 aaaatcccat cttcctatgc ttctataaaa taaaaaatct ccactaaaca tgatattttt
    17761 acctacaatt tctatcatag tgcaacctgg tgtgtgtcct ggtaaaaagt gaaatttaaa
    17821 atcaactccg caaatattta aaatatcttc attatctact aaaaaatccg catcgctaga
    17881 atcatagcct tgattgaaat catcatgtag cataaaagca tcatttttat gaatataaat
    17941 ggggatttga taggcttgtt ttactttttc attatcccaa acatgatcgt aatgtccgtg
    18001 agtgtttaaa atcgctaaag gattttttac atgttttttg atgaaattta gcgcatcaaa
    18061 accaggatca attataattt ctccatgctc accaaataaa atataacaat ttgtctcata
    18121 agctccacaa gcttgtttga taatttgcat tttttgcctc tttaataaaa aatttgcctt
    18181 aaataaatat aattatacat taaattttta aaaggcaagc tttatggatt ggcaaaagat
    18241 tacggaaaaa atgtgtgatt ttatacaaga aaaagtgaaa aattctcaaa gtcaaggtgt
    18301 ggttttgggg cttagtggtg ggattgattc tgctttagta gcaacgcttt gtaaaagagc
    18361 tttaaaagaa aatgtttttg ctcttttaat gccaactcaa atttcaaata aagtcaatct
    18421 tgaagatgct ttaaggcttt gtgcggattt aaatcttgaa tataaaatca tagaaattca
    18481 aagcatttta gatgctttta taaagcaaag tgaaaatacc actctagtat ctttgggaaa
    18541 ttttgcagct cgtattagaa tgagtttgct ttatgattat tctgctttga aaaattcttt
    18601 agtcataggc acttctaata aaagcgaatt acttttgggt tatggtacga tttatggaga
    18661 tttagcttgt gcttttaatc ctataggatc gctttataaa agtgaaattt atgccttagc
    18721 aaaatacctt aacttgcatg aaaattttat caaaaaagct ccaagtgcgg atctttggga
    18781 aaatcaaagc gatgaagcgg atttgggttt ttcttatgca aaaatcgatg agggcttaaa
    18841 agctttggaa aataatgacg aaaagctttt aaaaacactg gatccttctt tgattgctat
    18901 gttaaaaaat cgcatgcaaa aaaatgcttt taagggaaaa atgcctgaaa ttttggaaat
    18961 ttaaacaatg aatgaagaaa aaaattatga actttggctt gataattatt tttttaagcc
    19021 caatttttgg caaaaatgcc ttgcttttgt actttttccc ttaagtgtgc tttatgcttt
    19081 ttttgcgatt ttaaatactt tttttcgtaa aaaaatagtt tttaaaaaac ctgttattag
    19141 cgttggtaat ttaagttttg gaggtaatgg aaaaaccccg ctttgtaaag ctatagcaag
    19201 ggaatttgat ggcgttttta tagtacttag gggctataaa agaaaatcta aaggtttgtt
    19261 tgttgttaaa aatcaaaatg aaattttatg caccttaaca caaagtggcg atgaagctat
    19321 ggagtatgct tttgaagaaa atatcaaagg tgtgattgtg agcgaagata gagtaaaagg
    19381 tattgaaaaa gcttttgaat tgggagctaa aatcgttgta cttgatgatg ctttttctaa
    19441 atttcatatt aaaaaatttg atattttact tgaaggtaaa atcaaacctt attttaattt
    19501 taccctacca agtggagctt atcgtttgcc gaaattttat gaaaaaaggg ctgattttat
    19561 tgcattagaa ggcagggatt ttgtgcgtta ttcttttgta aaagaaaatc caaaggctat
    19621 tttggtaact gctattgcta aaccttttag attgtatgaa cattttatca aagcaagggc
    19681 ttgttatttt tttaaagatc attatgagtt taaaaaagaa gaattagaaa atttgctaaa
    19741 aaaacataat tgcgatacac taatgcttac ttttaaggat tttgttaaag ttaaagattt
    19801 tggttttaaa tgtcaaatta tagaattaaa tatagaatta aaagattcat taagggaaaa
    19861 aataaaaact tatatcaagg agtttgagca atgaaattag tcgagagtag aaatgtaaat
    19921 aatgtatcaa gttttaagga agctttgatt aacccaaacg ccccagaagg agggctttac
    19981 tcacctttaa atttgcctat ttttgaagga gaaaaatatg ccaatttgtc ttataaagat
    20041 tttgctttaa agcttataga aagttttggt tttggcgaag aagagctttt taaaaaggct
    20101 ttgaaaagtt acgaaagctt tgatgataaa aatacaccta tttctttgca aaaaatctct
    20161 gaaaaaacct atattaacga gctttggcat gggcctacaa gagcttttaa agatatggct
    20221 ttacagcctt ttggcgtgct tttaagcgaa ttttcaaagg ataaaaatat tttaattatt
    20281 tgtgctacga gcggcgatac aggacctgca accttaaaaa gctttgaaaa tgcaaaaaat
    20341 gttaaagtag cttgtatgta tccaaaaggt ggcacaagtg gagttcaaga gttgcaaatg
    20401 cgagctttag ataaggataa tttgaaagtt tttgctatag atgaggattt tgacgcagcg
    20461 caacgcactt taaaagaatt gcttttttca aaagattttc aaaacgaaat tagagcttta
    20521 aattatgagc tttgcgtagc gaattctgta aattttgggc gtattttatt tcagattatt
    20581 tatcattatt atgcgagttt aaaacttttt aatgagtttt tagaagaagt acaaatcatt
    20641 gttccaagtg gaaattttgg caatgcttta ggggcttttt atgctaaaaa aatgggagct
    20701 aaaatttcaa aaatcaaaat cgcttcaaat gtgaataata ttttgagtga attttttaat
    20761 catggcgttt atgatttgcg tgaaaaaagt cttaagaaga ctatttctcc agctatggat
    20821 atacttattt catctaatat cgaaagactt ttgtttgcga aatttaaaga taaaagaacc
    20881 aaagaactga tgaatttgtt gaaaaatgag agatatttta aacttgaaaa agaagaattg
    20941 caaagtttgc aagaagattt tgaggcggat ttttgcaccg atgaagaatg tatgcaattt
    21001 atcaaacaaa gcaagatttt aatcgatccg cacaccgcaa cttgttttaa aatgcttgat
    21061 cctttaaaac ctagcattat tacctctaca gcagaatgga caaaatttac tccaagtatg
    21121 ataaaagctt tatacgatag ggattctaag aatgaaaaag aagatttaaa atttatagct
    21181 aaagagttta atgtccaagt taaagatgaa attttggctt tatttgactt gaaaaatagc
    21241 gatgaaaagg tatttgaagt caaaaatata aaaaaagaaa ttttagattg gatgcaaaaa
    21301 tgattattat tcctgcaaga ttaaaatcaa gtcgttttca tgagaaaatt ttatgtgatg
    21361 taggtggagt gcctatgttt gtggctactg caagaagggt aagtagtgtg gatgaagttt
    21421 gtatagcttt agatgatgaa aaagttttaa gtatcgctaa agaatatggt ttaaatgcag
    21481 ttttaacaag caaaaatcat gaaagcggta cggataggat taatgaagct tgtaagaaac
    21541 tagctttaaa agatgatgag attattatca atgtccaagc tgatgagcct tttatagaat
    21601 gtgaaaattt attaaaattt aaagaatttg caagttcttg cttggataaa aaagctttta
    21661 tggcgagttg ttataaaaaa atcactcaag aagaagctat ggatcctaat ttggttaaag
    21721 tgctttgcga taaagaagga tatgctttgt atttttcaag agctaaaatc ccttatgaaa
    21781 gagaaaatta cgaggaaagt tttaaagggc atttaggcat ttatgcttat agtgtaaaag
    21841 ctttaagaga gttttgttct ttattaagtt ctgcacttga aagagcggaa aaattagagc
    21901 aattaagagc tatagaaaat ggtaaaaaaa tcaaaatgct tgaaatttca acaacaagca
    21961 tggggattga taccaaagaa gactatgaaa aggctttaaa aatttattta gaaaaataac
    22021 tccaccccaa aacggaacag atcttgctta tattatttta atatatttag gttgaaggca
    22081 aaaaatctaa atcaaggaat taatatgagt atctttagta tcaatgataa ctcaaactat
    22141 aattctatac tttcacaagc aaaagctaat aaagaaggta aagaaaattc taaaataagt
    22201 tttgctaatg cttttttaaa acaaaatgct agtaagttaa atgaaattca aaatgcaaat
    22261 tcacaaactc tagcaagaag tgaagcatta aattctacta atacaacaaa tgctagtaat
    22321 aacactaatc ttagcattaa taataccact caaacagctt cccctaatta taatatatca
    22381 agtgaattta aaaactctat ttatactcta aaatacaaac aagcagatat aagtaatact
    22441 tctactaata cagcttatgg ttatagtgta gataaagatg gttatatggg aagtgacttt
    22501 aacaaagccg caggattgcc tgaagatttt aagatacata aatctacttt ggatgagata
    22561 tatagtttca atacaagttt taaagaacac actgcaaacg atttaggcgt ttcaaattat
    22621 ttattataca aacatagata tggccgatac cataagacaa tactattcca aatttaatca
    22681 aattataaat catagttttg gtaattctaa taaaactagc tttagtatag aagatttaaa
    22741 ttctttacca aaggggtata gtattcataa tacggatttt aagtttatgt ttcaaaattt
    22801 agatagtcaa actataacaa atttctataa tacacaagaa cgatataatg aagcagaaca
    22861 attaggaatg tttgggcata ttaatatagg cttacaacca ttaaatttca ctccgcaaag
    22921 tatgcaaact caaaatttag atgaaaatag tgcaaaatat acttttaatc ctgatatgtc
    22981 agtttatcca caaaatgaag atggaagtta ttctaaagaa gctttgttta tgagtttttt
    23041 aaaatctagc ggtggagaag ctttagaagg tggtaataca acattaaatc cattagttaa
    23101 agcacatatt gaagctatga cgaaagaaag ctttgatggc tctttagctt ctttagatga
    23161 cattatgaca ggtaaagttg attttgcaag tttgttaaaa ggctatgcac aagagggttg
    23221 gcttgatgca gatatatatg caatggaaaa aggagttaaa tggcaaaata caagtatagg
    23281 ttatggtgga gcttggtttg ataatcagtt taatcaagca aaagctaatg gttggaaagc
    23341 aagtaaccaa agtatagact cttatgttag ttctataatg gatagactta ataatcttat
    23401 aggacaaact agggtttagg aagtattaat tttttaagtt cgaaataaat tgctaataac
    23461 aaaataagat aaaattggta taattttttt acaaaaaaat ttgaaaggaa attatgaaaa
    23521 aaattatttt gatttttatc tctttttttg ctttaaattt gagtgcaaaa gatttggttg
    23581 taggaatgga gcttggatat ccgccttttg aaatgagcga taaaacaggc aaagcaagtg
    23641 gaattagcgt ggatttttta gaagcttttg caaagaaaaa cggctataaa cttgtagtaa
    23701 aaaatatcgc ttgggatggt ttaatacctg ctttaaaaac agccaagata gatcttatta
    23761 tgtcctctat gacaattacc gatgagagaa agaaagtggt ggattttagc attccttatg
    23821 ctaaggcaaa tttggctatt ttaactcctt tgaactctga tattacaaat atcaaagatt
    23881 tagataaaaa gggcaaagtt ttggctttaa agcgtggctc tacaggacat ttatatgcgg
    23941 ttaaaaattt aaaaaatgca actattaatt tatttgataa agaaaatgct gctattttgg
    24001 aagtgattca aggtaaggct gatggatttt tttatgatca acttacgatt tatcgcactt
    24061 ggcaaaaaca tcaagataca actagagcca ttttggcacc ttttcaagaa aatcctgagt
    24121 tttggggtat agcagtacaa aaaggcaatg cagaacttaa aaaagagctt gatgaattta
    24181 ttgcagaaag caaaaaagat gggttttttg attctttagg agagaaatat cttaaagatg
    24241 ttaaagatac ttttaaaaag aataatttag aattcttttt ctaagaagga ttttccttct
    24301 taggttacaa agctttccac aagcctttgc actagcaaat tccatccatc cactaataca
    24361 aaaattaaga gtttaaaagg taaagagatc atagtaggag gtagcatcat catacccata
    24421 gccattaaaa ctgagcttac aaccatatct atgactaaaa agggcaggta gattaaaaac
    24481 cctatttcaa aagcggtttt aagctctgaa atcataaaag caggaactaa aaccgtaagg
    24541 ggaacatcat ctatggtttt gggattaggt agattgcgta tgcgataaaa aagggctaaa
    24601 tctttttcgc gagtattttt aagcataaaa tctttaaaag gctttgctcc ttttataaaa
    24661 gcctcttcat agcctatttt ttctgctaaa taaggtttta taccttcatt ataggatttt
    24721 gtagctacag gttccatgat aaaaaaagtt aaaattaaag ccaaggttac caaaatagtg
    24781 ttaggtggca tactttgcgt ccccatagct tgtcgtaaaa atgaaaatac tacaataaga
    24841 cgcaagaaag aagtcataac aaaaactata cttggagcga gcgcaagtat ggttaaaaca
    24901 atcactatat ttaaagtagt aacaagctga ttaggtgtat tgggtgcact taagcttaaa
    24961 tttactgtag ggatagttgc ttcagcagca aataagctca tgcttaaaag taaaaataat
    25021 aatatttttt tcaaaattta aaaacctttt tttgtttttt attaaagaaa tttaaatttt
    25081 atcttttgat gactaaaaac tagtttaagg gtattaggat tttaacttta aactgctaaa
    25141 atagtctttt agacttctta ataacaaagg taaaaaatga aaacttctat tttgatttta
    25201 gcggcaggat taggcactag aataaaatca caaaagccaa aggttttgca agagctttgt
    25261 caaaaaagta tgattttaca cattttaaaa aaggcttttg ctttaagtga tgatgtaagt
    25321 gtagttttat cgcatcaaaa agaacgcgtt gaaaaagaaa ttttagaata ttttccaaaa
    25381 acacaaattt tagagcaaga tttgcaaaat tatccaggaa ctgcgggagc tttaagtggg
    25441 tttgagccta aaaatgaaag agtgttgatt ctttgtggtg atatgccttt ggttgagcaa
    25501 acaagtttgg aagctttgtt gggtaataat gcaaaattaa atctagcagt ttttaaagca
    25561 agagatccta aaagttatgg tagggtggtg ataaaaaacg atagcgttga aaaaattgtt
    25621 gaatttaaag atgcaaatac gcaagaaaaa gagataaata cttgcaatgc tggggtttat
    25681 gtgattgact cgaggctttt aaaagagctt ttacctttga ttgataacaa taatgcggca
    25741 aaagagtatt atttaaccga cattgtaaaa ctagcaaaag aaaaagatgt gatgattaaa
    25801 gcagtttttg tagatgaaga tgaatttatg gggattaatg ataaatttga actcagtata
    25861 gctgaaaatt tcatgcaaaa aaaaattaaa aaatactgga tgcaacaggg tgtgattttt
    25921 catttaccgc aaagcacttt tataggtgca gatgttgaat ttgtaggtga atgtgaagta
    25981 tatgaaaatg taaggataga gggcaaaagt aagattataa actctatcat taaaagttca
    26041 agcgtgatag aaaattccat cgtagaaaat agcgatgtag ggcctttggc acatttgcgt
    26101 ccaaattgtg agttaaaaaa cactcatata ggaaattttg tagaatgcaa aaatgcaaag
    26161 ttaaataccg taaaagcagg gcatttgagt tatttgggag attgtgagat agatagtgga
    26221 accaatatag gctgtgggac tattacatgc aattatgatg gggtaaaaaa gcataaaacc
    26281 atcataggaa aaaatgtttt tgtaggttcg gatacgcaat ttattgcacc tgtaaaaatc
    26341 gaagatgaag tgatcatagc agcaggaagc acagtaagtg tcaatgtaga aaaaggtgct
    26401 ttgtttatca atagagcaga gcataaaatg ataaaagatt attattacaa gaaatttcaa
    26461 aaatgaaaac cgtactttta gccattagtg gcagtatagc tttttataaa tcttacgagc
    26521 ttatttcttt gtttaaaaaa gaaggcttta gggtgaaagt tttgctttct aatggtttgt
    26581 taaaatttgc tagcaaaatg agttttgaag ccttggttga tgaagtttta tgcgaggaaa
    26641 atgaaagttg gcaaaattca aacaatcaca tagcttttag caaggatgta gaccttgttt
    26701 tgtttgcccc tgcaagtgtt aattctatca ataaacttgc ttttggtata gcggataatc
    26761 tttttatcca aaccttaatc gcagcaaata aatctcttat catagctcct gcggcaaata
    26821 caaatatgtt tcatcatttt agcacgcaaa attctttaaa gatgcttaaa gaaaataaag
    26881 ctttgattat agagcctatt tgtaaagttt tagcttgtaa agatgaaggc gtaggagcct
    26941 tagctgaagt taagaatatt tttaatatcg tcaaaagaga acttttaaaa gaaaagtttt
    27001 ggtgcgataa aagtgtagtt atcacaggtg gcggcacaaa agaaaagatc gatgatgtgc
    27061 gttgtgtgag taatttttca agtggaaaaa tggcaaaggc catagctgat gctttttatt
    27121 ttttaggagc tagggtaaaa cttttaagct ctgtggaatt tgatacgcct tatgagcttt
    27181 gcaaatttga aagttctaag gacctaaagg agcttttgga taaaaattta aatcatgact
    27241 ttttgattat gacggctgcg gtaagtgatt ttatccctca aagtgtaaaa gggaaaatta
    27301 aaaaaaatga gcatttacag ggtttaaatt tgcatctatc tttaaatgaa gatttgctta
    27361 aaacttgcaa atttcaaggc aaaaagatag gttttaagat ggaatttgat tctcaaaatg
    27421 ccttagaaaa tgcgaaaaaa tctttaaaag ataagcagct tgatatggtt tgtcttaata
    27481 tcattgatca aaaaaattat tttggaagcg atcaaaatga gctttatttt atcactttaa
    27541 acaatgaaaa taaaagcact ttgcaaagca aagaaaaatt ggcatttgaa ttagtaaaat
    27601 ggtgtgaaaa attatgagta tgattaattc taccttacct atacaaatga aagttttagc
    27661 taaatcaggt tatagacatt atacgctttt attaaatcac aaaaagattc aaaccaaaag
    27721 catgatagag cttgaaattg gtgctgaata tttagctgaa ctttatatgc aaaatggtgg
    27781 agttatacaa tttaaacatc tttcaaagcg tcctaatttt aaaccttttg aagagggatt
    27841 ggctttgata atcgctattt tagaggataa aatttcttat aaaaaattca ttatacaaaa
    27901 tcttttagat tgtaaagata tagagcgtta tcagatatta aaagaaatgc tttttgcaag
    27961 ttttgaaaat atttatcata ttccttttaa ctttgaaaat aaatcttgct tgtttcaaat
    28021 gcgtaaaaga gcaaaatatt tagaaattta cttatatttt agtgtttttg gagctttaaa
    28081 aattttaata gactcgcaag gcattagtgt ttttacacct tttgccaagg tgcaaaaatt
    28141 tttaaacgaa catttagatt ttaatgtatc gcaagaaaac aagattgaac ctttgtttgt
    28201 tttcaaaagg ctttttgatt ttaaaggatg aaaaatgaat gaattaaaac accttgctgt
    28261 tgttatggat ggcaataggc ggtgggctag agctaagggt tttttggcaa agcttggata
    28321 ttcccaagga gtcaaaacta tgcaaaaatt gatggaagtt tgcatggaag aaaatatttc
    28381 aaatttaagc ctttttgctt ttagtacgga aaattggaag cgtcctaaag atgaaattga
    28441 ttttatcttt gaacttttag atcgttgttt agatgaagct ttagaaaaat ttgaaaaaaa
    28501 taatgtgcat ttaagagcta taggtgattt atcgcgctta gaagataaag taagagaaaa
    28561 aattacctta gttgaagaaa aaacaaagca ttgtgacgca ctttgtgtta atttggctat
    28621 aagttatggt gcaagagatg agattataag agctgctaag cgtgtgattg aaaaaaaact
    28681 tgagctaaat gaagaaaatt taacgcaaaa tttagattta cctttagatg tggatttgat
    28741 gcttcgcgtt ggaaacgcta aaagactttc aaatttctta ctttggcagt gttcatatgc
    28801 tgaaatttat tttagtgaaa ctttatttcc atctcttacc aagagagaat ttaaaaggat
    28861 tattaaagaa tttagaaata gagaaagaac ttttggaaaa tgatattttt cataataatt
    28921 ctaggggctt gtttgggttc tttttgcaca agtttggcaa gtaggataat tgaaaaaaag
    28981 ccctttttta tctcgcgctc tttttgtttt tcttgtgata caaaattaaa atactatgaa
    29041 attattccta ttttttctta tattttttta aaggcaaaat gtcaaacttg caaatgtcat
    29101 ttgcctattt ctttgttaat caatgaaatt ttaggcataa ttttgcttat tttggtttat
    29161 tctttaagtc aaaattttta tgatttttta tttttatc
//
LOCUS       DAPIWV010000005        28850 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.005, whole genome shotgun sequence.
ACCESSION   DAPIWV010000005 DAPIWV010000000
VERSION     DAPIWV010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.005"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            126..1532
                     /gene="aspA"
                     /locus_tag="RJ272_000136"
     CDS             126..1532
                     /gene="aspA"
                     /locus_tag="RJ272_000136"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDV7381272.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLGKEQI
                     DEILTPANMLNPHMEAKK"
     gene            1548..2888
                     /locus_tag="RJ272_000137"
     CDS             1548..2888
                     /locus_tag="RJ272_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7381273.1"
                     /translation="MDTIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVVLGLVLG
                     MKPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWL
                     LTILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSG
                     VLEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAG
                     AILHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAA
                     TLITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQ
                     TPAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALF
                     VLPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2996..4357
                     /locus_tag="RJ272_000138"
     CDS             2996..4357
                     /locus_tag="RJ272_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HDV7381274.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVSIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4367..4735
                     /locus_tag="RJ272_000139"
     CDS             4367..4735
                     /locus_tag="RJ272_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDV7381275.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLVSDTRAKEFRLEIKAKN"
     gene            4759..5382
                     /gene="lpoB"
                     /locus_tag="RJ272_000140"
     CDS             4759..5382
                     /gene="lpoB"
                     /locus_tag="RJ272_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HDV7381276.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQIKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5465..6802
                     /locus_tag="RJ272_000141"
     CDS             5465..6802
                     /locus_tag="RJ272_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381277.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNVTNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLTNTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6812..8014
                     /locus_tag="RJ272_000142"
     CDS             6812..8014
                     /locus_tag="RJ272_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381278.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDTNGKYTVNVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDFSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKLSYAKITEGSVKVGDICRPLIGSNSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8173..8481
                     /gene="rplU"
                     /locus_tag="RJ272_000143"
     CDS             8173..8481
                     /gene="rplU"
                     /locus_tag="RJ272_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDV7381279.1"
                     /translation="MYAIIKHSGKQYKVSVGNELKLDHFEAESKANIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8492..8746
                     /gene="rpmA"
                     /locus_tag="RJ272_000144"
     CDS             8492..8746
                     /gene="rpmA"
                     /locus_tag="RJ272_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDV7381280.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8853..9890
                     /gene="obgE"
                     /locus_tag="RJ272_000145"
     CDS             8853..9890
                     /gene="obgE"
                     /locus_tag="RJ272_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HDV7381281.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDVQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVNLGEEFAEQITLNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            10013..10768
                     /gene="proB"
                     /locus_tag="RJ272_000146"
     CDS             10013..10768
                     /gene="proB"
                     /locus_tag="RJ272_000146"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDV7381282.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10842..11759
                     /locus_tag="RJ272_000147"
     CDS             10842..11759
                     /locus_tag="RJ272_000147"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDV7381283.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11722..12375
                     /locus_tag="RJ272_000148"
     CDS             11722..12375
                     /locus_tag="RJ272_000148"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDV7381284.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12372..13157
                     /locus_tag="RJ272_000149"
     CDS             12372..13157
                     /locus_tag="RJ272_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDV7381285.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13163..13999
                     /locus_tag="RJ272_000150"
     CDS             13163..13999
                     /locus_tag="RJ272_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDV7381286.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLGQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            14060..14485
                     /locus_tag="RJ272_000151"
     CDS             14060..14485
                     /locus_tag="RJ272_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HDV7381287.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14496..15008
                     /locus_tag="RJ272_000152"
     CDS             14496..15008
                     /locus_tag="RJ272_000152"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDV7381288.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVENIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            15011..15532
                     /locus_tag="RJ272_000153"
     CDS             15011..15532
                     /locus_tag="RJ272_000153"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDV7381289.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            15546..17051
                     /gene="atpA"
                     /locus_tag="RJ272_000154"
     CDS             15546..17051
                     /gene="atpA"
                     /locus_tag="RJ272_000154"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDV7381290.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFDNGDKGMALNLEESSVGIVILGKGEGLKEGTSVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINSNEFRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQKGQGVVCIYVAIGQKQSTVAQVVKRLEEHGAM
                     DYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIEEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            17060..17944
                     /locus_tag="RJ272_000155"
     CDS             17060..17944
                     /locus_tag="RJ272_000155"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDV7381291.1"
                     /translation="MSNLKEIKRKIKSVYNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLIKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            17969..19366
                     /gene="atpD"
                     /locus_tag="RJ272_000156"
     CDS             17969..19366
                     /gene="atpD"
                     /locus_tag="RJ272_000156"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDV7381292.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            19370..19759
                     /locus_tag="RJ272_000157"
     CDS             19370..19759
                     /locus_tag="RJ272_000157"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDV7381293.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            19759..20313
                     /locus_tag="RJ272_000158"
     CDS             19759..20313
                     /locus_tag="RJ272_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7381294.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            20322..20711
                     /locus_tag="RJ272_000159"
     CDS             20322..20711
                     /locus_tag="RJ272_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HDV7381295.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     NLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            20714..21493
                     /locus_tag="RJ272_000160"
     CDS             20714..21493
                     /locus_tag="RJ272_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HDV7381296.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQVDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            21503..22711
                     /gene="tolB"
                     /locus_tag="RJ272_000161"
     CDS             21503..22711
                     /gene="tolB"
                     /locus_tag="RJ272_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDV7381297.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            22788..23285
                     /gene="pal"
                     /locus_tag="RJ272_000162"
     CDS             22788..23285
                     /gene="pal"
                     /locus_tag="RJ272_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HDV7381298.1"
                     /translation="MKKILFISIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            23289..24236
                     /locus_tag="RJ272_000163"
     CDS             23289..24236
                     /locus_tag="RJ272_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDV7381299.1"
                     /translation="MKKIFTVALLGATLLYAENSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            24251..24820
                     /locus_tag="RJ272_000164"
     CDS             24251..24820
                     /locus_tag="RJ272_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7381300.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            24820..25740
                     /gene="fabD"
                     /locus_tag="RJ272_000165"
     CDS             24820..25740
                     /gene="fabD"
                     /locus_tag="RJ272_000165"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDV7381301.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVVSNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            25737..26426
                     /gene="pfs"
                     /locus_tag="RJ272_000166"
     CDS             25737..26426
                     /gene="pfs"
                     /locus_tag="RJ272_000166"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HDV7381302.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            26423..27178
                     /locus_tag="RJ272_000167"
     CDS             26423..27178
                     /locus_tag="RJ272_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis protein TtcA"
                     /protein_id="HDV7381303.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFEFEAVTLSYGMGEDYSGLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLVPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            27183..27704
                     /locus_tag="RJ272_000168"
     CDS             27183..27704
                     /locus_tag="RJ272_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HDV7381304.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDKNLEKS
                     AFDLLRAYGIEIV"
     gene            27704..28318
                     /gene="recO"
                     /locus_tag="RJ272_000169"
     CDS             27704..28318
                     /gene="recO"
                     /locus_tag="RJ272_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HDV7381305.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKVYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLQECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            28315..28722
                     /gene="ybeY"
                     /locus_tag="RJ272_000170"
     CDS             28315..28722
                     /gene="ybeY"
                     /locus_tag="RJ272_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDV7381306.1"
                     /translation="MILSDEKCDFLEPIASFLSSKHVELVFVESKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLEG"
BASE COUNT        10560 a         3691 c         5351 g         9248 t
ORIGIN      
        1 tttattgtat ttgaaagtag ttttcttatt aaccaattat taactaaaaa tgcaatatca
       61 ttattttatg atttaaatca aaaatttttg attttaaatt aaaatacttt tatgaaaggt
      121 tcaaaatggg aacaagaaaa gaacatgatt ttattgggga attagaaatc tctgatgagg
      181 tttattatgg agtgcaaact tttagagctg ttgaaaattt tgatatttct catgatagat
      241 taaaagattt tcctcgcttt gttagagctt tggctagagt aaaaaaagct gcagctatgg
      301 caaatcatga attaggtctt ttggataaaa atatccaaga tgcgattatt aaagcgtgcg
      361 ataaaatttt agaaggcggg tattatgatc aatttgtagt agatatgatc caaggaggtg
      421 ctggaacaag tacaaatatg aatgctaatg aagttatagc gaacatagga cttgaactta
      481 tgggtcataa aaaaggtgaa taccaatatc ttcatccaaa tgatcatgtt aatttaagcc
      541 aaagtactaa tgatgcttat cctacagctt tacaccttgc cttgcatgat tatttaagtg
      601 atttggcaaa agctatggaa catctaaaaa aagcttatga gagaaaagct gaagaattta
      661 aagatgttct taaaatgggt agaacccaac tgcaagatgc tgtacctatg actttaggtc
      721 gtgaatttaa aacttttgcc gtaatgatag gtgaagatat acaaagagta ttagaagcta
      781 gaaaattgat tttagagatc aatttgggtg gaactgctat tggaacggga attaattctc
      841 atcctgatta tccgaaggtt gtagaaagaa aaataagaga agtgacaggt tttgaatata
      901 ctgtggctga ggatttgatc gaggcgactc aagatacggg agcttatgta caaatttcag
      961 gtgttttaaa acgtgttgca acaaaacttt ctaaagtatg taatgactta agacttttaa
     1021 gtagtggtcc aaaatgtggt cttaatgaga ttaatcttcc aaaaatgcaa ccaggtagtt
     1081 ctatcatgcc aggtaaggta aatcctgtta ttcctgaagt agttaatcaa gtttgttatt
     1141 ttgttattgg agcagacgta actgtaactt ttgcttgtga gggtggacaa ttgcaactta
     1201 atgtttttga accagttgta gcatatagct tatttaattc tgttgtaatg ctagaaaaag
     1261 caatgtatac tttagctgat aaatgtatag atggtattac cgcaaatgaa aaaatttgtt
     1321 cagactttgt ctataattca gtaggtatag taacagcttt aaatccttat attggttatg
     1381 aaaattcagc ttctatagct aaagaggcaa tgaacactgg aaaaagagtg gctgatattg
     1441 cgcttgaaag agggctttta ggtaaagaac aaattgatga aattttaact cctgcaaata
     1501 tgttaaatcc acatatggaa gctaaaaaat aatataaagg cttaaccatg gatacaataa
     1561 tgataatttt gcaagtaatc gtccttcttg gggcgatttt tatcggtatt cgcctaggcg
     1621 gcattgctat aggctatgca ggaggacttg gtgttgttgt tttaggactt gttttgggaa
     1681 tgaaacctgg taatattcct tgggatgtta ttttaattat tgccgcagct attgcagcaa
     1741 tttctgctat gcaacaagca ggtggacttg attatatggt tagggttaca gaaaaaattt
     1801 taagatcaag ccctaaattt ataaattatt tagctccagc ttgcggatgg ttgcttacta
     1861 tcttagcagg aacaggaaat gcagtatttt ctttaatgcc tgttgtagtt gatgttgcaa
     1921 aatctcaaaa tataaaacct agtgttccac tttcattaat ggttgtttct tcgcaaattg
     1981 gaatcactgc ttctcctgtg agtgcagctg tggtttatat gagcggggtt ttagaaccac
     2041 taggatggaa ttatccaact ttaattggaa tttggattag cacaactttt atagcttgta
     2101 tgcttacagc ttttatagtg agtttaatca ctcctatgga tttaagcaaa gatagcgttt
     2161 atcaagaacg cttaaaagca ggacttgtta aagatgcagg agctatttta catggtgaag
     2221 ataaaccagg tgctaaactt tcagtggtaa ttttcttgat cactgttttg gcagttgtac
     2281 tttatgcaac cgcaatttca agcaatatta aatggattga tcctgttgtg gttccaagag
     2341 atgcagctat tatgagcttt ttacttactg cagcaacttt gatcacttgg ctttgtaaag
     2401 ttgaaccagg taaaattctt gataccagtg tatttaaaag tggtatgact gcttgtgttt
     2461 gcgtttttgg tgtagcatgg cttggaaata cttttgttgc aggacacgaa gcttctatta
     2521 aagaagtagc aggcgactgg gttaaacaaa cccctgctat gttagcagtt gcatttttct
     2581 ttgcaagcat gcttttatat tctcaagcag caaccgcaaa ggccattgta cctgtaatta
     2641 tcaccgcttt aggaatttca gcagcaaatc cgcatgattc ttatatgctt gtagcttgtt
     2701 ttgcagcagt ttcggcactt tttgtgcttc caacttatcc aaccttactt ggtgctgtgc
     2761 aaatggatga tacaggaacg actagaattg gtaaatttat atttaatcac tcattcttta
     2821 taccaggggt tttagctatt gcaattgctg tagcattagg ctttgtatta gctcctatgc
     2881 ttatttaaat caaaccctag gtttttctct cctagggtta aaattttttc attagttttt
     2941 aagtatatac tacgctataa tattcatttt taattttctt taagaaagga atttaatgaa
     3001 gataaaagtt gggttgattt tttcaggtat tgcttgcctt tttttaacag cttgtgttaa
     3061 tcaggttaaa caaaatacaa catttgaaaa tactttaaca caaaaatatt gtggtgatga
     3121 ttttttcaat caaaatttag aaaaaattaa aaaaaatgat gatgtcattt atacaggatt
     3181 aaatgcaggt ttgattgcta gaaattgtgg tgattttaat aaaagtaatg tattttttga
     3241 tgctgtagaa gaatcttata aatatgatgt ggatttagaa aatgtaagcc ctaaagcagc
     3301 taaatttatt ggtacaacct tgcttaatga taatatagta gattatgatg gttctttata
     3361 tgaaagaatt atggttaata tatataaagc tctaaactat atggaagaag atgattatga
     3421 aaatgcaaga gttgagttta atcgtgcttt aatgcgtcaa gataaggcaa aagaatattt
     3481 tgctaaagaa attgaaaaaa atcgtgctga tttagataag gcaaaagaag ataaaaatta
     3541 tgataaaaat atgaatgaaa attcaaaagt tatagaagcg caatatgata acttatttaa
     3601 agaatttgat acaacaaaaa atttcataaa tccttatgcg acttatcttg cttcaatatt
     3661 tttctttatg gataaagatt atagaaaagc tgcagattta tttagagaag tatctattat
     3721 ttatccaaaa aacaaaacta tcaaaaaaga ggctaaaatt tttaaagaat atgccacaaa
     3781 aataaaagtt aaaaaagcta aaaaatatgt ttttgtagtt tatgaaaatg gatttggtgt
     3841 agttaaggat gaatttgctt taaccttacc ttttatagtg gataaaaaaa ttattagcac
     3901 aaatattgct ttacaaacct taaaaaaaag ggaagcttct tttgcaaatt taaatataaa
     3961 tggtcaaaat acaaatgatt ttgtagattt agacaatatt gtcgctactg aatttaaaat
     4021 aaatatgcct gcaatgattg ctaaagcctt agctcaaact ataattaaaa ccactttaaa
     4081 tgtagctgtt gcaaataatg actctacagg tggatggcta agtcttgcaa cagcagtagc
     4141 aactgctgca accaataaag ctgatgtgcg ttcttggaga ggtttaccaa aaagtattgc
     4201 catagcaaca atagaaaacg acggaaattt agaaatcaaa gatccacaag gcaatatttt
     4261 gtttcaaaaa tcattggata aaaataaaaa tgctcttgtg atagtgcgtt cttttgctcc
     4321 gtatttaccc gcaagtgttg ctatcatgga aaaataaggc taaaagatga aaaaaaatat
     4381 tttatttatt ttaatgtttt tacttagtgc ttgtgcacca agttatcaaa taaattcaaa
     4441 tcaaaatact gtaattttag gttcaaattt accaaaaagt ttagtaaaac aatttcaaaa
     4501 gcgtataaat agcaatggtt atttagaatt tgaagtgatt ttgcgcagta cttttgctaa
     4561 agatgtaatt tataaagtag attggttaga taaagatggt tttgtgctaa gagatgtttt
     4621 aaatgaggac tatcaagccc ttagaattcc agcaggacaa gaggtaattc ttcgtaaact
     4681 tgtatctgat acaagagcga aggagtttag attagaaatt aaagcaaaaa attaatctca
     4741 ttttaggaag gataaatcat gaaaaaaaca aaaattttag gaacagctct tattggagct
     4801 ttgcttttta gtggttgtgc gcaaacagct tatacagatg gaaaggcaag tcagataaaa
     4861 aaaggcgatg ctttaacctt gggtcttgat agacaagatt ttgaaagtgc agctgaaact
     4921 atgataaata gtatgttaag cgatcctgct tttgcaaata ttaaaccagg tacaagaaag
     4981 gttattgcta ttggtagggt tgtgaatgat accccgcaaa gaatcgatac tgaaaaactc
     5041 accgcaaaaa tcacttctgc attaagaaaa tcaggtaaat ttgttctaac ttcagcagtt
     5101 gctgcaggcg gagcacttga tagcatgagt gaagatgtaa gagaattaag agataatgat
     5161 gagtttaatc aaaaaaccat agcaaaaaaa gggacattgg tatcgcctga tttttctctt
     5221 gcgggtaaaa ttagacaaga taatgtaaaa cttagcaatg gtaaaactca agtagaatac
     5281 tttttcttgt taagacttac tgatttaaca tcaggtttag tttattggga agatgaacaa
     5341 actattgata aaaccggttc tagtaaatca gttacttggt aaaataaaaa ttaatttatg
     5401 aataaaattt tttagctcaa gtgtttagct tgggcttttt ttatgatttt taaaaggata
     5461 cgaaatgaaa aaaatattat ttatcggctc tttagttatg gcaagtttac tttatgcaca
     5521 aggttcccag cctgtagaaa ttacacaaca agatataaat actcaaaatg aaatgtctga
     5581 cgcaagtact aaggatatta ccccaaaatc aattgaagat ttttttgaag aatttgcgga
     5641 taatttcggt atagaatatg gtataaccaa agatggaaaa actttttata caggaaaaag
     5701 tactgttgct gtaaatgata ctgatccaca atttgcacaa gctttacaaa atgcttacca
     5761 aaaagcaatg ttaaatttgc aaagcgaatt tataagagat gcttttggaa gaattgctac
     5821 aagcaagatt caaaattatg aagcagacaa ttctactaat gctaaggaat ttgatgaatt
     5881 gccaaaaggt gataaggttg atcaaatttt aaataaactt acacaattag ctggtgctca
     5941 gcttgataag gcattaaaag atttaggtat agatacaaat tctttaagcg aagacagaaa
     6001 aaagacttta ttaaagcaag aatttcttaa taaaactatg acaaatgcca taggttctat
     6061 gagtggactt gttcctgtgc aaactatagt tacacaaaga agaggtgagt atgatgtagg
     6121 tgttattgct gttatttcca ataaaactcg ccaattagca aaagatatgg cactagcaag
     6181 acagagtgct attaagggta aaggcaaggc aataagtgag tatctgccaa aagatacaaa
     6241 aggcttttta aatgaatatg gaattcgctt agtttatgat gaaaatggtg cacctattat
     6301 tttaagttat ggaaactggg gttatgtagc agatcctagt aatgctaaaa aaacaaatat
     6361 tttagaagat agagccaaag aaacagcact tactatggct gatgctgcta ttatagagtt
     6421 tattaataca aatttaagtc ttaaagatga aagaacaact ggtgatactt acgaggaaat
     6481 catcaaacaa agtattaatg ttaatgatag ttccactcaa gaacaaactc aaaacgtaac
     6541 aaatattatt gataaagtaa atagtaaaat aaaagcaagc gcaagcggta aaattcgtgg
     6601 tattcgtact cttaaaaaat ggagctatac aagtgaaaat ggtattgaac atgtaggagc
     6661 tgtgagattt tattcttatg aaaatttaac taacacaaat gaggctttaa attcaaagtc
     6721 aaatgcaaca aaaaatgaag ctaaaaaatc ttctagcata caaagaagtt ctaatgttgt
     6781 aaatagcatg gatgattttt aaaggtaaaa gatgaaaata attaaaattc tttttttagg
     6841 cttattttta agcctaagtc ttaatgctaa agttataacc acaacttcaa caaaatcaag
     6901 cacaggtgaa ggcacaggct tgaccaggga agatgcgata aacaatgcca ttatagaggc
     6961 tataggaaaa atgagcggag taagcatcaa ttctcttaag aaatctaaca ctagcgtttc
     7021 aactgataat tcaggttcaa acatacaaga taattacagc gagcaaattt caaaagccac
     7081 caaaggtaga gccgatactt atgaaatcaa tagtgttgaa caagatacaa atggtaaata
     7141 tacagtcaat gtaacgattt ttaaaaccac aacaacaaaa aagtatcaag ctccaggttt
     7201 aagtgcagat aatagaagaa gtattactgt ttttgattct actccagatg ctgcaaaaag
     7261 aggcataggc tcagctttac aacaaaaaat catttctgat ttattgcaaa gtcgtaaatt
     7321 taatgtttta gaccgtgatt ttagtggcta ttatgaaatg gaaaaagctt taatcaaaag
     7381 tggtgacgca gctagtgatg aagtttataa acttaaaaat gtgttagcaa ctgattatat
     7441 tttattgttt tctatttcag gacttgaagg taaacaaaaa acaagcaatt taacaggaaa
     7501 aagcaaaact gaaattgaag ttatcgtaga ttatcgtgtg cttttatttg ctacaagaca
     7561 aattaaattt tctaatactt taagtatgaa agtcaatctt aaagacaata gtcttagcgc
     7621 caatgaagct gcactcaaac aaattgcaaa tcgtattgca ggagatattt taaatgcaat
     7681 ttatcctttg aaagttgcaa gcgttgaaaa caatgaagta gtattttctc aaagcttaaa
     7741 tcaaggtgat gtttatgaat gttttgctct tgggaaggtt ataaaagata cttatacaaa
     7801 agaaaataca ggaagagtag aaagcaaaac aggaagtatt gaaatcactc gcacaagccc
     7861 taaactttct tatgcaaaaa tcacagaagg tagtgtaaaa gtaggcgata tttgtagacc
     7921 tttaatcggt agcaatagtg gaaatggcta cactataggt cgtgatgcaa attatcaaac
     7981 ccaagaaggt ggcggagtaa atctaggctt ttaaattttt agagtttgat ttttctcaaa
     8041 ctctaaatcc tttcttaaat tcatcaaaaa ttaaagaaaa attttgtaaa atcgaaattt
     8101 tattaaacca ctaaagcttt taaatccgtt attgcggtgc tttatggtac taccaattta
     8161 taaggaaaag caatgtatgc tattatcaaa cacagcggaa agcaatacaa agtaagtgtt
     8221 ggcaatgagc taaaactaga tcactttgaa gctgaaagca aagcaaatat tgaagtaagc
     8281 gaagttcttg ctatcaatga taaagaatta aaggtaggtg cacctttcgt agcaggtgca
     8341 aaagttgttt tggaagtgat caatcacgga aaagataaaa aagttgtgat ttacaaaaaa
     8401 agacgcagaa aagattctaa actcaaacgc ggttttagaa gacaatttac tcgcgttgta
     8461 gtaaaagata tcaaagctta aggagtaaag aatggcacac aagaaaggtc aaggttcaac
     8521 tcaaaataac cgcgattcca taggtcgtcg tttaggtgtt aaaaaatttg gtggcgagtt
     8581 tgttagagct ggaaatatca tcatccgcca aagaggaact gcaactcatg caggtaacaa
     8641 tgtaggcatg ggaaaagatc atactatctt tgctctaatt gatggttttg taaaattcga
     8701 aagaaaagac aaagatagaa aaaaagtttc tgtatatcct gcataagttt ttaggacgct
     8761 ttttagcgtc ttgaaaactt taaatttata aatttaactt cttttattta ctcaaattta
     8821 gctttataaa tttaaagtca aaggcaattt aaatgtttat tgatagtgtt aaaattactt
     8881 tagcttcagg cgatggtggc aaaggtgctg taagttttcg ccgtgaaaaa catgttccac
     8941 ttggtggccc tgatggagga gatggtggaa atggtggtga tattattttc gtatgtgata
     9001 ataataccca cactcttgta aatttcaaag gcaaaagaga attacgcgcg caaaatggtg
     9061 ctggtggaat gggacgcaat aaaaatggca aaaagggtga aaatttagaa cttatagtgc
     9121 ccgaaggaac gcaagttatc gatgtacaaa ccaatgaaat tttacttgat cttaccaaag
     9181 aaggacaaag agagcttttt ttaaaaggtg gaaaaggtgg acttggcaac acccatttta
     9241 aacacgccac caatcaacgc cccgattacg cacaacctgg tataaaagga gaaagtcgct
     9301 tggtcagact cgaacttaaa cttattgccg atgtagggct tgtgggcttt ccaaatgtgg
     9361 gaaaatctac tcttataagc gttgtttcaa atgcaaaacc tgaaattgca aattatgaat
     9421 ttaccaccct tactccaaaa cttggactcg tagatgtaga tgagtataat tcctttgtta
     9481 tggctgatat tccagggatt atcgaaggag caagtggggg taaaggctta ggacttgcct
     9541 ttttaaagca catagaaaga acgagctttt tacttttcgt gctagatcct atgaggcaaa
     9601 tgcctttaaa agaacaattt atagtactaa gaaaagaact tgaaaaattt tccaatgaac
     9661 tttttgggcg taaatttggc atcatgattt caaaaagtga tagtgtgaat ttaggagaag
     9721 aatttgccga gcaaattact ttaaacatta atgagttaga aaattatctc aaagaaataa
     9781 ataacccaca aagtttttta atcaaagttt caagccttga aaaaacagga cttaaagaac
     9841 ttaaattcat gcttttagaa gaaattaaaa ctttaagaaa taataaataa aaattttaac
     9901 aatctaggaa gtgttttata ttaaaaattt caaacactcc ctattttttc aaaaaataac
     9961 tagtttatat gaaattttgg ctaaaattat aaaaattttt caaggaataa gcatgaaaag
    10021 aatagttgtt aaagtgggtt ctcatgtgat tagcgaagaa aacactttaa gttttgagcg
    10081 tcttaaaaat ttagtcgcat ttttagctaa actcatggaa aaatatgaag tgattttagt
    10141 aacttcagcg gctatttcag caggacacac caaactagat atcgatagaa aaaatctcat
    10201 caataaacaa gttttagccg ctattggaca acctttttta atcagtgttt ataacgagct
    10261 tttagccaaa tttaataaac taggtggaca aattttactt acaggtaagg attttgactc
    10321 tagaaaagct accaaacacg caaaaaatgc tatcgatatg atgataaatt taggaatttt
    10381 acctattatc aatgaaaatg acgctacagc tatagaagaa attgtctttg gtgataatga
    10441 tagcttaagt gcttatgcta cgcatttttt tgatgcggat ttgcttgtga ttttaagcga
    10501 tattgatgga ttttatgata aaaatcctag tgaatttagt gatgcaaagc gtttagaaaa
    10561 aatcactcat attaaagaag aatggctaca agcaaccata aaaacaggta gtgagcacgg
    10621 aacaggtggc atagtaacca aacttaaggc agctaaattt ttacttgaac acaataaaaa
    10681 aatgttttta gcaagtggct ttgatttaag tgtggcaaag acatttttat tagaagataa
    10741 acaaataggt ggaactttgt ttgagtgatt aatttattaa attctctttt aaaatcaaat
    10801 aagctataat taaaactttt aatttcacac aaagcgaaaa aatgaaaaaa attattttta
    10861 tgggcactcc atcttacgca acttgtattt taaaagcact agtagaaaat gaaaatttta
    10921 aactcgtagc actttttact cagcctgata aagccgtagg tagaaagcaa attttaactc
    10981 caagtgatac taaggctttt ttaagtcaaa attatcctag tattcctatt tttactccaa
    11041 gttctttaaa agataaaaat attataagag agattaagga tttaaatcct gattttatcg
    11101 tggttgctgc ctatggaaaa attttaccta aagccatttt ggatttagcg ccttgtgtga
    11161 atttgcacgc ttctttactt ccaaaatacc gtggtgccag tccgatccaa agtgcaattt
    11221 taaataaaga tgaaaaaagt ggagtttgca ccatgctcat ggaagaaggg cttgacacag
    11281 gtgctatact tgaaagctta gaatgtgata taaaagataa aaattcaagt gaagtttttg
    11341 aacttttagc aaatttggcc gctaagctga tcctctctac tcttttaaat tttgataaaa
    11401 tcacccctaa aaaacaagag gaaagtctag caacgctttg tagaaaaatc aaaaaagaag
    11461 atgggcttat aaatttgcaa aatgcaagag aactttatca aaaatatcta gctttcaccc
    11521 cttggcctgg agttttcttg gaaaatggac ttaaattctt agaacttgaa cttgtggatg
    11581 aattaaaaca aaatgctaag atgggtgaaa ttttagaatt agaaaaagaa agttttttgc
    11641 ttgcttgcaa acaaggagtt ttgcgtatta aaaaacttca agaaagtgga aaaaaagctc
    11701 ttgatggtag gacttattta aatggaaaaa ggcttaaaag tgaagatagt ttgtgttgaa
    11761 agtatagact caactcatct ttttttatgc aagcaaatac gcaatggaaa gattgatgaa
    11821 aattttgcta tttatgcttt agaacaaata aatggagttg gaagtaggga aaattcttgg
    11881 cagagctcta aaggaaattt acatctttct ttctgtatta aagaagaaga cttgccaaaa
    11941 gatttacctt tagcttctgt gagtatttat tttgcttatt tacttaaaga agttttacaa
    12001 gaaaaaggtt ctaaaatttg gcttaaatgg cctaacgatt tatatttaga tgataaaaaa
    12061 gctggagggg ttataagtgc taaaatttca aattttatca taggcggtat gggtttaaat
    12121 ctgaaatttg caccccaaaa tacagcttta tgcgatatag aaatttcgct taaagattta
    12181 gtgagtgagt ttttgcaaaa agtagaaaaa aaaattttat ggaagaatat ttttagcaag
    12241 tatatgttag aattcgaaaa atcaagaaaa tttagcgtcc atcatgaagg taaagttttt
    12301 tcacttgaaa attctttttt gtatgaagat ggttcaattt tactaggcga taaaagggtg
    12361 tatagtttaa gatgagcgaa attattacaa tagcaaatca aaaaggtgga gtaggaaaga
    12421 ctacaacagc agtaaattta gccgcttctt tggctgtggc tgaaaaaaaa gtacttttga
    12481 ttgatgttga tccgcaagct aatgcgacta caggacttgg ttttaatcgt aataattatg
    12541 agtataatat ttaccatgtt tttataggaa gaaaaaagct ttcagatatt attttaaaaa
    12601 cagaattgcc acaacttcat ttagctcctt caaatatagg tcttgtaggt atagaacaag
    12661 agcttgctaa aggtgaaaat aatgagaaaa aaatgcttct taaaaatcaa attcaagaag
    12721 tgattgatga gtatgatttt attattattg attctccacc tgctcttgga agtattacta
    12781 taaatgcttt tgcagcaagc gatagtgtaa ttatccctat acagtgtgaa ttttatgcgc
    12841 ttgagggtgt agctatggtt ttaaatacaa ttaaaattat caaaaaaact attaattcta
    12901 aacttagggt tcgtggattt ttaccgacaa tgtatagctc tcaaaataat ctttctaaag
    12961 atgttgtaga tgatttgaaa caaaatttta aaaaacaact ttttactatt aatggaaacg
    13021 aagatgactt tattgtgatc cctcgcaatg taaaacttgc agaaagtcca agttttggaa
    13081 agcctataat tctttatgat attaaatcgc caggttctgt tgcttatcaa aatttggcgt
    13141 attctatatt aggataatta taatgggatt aaataaagat aggggtttaa gtagtttaat
    13201 cagtgatatg gatactgttt atagtaaaga attgggtttt gataaaaatc aaagcactat
    13261 gatagaaatt gatcaaattt cacccaatcc atttcagcca agaaagaatt ttgatcaaga
    13321 agctttagat gagcttgcta attctatcaa agaatttgga cttattcagc ctattattgt
    13381 atttaaaaaa aataataaat ttattttaat tgctggagaa cgtcgcttaa gagcagtgaa
    13441 agcattagga aaaaaagaaa ttctagcttt tattgctgat attgatgaga ataagcttag
    13501 agaattggct cttattgaaa atatacaaag agagaattta aaccctattg agcttgctaa
    13561 ttcttataag gatttaatgc aagttcataa aattactcaa gagaatttag cagaacttat
    13621 tcataagtct cgtactcaaa taacaaatac tttaagactt ctgaatttag atattagaac
    13681 tcaagagttg attgcttctg gaaaaatttc tcagggtcat gctaaagttt tggttggctt
    13741 aggtcaaaaa gatgaaaaaa tgttggttga tagcataata ggtcaaaaac ttaatgttag
    13801 agatactgaa aaaatagtta aaaaaataaa aaataatgaa agcttaccta atcaagaatt
    13861 tgaagatgaa ataaaaaaat taaaacaaat actaaatcgc tttggatttg actgcaaaaa
    13921 taaaaataat gattttgtaa ttcatttaga aaatattgat aaaattaaaa aattaatcaa
    13981 aatgcttgaa aagctttaac caaaatctta gcttttttat ggtaaaatag tccttcgaaa
    14041 attctaacca aggagaatta tgtttgaaga tatgcatcct tccataatgc ttgctactat
    14101 ggctattttt ttagctatga tagttatttt aaatagtatg ctgtataagc cgcttttaaa
    14161 atttatggat gaaagaaatg attctataaa aaatgatgag aataaagtaa aagaaaattc
    14221 tcaagaagtt ttaggtgtga atgatgaatt agaagctatt catattaaca ctagagaaga
    14281 aattcaaaaa attaaacaaa gtgctatagc tgctgctaaa gaagaggcag agcaaattct
    14341 tagaagcaag aaagaagaat tagaaagaaa aatggccagt ttttatgcag atttagccgt
    14401 tcaaaaaaaa gagttgcaag aacatttaaa catacattta cctgagctta agcaagcttt
    14461 gcaaaataac ataaagaaaa tttaagagga gagaaatgag taagttattc tttattatat
    14521 ttttgctacc tttgtatgct tttggtgcat caaatggtag tggagaatat gatattattc
    14581 caaggactat taattttcta atttttgtgg ctatattgta ttattttgtt gcaactccat
    14641 ttaaaaattt ttacaaaaac cgtattgtaa aaatttcttc taaacttgat gaaattcaaa
    14701 aaaaactttt agaaagtaaa gctaagaaat tagacacgat gaaaaaactt gaagaagcta
    14761 aggcaagtgc tgctgccgct ttaattacag caaaaaaaga agctgaaatc ttagttgaaa
    14821 atattaagaa agaaactcaa gatgagttag atttacttca aaaacatttt gaggaacaaa
    14881 aagattatga atttagaaaa atggaaaaag aattagtatc aaatacttta aatgaaattt
    14941 tttctgatcc aaatatgaca ttaaaacaga gtgaaataat agaacttatg atgaagaagg
    15001 tatcttaaat atggaaaata taattgcaag aagatatgca aaagcgatag cttcaagagc
    15061 tgatataaat gatttttatc agaatttgtg tattttaaat tctgcttttg ttttgccaaa
    15121 atttaaaaat attatagaat ctaatgagat taaaaaagaa agaaaaatgg aatttcttga
    15181 ttcttttttt gatattaaaa attctagttt tcaaaatttt ttaagacttt tgattgaaaa
    15241 ttcaagatta gaatgcattc ctcaaatagt taaagaactt gaaagacaaa aagcttttaa
    15301 agaaaatatt tttgttggta ttgtgtattc taaagaaaaa ttaagtcaag aaaatcttaa
    15361 agatcttgaa gtaaaactta acaaaaaatt tgatgcaaat attaaattaa acaataaaat
    15421 cagtcaagat gatagtgtta aaatagaatt agaagaatta ggttatgaac tttctttttc
    15481 tatgaaagct cttcaaaata agttaaacga atatatattg aaaattatct aaggagaaaa
    15541 agtaaatgaa atttaaagct gatgaaatca gttctatcat aaaagaaaga atcgaaaatt
    15601 ttgatttaaa tttagagatt gaagaaacag gaaaaattat ttcagtagct gatggtgtgg
    15661 ctaaggttta tggtcttaaa aatattatgg ccggtgaaat ggtagaattt gacaatggcg
    15721 ataaaggtat ggcattaaac cttgaagaaa gtagcgtggg tatagttata cttggaaaag
    15781 gagaaggctt aaaagaaggt acttctgtaa aacgccttaa aaaacttctt aaagttccag
    15841 taggggaagc tcttatcggt cgtgtggtga atgcacttgg tgaaccaatt gacgctaaag
    15901 gtgttatcaa tagtaatgaa tttagatttg tagaagaaaa agctaaaggt atcatggcta
    15961 gaaaaagtgt acatgaacct ttacatacag ggattaaagc tatagatgca ttggtgccaa
    16021 ttggtcgtgg ccaaagagag ctcatcatag gcgatagaca aacaggtaaa actactgtag
    16081 ctgtagatac tatcatttct caaaaaggac aaggagttgt ttgtatttat gtagccatag
    16141 gacaaaagca aagcacagtg gctcaagttg taaaaagact tgaagagcat ggagctatgg
    16201 attatactat agttgtaaat gcgggtgctt cggatccagc agcacttcaa tacctagcac
    16261 cttatacagg tgtaactatg ggtgagtttt ttagagataa tgcaaaacac gctttaattg
    16321 tttatgatga tttgagtaag catgctgtgg cttatcgtga aatgtctttg attttacgcc
    16381 gtcctccagg tcgcgaggct tatcctggtg atgttttcta tcttcactca agacttttag
    16441 aaagagctag taaattaaat gatgagttag gtgcgggttc tttaacagct ttaccaatca
    16501 tcgaaactca agcgggcgat gtttcagctt atattccaac caatgttatt tcgatcactg
    16561 atggacaaat tttcttagaa actgatttat ttaactcagg aattcgtcca gctatcaatg
    16621 tgggtctatc ggtttctcgt gtgggtggtg cggctcaaat taaagcaact aaacaagttt
    16681 caggaactct aagacttgat cttgcacaat atagagaact ccaagctttt gctcaatttg
    16741 caagtgattt ggatgaggca agtagaaaac aacttgaacg tggacaaaga atggttgaac
    16801 tcttaaaaca accaccttat tctccgctta gcgttgaaaa acaagtagtt ttaatttttg
    16861 caggaaccaa aggtttctta gatgatattg ctgtttctag aattgaggaa tttgaagatg
    16921 gaatttatcc ttttattgag gcaaaacatc cagatatttt tgagcaaatt cgctctaaaa
    16981 aagctttaga ttctgatttg gaagaaaaac tagctaaagc cattaatgag tttaaagcaa
    17041 atcatttata aggtctttta tgtctaattt aaaagaaatt aaaagaaaaa ttaaaagtgt
    17101 ttataacact caaaagacta caaatgctat gaagctagtt tctactgcta agttaaaaaa
    17161 agcagaagaa gcagctaaaa gatcaaaaat ttatgcacaa aaaatcgatg aaattttgag
    17221 tgaaatttca tttcagatca ataaaattgt tcacaatgaa gatgatgtgc gtttatcttt
    17281 gtttcataaa aaagaacaaa ttaaaaccgt agatttaata tttatcactg cagataaagg
    17341 tttgtgcggt ggttttaata ttaagacttt aaaaacagta agtgaaatgc taaaagaata
    17401 tgaagcaaaa aatattaata ttcgtcttag agctataggt aaaactggga ttgaatattt
    17461 taattttcaa aaaatagaat tgttagagaa atatttccat cttagttcta gtcctgacta
    17521 tgagaaagca tgtgaagtaa ttcatgctgc tgtagatgat tttttaaatg gaaatacaga
    17581 tgaagtgatt ttagttcata atggttataa aaatatgatt acccaagaac ttaaaattaa
    17641 tcatcttatt ccagttgaac caaagagtat tgaacagact cataattctc ttttagagct
    17701 tgaaccagaa ggaactgagc ttttagaaga tttaataaaa acatattttg agtataatat
    17761 gtattatgcg ttaattgatt ctttggcggc agagcatagt gcaagaatgc aagctatgga
    17821 taatgcaact aataacgcaa aggcaagagt gaaacaactg aatttagctt ataacaaagc
    17881 aagacaagaa tctattacca ctgagcttat agaaattatc agtggtgttg aatcaatgaa
    17941 atagtaaatt ttaaggagaa gataaataat gcaaggattt atttcacagg tattaggtcc
    18001 ggttgttgat gtagatttta acgactattt acctcaaatt aatgaagcaa ttgttgtaaa
    18061 ttttgaaagc gaaggaaaaa aacataaact tgttttagaa gtagcagctc atttaggaga
    18121 taatagagtt agaactattg ctatggatat gacagatggt ttggtaaggg gcttaaaagc
    18181 tgaggcttta ggtgctccta ttagtgttcc tgttggtgag aaagttttag gaagaatttt
    18241 caatgttact ggagatttga tcgatgaagg tgaagaaatt tcttttgata aaaaatgggc
    18301 aattcataga gatccaccag cttttgaaga tcaaagcaca aaaagtgaga tttttgaaac
    18361 agggattaaa gttgtggatt tacttgctcc ttatgcaaaa ggtggtaaag taggtctttt
    18421 tggtggtgca ggtgttggta aaactgttat tattatggag cttattcaca atgttgcatt
    18481 taagcatagc ggctattctg tatttgcagg tgtgggtgag agaactcgtg aaggaaatga
    18541 cctttataat gaaatgaaag aaagtaatgt tttagacaaa gttgctctat gttatggaca
    18601 aatgaatgaa ccaccaggag caagaaatcg tattgcttta acaggtttaa caatggctga
    18661 atattttaga gatgagatgg gacttgatgt gcttatgttt attgataata tctttagatt
    18721 ttcacaatca ggttctgaaa tgtcagcact tttaggaaga attccatcag ctgtgggtta
    18781 tcaaccaacc ttagcaagtg aaatgggtaa attccaagaa agaattactt caactaaaaa
    18841 aggctcaatt acttcagttc aagctgttta cgttccagct gatgacttaa ccgacccagc
    18901 tccagcaact gtttttgctc acttagatgc tacaacggtt ttaaatagag ctattgctga
    18961 aaagggtatt tatcctgcag ttgacccact tgactcaact tcaagaatgc ttgacccaaa
    19021 tatcattgga gaagaacatt ataaagttgc tcgtggtgtt caatcagtgc ttcaaaaata
    19081 caaagattta caagatatca tcgccatttt aggtatggat gagcttagcg aagaggataa
    19141 acttgtagtt gaaagagcaa gaaagattga aaaattctta tcacaaccat ttttcgttgc
    19201 agaagttttc acaggtagcc caggaaaata tataagcctt gaagatacaa tagcaggatt
    19261 taagggaatt ttagaaggta aatatgatca tttaccagaa aatgctttct atatggttgg
    19321 aaatatagat gaagctattg caaaagcgga taaattaaaa ggttaattta tgaacgattt
    19381 gattaatttc gagatagtta cacctttggg tgtaatctat caaggagaag taaaatctgt
    19441 tactttaccg ggtagtgaag gagaatttgg cgtgcttaaa ggacatgctg ctttggtttc
    19501 ttctttaaaa tctggagtaa ttgatattga aaaagctgat ttaaaccatg aattaattgc
    19561 tattgatgct ggacatgcaa aggtagatga agataagatt tgcgtgttag caaagggtgc
    19621 ggtttgggtt tgtggaagtg atgaaagtga gattgaaaaa aatcttgctc aagcaaaaga
    19681 tttgattaaa tctatgagtt ctgataatgc agctttagca gcaacttttt caaaacttga
    19741 taatgcaagg atgcattaat gaattttgaa gctatatttc attttttcaa tagttcaagt
    19801 attattactt atatagtttt attatggctt tctttatatt ttattttagc atttagtatt
    19861 ttgtttgcta gattgactta tttggctaca tggagaaata aagaaaaaga aagtttagaa
    19921 actttgctct tgggtgagaa ggatttaagt cgtactgatt cgattttaag aaaatgcaat
    19981 gatacaactt caaatcattt agaaatctat aaaaatttag caagtcgccg cgcttctgct
    20041 ggacttactt ggcttagtat tattgcttca acttcacctt ttataggtct ttttgggaca
    20101 gttatttcta tacttgaaac ttttggtggg cttggaactc aaaattcttt aagtattata
    20161 gctcctaaaa tcagtgaggc tttagttgct acaggttgtg gtattttagt agcaattcct
    20221 gcttatacat ttcatctcat cattaaaaga aaagctttcg aacttttaag cattattgat
    20281 agcgagatta aagttataag ttcgagtaaa taaggttaaa aatgccattt gatgatgaaa
    20341 aacctgagct taatatcaca cctttagtag atattatgct tgtattgctt gcgattttaa
    20401 tggtaacagc tccaagcatt acttatgaag aaaaaattaa tcttccacaa ggtagtcaaa
    20461 aaaatactag cgctccaact gttaagagtt taattattag tattaatgca aaaaaagaaa
    20521 tttttttaaa tcaagaaaaa tacgatttta taagttttgc tgacaatctt gctcaaagaa
    20581 aagcacaatt taataccgaa gatccggttt ttatacgcgc tgataaaaac ttaaaatatg
    20641 acgatgttat ttcagtctta agaagtgtaa aaaatttagg atttaataaa gttgctttac
    20701 agactgaata atcatgaaaa attatggttt gagtaattta aattcgtttt tacttgcttt
    20761 agcaatatat attagtatag taattcttgt tttttttaga cttgtaagcg aggttgaacc
    20821 tgctatacaa tatactgata tcaaagatag ttttgtagat attgaacttg ctgaaccatc
    20881 aaaacaagtt attactcaaa gcaacactcc taaagaaata caaaaaccaa cagagcaagt
    20941 tgatatagaa aagctttttg ctcagactac aaataaaaca gttaaaacag aagatattga
    21001 ccaaaaggcg agtaatttta atgagctttt tggaaatatc aaagaaatac aagaagaaaa
    21061 gactacaaaa attcaatcaa gtgctaaatc aggagcttct agtgccccaa aacctcaagc
    21121 ttctgaactt gtaaaacaac ttaatgatag cttgcttcaa gaagaaagtt caacacaagg
    21181 tgaaagtaca aaggcacaaa aaattggaat ttatgatgaa tttttaggga aagtcgtgcg
    21241 tattatcact caaagatgga ctcagtatta tccaaatagt gaaaaaattt ctgttaaggt
    21301 aaaaattttt attgatgaaa atggaaaatt tggctatact tcagttgaaa aaagcgggaa
    21361 tcctttatat gatgctaaag tggctgaatt tttagaaagt caaaaaggta aatttattac
    21421 ttatcctccg caaaataaaa atataagcat taccatgaat ttaagagatg aagcaaaagt
    21481 taaaaatgat taggagaaca aaatgaaaaa aattgtagca atttttttag tctttttagg
    21541 aagtctttgg gcagaagatc cggttattga tgttgttaat tctggtgtgg ttttaccaaa
    21601 gattatcgtt aaagataatt caaatttaag tgatgagaat ttaaagaaaa gcttttataa
    21661 tatcattgtg aacgatttga aagtaagttc aaactttgaa gttgttgcta atgcaactga
    21721 aacaagtaat tatacttttg aatacgcttt aaataaaaat ggtaacactt tgagtttaaa
    21781 tgtaaaaata aaagctggcg gttctgataa gtcagagcaa acttatactt taaatggttt
    21841 agagcaatat ccatttttgg cacataaaag cgtcaaagct tctgtaaatg cgttaggact
    21901 tgcacctgtt gattggatgg atcataaaat tttgatcgcg agaaattcta gctctaaaaa
    21961 aagtcaaatt attatggctg attatacttt aacttatcaa aaagttattg ttgatggtgg
    22021 gcttaattta tttccaaaat ggggaaataa agaacaaact ctattttatt atacagctta
    22081 tgatcatgat aagccaactt tataccgtta tgatttaaat accaataaag ctagtaaaat
    22141 tttatcaagt ggcggtatgg ttgtagcaag tgatgtgaat gtagatggaa gtaaactact
    22201 tgttaccatg gctccaaaag atcagcctga tgtttattta tatgacttaa ataccaaaaa
    22261 tctaacacaa ttaactaatt attctggtat tgatgttaat ggaaatttta ttggctcaga
    22321 tgatagtaaa gtggtatttg taagcgatcg tttaggatat cctaatattt ttatgcaaga
    22381 tttaaatagc aatagtgctg aacaagttgt ttttcatggt agaaacaatt cggctgtttc
    22441 gacttataaa gattttttgg tttattcaag tcgtgaacca aatcaagcag gtgtttttaa
    22501 tatttatttg atgtcaatta atagtgatta tattcgtcaa cttacagcaa atggaaaaaa
    22561 tttatttcca agattttcta gtgatggtgg aagtatagta tttatcaaat atttaggtgc
    22621 gcaaagtgct ttgggtgtta ttcgtgtaaa tgcaaataag actttttatt ttcctcttag
    22681 ggttggaaaa attcaatcaa ttgattggta aaaatttcaa ttttaggtta aaattaatta
    22741 aaaattagat ataataataa gaatttatta actttgaaag gtcataaatg aaaaaaattc
    22801 tttttatttc aattgcagct cttgcagttg ttattagtgg ttgtagcaca aaaagcacta
    22861 gcgtaagcgg tgatagtagt gttgattcaa atcgtggttc aggtggaagt gatggttggg
    22921 atattgattc aaaaatttct caacttaatg atactttaaa taaagtatat tttgattttg
    22981 ataaattcaa cattcgtcct gatatgcaaa atgttgtaag cacaaatgct aatattttta
    23041 acactgaagt aagcggtgta agtattactg ttgaaggaaa ctgcgatgag tggggaactg
    23101 atgaatataa ccaagctcta ggtttaaaaa gagcaaaagc tgtaaaagaa gctttaatcg
    23161 ctaaaggtgt aaatgctgat agaattgctg ttaaaagcta tggagaaaca aatcctgtgt
    23221 gcactgaaaa aactaaagct tgcgatgcgc aaaatagacg tgctgaattt aaattatcaa
    23281 gataattaat gaaaaaaata ttcacagtag ctcttcttgg agctacttta ctttatgcag
    23341 aaaactcagc ttttggtgca ggagatataa caagcaattc ttcttatggt ttaacttcaa
    23401 atgaaaaatt atttaaagaa aagttagata atttaaataa tgaaaatata caaacaaatg
    23461 ctagaattaa tgaaattaac gaaagaatcg agggtttaca aagcacttta gaaggtataa
    23521 attctcaata tgccaaatca aattctagat taagtcaagt tgaagagaat aatcaaaata
    23581 ttgaaaataa ttttactagt gaaattcaaa aattaaaggc ttatgttgaa gaaagtagaa
    23641 aaattcaaga agctaataat aagcaagtaa aaaaagtttt agccgaactt agttctttag
    23701 tagacgctat taatgcaaat tatgtttcta aaaacgaatt aaatgatgca aatttaagcg
    23761 ttaaaactat tacacctagt gttgttgttt caactacaga ttcaaatagt accattgaaa
    23821 acaataatac tcaaaatacc caagatgata aagcaaaaca aattgatgaa tcttggaaaa
    23881 agaaaaaaaa taatgaaatt ttagaattag cgataaaaga tgttgataaa aatgcttttg
    23941 aagattccaa agcaaaatta aattttctca taacaaagca gtataaacct gcaagagcaa
    24001 atttttggtt aggggagatc gagtataaac aaaaaaatta taacaatgct attgtttatt
    24061 ataaaaaaag ttcttctttg agtacaaaag gagattattt cccaaaactt ttatatcata
    24121 ctgccatttc attggataaa acaggtgata caaaaacagc aaatggtttt tataaagctt
    24181 taaaaactaa ttatccaaat tcacccgaag caaaagcttc acctaataga aaataaatta
    24241 aggagataaa atggctatag aaaaaaatag tgtagtttca atgttttatg agttaaaaga
    24301 tgcaaataca aatgaagttt tagaatcaaa tttatattct caacctattt cttttatttt
    24361 aggcaaaggt cagattttag aaagcttaga agaagaagtg atgaagcttg attgccctag
    24421 caatgctgat gtggtaatta aaaaagaaaa aggtttaggc gaatacgatg aaaatgccgt
    24481 tcaaacttta ccaaaagagc aatttgcagg tattgattta aaagtaggta tggagctttt
    24541 tggcgaaggt gaaaatggcg aaaccgttcg tgtaactgta aaagaaattg gtgaaaatga
    24601 tgtcacaatt gattataatc atccttatgc gggtcgtgat ttgctttttt ctttaaatat
    24661 cgtagatgct agagctgcga gtgaagatga aattcttaca ggtattatcg caggaagtca
    24721 tagttgtggt tgtggaagcg gacatggaca cgatcatcat cacggacatg gacatggcgg
    24781 cggcggttgc tgtggtggtg gcggttgtgg ttgtcattaa tgaatgctgc gtttatattt
    24841 ccaggtcaag gctctcaaag tcttggcatg ggaaaagatt tttatgaaaa ctctataaaa
    24901 gccaaagaac tccttcaaaa cgcaagtgat ttttgtaaga ttgattttaa acatttgctt
    24961 tttgaagaaa acgaaaaact caatcaaagt gaatttactc aacccgccat cgttttaaat
    25021 tccttaatgg cttatagtgt tttacttgaa aaaaaacctg atttaagttc gaaatttgct
    25081 ttagggcact ctttgggaga attttcagcc ttagctgtca atggtgcttt tgatttttta
    25141 gaggctcttt ctttggtcaa taaaagaggg cttttcatgc aagaagattg tgcaaaagtt
    25201 gaagcaggta tgatggtggt tttggggctt gatgatgaaa aggttgaaga gctttgtcaa
    25261 aaagcacaaa aagaaaacaa gcaaattttc gctgcaaatt ataactgcga tggacaaatc
    25321 gttgtagcag gtttaaaacc tgatttagca agttatgaaa gtgtatttaa agaagcagga
    25381 gctaaaagag ctatgctttt aaatatgagc gtggcaagtc attgtcctct tttggaaaat
    25441 gcttcagcta agctttgtgt ggagcttgaa aaggtgttaa aaccaaattt taaagccgta
    25501 gtttctaatg caaatgccaa aatttataca agcaaagaag aagcccttga gcttttaaaa
    25561 gcacaactta tctctcctgt gctttataaa caaagcatta aggcatgtga aaatgaagta
    25621 gattatttca tagaatttgg cgcaagtgtg cttaagggtt tgaataaaaa aatcacttca
    25681 aaagaaactt atgctttaac aaatatgaat gatattgatg aatttttaaa ggttgtatga
    25741 tgaaaatagc aattttagga gccatgagtg aagaaatcac tcctttactt gaaacactta
    25801 aagattatac gaaaatagaa cacgctaaca atacttatta ttttgcaaag tataaaaacc
    25861 atgaacttgt tttagcgtat tctaaaattg gcaaggtaaa ttctactctt agtgctagtg
    25921 tgatgataga aaaatttggc gcacaagctt tgctttttac aggagttgca ggtgctttta
    25981 atcctgaact tgaaattggc gatttgcttt atgcaacaaa attagcccaa tacgatcttg
    26041 atattactgc ttttggacat cctttaggtt ttgttccagg taatgaaatt tttatcaaaa
    26101 ccgatgagaa attaaacaat cttgctttag aagttgctaa ggaattaaat atcaaactgc
    26161 gtgcaggtat tattgcaacg ggtgatgagt ttatttgcga tgaagcaaaa aaagcaaaaa
    26221 ttagagaaat tttcaatgcg gatgcttgtg aaatggaagg cgcaagtgtg gctttggttt
    26281 gtgatgcttt aaaggtgcct tgttttatct taagagctat gagtgataaa gcaggggaaa
    26341 aggctgaatt tgattttgat gagtttgtga tcaattcagc taaaatttca gccaattttg
    26401 tgcttaaaat gtgcgagaaa ttatgataaa tcttagcaaa aaactcatac gccaagttgc
    26461 acaagctaat gctaaatttg gacttattaa agatggagat agggttcttt tagggcttag
    26521 cggcgggaaa gattctttgg ctttagccca tcttttaaat cgtatgcaag ctcacgctcc
    26581 ttttaaattt gaatttgaag cggtaacttt gagttatggt atgggcgagg attattcagg
    26641 gcttcatgca cattgtgaag aacacggcat taaacatagc gtgcttgatt caaatattta
    26701 tgaagtttca ggcgatacca taagagaaaa ttcaagtttt tgtagttatt tttcgagaat
    26761 gcgtcgtgga gctttatata cttacgctct tgaaaaaggt tttaacaagc ttgctatagc
    26821 ccatcattta gatgatgcag cagaaagctt ttttatgaat tttattcata atggagcttt
    26881 aagaacctta gtgcctattt atcaaagcaa acgcggtata actgtgatac gccctttgat
    26941 ttttgtgcgt gaaagacagc ttagagataa tgctacgcaa aatgaactta gcgtgatagg
    27001 aaatgaattt tgtcctggta tgaaactcag tgaaaaaaat gtaaaatttc cacacgctag
    27061 agaagaagct aaacagcttt tagcaaattt agaaaaagat catcctaagc tttttacaag
    27121 tttaaaaacc gcttttgcca atttacacac ggagagtttt tggcttcaaa aggcataaaa
    27181 gcatgaaaaa agcttttgtt ttagtggatt atcaaaatga ttttattgat ggaagtttag
    27241 gttttgataa ggctttaaag atcaaagaaa atattcttaa agccttaaat caaatcgatt
    27301 ttaataacac gcatttgctt ttaacctatg atacgcatga tgagcattat ctacaaagta
    27361 aagaaggttt aaatttacct gtaaaacatt gcattaaaga gagtttgggt tggcaaatgc
    27421 caaaggaatt tgaacctttt ttacaaaaag ctcataaaat tttttataaa aatacttttg
    27481 gtagcttaga attagctaat ttcatacaaa aaagtgatta tgaagaactt cattttgcag
    27541 ggcttgtttc tcatatttgt gtgttttgta atatcatttt agcttttggt gctaagccta
    27601 atgcaaggat aattttacac caaaatttaa gtgcaagttt tgataaaaat ttagaaaaat
    27661 ctgcttttga tctacttaga gcttatggta ttgaaattgt ttaatgcaag gctttatact
    27721 ccatactcaa aaagttaaag atgaggattt gatcgtttat attttaagtc ctaaaatgct
    27781 tattaaggtt tatcgttttt atggacttag acattctagt attttaagcg gttataaaat
    27841 cgattttgct ttagaagaaa atcctagttt tttgccaaga cttaaagatg tgttgcattt
    27901 aggattttta tggatcatgc aaagggataa aatgcttatt tggcaagaat ttatccgtct
    27961 tttatataga cacttaaaag atgtagaaga gcttgatagt ttttattttg atttacttca
    28021 agagtgtgtg aaaagatttg aaaaacaaaa tccaaagcgt gtcattgtcg atgcttattt
    28081 aaaaattttg gaatttgaag gaagattgca taaagatttt ttttgttttg cctgtgatga
    28141 gaaaattcaa aattccatta cactgttaag ggctttttta ccttcgcatt ctcaatgcgc
    28201 tttaggattt gagtttgaag agaaaaaact aaaacaattt tatagcagta aaaattgtgc
    28261 gatttttgat gatgaagaaa tagaaaattt ataccatttg attaaggaag gtttatgata
    28321 ttaagtgatg aaaaatgtga ttttttagaa cctatagcaa gttttttaag ctctaagcat
    28381 gtggagcttg tttttgtaga aagtaaggaa atgcaagaaa ttaacttaga gcaaagaaag
    28441 caagataaaa ccactgacgt gctttctttt ccgcttgaaa atatcgatga gagtttgcct
    28501 ttgggttctg ttgtgatcaa tgtggatttg gcaaaagaaa aggctaaaga attagggcat
    28561 agctatgaag aagaaataag cttgcttttt atacatgcta tgcttcattt actaggcttt
    28621 gatcatgaaa atgataatgg agaaatgaga gaaaaagaga aagaacttat agagcatttt
    28681 aatttgccca aaagtttgat tgtaaggact ttagaaggtt gaactaaaat aataatttcg
    28741 gcgtccaaat catagaaatt ggctctaaaa agaaggatta gaataattaa gataaaaagt
    28801 ttagctctct aatcaaaaat aataaatata gatttaaata aaattaaaat
//
LOCUS       DAPIWV010000006        26253 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.006, whole genome shotgun sequence.
ACCESSION   DAPIWV010000006 DAPIWV010000000
VERSION     DAPIWV010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26253
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.006"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            77..1078
                     /gene="mltG"
                     /locus_tag="RJ272_000171"
     CDS             77..1078
                     /gene="mltG"
                     /locus_tag="RJ272_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDV7381307.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1159..1590
                     /gene="flgB"
                     /locus_tag="RJ272_000172"
     CDS             1159..1590
                     /gene="flgB"
                     /locus_tag="RJ272_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HDV7381308.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPGKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1600..2094
                     /gene="flgC"
                     /locus_tag="RJ272_000173"
     CDS             1600..2094
                     /gene="flgC"
                     /locus_tag="RJ272_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HDV7381309.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2101..2397
                     /gene="fliE"
                     /locus_tag="RJ272_000174"
     CDS             2101..2397
                     /gene="fliE"
                     /locus_tag="RJ272_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HDV7381310.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2404..4194
                     /locus_tag="RJ272_000175"
     CDS             2404..4194
                     /locus_tag="RJ272_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7381311.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNN"
     gene            complement(4209..5840)
                     /locus_tag="RJ272_000176"
     CDS             complement(4209..5840)
                     /locus_tag="RJ272_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HDV7381312.1"
                     /translation="MTNLGIGFKVFSGDLLEKILAKSTDTKIKSILFGTLSTLIMQSS
                     TLVSIITISFLSAGLISLGAGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIG
                     VLFFFQKDSVLKGLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVF
                     LGLGALLTGVIQSSTVIMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTN
                     IEGKKLAFASCIFNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLI
                     GVVLFSFFTPQIVLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIEALRKESEHLYN
                     NTYAIVAHAIGFSRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFS
                     TKAQVYINDETKNHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKI
                     RSNLGELLRSIEELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKIT
                     TAEGISILNDTTFAAKIAEELIGAVEVIFSKDISN"
     gene            complement(5983..6417)
                     /locus_tag="RJ272_000177"
     CDS             complement(5983..6417)
                     /locus_tag="RJ272_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381313.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(6417..6734)
                     /locus_tag="RJ272_000178"
     CDS             complement(6417..6734)
                     /locus_tag="RJ272_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDV7381314.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILSNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGY"
     gene            complement(6731..8557)
                     /gene="htpG"
                     /locus_tag="RJ272_000179"
     CDS             complement(6731..8557)
                     /gene="htpG"
                     /locus_tag="RJ272_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDV7381315.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8630..8998)
                     /gene="crcB"
                     /locus_tag="RJ272_000180"
     CDS             complement(8630..8998)
                     /gene="crcB"
                     /locus_tag="RJ272_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDV7381316.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYFNFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(8992..9684)
                     /locus_tag="RJ272_000181"
     CDS             complement(8992..9684)
                     /locus_tag="RJ272_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HDV7381317.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERVKLC"
     gene            complement(9665..10861)
                     /locus_tag="RJ272_000182"
     CDS             complement(9665..10861)
                     /locus_tag="RJ272_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDV7381318.1"
                     /translation="MKILLTLIFSIVVLFARGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKNSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10858..11505)
                     /gene="purQ"
                     /locus_tag="RJ272_000183"
     CDS             complement(10858..11505)
                     /gene="purQ"
                     /locus_tag="RJ272_000183"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HDV7381319.1"
                     /translation="MKVAIIRFPGTNCEIDTAYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIISLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLS"
     gene            complement(11507..11752)
                     /gene="purS"
                     /locus_tag="RJ272_000184"
     CDS             complement(11507..11752)
                     /gene="purS"
                     /locus_tag="RJ272_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HDV7381320.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELVIEKE"
     gene            complement(11761..12471)
                     /locus_tag="RJ272_000185"
     CDS             complement(11761..12471)
                     /locus_tag="RJ272_000185"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDV7381321.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12473..13807)
                     /locus_tag="RJ272_000186"
     CDS             complement(12473..13807)
                     /locus_tag="RJ272_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDV7381322.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13934..14224
                     /locus_tag="RJ272_000187"
     CDS             13934..14224
                     /locus_tag="RJ272_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HDV7381323.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKIVLKEHLAHCMVHAIEENDIQSIEELNKAIDMFMK"
     gene            14336..16909
                     /locus_tag="RJ272_000188"
     CDS             14336..16909
                     /locus_tag="RJ272_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7381324.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16937..18868)
                     /locus_tag="RJ272_000189"
     CDS             complement(16937..18868)
                     /locus_tag="RJ272_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDV7381325.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDIAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKVNMKFNESEIIF"
     gene            complement(18865..19416)
                     /gene="maf"
                     /locus_tag="RJ272_000190"
     CDS             complement(18865..19416)
                     /gene="maf"
                     /locus_tag="RJ272_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HDV7381326.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENVLRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19416..21944)
                     /gene="alaS"
                     /locus_tag="RJ272_000191"
     CDS             complement(19416..21944)
                     /gene="alaS"
                     /locus_tag="RJ272_000191"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDV7381327.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDVGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            22059..23132
                     /locus_tag="RJ272_000192"
     CDS             22059..23132
                     /locus_tag="RJ272_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HDV7381328.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRTLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIVVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23137..24003
                     /locus_tag="RJ272_000193"
     CDS             23137..24003
                     /locus_tag="RJ272_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDV7381329.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            24000..24911
                     /locus_tag="RJ272_000194"
     CDS             24000..24911
                     /locus_tag="RJ272_000194"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDV7381330.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLPDFN"
     gene            complement(24971..26206)
                     /locus_tag="RJ272_000195"
     CDS             complement(24971..26206)
                     /locus_tag="RJ272_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HDV7381331.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDVAINAFIVSIISAACGFLSWVVLEWLIYKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
BASE COUNT         9335 a         4395 c         3662 g         8861 t
ORIGIN      
        1 tgctcgtaca attaattttt tatctaattt aatatataat tgttccaatt ttaaaaaatc
       61 aaattggata ctagagatga caattccatt tttaagcact ataaacaaag ctaatataag
      121 cacaacaaaa aatacaacaa tatataaaat tttctttttc atacgcaact tctttttgat
      181 atttattttg gggatttttt attatctaac tcagccttta aaaagcaatt ctgtggtatt
      241 tattccccaa ggttcaattt ctcaaattat aacatattta aagcaaaata aatatcagat
      301 gagtaatatt gataaatata ttttattttt tttaggacac cctcaatcag gctggatcaa
      361 cataggtaca aaagatttaa atagagctga atttctacat aaactcacta ttgctaaagc
      421 agcacttcaa accattactc ttattccagg agaaacaagc gtaatctttc tagaacaagc
      481 agccaaacaa cttggacttg ataaagatat acttttaaaa gaatttcaag ctcaagctcc
      541 ttatgatgaa ggagtttttt taccagaaac ttataaaatc ccgaaaggca ttacagaaaa
      601 tctactcatt caaatgcttt taaaccatgc tgaaatttcc aataaaaaaa cttctgagaa
      661 aatttttggt gattataatc caaaaaaatg gcaccaatat atcatcatcg cttctgtaat
      721 acaaaaagaa gctgctaatg acaatgaaat gcctatagtt gcaagcgtaa tttacaatcg
      781 acttaaaaaa ggtatgaaac ttcaaatgga tggaacttta aattatggaa tttattccca
      841 tgtaaaagtt accccacaaa gaataagaca agataatagc tcttataata cctataaatt
      901 tacaggattg cctaaagaag cggtttgtaa tgtttcttta gctgctattc gtgcagctat
      961 ttttccttta aagacagatt atttatattt tgtgcgtgat aaaaatactg gagttcatat
     1021 ttttagcaca aatatagatg atcacaataa agccataaat ttacaaaaag gaaaataatt
     1081 tttgatattt ttatacaaaa tagttaaatt ggaacagtat ttgcttgtta atattaaaaa
     1141 ttataaaaag gataaaaaat gattaaccca tttaaatcaa aagaactagt cactggtgct
     1201 ttagcgggta gaaatctaag aaatcaactc atcaatgcca atcttgcaaa tgttgatact
     1261 cctttttata aagcaagaga tattgaattt gaaacagctt tggtaaatcg tgcaaatgaa
     1321 attttcaaaa aaaatgacaa aaaagaatta gaattggcag taaccgaaga agggcatcaa
     1381 aaaccttgga aatttcctga tcctggtaaa tctactattt acttaagaga tggtcatttg
     1441 gcaagaaatg atgcaaatac tgttgatcta gatgtagaaa ctacagaaat gagtaaaaat
     1501 acagttatga taacagctct tgatggagtt ttaagaagac agagcaatat ctttagttct
     1561 atacttgatg caagctctaa attaagttaa aggtaaatta tggcatactt aagtgatttt
     1621 gatattagtg gttatggttt aagtgctcaa cgttttagaa tgaatgttat tagctctaat
     1681 atagctaatg caaacactac aagaacagct gaaggtgggc cttatagaag acgcgaagtg
     1741 atctttaaag caacagattt tgataagctt ttaaatgagc aaattaacaa agataataat
     1801 tttttaaaat atgaaaatcc tttaaatgat ccaagttcgc cagaagaagc taaacctgct
     1861 attcaaagtg ttgtagtgga taaagtggtc agagatgaca aagattttcg tatgaagtat
     1921 gatccaagcc atcctgatgc aaatgctgaa ggttatgtag cgtatccaaa tgtaaaccct
     1981 gttattgaaa tggcagattt gattgaagct acaagagctt atcaagccaa tgtaagtgct
     2041 tttacaagtg caaaaactat agctcaaagt gcgattgatt tattaagagg ataataaaaa
     2101 atgaacaata ttaatgattt aagattaaat aataatattt caaataccaa caaaagtcaa
     2161 aattccacag gaattggtga tgaatttgcc aagatgctta aaaatgaaat cgatgattta
     2221 aataaagcac aagaaagtgg agaagctgca atgacagaca ttgccacagg acaagtaaaa
     2281 gatttacatc aagcagctat agctatcact aaagctgaaa gcagcatgaa atttatgcta
     2341 gaagtaagaa ataaagcgat cagtgcttat aaagaaatca caagaactca aatttaaacc
     2401 ctaatgcaag aatataaaaa aaatagggtt tcaaaagttg cctttgccta ctgcatggca
     2461 cttttgttta tgattatttt tatcagctct actttttttc ttacatcaaa acgtcatata
     2521 cctaacactg aaaaagatca atacgctctt gctctaagag gatcgattat aaccaaagat
     2581 aattttacta tcacaagttc taaacaaatt tatcgtgctg aaattgatct tagaagcatt
     2641 aacaaagata aatttgatct atttttaaag ctttttcaaa tttatagtgg gataagtaac
     2701 gatcaagtag cagatattaa aaaaagaatg caaaatcaaa aaaaacgctc ttataatttt
     2761 gttcttttac aaaacttaga ctccaagcaa gcaagctacc ttaaagatct tgctaaaaaa
     2821 ctttatatac aaggtttttt caaagctttt acaaataact caggaagagt tgaaacaaga
     2881 ggattaaata tcatcgaaca tgaagaagat agaatttaca tgtcaaaaga ttcttttact
     2941 cctattatcg gttatactaa aatgatatta gatccagaaa gtggaatttt aaaaaatata
     3001 ggagttaaag gtttagaaaa atactacgat gcatgtctaa gccctgttca aaatgaaaaa
     3061 attcaaggac ttaaagatat aggtggaaat attattttaa atctaaattc actacaacaa
     3121 aaaaagatca atggttgtga tttatattta aatctttctt taaaactgca aaaaagtata
     3181 gagaaagcta tagatcaaag aaatgaggat ttaaaagcca atgaaatcat cgttggggta
     3241 atggaaagta aaacaggaag aattttagct ctagcaagct caaggcgtta tgacccacaa
     3301 aatcgcggaa aggatctatc agttcttaat gcaagcgcta tagaatacgg ctatgaagca
     3361 ggttctgtta tcaaaccttt tatctttaca acagccttaa gacttggtaa aataaaaatg
     3421 gatgaagtga ttaatactta tggcggttct tacaagctag gacgtttcac catcaaagac
     3481 gatcacaaaa tggacaaaat gactatggag gaagttataa gatattcttc aaatataggc
     3541 atgatacaaa ttgctaaaag acttaacaat atagaaatcg tatcagggct taaaatattt
     3601 aaatttggcg aaaaaagtgg tattgatcta ccctatgaac aaaaaggaga aattccaaat
     3661 cctaagcgct taagagatat agaaaaatct gttttaagtt atggttatgg acttaaaaca
     3721 acctttatac aactccttgc agcttataat gttttcaaca atgatgggtt ttatatcaca
     3781 ccacgtttag ctgaaaaatt ctatcaaaat ggacgcttta caaatcttga tgatgatgta
     3841 aaaaaagaaa aaattctttc tagcgaagcc gctaaaacga tgcaaaatgt tcttataaat
     3901 gttatagaaa aaggaacagg aaaaaaggca attacacaag gtattattgc aggaggtaaa
     3961 acaggaacgg caagaatagc cgaaagacaa ggttacacct caaatcgcta caatgcatcc
     4021 ttttttggtt ttgcaaatga tttaaatcac gcctatacca taggagttct cgtaagacat
     4081 cctactaaac cttatagtta ttatgctgca caaagtgctt tgcctatgtt taaagatgtt
     4141 gttgatattt taatcaatga agaatttcta acgcctatac aagacaataa ctaaactagc
     4201 acaaacaact agtttgatat atctttagaa aatatcacct caacagcacc tataagttct
     4261 tcagcaatct tagcagcaaa agttgtatca ttaagtattg aaattccttc agctgttgtg
     4321 atttttctta ctgaaataag atgttcaaca ttgctcaagg ttaaagtatc gatttctttt
     4381 aaaatttctt ttcctttttg aagattttta ataatcaaat aaagcttttc acgatcttca
     4441 acaactctaa gctcttcgat acttcttaaa agctctccta aattcgatct aattttattg
     4501 tactctaaag ccaaaaattc attagaagaa ctagaatatt tcttaatatt tgcttggata
     4561 atttttaaat ttttagttgt ttcggctaaa tttttagctg ccatcttaaa ggtaaaaatt
     4621 ttatgattct ttgtttcatc gttaatataa acttgtgctt tagttgaaaa atcgataata
     4681 gcttcaaaaa gaacctttat cctagtttga tacaaatagt ccaaatccac atttttacta
     4741 aaccactttt tattttctaa aatttcttta aaacttttat cactttgtat atctttacga
     4801 ctaaaaccta tagcatgagc aacaattgca taggtattgt tataaagatg ctcgctttct
     4861 ttccttaaag cttcgatggc tgtgtcacta aacttaacca aactactatc aagatataaa
     4921 ggcttgtctt tattcttatc tttaggagct tttactatct tatttaaaaa aagaacaatt
     4981 tgaggagtaa agaatgaaaa aagcacaaca ccaattaaat taaacaaagt gtgaaataat
     5041 gctactttca aagctatatc ttctatgttt aatacaatgg ataaaaaatt aagaaaatgt
     5101 ataaaataag gaaaaataag cactattaaa aaagctatac caaaattaaa aatacaactt
     5161 gcaaacgcta atttctttcc ttcaatattg gtacttaaag aagctaaaac agccgttaca
     5221 actcctccaa cactagtacc taaagttgct gctaaggaat tttccaaact gatttgtcct
     5281 gcaagtaaag cagcgacaat aatagccatt ataactgtgc ttgattgtat aactcctgta
     5341 agcaaagcac ctaatcctaa aaaaacaaaa actcctttaa aaccagcaaa atcaaaacga
     5401 gaaagatcaa ttatatgttt aaaattttca aaaccacttt taatataatc cacacccaaa
     5461 aagaaaaatc ctataccaat aaaaatatta cccaaacctt ttaaaacact atctttttga
     5521 aagaaaaata atactccaat aatcaaaagt gggatagcta gcattgaaat tttaatattt
     5581 gtcaaaccaa caatcagcca agagcttgcc gtatttccta aatttgctcc aaaaataatc
     5641 cctatgcccg cacccaaaga aataagccct gcactcaaaa aagaaatcgt aataatagaa
     5701 actaaagttg aagattgcat aattaaagta cttaaagtac caaaaagtat actttttatc
     5761 tttgtatcgg ttgacttcgc taaaattttt tcaagcaaat caccactaaa aactttaaaa
     5821 cctataccta aattagtcat tccaataaag aaatattgcc actcctgcta aaagattagc
     5881 aagctcgtca taacgaatta aaataaaaat cagaactaaa gtaaaaatac ttcatgaaat
     5941 aaatttaaaa tattttaaag aatttccttc ttcttgcaat gcctaacctt ttagtttttc
     6001 aaattcatcc atcagaaatt ctcttaaatt ttcagcttct tcttcgcctt tttctagata
     6061 ctcaagcaat aaattttcta attcttttaa aaaagaaaaa agttcatttt gccagatact
     6121 atcgttttta ttgctcaaat tcatggtttg tatgaaagtc aactctctgc ttaaatcccc
     6181 aagtttttct aaaaattcat ctttttgatt agaatttttt aatgttaaat tagcattttg
     6241 gatattttct ttaaattctc tgattttttc atcgattaaa tcacaaaatt ttggataaat
     6301 atccatttta ataggctcta aaagagttcg ctcatctata tttaaagtaa gctttttaac
     6361 agcaaaataa agagctaaaa aagacaaagc tgctataagt aaataaattc ctagcattaa
     6421 taacccttaa gggctagcat tccgccatct aaattgatgc tttcaagtcc caatttttca
     6481 gctataaatt cagctgcaac catgcttcta tggccactac gacaaataaa agcaagtttt
     6541 ttactttcat ctcttttgct ttgaaattca tctaaaaatt tagcatttaa aagcccttga
     6601 ttatcatata aagccacaca ttgcgcatta gataaaatac cttcttccca ttctaaagga
     6661 gtacgcacat caaaaatttg atatgcgttc aaatcttgct ttgtccaaag acttgcaggg
     6721 atattttcta tcatgaaaaa gccttattga taatttttgt aaggcttgca ttaaattcag
     6781 caggattatc cactcccata ccttcgctta gttttgccat atttaaaact agggttgcta
     6841 tatctgcact aaaactttcg ttgtttttaa gacctgtaaa aatagcgtgt tttggattga
     6901 tttctaaaat aggtttgaaa ttttgttctt gacccatttg ttttaagagt tgttgcatag
     6961 caaaatcagg tttattttta tcataaacta tacaacttgg actatctttt aaacgactgg
     7021 ttagtcttac atcttcaact tgatctttta aaagttcttt aaatttagct acaagtggag
     7081 caaaagtatt tttttcttca tcgcttagtt catttttatc ttctacttga ttaatggcta
     7141 caaattttaa accttcaaat tctagcatag gagttaccaa agaatcaatc tcatcatcca
     7201 tgagtaaaac ttctatattt ttttgtttat actcttcaag caaaggagag gttcttaata
     7261 aactttcatt atttcctgct atataaaaaa tttccttttg ctcgccttga aggtcatttt
     7321 tatactcttc taaagagcgt aaattttcac ctttggtact tttataaagc atgagtttta
     7381 aaagactgtc tttttctccg ccaaaaccat aaagtccttc ttttaatacc ttaccaaagg
     7441 ttttaaagaa agataagtat ttttctttat cattgttttt aagtttttca agttcaccta
     7501 aaatcttttt aacgctagct tctttaacac cttttaaaat ttgattttct tgtaaaattt
     7561 cacgacttac attaagtggt aaatcttcta catcgataat cccccgcaca aaacgcaaat
     7621 aagttggtaa aagttcttta tcgtcatcgc tgataaatac gcgttttaca taaagtttta
     7681 agccactttg ataatccaca cggaataaat caaaaggtgc gttttgcggt atgaaaaata
     7741 aagaattata ttctaatttt ccttcacttt tagtgtgaag ataaagtaaa ggtttgtttg
     7801 aatcatgaaa attttgctca taaaatcttt cataatcttc tgctttaagg cttgattttt
     7861 gcattctcca taaagcattg gctttattga tttgagaaat tttaagttca gtttttcctt
     7921 cttcttctcc ttctttagca ggagtaaatt cttctttttc catgaaaatt ggaaattgaa
     7981 tatgattaga atatttttct ataatgcttt cgattttata agtattagca aactcatcat
     8041 cttttaagta taaagtaatg cttgttcctt gttcttcttt gtttgcgtca ttaatctcat
     8101 aaccatttgc atcagaactc caaagataag ctttatcatc taaagctttt ttgcttaaaa
     8161 cttcgatttt actagccacc ataaaagcag aataaaaacc tactccaaat tgtcctatga
     8221 gttgagaatc ttttttagca tcaccactta aattttctaa aaaactttta gtaccgcttt
     8281 ttgctatggt tccaaggttg ttaataagat catctttatc catacctata ccattatcac
     8341 taatgcttaa agttttttta tctttgtcaa ttttgatttc aattttaggt tcgaatttta
     8401 agcttttata tttatcatca cttacgctta aaaaattaag tttgtctaaa gcatcgcttg
     8461 catttgaaat aagctctctt aaaaaaattt ctttattaga atataaagaa tgtatcataa
     8521 gctgtaaaag ctgattgact tcggtttgaa attgcatttt aatttccttt gtaatttttt
     8581 aaagtggtat tttagcaaaa aatacaaatt ctaaagtaaa tttaaagatt tatttgaaaa
     8641 ttaaaaagcc aagccatgcg gcaaataagc aaagaaagac atttaagatg atatttaacg
     8701 caaaattaaa ataatttcca ctttgcaaaa gaagtaaatt ttgataagaa aaagtagaaa
     8761 aagttgtaaa agctcctaaa aaacctgtac ttataaagct tttaagcaaa ggagataaac
     8821 ctttattttg tgcataagaa aacaaaagtc ctatgataaa agaacccaaa acatttacaa
     8881 aaagagttcc aaaactgata gaataaggaa aaaatttatt cactaaattt atagaaagca
     8941 ttcttaagat tgctcctata aatcccccaa aaccaactac tagaagagta tttagcaaag
     9001 cttgactctt tcttgatcga gtaattcttg catttttttt ctggtgtttt caagccattt
     9061 ttcatcattt gtatcgacta aatccataca aatgatttta agtactccgc tgcttgcgct
     9121 aaaacttttt gtgtctaaaa tttttgcaga atccacaatt aaaataggtt gaactttaag
     9181 atttaatttt tcacttaaaa tttttgctcc actttgaaat ttaagcattt tttcattttt
     9241 agatctagtt ccttctggaa aaatagccaa aaccctatct tcactaattc tttcttttgc
     9301 ttcttttaaa actcgtacca aatcacgtgg attttttcta tctatacaaa gaagttttgg
     9361 ttttttcata gcaactttga aaataggaat ttctcctaat tcttttttgg caatccagca
     9421 taaattttta ggatataatt cttctaaagc gatgatatct aaagcacttt gatgattcat
     9481 taaaatcatc tgagcttgcg gattaaaagt accaatgatt tcttgtttat aagagatagt
     9541 atatctttga aatttagccc aaattttgcg gattttccaa agtgtgtttt gagattttgt
     9601 aaagcaaaaa caaaaaatca ccaaagcaac acttaaaaca aaaaaaatcc aaaaataaag
     9661 agctttaatt tttttgtaaa tcatctttat taacccaacc tatttttcca tcagaaaaca
     9721 gtactttaat ataattttgt cttttgccca aaacttctac tttttcatct gcatttgccg
     9781 tataaaaata agttgaaggc tctgtaggta aaattttagc cctagaacca gccttgataa
     9841 ttgcattttg agtattggta tctacaagaa aactaagcgc aaaacaaaca actgccaaag
     9901 ccagaataat gtaatttttt ctccatacaa ataaaactcc aaataaaacc gctaaaaacc
     9961 acaaagcata ttgtttataa atatttaagt ctttatttac aggatttaaa tcactctgag
    10021 tactaatctc atcgtcacta atttttaatt ttaaatttat attttcaagc tttttactgt
    10081 tcttattgaa atacgaaaat tcaaaatttg ttttacttaa tggcaaaata gcataataaa
    10141 aagcactaga agcattaaag tctcctttta aattttcaat accttgcttt tgaattcctt
    10201 ctataaaaaa gcttttaaga tttgtattgg ttgcgtttag ttctaccatc ataatgatat
    10261 tagcatcatc aaaataactc gctttaactt ttttaatttc caaagaactt gccacaaggt
    10321 gtgaaaaatc cttattggat aaagtatttt caaatttgat aggattaaga ttgatatcag
    10381 cctcttgaaa agcttcatta tttctaagaa gtttgataga aattttactc aaactagcat
    10441 ttgaattttt ggcttcaaac cataaagttg ttttatattc attgttgata aattcccatt
    10501 ttgcatctgg atttaaaaaa gataaattag ttttttctac gcttatgtta aaatcaaatt
    10561 ttgtattttc cgtagtgcga gcatagatcg taataggaaa aacttctcca acatatactc
    10621 tacttggata ttcatcattt gtaagaacca aactcccttt ggctacaaaa ggatcatcta
    10681 cattgctttc aaagtcattg ttttcatcac ttggcggaat attttgataa attttttgtt
    10741 cttcttgggg taatttttgt aattcttttt gcatattttc atcttggccg ctaaatacag
    10801 aaatttcacc cctggcaaac aatacaacaa tgctaaaaat taaagttaat aaaattttca
    10861 agataaaaag cctttaagca tttttaaacc tacatcatta cctagaactt tttcacaagc
    10921 acgctcagga tggggcataa gtccaaagat ttttttgttt tcatcacaaa ttcctgcgat
    10981 atcaaataca gaaccatttg gatttggctc gtattttaga ataataagat ctttatcttg
    11041 caattctttt aaagtagtct catcagcgta ataatttccc tctccatggg caattggtaa
    11101 actaataatt tcatcttttt tgaaattttt caaaaaggca ttatcattag aaaccactct
    11161 taaactttgg ttttttgaga taaagctaag attgttgtta tgcttcattg caccttttaa
    11221 aagaccactt tcaagtaaaa tttgaaaacc attacaaata cctaagatat atcctccttt
    11281 ttttgcatga ttaaaaacac cttgcatagc aggagcaagt tttgcaatag ctgcgcatct
    11341 tagataatct ccataagaaa atcctcctgg taaaacaact aaatctgcat caaattcttt
    11401 ttcttcatgc caaacaatct gcgtttttac tccaagtttt tcaaaggcat aagctgtatc
    11461 aatttcacaa tttgtccccg gaaatctaat aatagcaact ttcattttac tctttctcaa
    11521 ttacaagctc ataatcttca atgacgctat ttaccaacaa ctcttcacac atttttttta
    11581 cttgttcttt ggctaatttt tcatctttct catcaagaga aattttgatt tgttttgcta
    11641 tttttacttc tttaacacta ttaaaattta aagaatgcaa agctttttcc accgctttac
    11701 cttgtggatc taaaacccca ttttttaaag aaatatttac aataacttcc atatttttcc
    11761 ttaatttaat attcttttta aaacttcttc ataagccatt tttacattac ctagatcttg
    11821 acgaaatcta tctttatcta atttttcatt gctaaattta tcccaaaatc tacaactatc
    11881 agggcttatt tcatcagcta aaacaagctc attatcttta gttaaaccca gttcgatttt
    11941 aaagtcaatc agccttaaat ttttattatc aaaaaatgga gttaaaatag agttaatctt
    12001 tctagccata tttttaattt cactaatttg agcttcattt tgcactaaat ttaaaatcaa
    12061 acaatgctca tcattgataa aaggatcgcc taaggcatca tctttaagac aaaattccac
    12121 caaagcaaaa ggtagcacag tgccatcttt aatgcccagt ctttttgtaa gagaacctgt
    12181 tgcaacattg cgtactataa cttcaatagg aacaatttta cattttttaa ccacttgttc
    12241 tgtatcgctt atagtttcta ccaaatgggt tttaatccca tttttttcga gcaaatgaaa
    12301 aatttcagta ctgattttac agtttaatgc accttttcca ctttcattgc ctcttttttc
    12361 tgcattaaaa gcagttaaat catctttaaa ctcactaatt agtaaatttt catcatcagt
    12421 tttgaaaagt tttttacctt ttccttcgta gagcatttct ttttttgtca ttttattgtc
    12481 cttgtttgat atttaaaatt ttaatagtat caatagccga ttttaactgt gcgtcatcat
    12541 tgatttgttt ttgactgatt agatttttat tgtctttatt ttcttgttta tcttcttttt
    12601 tatttttatc tattttttca agctcacttt ctaaatgttg ttttaagtcg ctttctttta
    12661 tagaaaaacc atcttcttga gtatttactt tacctggaaa aacttcaata tcaggtttta
    12721 cacccactgc ttgaatagta cgtccgcttg gaagataata tcttgcgata gtaagcctta
    12781 aagcttcagt tttattaata ggtatgattt gctgaacact accttttcca aaagtatttt
    12841 cacccacaat aacaccgcgt ttaagatctt gtaaagctcc acttacgatt tcacttgcac
    12901 tagcacttcc accatttaca agcacaacca aagaagcatt agaaattttg tttttaggat
    12961 cggctttata ttcttgattt tcacttgcga tgcgtccttt ttgagaaaca ataacacctt
    13021 tatctacaaa taaatttaca agtcctatgg cttgatttaa aagtccacca ggattatttc
    13081 taagatctaa aataactcct ttaacattag gatatttttt aagttcttta cttgccacat
    13141 ctacaacatt tttatcaaaa tttgtaaccc taagataaag aatgttttca ttttctatca
    13201 tttttgcata aacactttct atcttaataa tttctcttgt aagtgtaaca tcaaaaggtt
    13261 ttgttgcacc ttttctaaaa atggttaaag tgatttgagt ttttggctta ccacgcattt
    13321 tatctacagc atcattgaga ttaattccta aagtggcctc atcattaatt tttaaaataa
    13381 tatctcctga ttttatccct gctttatctg ctggtgttcc ttctatagga gaaacaactg
    13441 ttaaagcacc atctttcata cctacggtta taccaaggcc gccaaattca ccattagttt
    13501 gaattttcat atcattaaaa tctttttcat ttaaaaaaga agaatgcgca tcaagattgc
    13561 ttaaaagccc tgataaagat ttatccacca aatcgctgat attttgatca tccacatagt
    13621 attgctctac tatagcaaga gtttttgtaa gcttatctaa agcttctagg cgtttttgaa
    13681 cctgctcttc tttttgatca actttagctt gtaaatgact tgttaaaaat agacataaaa
    13741 tgaaagtagt agcaaagcct gcaagacccg caaaaaatcg ttttgttttc aaaataagct
    13801 ccatcattga gttttagttt aattagttta aagagtaaat tttaataaaa attgcttaaa
    13861 acttcgtaaa taaatttaaa ttcttaaaaa tatgttaaaa tagactaaaa attccaaaaa
    13921 gaaagttaat acaatgtgcc aagaaaaaca tactcataca cattctcaaa aacatcttaa
    13981 agcagtttgc aatcgtctaa gtagaaccat agggcattta agcgctatta aaagaatggt
    14041 tgaaaatgac aaagactgta gtgaaatttt aatccagctt gctgccgtaa aagccgaagt
    14101 taacaatact gcaaaaatag ttttaaaaga acatttagct cattgtatgg tacatgctat
    14161 agaagaaaat gatattcaaa gtatagaaga attaaacaag gctatagata tgtttatgaa
    14221 ataatctaaa attagtcatt tgtcctatta tttaaaaaat tttactcaat taacttgaca
    14281 ttatatgact aaagttatat aatagcaagt atataaacta aataaaggat aaaacatggc
    14341 aaatatacaa gattttttaa ctgataatat gctttcaaat cttgaaagtg cagcatcttt
    14401 agctatacat tctaaaaata atgaagttgt acctttacat cttttatggg ctttaagcgt
    14461 agataatgca agtattttaa atcaaatttt aaataaatta aatatttcta aagaagcctt
    14521 agagcttgaa attaaaagca gaatttcaaa acttgcaacg agttcaaatg taaaccgtga
    14581 aaatatacgc ttttccaatg aacttataaa ttcattagaa aatgctaaag gattaatgag
    14641 tgctaatgga gatagttatt taagtgtgga tacttggctt ataagtgaaa gtcaaaaaag
    14701 tcctattaaa gaaattttgg cgcaattttt agatttaaga gaatttcaaa aagagcttga
    14761 aagtctaaga gcgggacgca aaatcgatag caaaacaagc gatgaaacct tagacagctt
    14821 aaataaattt ggtatagatt taaccttaaa agcaagcgag ggtaaacttg atcctgttat
    14881 aggcagagaa gaagaaatcg aacgtttgat gcaaatttta atacgcaaaa ccaaaaataa
    14941 ccctatactt ttaggtgaac caggcgtagg aaaaacagct atagtagaag ctttagcaca
    15001 aagaattatc aaaaaagatg ttccaaaatc tttgcaaaat aaaaaagtta tcgctcttga
    15061 tatgagtgct ttaattgcag gtgcaaaata cagaggagaa ttcgaagata gattaaaagc
    15121 tgtggttaat gaagtgataa aaagtgaaaa tatcattctt tttatcgatg aaattcacac
    15181 tatagtagga gctggagcga gtgaaggcag tatggatgcg gcaaatattt taaaacccgc
    15241 tcttgcaaga ggtgaactcc ataccatagg cgcaactact ttaaaagaat atcgtaaata
    15301 ttttgaaaaa gatgcagcct tgcaacgccg ttttcaacct gtaaatgtag gtgagccaag
    15361 tgttaatgag gctttggcta tgttaagggg tataaaagaa aagcttgaaa ttcatcataa
    15421 tgtaactata aatgatagcg ctttagtagc tgcagctaaa ctttcaaagc gttatatagc
    15481 ggatcgtttt ttacctgata aggccattga tttaatcgat gaagctgcag ctgaactgaa
    15541 aatgcaaatt gaaagcgaac caagttcttt aagaaaagta cgcaaagata tagaaacttt
    15601 agaagttgaa aatgaagctt taaaaatgga aaatgatgaa aaaaatcaaa aaagactcga
    15661 tgaaatcgca aaagaactag ctaatttaaa agaaaaacaa aatgccctaa attcacagtt
    15721 tgaaaatgaa aaaagtgttt ttgatggcat aagtgctaag aaaaaagaaa ttgatctgct
    15781 taaaaatgaa gcttctttgg ctaaagctag aggtgaattt caaaaagcag ccgagctaga
    15841 gtatggaaaa attccaagtc ttgaaaaaga agtagaaatt ttagaagata aatggaaaaa
    15901 aatgagtgaa aatggagttt tacttaaaaa tcaagtggat gaggatttgg ttgctggaat
    15961 tttaagcaaa tggacgggta ttagcgtgca aaaaatgtta acttctgaaa aacaaaaatt
    16021 cttagaagtg gaaaaacatt taaaagaaag tgtcatagga caagataagg ccttaagtgc
    16081 tttagctaga gccattaaac gtaacaaagc agggcttaat gcggacaata aacctatagg
    16141 aagcttttta tttttagggc caacaggggt aggaaaaaca caatcggcta aagctttggc
    16201 aaaattttta tttgatgatg aaaaagcaat gattcgcttt gatatgagtg aatttatgga
    16261 aaaacatagt gtttcaagac tcttaggtgc gcctccagga tatataggac atgaagaagg
    16321 tggagagctt actgaagccg tacgaagaaa accttatagc gtgcttttgt ttgatgaagt
    16381 tgaaaaagca cataaagatg tatttaatgt gcttttaggg attttagatg atggtagagc
    16441 aaccgatagc aaaggtgtaa cagtggattt taaaaatacc attatcattc taacttctaa
    16501 tatcgcctca agtgccatta tgaatttaag tggaaaagaa caagaagatg cggtaaaaaa
    16561 tgagttaaaa aatttcttta aacctgagtt tttaaaccgt ttagatgata ttatcacctt
    16621 taatccactt ggaaaagatg aagcttatga aatagtcaag cttttattta aagatttaca
    16681 aatgagctta gaaaacaagg gaataaaagc aagtttaagc gaaaatgcag cccttttaat
    16741 cgctaaagat ggttttgacc ctgattttgg tgctagacct ttaagaagag ctatttatga
    16801 tcttatagaa gataaattaa gcgatatgat acttgctgat gaacttcatg aaaatgatag
    16861 cattatcatt gatgcaaaag atgatgaaat aatcatcaaa aaagcttaat cattttgaaa
    16921 gtagatcttt ctactttcaa aatataatct cgctttcatt aaatttcata tttacttttg
    16981 gtaatggtga tttggtggta taataagcac tttctccttt ataatttcca cgataaactc
    17041 cattaggaat gctaaatttt ctagttgtat cagggaattt ttctatatat tgagttaaaa
    17101 attctctaaa cacaggagca gctgttctag ccccaccttc tgtataacgc ataggtttgt
    17161 tgttatcatt tccataccaa atgattgctt ctatttcagg cgtaagtcca caaaaccaag
    17221 catcaacact tttattcgtt gttcctgttt ttcctgctat ttctatatct tttactcttg
    17281 cattacgccc tgtgcctttt tcaacaacat ttctcatcat atctaaaacc agaaaacttt
    17341 gcgcttcatc gctgacttta cgctcatttg agttaaattc catgatggtt ttaccggttt
    17401 tatcctgaac ttgtctgata atttgaggat ctttaatcgt accatagttc ccaaacatgg
    17461 tataaaattt cgaatactcc aaaggagaaa taccaaaact tcccaatacg attgataaat
    17521 taggcggtat atctttaaat ccaaattcca ttagtttaga gtaaagaaca tcaagcccca
    17581 tatcaagtgc gagattaatg gtagctaaat ttcttgatct tgttaaagct tcttttaagg
    17641 taattaaacc taaaaattta cccccttcat ttttaggttt ccaatcctca ttattacccg
    17701 ctccaccttc aaaaattcta gaaatatcag caatttcact cataggcgaa tatcctaaat
    17761 taatcgccac ttgatacaca aaaggtttaa aagagcttcc aggttgacgc atactttgag
    17821 tagcgcggtt ataattactt ttttcataat caactccacc taccaaagct aaaacatcac
    17881 cactttgatg atttaccacg accatagctc cgttcaaagt gcttaaattt gcatctttat
    17941 cgcgttttac tatctcatca taaccaaatt ttaaagcatt ctgtgccata ttttgaacat
    18001 ctaagtctat atttaaaatg attttatatc cacctgtttt taagtctttg atattagggc
    18061 ttaattgttt aatcacttca tctacgacat aaggagcagc attttgagta agcgtatcat
    18121 cataaacttg cggaatttct ttaatggcta tatcataatc tgcttttgaa atccaaccta
    18181 gattatacat tcttgaaata acattatttg ctcttgaaat ggaaagatct aaatgctttg
    18241 taggatcata actgctaggt gcttttggca tacctactaa catagcaatc tctttaaggc
    18301 ttaattcatt taaattttta tgaaaatacc ccaaagctgc ggtttttact ccataatacc
    18361 catgtccaaa aaaaataaaa tttaaatacc tttctaaaat ttgctcttta gttaaaatgg
    18421 tttccatttt ataagcaagc aaagcttcgc gaattttacg cgtaatagtt ctttcagggg
    18481 ttaattccgt gtttttaata aattgctggg taagagtgga agctccttcc atggtttttc
    18541 caccgctttt tatgattttt acagcagctc taaaaatggc atcgatatta actccattat
    18601 gttcaaaaaa gcttgtatct tctatagcaa ccaaagcttc tataaggcgt ggaggaagct
    18661 cttcataagg agcgtaaaaa cgatgttgtt caaaaatatt agccacaagc ttgccatttc
    18721 tatcgtaaat ttgtgttgta agaggaggtt tgtattcttt aaaagtataa ccctcagtat
    18781 cagcacttgt gaaaagataa gccacataaa taaatccagc tataaacaaa agagtaaaaa
    18841 atgaaaaaat atattttaat attttcataa ataagccttt aaagtttgga tatcaagccc
    18901 taaagcagtg cttagatttc ctacttgttg ggtgatgaaa ttttgatgaa aaccctcaca
    18961 cataatacaa cccgccttgc ctttataaag atcattttct acataatctc ttaaaacatt
    19021 ttcatcaaaa tttttaaaat aaagtgtagt ttttgaaaga gaaaaaactc ttttttcagg
    19081 ttttacaagc aaaaaagccg ataaaatact tgcatacttt ccattttgca aggcaagcat
    19141 ttcataagct tcttttttat cctttgcttt ggtaagaatt ttttcatcta tacaaactat
    19201 actatctgca aaaagcaaat tttggttttg aaaatctttg cctaaagtac ttaaaaattg
    19261 tctttctttt tcaagaacta ttttttgaac atataaaaaa ggtgaaatat ttttatttaa
    19321 attttcatca taatcaaaac taacttgcct aaaatcaatc tttgcggttt taagcaagtt
    19381 agctcttgaa atggaacttg aagcaagaat taacattaaa gtgctttttc tatcgtttct
    19441 aagctttgtt ttaaagcttc attgattttg cttaaatctt ttccacctgc agtagcaaaa
    19501 tcatctcttc cgccaccatt tccacctaaa atttgcgccg cttctttaac caaagctcct
    19561 gcttttaaag gcacatcttt aacgccagct gctaaagtga ttttttcatc ttttacttgg
    19621 ataagtaaaa tcaccgcttt agcaaatttg tttttaaaat catcaatcat agctttaata
    19681 tcgccattat ctatacgttt tacgcaaatt tcaacacctt ggatattttt agaatcaagc
    19741 tcggttttac ttgaattttt aagctcattt tttaaactta aaatttcatt tttaagcttt
    19801 ttaatcccgc ttaaaatatc attattttta agttcatctt ttactttaga aagttcttcg
    19861 agttgatttt ttacaaattc taaagccgct ttagaaacca cagcttcaat acgtctaact
    19921 ccagcactca caccactttc tttaactatg taaaaacttc ctatttgagc agtattttta
    19981 acatgagttc ccccgcaaag ttctttgctt tcacctagag ttaaaacacg cacattgcct
    20041 tggtattttt cattaaacaa tgctatagca ccgctttttt tagcttcttc taaaggcata
    20101 ttttctaaga tagcttcgct tgagtttata atcattttat tgactctttt ttcaatgctt
    20161 tctagctctt ctttgtttaa agctttatga tgagtaaaat caaatcttag tttattgctt
    20221 tcaaccaaag atcctgcttg gcttacatga gaacctaaaa tttctcttaa agcatgatgt
    20281 aaaagatgag tggctgagtg gtggcgtgcg atttgctctc ttttttctgt atcgattctt
    20341 gcatgaacta tatcgttaac ttttagttct tcgcctgctt ttataaagct aagattgaga
    20401 ttaaaaaact tttgcgtatc taaaacttca cgcttagcta taaatccact atcagcactt
    20461 tgccccccac ttgttgcata aaaaggtgtg ttttcaagca tcacccaacc cacatcttta
    20521 agggtggaaa cttctttaaa atcttcatct aaaagggcta aaattttact ttcgcattct
    20581 gctttttcat aacctacgaa atgattttct ccaaattttt caagtaagtt tttaaaatct
    20641 ccgcttgcag ttttatctcc acttcctttc caagaagcct tagcgcgtgc tttttgctca
    20701 ttcatgaaaa gttcaaattt ttcttcatca actttaagat ttttttctct tagcatatca
    20761 gccgttaaat caagcggaaa accataagta tcataaagct taaaggctac ttctccgcta
    20821 aaaatttctt tagtgttttt aagctcttca ttaaaaattt caatcccatt ttctatagtg
    20881 cttaaaaatc tttcttcttc aaggcgaatt tgttctttta taaagtcttt tttctcatta
    20941 agataggtat aatgtccgcc cattaaatcg cacacaatat caactagttt atacataaaa
    21001 gcttgtttaa aacctagcaa atatccatgt cttaaagcac gacgcaaaat acgacgcaaa
    21061 acataacctc taccttcttt atcaaaactt accccttgtg caagcaaaaa tacacttgat
    21121 cttatatgat cagctatgac tctaaaactt gctccgcttt cataaacata agttttatta
    21181 caaagttttg aaatttcatt gatgattggc ataaaaagcg agctatcaaa attgctaaat
    21241 ttaccttctt taatcgctgt taccctttca agccccattc ctgtatcaat gcttggcttt
    21301 ggcagtgggc taagcactcc atcagcactt ctttcgtatt gcatgaaaac aagattccag
    21361 atttctaaaa atctatctcc atctccgccc atataatctt cgcttgagtt aaaatgctct
    21421 tgtccttggt cataaaaaat ctcactacaa ggaccacaag gaccagtatc gcccatttgc
    21481 cagaagttat ctttatcgcc aaatttgtaa attctttctt tttgaatgtg tttttgccat
    21541 agattaaaag cttcatcatc gttttcatgc acggttacat aaagtctatc tttaggtagt
    21601 tttaaaactt cagttacaaa ttcccaagca taagctatgg cttgttcttt aaaataatcc
    21661 ccaaaactaa aattcccaag catttcaaaa aaagtatgat ggcgtgcggt atatcctaca
    21721 ttatctaagt cattgtgctt tccacccgct cttatacaag tttgacagct tgttttgcgt
    21781 ggagggtttg ggcgtggaat ttctcctgta aatatacttt taaaaggcac catacccgca
    21841 ttagtaaaaa gtaaagttgc atcatcagga actaaaggac ttgacggggt tatctcatgt
    21901 ccttttgatg caaaaaaatc caaataagct tttctaatat ccatgaattt tcctaaagaa
    21961 atttttataa aaacatatca taccaaaatt actttaaatt aagtaaaact aaaatacaat
    22021 aaacattttt atttaatttt atttctctaa ggttttttat gaattttatc aatcttcaag
    22081 cccaatatct cgcatacaaa gatgaaatca atgctgaaat tgaaagcgtt ttatcaagct
    22141 cttcttttat aggcggtaca aagcttaacg aatttgagca aaatttagct cattttttag
    22201 gtgttaaaca cgctataggt tgttcaagtg gaaccagtgc tttatatctt gccttaagaa
    22261 ccttagatat tggcaaagat gatgaagtta tagtgcctag ttttactttc atagcaacag
    22321 ctgaagttgt ggccttggta ggtgcaaaac ctgtttttgt agatataaat ttatcaaatt
    22381 acaatcttga ttttgaagca gtgcaaaaag caataactcc aaaaactaaa gctgttatag
    22441 tagtgagtat gtttggacaa atgagtgatt taagggcttt agaagaaatt ttaaaagata
    22501 aaaatatcac tttgatcgaa gatggtgcac aaagttttgg cgcaagtttc aaaggagaaa
    22561 aatcctgctc tatagctaaa atttcatgca caagcttttt tccttcgaag cctttgggag
    22621 cttatggcga tggcggggct attttttgcc atgatgatga aattgctaaa aaaataagaa
    22681 ttttactcaa tcacggacaa actcagcgtt ataaacatga atttataggt ataaatggac
    22741 gccttgacac cttacaagca gcgattttaa atgttaagtt aaaataccta gaaaaagaat
    22801 tagacaaaag acaaaaatta gcacaaattt ataatgcaaa tttaaaaaac tgtcaaattc
    22861 cacaaattaa tccaaatgct tttagcgctt atgcacaata cagtgtttta gttgaagata
    22921 gagctagtgt attgcaaaaa tttgaaaaag ctaatatacc ttatgctata cactatccaa
    22981 cccctttgca taaacaacct tgctttagtg agttttcaaa tttagaactt aaaaattcag
    23041 aatacgcaag cgaacacatc ttatctttgc ctttttcacc ttttttaagt gaagaagagc
    23101 aagagcaagt tatttgtatt tttaaagatt gattccatga aaataggtat cataggcctt
    23161 ggaaaaatgg ggcaaaacca cttaaatgaa cttagtaaaa attctcattt taaacttaat
    23221 gcactttttg atctttgcaa aaatccaaac ctaaatattt ttgatgatat tttttatgat
    23281 gatctggata aatttttaaa tcaaaataat gatattatca tcatagcaac acctacaaat
    23341 tcacatttaa caatagcaaa aaaagttttt aaacaatgca aatgcgtttt aatcgaaaag
    23401 cctttagctc taaatttaaa agaaatagac gaaatttcaa atttagctaa agaatacagc
    23461 ataaaagtag gtgtaggttt ttgcgaaaga tttaatcctg cggttttagc cctaaaaaaa
    23521 gagcttgaaa atgaagaaat tatcagcatt aacatacaaa gattttcacc ctacccacaa
    23581 agaatcagcg atgtagggat tttgcaagat ttggctgtgc atgatcttga tttgctttgt
    23641 tttttaagca aacaagaaat aacaaaaacc aatttgctta aaaaatacac ccaagatcaa
    23701 acaagagaaa gtgaaagcat tattctatgt gagcttgaaa aatgtattgc tagcatacat
    23761 caaagttgga atagcacaca aaaactaaga aaaattcatc ttattactaa aaatcatttt
    23821 tatgaagcca atttaaatga cttttcttta ttaaaagatg gaaattttat agaacttact
    23881 caacaaagtc cacttttttc agaacacgaa gctttgttaa aacttatcga taatcaaccc
    23941 aatcatttag ccagcacgag cgatgcttac aaagttcaag aaattttaga aaggtttgcg
    24001 tgaaattagt tttattttta aatatgggcg gagctacgaa tttacaagat tgtgaagttt
    24061 ttttaaaaaa tatgtttaat gatccttata ttttaggaat caaaaatcga tttttaagaa
    24121 aatttgtagc atggatcata acaaaggctc gcgttaaagc catgcaagaa aactataaaa
    24181 aaatgggcgg aaaatcccct ttaaacgaac ttactcaaag cctgtgtgac aagcttaatt
    24241 taaaacaaga tgaatttaaa tttgattttg taaatcttta tgttcctcct tttgccacag
    24301 aaattttgca aaaatacact ttaaatgcaa gtgatgaaat cattcttttt ccactttatc
    24361 cgcaccattc ttgcaccaca gtaacttcat ctttagaagt tctgcaaaat gaaatttcaa
    24421 agcaaaaaat tcaagcaaaa gtaaaaacta tagatatttt ttacaaaaat gagctttata
    24481 acgagatgat agtttcgcac attttggcta aaaaaagtaa atttgatgcc aaaattttga
    24541 ttttttcagc gcattcttta ccacaaagca ttattgataa aggtgattta tatgaaaagc
    24601 atgtaaatga tcatgtagaa attttaaaag aaaagctaaa agatcatttt gatgaattta
    24661 ttttagctta tcagtctaaa ctaggccctg taaaatggct tgaaccaaat acaagcgatg
    24721 ttttggcaaa tttaaacgat aaagctctga tttaccctat ttctttttgc attgattgtt
    24781 ctgaaacgat ttttgagcta ggtatggagt ataaacattt agcaaagtgc gattatgatt
    24841 taatcacttg cccaaatgat agtgatgaat ttatccactt tattttaaag tatttgcctg
    24901 attttaatta agaatgattt tgaagtcctt gtttatgatt acaaggactt tttagtaaaa
    24961 atttagccaa ctaagctaaa gtataagctt tttctccgtg caaactcaca tctaagcctt
    25021 tttgctctac ttcttctttt actcttaagt ctgtaaaaca agagataatc ttaaaaataa
    25081 caaagcttat aagagctgac aaaaccacac aaatcacaat agcaaaaatt tgctctttta
    25141 aaagttccaa acttccgctg ataaaaaatc cctcgccaag tgcattttgg gcaatcacat
    25201 taggatttac tttagcactt gcaaaaagcc ctgtggcaat tcctccccaa atacctccga
    25261 ttccatgtaa agaaaaggca tctaaagaat catcccattt gagtttgtat ttaataaaac
    25321 ttaaaccaaa ataacaaaac acagaagaca aagtccctat aacaagagaa gcataaatat
    25381 ctacataacc gcaagctgga gtaattccca caagccctgc tacaagccca ctaagtccac
    25441 ctaaaatagt cggtttttta tagatgagcc actcaagtac cacccaagat aaaaagccgc
    25501 aagctgctga tataatactt actataaaag cattgatagc aacatcattc atttcgccag
    25561 cacttccagc attaaaacct aaccatccta taaaaagcaa aatcgcacct aagaaagcat
    25621 aaggaataga atgcgcgttt ttatcctcat catcactttt tctagcgcct accatcaaag
    25681 ctcctacaag tccagcaacc ccagagctaa tatgcacaac accgccccca gcaaaatcaa
    25741 gacttcctct tttaagcaaa aatccctcac tgctccaaat catatgtgct aacacatcat
    25801 aaactaaagt actccaaaaa agtagaaata tcaccaaaac acccagttta attcttccca
    25861 ccaaagagcc tgttatgatg gcagatgcaa taagtgcaaa catcatttga aaaatcacaa
    25921 aaagaatatt tggaacgcct gaagcgttgt atccgctaat accctctaag aggaaattct
    25981 cgaaatttcc tacaagccca agtccttcat ctttaccaaa agaaagacta aatccaagca
    26041 ctacccattg taaagtaata acaccaaaaa caataaagca attcattata gtattaagag
    26101 tatttttact tcttaccata cctgaataaa acattgccaa agctggagtc ataagcaaaa
    26161 ctagcaaagt acacaacaca ataaaacttg aatttatcgc attcatttac ctgtcctttc
    26221 ttacaaaaat ttaattgcga gataattata ttt
//
LOCUS       DAPIWV010000007        25573 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.007, whole genome shotgun sequence.
ACCESSION   DAPIWV010000007 DAPIWV010000000
VERSION     DAPIWV010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25573
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.007"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..486)
                     /locus_tag="RJ272_000196"
     CDS             complement(<1..486)
                     /locus_tag="RJ272_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7381332.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YK"
     gene            542..1315
                     /locus_tag="RJ272_000197"
     CDS             542..1315
                     /locus_tag="RJ272_000197"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HDV7381333.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLRQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELNQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            1312..2406
                     /gene="pdxA"
                     /locus_tag="RJ272_000198"
     CDS             1312..2406
                     /gene="pdxA"
                     /locus_tag="RJ272_000198"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HDV7381334.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGRGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(2396..2998)
                     /locus_tag="RJ272_000199"
     CDS             complement(2396..2998)
                     /locus_tag="RJ272_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381335.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            3111..4310
                     /locus_tag="RJ272_000200"
     CDS             3111..4310
                     /locus_tag="RJ272_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7381336.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            4366..4686
                     /gene="ciaC"
                     /locus_tag="RJ272_000201"
     CDS             4366..4686
                     /gene="ciaC"
                     /locus_tag="RJ272_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HDV7381337.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            4870..5892
                     /locus_tag="RJ272_000202"
     CDS             4870..5892
                     /locus_tag="RJ272_000202"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDV7381338.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            5889..6791
                     /locus_tag="RJ272_000203"
     CDS             5889..6791
                     /locus_tag="RJ272_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HDV7381339.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(6788..7984)
                     /locus_tag="RJ272_000204"
     CDS             complement(6788..7984)
                     /locus_tag="RJ272_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381340.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(7986..9788)
                     /gene="uvrC"
                     /locus_tag="RJ272_000205"
     CDS             complement(7986..9788)
                     /gene="uvrC"
                     /locus_tag="RJ272_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDV7381341.1"
                     /translation="MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIRNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(9781..10275)
                     /locus_tag="RJ272_000206"
     CDS             complement(9781..10275)
                     /locus_tag="RJ272_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381342.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFEDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            10414..11949
                     /gene="guaA"
                     /locus_tag="RJ272_000207"
     CDS             10414..11949
                     /gene="guaA"
                     /locus_tag="RJ272_000207"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDV7381343.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSEEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPGLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            12035..13495
                     /locus_tag="RJ272_000208"
     CDS             12035..13495
                     /locus_tag="RJ272_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381344.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQEILAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            13735..14985
                     /gene="purD"
                     /locus_tag="RJ272_000209"
     CDS             13735..14985
                     /gene="purD"
                     /locus_tag="RJ272_000209"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDV7381345.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            14982..15434
                     /locus_tag="RJ272_000210"
     CDS             14982..15434
                     /locus_tag="RJ272_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7381346.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            15424..17472
                     /locus_tag="RJ272_000211"
     CDS             15424..17472
                     /locus_tag="RJ272_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HDV7381347.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYTVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            17542..19701
                     /locus_tag="RJ272_000212"
     CDS             17542..19701
                     /locus_tag="RJ272_000212"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDV7381348.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEIAKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGPKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKIKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            19698..20180
                     /locus_tag="RJ272_000213"
     CDS             19698..20180
                     /locus_tag="RJ272_000213"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HDV7381349.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSIKSRQDGFYYQHPRNRF
                     WPILETLFNAKLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLNLIL
                     SQTKIQAIFTTGQSAYRFFVKFHPRLEAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            20238..20447
                     /locus_tag="RJ272_000214"
     CDS             20238..20447
                     /locus_tag="RJ272_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDV7381350.1"
                     /translation="MPFVNIRITKENGEPTTEQKQELIAGVTDLLAKVLNKNKSSTVV
                     IIDEIDTDNYGLGGKSITQARKEKS"
     gene            complement(20444..21106)
                     /locus_tag="RJ272_000215"
     CDS             complement(20444..21106)
                     /locus_tag="RJ272_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HDV7381351.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     VS"
     gene            complement(21124..22308)
                     /locus_tag="RJ272_000216"
     CDS             complement(21124..22308)
                     /locus_tag="RJ272_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7381352.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVASNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            22362..22817
                     /locus_tag="RJ272_000217"
     CDS             22362..22817
                     /locus_tag="RJ272_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HDV7381353.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            23069..24325
                     /locus_tag="RJ272_000218"
     CDS             23069..24325
                     /locus_tag="RJ272_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HDV7381354.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGILRYRYDT
                     GTFDKNWGTPNGNLNKSKQMHKYRAQVNFSAAIADNFKAFVQFDYNAADGGTGVNNKT
                     NAQKGLFVRQLYLTYTNEDVATSVIVGKQQLNTIWTDNGVDGLVGTGVKVVNNSIDGL
                     TLAAFAIDSFMEKEQISDLVGSNSSTFNVDSIGNLYGAAAVGSYEFLGGQFNPQLWLA
                     YWDQVAFFYAVDTAYSTTIFDGINWTLEGAYLGNSLDSELDKPRHANGNLFALKGSIE
                     VNGWDASLGGLYYGNKAKASTIVIEDQGNIGSLLAGEEIFYTTGSRLNGDTGRNIFGY
                     VTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNFSAFYSY
                     VNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(24440..25561)
                     /gene="dnaJ"
                     /locus_tag="RJ272_000219"
     CDS             complement(24440..25561)
                     /gene="dnaJ"
                     /locus_tag="RJ272_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDV7381355.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
BASE COUNT         9138 a         4176 c         3927 g         8332 t
ORIGIN      
        1 tttataataa gaatggtaat ttttttcata aaaactaata ataccaaaat caaaactttt
       61 aaaacttttt ccaaaagaaa gctcacaaga agcccctcct aaatcacaat acgcaaactc
      121 tccccaaatt ttaagccttc ttaaacctga ttgcatacct aaaacactga tcttagcttc
      181 acttttggca tctataagct taaaatcaat cccaaattct ttttttaaat gggcaaaaat
      241 ttcatttgta ttgcttgcct ttctaaaagc tgcagtcgct acagctctcg ctttgcttaa
      301 atcttgctct ttagctaaaa tactcaaagt attttttaat ctttgtatgg cttctttaga
      361 aatttctcca ctttgattta gatttttcgc tgccccaata acaaattcat attcttttaa
      421 tttatttaat ttttcatcca tttgtactgc tcttaaagta tttgaaccaa gatctatacc
      481 taacatgact ttccttattt gattttatag tataatagca aaaaagttct aaaggaaaaa
      541 tatgctttta ggtgtaaata tcgatcatat tgcagtgtta agacaagcta gaatggtaaa
      601 tgatcctgat cttttagaag ctgcttttat agtagctaga cacggagatc aaatcacttt
      661 gcatgtaaga gaagatcgcc gtcatgctca ggattttgac ttggaaaata ttataaaatt
      721 ttgcaaaagc cctatcaatt tagaatgtgc tttaaatgat gaaattttaa atttagctct
      781 taaactcaaa cctcaccgcg ttactttagt gcctgaaaaa agagaagagc ttactacaga
      841 aggggggctt tgtttaaatc atgctaaatt aagacaaagc atagaaaaac ttcaaaatgc
      901 aaacattgaa gtttcacttt ttattaatcc tagtttagaa gatatagaaa aatcaaaaat
      961 tttaaaagcc caattcatag agcttcatac aggacattat gcgaatttgc acaacgcact
     1021 ttttagtaat atctctcata ctgcttttgc cttaaaagaa ctcaatcaag ataaaaaaac
     1081 cttgcaagct caatttgaaa aagaattaca aaatttagaa ctctgtgcca aaaaaggcct
     1141 agaacttggc ttaaaagtag ccgcgggaca tggtttaaat tacaaaaatg taaaacccgt
     1201 agtaaaaatt aaagaaattt gcgagctaaa tataggacaa agcattgtag caagatctgt
     1261 atttacagga cttcaaaacg ctattttgga aatgaaagaa cttattaaaa gatgaaaaaa
     1321 ctagccatta gtataggcga tataaacggc ataggacttg aaattttagt gcgttctcat
     1381 gaagaactaa gcaaaatctg cacacctttt tattttatcc acgaaagctt gcttgataaa
     1441 gcttcaaaac ttttaaattt aaaacttttt aatgcaaaaa tcgtagcttt taaagatgga
     1501 aaagactatg agtttaattt tgtaaaaaaa gaaaattctc ttgaaattta ctctttctac
     1561 cttcctttag gctttaaagt ggatgaaaat tttgaaatca aagccggaga aatagataca
     1621 aaaagtggac tttatggttt tttaagtttt aaggcggcaa gttattttgt ctatgaaaaa
     1681 cacgcccatg ccttgcttac tctacctata cacaaaaaag cttgggaaga tgcaggactt
     1741 aaatacaaag gacacaccga tgctttaagg gattttttta aaaaaaatgc cattatgatg
     1801 ttaggttgca aagaactttt tgtagggctt tttagcgaac atataccttt agctaaggtg
     1861 agtaaaaaaa tcacttttaa aaatttaagt atctttttaa aagattttta caaagaaaca
     1921 cattttaaaa aaatggggct tttaggtttt aatcctcacg ctggagatta tggagttata
     1981 ggtggagaag aagaaaagat catggaaaaa gctatagcct ttgttaatgc ctttttacac
     2041 tctaaaaaag atgaaaaatt tttcaaaaaa gccttaaaag atgaaaattt acaaaaagaa
     2101 ttgcttttaa attttaaagg caggggcgtt tatctaccct atcctttagt ggctgataca
     2161 gcttttacta agactggttt aaaaaactgc aatcgtttag tggctatgta tcacgatctt
     2221 gcccttgctc ctttaaaggc cttgtatttt gataaaagca tcaatgtaag tttaaattta
     2281 cctatcatac gcgttagcgt tgatcatggc acggcctttg ataaggccta taaaaatgct
     2341 aaaatcaaca ctaaaagtta ttttgaagcg gctaaatttg caatcaattt acattctaaa
     2401 gcttaaattt agccctagaa tcaatcaaat cttctttagc taagctgtct ataaaatctt
     2461 gcaaatcttt attggtattt aaactttgag tgagtaaatt ttcatattta tcaactttat
     2521 ttttaaaaat ttgctctaaa acttctttag tctttgtatc tttttttgct ctttgcataa
     2581 gttctaataa aaccttaata taagcttctt gcatgcaatc acttgcattg agtaaagata
     2641 aaataggatt ttcccctgct tttgtatttt gcatattttt tatacaaatt tttctttctt
     2701 taagcatctt ttttgaaatg gctttaaaat cttttttcat ctttttatct gctttttttg
     2761 aaatattttg atataaacta ctatagatgt tatctactaa agcaagtttt ttattatcaa
     2821 attcattacg cacaccaatt ttattgcata tcataagttc atcatcactt ttgccatcat
     2881 atttgatttt agagcaatca aaactaggtt ttacttcatc tttataaata agctcatcaa
     2941 aactcaaagc ccctaaactc gccaaactta aaccaagcaa taaaataatt tttttcatta
     3001 tttaccttta aaatttttat tttattttaa caaaaatatt ttgaattttt taaggaaatt
     3061 aagcttttat tttattataa tgcgttttta ttttttataa ggaacttaaa atgcaaaatt
     3121 acaaaaaagc tctttttgca ctagctctta gtgctttttg tatgggcgta actgaatttg
     3181 ttatggcagg agttttggtt gatgttgaag cgtattttag cgtagatgca aaaaccgcgg
     3241 gctatcttac aaccttatat gctataggtg ttgttatagg tgctcctctt atcaccatac
     3301 ctttaagtcg ttttcataga catacacaac ttttaatcaa tcttggaatt tttgctttag
     3361 caaatttcat catctttttt agccaaaatt tctatcttac tgcttttgca cgctttatag
     3421 caggaacaca acatggggta ttttttgtca ttgccacctt agctgtaagt gctataactc
     3481 cagatgataa aaaatcaagt gctctagcta taatggtcac agggcttact gtagccttag
     3541 ttactggagt gccgcttgga acttttatag ggcattattt tggctttaaa tttatctttt
     3601 tactcatttt tatcattaca agtctagcat tttttggagt atggcatatg atgcccaaaa
     3661 atttacatcc tagcccaacc agtcttaaaa atctaatccc tgctttttct catcaaaatt
     3721 tgttaaaaac ttatactata accatttgta gttgtggggc tcaatttgtt ctttatactt
     3781 atttgcaaaa aatacttgta gaaataagcg gttttaaagt ccaagataca gcttatatct
     3841 tgcttttata tggaatttgt gcaatttgtg ggaatttatg gggcggaaaa atagtagata
     3901 aaaaaggtgc tattttttct ttgcgtctta ttttaagcat acaagttcta gtatttttaa
     3961 gtgtatttct caccatgcat tctaaaattt taatcatttt tagcgtagct ttgataggat
     4021 tttttgcctt ttcaaccata cctgcactaa aaatgcttag cattactaaa gctaaacgcc
     4081 atacttataa agtcatagac agtacagtaa gtgtgaatga agcagctttt aatgtaggca
     4141 tagctttagc aagtttttta ggtgggattg ttttagcaag attgggtata gaatttaatg
     4201 ctttattttc agcacttttt gtaagccctg ctttgatttt tgccttgctt tttgccaaag
     4261 ataaattaaa ttataaaaaa tttcaaagaa aaagttttac aaaggtataa attggaatag
     4321 aaattgcttg cttatttaat gtaaagttaa ataaaggagg agaaaatggt agtagataat
     4381 actcaaaaaa catcaaatgc tatctttagc accacaacta aagttaaaga aaaaaatact
     4441 tcggcagatg aatttcaagc cacattaaat gaagtaaaaa ataaagaaga aaaggaagat
     4501 aaaaaaacaa actcaagcaa atttactaac gaagacattg atcttggtgc tgttagagaa
     4561 gattttagat cttatgcttg gcaaaaaatg agagaagatc aatacaaaaa aaatgaggag
     4621 actttgctaa ataagctttt tactacaatt gacgcaggaa atgccacaaa caatacaaag
     4681 gcttaatata caaatcaatc aaaactcaaa ctacataaac gagaattcca ataattctcg
     4741 taaaatttct aataactctg gataaaatga aaaaatttat tatttcctct atatgaagaa
     4801 aatatagaaa aattgaccaa tttaatttat caaattctgt tataattttg ctaaaaacaa
     4861 aggaaaataa tgatttttat cgatgcttgc tttaaaaaac ctacacccta cacccctatt
     4921 tggatgatgc gtcaagcagg aaggtatttg ccagaatata tggaagtaag aaaacaagcg
     4981 ggtgattttc tctctttatg caaagactat aaaaaagctt ctgaagtttc tttacagcct
     5041 attgatattt tagatgtaga tgcagcaatc attttttcag atatcttagt tgttcctctt
     5101 gaaatgggta tgaatttacg ttttgaaaaa ggagaagggc ctgtttttga taatcctatt
     5161 tcaaccctag aagatttaga aaaacttgac gatcaaaatg cacataaaaa attaaattat
     5221 gtctatgatg ccttaaagct tacaagagaa aaattatctc aaaacaaggc tttaatagga
     5281 ttttgcggaa gcccttggac tatagctacc tatatgatag aaggaagtgg aagtaaaaat
     5341 tatgcaaagt gtaaaaaaat gctttatcaa aacccagaac ttttacataa aattctaaac
     5401 aaactaactc aagttttaaa actttattta gaagagcaaa ttaaagcagg tgctaatgct
     5461 atacaaattt ttgatagctg ggcaagtgct ttagaatatg ataagttttt tgaattctct
     5521 tttaattata tgcttgaaat ttcaaatttt attaaaagca aatacccaaa tatacctgta
     5581 attttattcc ctaaaggcat tagcggttat ttggatagaa tcgatggtaa ttttgatgtt
     5641 tttggagttg attggagcac tccgcttgat ttagcacgtg ataaactatc gcacaaatac
     5701 actcttcaag gcaacatgga accttgtaga ctttatgata aaaatgccat caaagaagga
     5761 gtcggaaaaa tactaaaaac catgcaaaat aaagctcata ttttcaactt aggacatggg
     5821 atcttgcctg atattcctgt tgaaaatgca aaatatttta tcaagcttgt acaagaaagt
     5881 tcagctaaat gaaaatactc tttggtcctg ttagctcaag gcgttttgga agatctttgg
     5941 gtatagattt aagccctagt aaaaaacaat gcaattttga ttgtgtttat tgcgagcttg
     6001 atccaaaaaa agcccaagaa aaacaggatg aaattatcag catagataaa attatctccg
     6061 aagttaaagt tatgcttgaa aaaaatgttg aatttgattt tcttaccctt actgccaacg
     6121 gagagcctag tctttatcct tatttaaatg agcttatttt atctttacgc agcattgcta
     6181 aagataaaaa attgcttatt ttaagcaatg gtacagctgt attagatgaa gacaaattta
     6241 atgctttgct aaaactagat gtggtcaaat ttagcctgga tagtgcagtt gctaaaactt
     6301 tttatcgtat tgatagagct ttaaaaaaca ttgacttaga aaaaatgata gaaaaaatgg
     6361 cagattttag agctaggttt aatggagatt tgattatgga aattctagtt gttaaagatc
     6421 ttaatgacaa cgaagaagaa tttgaagcac ttaatcaagc tttaaaaaaa atcatgcctt
     6481 taagagttga tctaagcacc atagatagac ctcctgctta tgctgttaaa aaagtaagcg
     6541 aagaaaaact tttagaactt tctaaactta tagattctac tcccgtactc ttagccaaaa
     6601 gacattatga aggtgaaaaa ctaagcttca atgaagaaga attattaaaa atgcttcatt
     6661 tgcgctcaca aagcgaaata gacattgaag tgaaatttga tgaacaatcc aaaactctct
     6721 taaatcaact tatcaaagaa aaaaaggtaa aaattctcga tttagctgga gttaaatttt
     6781 ataaagttta ggcctttggc aaatactttc taagtaaagt tataagatca tttctactta
     6841 catcacttaa aacttcgctc acacaatcaa aatccctaac tttttccttt gaaaaaaaga
     6901 tgatatggct ttgtggatgc tgttttttat aagcacttag caaatttctc atttgctcaa
     6961 gatcaaattt aattaattca taatcaagta aaatcaaacg ataagtctcc ttgcttaatt
     7021 cttgttttaa ttgactaaaa gaatttatac atatattttt atcacattgt ttttctatta
     7081 tattaaaaaa caaggttgca tcaaaatcat tttgtttaaa aagcaataca ttattttgat
     7141 aaggggtttt aaattttaaa gtgcaaacct tatcaagctt gttttgcaaa atattttcaa
     7201 gatctttttt ttcaaaaggt aaagttaaaa aatactcata atgtgtattt ttatgccgac
     7261 ccatcactat aaaatcataa tttttcttta catttttatt gaaaatttta tccttgataa
     7321 aaatcaaatg aaagtcatta acatcaaaac ttaaattttt aaaacaagtg ctttctatgc
     7381 caaaatacga aagtaaattt gcaagtaaaa aattctcaag ctcatcatta ttaactatgg
     7441 ccacacttgc ttcaaattgc aaaacctttc catgagatgt tcctataatg cttttatgat
     7501 gctctaaagc ctcatttaat tctaatctaa tttgatcttt ttgagaattt aaggcattta
     7561 aaatcaaaga attaatttct ttattatacc cttcatttaa gcaacgcatt gcattagata
     7621 tatttacaag ctgatataaa ttttcctcca ataaatgcaa atatctatct ttttcatggg
     7681 atattttagt taaattttgg ctcgtagttt caaatttttc ctttaacaaa tcaagcgcac
     7741 tatcaacatc aatctttttt tgaaaattta aaaaatcatt ttgcatgcaa aaaatttttt
     7801 gatatatttt gtttatattt ctattttgcc taaaagcaaa aataaaaagt gttaaagata
     7861 aaacaaaaat gctagaaaac atacctattt tcagttgttc agtaacacta tcaagctttg
     7921 agatatcaat acttaaatac gctaaaatta gattaaaaat aaaaattatc cctgctaata
     7981 tcaaatcaat tttcctttat cttttgcgcc gctttcctgc ctacaagcat tgtaagatct
     8041 ttaaaatcag ccttatatat agattcaaaa tttccataat acgctaaaag tttttgtata
     8101 acccctgaac taagtcctaa atttgcaagc ttagaacttt tcaagtcctg ttttttctta
     8161 gtattttgat gaaagctgat agcaaaacgg tgtgcttcat ctcttaattt ctgtaagaat
     8221 tgtagttttt tatcgttaat gcttagacta aattctcctt ttaaggaatg aattttatcc
     8281 ttagcacccc ctttagctct atgtgctttt gcatcgattt tttcttttga aatagctaaa
     8341 atatcgacat ttgccccact acttacaatg atttctttag ccaaatcaag caaagccttt
     8401 cccccatcta taagccataa atcaggagga ggtattttat caaagtccaa agccctacgc
     8461 gttaaaactt cacgcatttg atcatagtca tttttatgtt ttaaatgaaa ttttctatat
     8521 tttgacttat cccaagaatt tattctataa gttaccatag ctccaacatt tgccacgcct
     8581 tgcaaatgag aattgtcaaa aatttctata tcatttggta aattttcaag ctcaaaataa
     8641 aactttaatt ctttttgtat agtaaaatca tgattttttt gctctttttc tatatttaaa
     8701 agggcatttt gaaaagccaa atcacaaatt cttctttttt ctcctatttt agggatttta
     8761 atactgattt ttttatcaaa cctttggctt aaaatttctt ctaaaagcac tctatcttca
     8821 aattcttcat aaacataaat aacatttgca agcaaaggaa tatccatgct aaaattttct
     8881 aaaatcagtt gcttataaat ttcattttga tcccattgta tatcatttct tataggagta
     8941 atcttagaat ttgcactgat aatttttcca ttttgcacca caaaacgcaa ggttgaaagc
     9001 acggaatttt taaaagctaa agcaaatact tcaaaatctt ctaatttcgc aatatctatt
     9061 tcaaccttaa cttccaaatc tttaatcatt gcaatctgat ctcttacttt agctgcttct
     9121 tcgtaatttt cattttgtgc taaaacaagc atttgttttt ctaagttttt aagcaaaaca
     9181 ctaggattta aaagtgcgtg tatagcctca tctaaaattt caaggtattt ttccctgctg
     9241 atgagtttat cacaaggtgc aagacaacga gaaatttgat aaaaaataca aggggattta
     9301 caacttgctt tttgctttaa aggatagtat aaataaagcg catctaaaag ctctctagcg
     9361 cctttaaaaa aagggccaaa atatttaatt ttgctttttt ttactaattt tctagtgatc
     9421 tcaaagcgtg gaaattcttc ttcaaaatcc acataaatat aaggataagt tttatcatct
     9481 cttagcaaaa tattatattt tggatgcagt tgtttgataa aagaattttc taaaatcaaa
     9541 gcatcagcct ctgaattagt agcaataaat tccaaatgca ctgtttcttc aatcattttt
     9601 tgaattctta aagaatttct tggatttgca tgtaaatttg gagtaaaggc aaaataagat
     9661 ttgacacgat ttttaagatt tttagccttg cctacatata aaagctttcc ttcttgatta
     9721 aaatattgat acactccagc actattggga agagttttta actcattttc taaattctct
     9781 ttaatcaaga ttagaacctt tttttataag ctctcttaaa tcttcaaatt tcttaaataa
     9841 ttttttatct tcaaagcaat ttttaaattc acccttagaa agctccaaat aagaattttt
     9901 agagagtttt tcatcatttt tgtttttatt tgccgcataa gtgtattttt gagaaaagat
     9961 ttttatatct tttatatcaa caaatccact taaaggatat ttctgtccat atgcttttat
    10021 gagaaattta atataaattt tgctatcatc atgatttaat tcttgataag ctgctggatg
    10081 taaggttatt atatttaaaa tatgattttt tacataaatt ttagcaatca aacgttgctt
    10141 agcaagcgga aaagaactta aaaaatcttt gcaaaaaaat aaggttttta aaggcttata
    10201 atgaggttta tccatcaatt cattaataac agcactagcg tttttagtca tcttaatatt
    10261 atttcttttt cccataagat gattttagca tttcttttct taattttctt ctgtgcttgc
    10321 ggatataaag gcaaccctca atacacaagc tatgaacaaa atggttcggt aaaaaccatt
    10381 aaaaaatacg aacaattaca taggtggtaa ataatgaaaa aagcagatat tttagtttta
    10441 gactttggct ctcaatacac tcagcttata gcaagacgct taagggaaca aggagtttat
    10501 gcagaaattt taccttttaa tgtaagcttg gctgatatta aggcgaaaga accaaaaggt
    10561 attattttaa gcggaggtcc agcaagcgta tatgcaactg atgcgtattt ttgcgataaa
    10621 ggcatatttg acttaaatct acctattctt ggaatttgtt atggtatgca actcatggca
    10681 catcattaca aagctacagt agcacctgca ggacataaag aatacggcaa agcaaacata
    10741 gaagttaaaa aagatagcgc tttatttaaa aatcttccaa aaaaacaaac cgtttggatg
    10801 agtcattctg ataaagtaga aaatttacct caaggttttg aagttttagc cacaagtgaa
    10861 aatagccctt tttgtgtttt tggaaatgag gataaaaaat tctttgctct acaatttcac
    10921 ccagaagtac aacacagcga atttggcaaa aatatcttaa aaaattttgc taaatacgct
    10981 tgcaattgtg aaagtgtttg gaatatgggt tcttttgcaa aaactcaagc agaaaaaatc
    11041 cgcgaagaag taggcaatga taaagtgctt tgtgctgtaa gtggcggagt agatagtagc
    11101 gtagttgctg cacttttagc tagcgctata aaagagcaag ttatagtagt ttttgtagat
    11161 aatggacttt taagaagtga agaaaaagaa caagttgaat ttatgtttaa aaacacttta
    11221 ggcatcgatc tcatcagcat tgatgcaagt gaaattttct taagtcgctt agctaatgtc
    11281 acagatcctg aacaaaaaag aaaaatcata ggaaatacct ttatagaagt ttttgaagaa
    11341 gaagcaaaaa aacataaaga tgtaaaatat ctcgctcaag gcacacttta tactgatatc
    11401 atagaaagtt ctgttgtagg tgcaagcaaa accattaaaa gccatcataa tgtagggggc
    11461 ttacctgaaa aaatgaatct taaactcata gagcctttaa aagaaatttt taaagatgaa
    11521 gtgcgtgcct taggacttga gcttggactt agtaaagaag tagtttatcg tcatcctttc
    11581 cctggaccag gtcttgctat acgtattatg ggagaagtaa atcgccctgg cttagaacta
    11641 ttgcgcaagg ctgatgtaat tttacttgaa gaacttaaaa gtacaggttg gtatgataaa
    11701 acttggcaag cattttgcgt acttttaaat gttaaaagcg ttggagttat gggggataat
    11761 cgcacttatg ataatgcagt ttgcatacgc gttgtagatg caagcgatgg catgacagct
    11821 actttctcgc atttacctta cgaagtttta gaaaacataa gtcgccgtat catcaatgaa
    11881 gtagaaggta taaaccgcgt tgtttatgat atctcaagca aaccacctgc aaccatagaa
    11941 tgggaatgat ccattttttc tagcacttat ttttattata aaatttttat aaaaataagg
    12001 ctagaattta ttcaagaaat ttcaaggaag aaatatgcat ggaaaaatag ctatttatat
    12061 ggattctaca ggacgtggaa ccgttacaaa ctcagcaaat accttttttg acttcaatcg
    12121 ccaaatttgg aatgataaaa aaagtatgcc aagtgttggt atgcttgtgg aatttagaac
    12181 tctttctagc gaaaaaaaag cagaagacgg caagcccgtt caaacaagca aaaccataac
    12241 aggtataaaa ccttcaaaat ttcaagaatt taaagaaggg gattttatca ctgagcatga
    12301 tttttggaaa actgacaatg atgatgaatt agaagacttg caaaactcaa gaagaagtgc
    12361 ttatataaca gaactttata gaacaacaga ctttgacact atagaaaaaa ttcctctttc
    12421 ttttactata cctcaagcta tacaaaaata ttttgcccat gaaattttat ccgtagaaac
    12481 gcttcaagcc aatctacaag atgaaaagga aattccttgt atacttgatt atcttatact
    12541 taaaagattt ttatttaaag cttatgatac tttaattttt atggataata gcatagacca
    12601 aacccaattt agcgcattaa aaagcatcat gatgcattta gagaattcgt ataagcaaat
    12661 gatggctgat caaaaaccaa atatcactaa aatttttaac gaaacttttt tatctttgca
    12721 gtgtcattac caagctttag tagccaccat agatacaaga aaaaatcgtc tagcctcact
    12781 tgaagcacaa atgaaaactt tacaatctga aataaatctt aaaagcaatg cgaccgatgc
    12841 agaccctgaa aaacttaaag cacgacaaga aatattggct aaactacaaa aagaagcaga
    12901 atactacaga acaacactaa aaagacttga tgctataagg gaagattttt ataagaaaaa
    12961 ttacaatatt ttcgaaaatg cttttaaact ttcacgagaa aagctcttta aaaaaattgt
    13021 cacaggttta aatctatgcg caaccataat ggatgttaaa atttggcact tgtctttaaa
    13081 atcatcaggg gttaaaaatt cttattttac tatgagtaat atagaaaatt ctttctgttc
    13141 tctttctttt gcagaacatt acttaagtcg cttaaataaa tccgctctaa atccttttga
    13201 tcaaaaactt ttagtgtata ttcaaaaaat cacaaaagaa caaagaaaaa aatttttagt
    13261 tgtcacatcg gatttagatt tattatgcaa attaaaaatt gaaaactttt cacaaaatcc
    13321 gtattattta gtaaaatacg cacctaaaaa agtgaattat cagtctttaa tgcgtgataa
    13381 cacctttgat atagtctata ttgatgaaaa acatgtttgg gaaaatgttg ccgatattat
    13441 tttacaagga aagcattttg acaaatcagg aaaaaccaaa tttaaactga tttaagacat
    13501 agaaatttaa gctaaattaa gttataattt ccttgcctaa acagtttgtg gtatttaaag
    13561 tgatccaaca catttttatt aactgcgatt gtgtgattta ccgtgttctg tggcatcgtt
    13621 tgagctttga aaaaagtgag aagttgcagc ctttaaaaat tacctagcgg ttttctttga
    13681 ctttttgggg tcaatctttg ttaaacggct gtttgggttt aaaaggagat ataaatgaaa
    13741 ataatgattt tgggtagtgg tgcaagagaa tattctattg ctttagcctt aagaagagta
    13801 gacaaaaatt tagagtttta ttttgctcct ggaaatggcg ctaccgaaag tcttggaaca
    13861 aatttaaacc taaaagatcc agtagtttta gcaacctatg caaaagaaaa aggttttgat
    13921 ctttgtatag taggaagtga aagtttttta gctgaagggg ttgtagatat ttttaaacaa
    13981 caaggacttg ctatttttgg gccaagtaaa gctgctgcaa tgcttgaaac ctcaaaatct
    14041 tttatgaaaa gctttcttaa aaaataccgt atcaaaacag ccaaattttt aaacacaaat
    14101 gacattgaaa aagcaaaaaa ttttatatat agtttaaccc ctcctatagt agtaaaagcc
    14161 gatggacttt gcgcaggaaa aggtgttatc atagctaaaa ctcatgaaga agccatagaa
    14221 gaaacagcta aaatgctgag cggagaaagc tttggagatg ctggaaaact cgttgtaatt
    14281 gaagaatttt tagatggtta tgaattaagc atttttgcag tatgtgatgg caatgatttt
    14341 gttttacttc ctgcagcaca agatcacaaa aaattactcg ataatgatca agggccaaat
    14401 actggtggaa tgggtgctta cgctcctagc tctttggcga atgaaagctt gcttagaaaa
    14461 gttcaaaaag atattatttt accaacttta gcaggtatga aaaaagaagg agcggaattt
    14521 tgtggtgttt tatttatagg tgctatgatc gttggaaata aaccttacgt attagaattt
    14581 aacgttcgct ttggcgatcc tgaatgtgaa gttttaatgc ctttaatcga agatccttta
    14641 gagcttattt tagctgctac tcaaagacgc ttaagacact caaaaatcaa aatcaaaaaa
    14701 gaatttgcag taggggttgt atgcgcaagt gaaaattatc cttacaaaag ttcaccaaaa
    14761 agtgaaatta ccgtaaataa cattcctgaa aactctcata tttcttatgc tggagtaagc
    14821 ctagaagatg gcaaattaat ggctgatggt ggaagagttt tagtttgcgt tggcacagga
    14881 aaaagtatag aagaagcgca aaaaaatgct tataaacttt gtgataatgt aaatttcaaa
    14941 ggaaaacaat acagaaaaga catcgctcat caggttctga aatgaaagaa aatttacaag
    15001 accgcttaga gcgtgaaaat ctaaaaatag caagttttgg aaaaagagtt ctagcttttt
    15061 taattgatga tatggttatt tctttgattg tgtttatcat tttttatgat cgtctaatcc
    15121 aagcaaaaga tttatttgaa acaactcaaa ttgtaggaaa tttttacctt ggcttcatct
    15181 tgcttcattt tagttatcaa gcaattttta cttatcttta tggagcaagt ttgggaaaaa
    15241 tattatgcaa aattatcatc ttggatgaaa atcttcttga caaacccaat ctcattcaaa
    15301 gttgcatcag gtctgccgta agacaagtta gtgctatggc gtttatgctt ggatttgctt
    15361 gggctttaag caatgattta cgcaaagctt gggaggatta tctagcaagg acaatagtag
    15421 tcgatgtggc gtaaattttc cctattgcta ggaactagca tagctttaaa tgcagcacaa
    15481 gttgatattt acgctcttga tgcaaaaaaa gaaggtgata ttcttactgc gaacaatgat
    15541 gttattattt tttctgattt ttatttcatc actgccaata aagcaattta caatgaaaaa
    15601 accggagatg ttgagctttt tggcgatgtt aacatcctaa ggggacaaaa cgaaagatca
    15661 cattctgatt atgctaaaat caacctaaat tccaatcaag ccgattttag taattttttc
    15721 ttttccaata acaatcttga agtatggttt caaagcaaaa caagccatct aaatgataaa
    15781 gtctttgaaa gcaaagtttc agcagtttca agctgcaatg ttgaagatcc tgattgggaa
    15841 attcgttttt caaaaggctg gcttaaccgg gaaaccaatt ttgttcatct ttacaatgca
    15901 agattatatg ttaaaaatac cccagttttt tatctacctt attttggatt tagcgctgat
    15961 actcatagac aaagcgggct tttaatccca aaaatcgttt taaaaagtag cgaaggctta
    16021 tactatgaac aacctattta tatagccact caagaaaatt gggatttaga acttgatcca
    16081 caaattcgaa caaaccgtgg ttttggactt tattctactt taagatttct tgattctcca
    16141 tattcaacag gagaattaaa ttttggtgct tttagggaaa atagctccta ttttcacgat
    16201 gaaaatttga aaaatcaaac ccactatgga atagaactaa aatactcaag agatgattta
    16261 atcaaatctt tactcagtga taattttcaa gaaggcctat ggatagatgc aacctatctc
    16321 aacgatgtgg attatttaaa tttaggaagt agggattatc gagatcttaa ctcgcttgta
    16381 acctccaaaa tcaattattt tttagctgat gaaaacaatt tttatggagc ttatgcaaga
    16441 tattatatcg acacatctaa acttagcaac aatacaacct tgcaagaata tccaagcttt
    16501 caatatcata gatttttaaa taaccttttt gatgaacgcc tgcgttattc atttgatgct
    16561 tcatttcata atttttaccg acctgctggt tcttatgcaa atgagctaaa tttagacttg
    16621 cctatctcgt atcacaacgc tttttttgga gactttttac actttacttt tacagaaaga
    16681 ttttatgctt cttttgtaaa ttatagcaac gatcccgaaa gaaaccatga gcattatttc
    16741 agaaacactc atgattttaa tctctacacc gatctttcaa aagcttatga aaatttcttt
    16801 catactttaa atttaggggt gaattacatt ttaccaggag caaaatcagg taaaatcacg
    16861 caagattatc ttgaagaata cgacaaagaa aacgaacata caagtcttta tactgtgcaa
    16921 tatttctata acaacgaagg acaaaaaaaa ctcaaacaca gaatttcact tgactatctc
    16981 aataaacaaa atgaattcta tgaacttgaa aatcttttaa cttattattt taatgaaaac
    17041 atcaatctca acagcgaagt gctttactct tatgagcaaa gtcgctttac caatgtcatc
    17101 agccaaatag aagtcaatac aaattcaaaa tttaattgga tgttttctca tgcttatcaa
    17161 aacgatgagt atggaaaata tagctttatt ggtacaagag caaattatat tgccacacct
    17221 aattacaatt tatttggtgg aatttggttt gatactcaaa gagctcatgc aaacatgtgg
    17281 gaacttggct atacctacca aagaaaatgt tggaactatt ctttaatgta tagagaaaga
    17341 atcgatccac aactcacaag tggtggcatc acagctaaaa atcaaagcgg agtttatttt
    17401 attttcaact tctatccttt aggaggagta aaatacgatt tctctttagc agaaagtgaa
    17461 aacaaaattt aaaaaggatg aaatttgcta aatattttaa aaaattttac gaatttatta
    17521 tctggtaaaa aaggaaaaat aatgcaatac agcatagaaa ttaacaaaaa tacagaaata
    17581 tttgatatag acaaagtcgc caaacaagct gccggtgctg ttttaatgag acaaggcaaa
    17641 agcgttgttc tagctacagt tgcaagagaa gaaaaacaag ttgaagaaga ttttttacct
    17701 ctaaccgtcc aatacatcga aaaagcttat gccgcaggaa aaatccctgg tggttatgtc
    17761 aaaagagaaa ccaagccaag cgatgcagaa accttaacag cacgcattat tgatagaagc
    17821 ttacgccctc tttttccaaa aggctatgct tatccgactc aaatcgttgt gatggttctc
    17881 tcagctgatc ctaaagtaga tttgcaagta atgagcttaa atgccgcaag cgtggcactt
    17941 tatcttagtg atatacctat gaaagctcca gtatgtggtg tgcgtatagg aaagatagat
    18001 ggaaatttca tactcaatcc aaacaatgaa gagcttcaaa atagcaccct agatctctat
    18061 gtagcaggtg taaaagatga gcttttgatg atagaaatga gagccttacc tgatcaaaaa
    18121 gaaaatgaaa tctttatcga agctccttat gctgatgttt taactcaaac cacttcacaa
    18181 aatatgaatg aacttagcga agatgaaatt ttagaagctc taaatttagc tcaaaaagct
    18241 atattaaatg gttcaaatgc ttatgaagaa gcctttagca aacacaaaaa aaattctcaa
    18301 atcgaactaa aaaatgagat tgaacatcct gaaattttag cttttataga aaataatttc
    18361 caaaaacaaa tcaaagaagc catcaatcaa atggcaaaaa gcgaaagagc aagcgaacta
    18421 aataaaatcg ctaaagaaat tttaaatctt gaaattgcta aagactggag tgaagaaagt
    18481 gtcttaaata ccttagctaa agtcaaacgc aaacttattc gtgagcaaat tttaaatgaa
    18541 ggcaaaagag ctgatggtag aagtttaaac gaggttcgtc ctattagtat agaaaccaac
    18601 atcttaccaa acgctcatgg ttcttgtctt ttcactcgtg gacaaactca agccctagtg
    18661 gttgcaacct taggcggaga aaacgattct caaatgatag acttgcttac agaaaaaaat
    18721 cctataagcg aacgctttat ggtaaattat aattttccag gtttttcagt aggcgaagca
    18781 agtcctatca aagctccagg aagaagagaa ctaggacatg gaaatttagc caaaagagca
    18841 ctttatccaa gtgtggatga aaactatcct tatgtaatcc gcttagttag tgaaatttta
    18901 gaaagcaatg gctcaagttc catggcaacg gtttgtggcg gatctttagc cttaaaagca
    18961 gcaggagtgc caagcttaaa acttgttgca ggagtagcca tggggcttat ctttgaagat
    19021 aacaagtatg ctgttttaac agatatcatg ggacttgaag atcatgatgg ggatatggac
    19081 tttaaagtag caggaagcaa agacggcgtt actgctcttc aaatggatat aaaactaggt
    19141 ggaatcgatc aagaaatact aaaacaagct ttataccaag ccaaagaagg aagaattcac
    19201 attctaaata tcatggaaga agccgccaaa gaaatcatag tcaatgaaga agttttacct
    19261 aaacttgagc tttttagcgt tgatccttca aaaatcgttg atatcatagg acaagccgga
    19321 aaaaccatca aagaaatcgt agaaaaattt ggcgtttcta tagacttaga tcgcgaaaaa
    19381 ggtgaagtaa aaatagcagg tagtcaaaac gagcaaatca aagccgcaaa agactacatc
    19441 ataaacatca caagctctca aaaaggaact aaaaaaggcc ctaaagacaa agatatatca
    19501 ggctttgaac ttgggcaaga atttcaaggt attgttaaaa aaatcgctcc ttttggagcc
    19561 tttgtggaac ttaaaaatgg tgttgatggt ttattgcata gttcaaaaat caagcatctt
    19621 aatttaagcg aaaaccaaag tttaaaggtg aaaatcagcg aaattaaaaa cggaaaaatt
    19681 tctgtggatt tgtgcgagtg agtgaatttt taactcatcc ttttgagcct ttttttgaca
    19741 aagattctaa aatcttaatt ttaggatctt ttccttctat taaatcaaga caagatggct
    19801 tttattatca acacccaaga aatcgttttt ggcctatact agaaacactt tttaatgcaa
    19861 aattagaaaa tatcacagaa caacaagcct ttttaagaaa aaaacatatc gctctttggg
    19921 atgtacttca aagttgcaag ataaaaaatt cagatgataa aacaataagt tatgcaaaag
    19981 ccaatgattt aaacctaatc ctttctcaaa ccaaaattca agccattttt actacaggac
    20041 aaagtgctta tagatttttt gttaaattcc accctcgctt agaagccata gccctaccct
    20101 caacttctcc tgcaaattta aatttttctt ttgaacagct tttacaaaac tatgaaataa
    20161 tcaaaaaatt tacaaaataa aagaatattt taatttttta gattttagaa taattataaa
    20221 aatttaagga gttaaaaatg ccttttgtaa atatacgcat caccaaagaa aacggagaac
    20281 ctacaacaga acaaaaacaa gagcttatcg caggagtaac ggatttactt gctaaggttt
    20341 taaacaaaaa taaaagctcg actgtggtaa ttatcgatga aatcgatacg gataattacg
    20401 gactaggtgg aaaaagcatt acccaagcaa gaaaagaaaa aagctaactt acatctagct
    20461 tttgtgtgtt atccttaaat tcaaattcca ctctcttagc cccaaaacct ttagcaatag
    20521 cttctaaagt atccttagca cttttatgga ttttgctttc taaattttgg ataagattta
    20581 aagacaagtc tttaacctca tctttggctt cttttatgag tttgttttta tcactttcac
    20641 taaaactaat ccccgtacta ttgatagaat caggcagtaa aaaaggtaaa aatttagcat
    20701 ttttttcatc ataaaatttc atatctatga tgctgtgttt gtatctacac tctggcatga
    20761 tgatcttata agcatcgtcc cctaaaggca aaatatcaaa gtttttatcc cttaaatcat
    20821 acaagaaagt gatctcaaat tcaaaaatca aagcaatctg tctttcactc aaagaccatc
    20881 ctaaaagatt tttccaaatt ccattaaaag cgctatcttt tttagtgaca atctctttac
    20941 taaaaacttg aaaaacactt aattctccta tggatttaag ttgcatgata tcgctaaaac
    21001 tttgcgtgct tttttcttct attttagggc ttttatactg cctaaaaagc actacaaaca
    21061 aaagcacaag taaaatcatc actaaaacaa ataaaatcat ttccatttta aacctttcta
    21121 aatttataaa ccttgatttg aaaagatata ttttttctca aacgccaaga aaataaaagc
    21181 attaatgata aaaatcaaac acacaaaagt aaaaacaaat tccacgctaa aatgagaagc
    21241 cataagccct ccgccaaaag caccgcaaaa atttcccaaa aattgacaag tttgattaaa
    21301 accaaaaatc acacttaaat ttttagcact cacacttttt ttaagcaagg cattcacaca
    21361 aggcaaaagc cctccaagtc ctacacctat aagtaaacgc acgaaaataa gcgtataaac
    21421 attacttgct acagcctgca agtaaaagca aattccacaa aatatcaaag ctccaaaaat
    21481 aatcttacta ggccctatct tatcggcgat ttttccaagt tttggtgcga aaaaaagatt
    21541 gctaatccca cttgcagcca ccactatacc cgcccaaaga gccaaatttc caccttgatg
    21601 aatttgctca acatagatac ttaaaatcgg catcactcca aaagtaccaa attgtatcac
    21661 aaaagtagtg ataaaaagaa cgatgataag ggttttgttt tctttcactt tttgagtatt
    21721 tttcttcgcc tctttttgaa tttttctctc atggatgaaa aaataaatcg tcacaaaaga
    21781 acaagcgatc aaaaaagcca ccatatcaaa aaccgtacta atactaaaaa attcagccac
    21841 aaagccacca aacaaaggcc caagcaaact tccacttata gaagccgtag aaagagttcc
    21901 taaagcataa gccacttttt ctttaggtgc tatcacagcg ataaacacaa cagcagcaga
    21961 agtaaaacct gaaattatcc ctgttaaacc ccgcacaaaa actacttcta aagcactatg
    22021 agcaaagcta agccataagg ttaaaaccga catcccaaaa cttgcacgaa gaagcatatt
    22081 tttataacca tactttgcac ccaaaaaagc ccacaaaggt gaaaaaacag ccataaaaag
    22141 tggagtgatc ccaaaagcaa gccctgagta aaacgctatt tcactcgtat caacatgtcc
    22201 tagttctttg atataaaaag gcaaaatcgg agcgatttga ctaagcccca tacttgtggt
    22261 aaaaacacca aaccaacaca caagcaaagt tctattgaaa ttttccatgg atttattgta
    22321 tgatattttt tataattttt aattaaaact caaggataaa aatgaaaaaa atactcttta
    22381 tatgcttagg caatatatgc cgttcgccta tggcagaatt tatcatgaaa gatcttgtca
    22441 aaaaagcaaa tttagaaaaa gaatttttta taagcagtgc tggaacttca ggagaacacg
    22501 atggagaagg tatgcactat ggcaccaaaa acaaacttgc tcaacttaac atagaacaca
    22561 aaaacttcac aagcaaaaaa ctcactcaaa agctttgcga tgaaagcgat tttttaatca
    22621 ccatggacaa ttctaacttc aaaaatgttt taaaaaactt caccaacacc caaaacaaag
    22681 ttttaaaaat cactgatttt agtcctagtc taaactacga tgaagtccct gatccttggt
    22741 atagcgggaa ttttgatgaa acttataaaa ttttatccct agcttgtaaa aatttacttg
    22801 tttttttatc aaaataattt aaaacaacta tatattactt ctcgtttact ttttaggctt
    22861 atacttctaa acgaaccgaa aaacattcat aagaaaaact ccttaaaatt acacgcctag
    22921 cttaaatccc tttagctagg cttttcttta gatgttttta tccttcggat ttaaaatttt
    22981 tactatttta agtgcttctt aagaaaaaac tccaaattta tgtgctacaa ttacgatgtt
    23041 ttattaattt ttgacaagga gaattctcat gaaactagtt aaacttagtt tagttgcagc
    23101 tcttgctgca ggtgcttttt cagcagctaa cgctactcca cttgaagaag cgatcaaaga
    23161 tgttgatgta tcaggtatat taagatacag atacgataca ggcacttttg ataaaaattg
    23221 gggaacacca aatggcaatt taaataaaag caaacaaatg cacaaatata gagcacaagt
    23281 taacttcagt gcagctatag ctgataactt caaagctttt gttcagttcg actacaacgc
    23341 tgctgatggt ggtactggtg ttaataacaa aacaaatgct caaaaaggac tttttgttcg
    23401 tcaattatac ttaacttata caaatgaaga tgttgctaca agtgtaatcg ttggtaaaca
    23461 acaactaaac actatctgga ctgacaatgg agttgatggt ttagtaggaa caggtgttaa
    23521 agtagtaaac aacagcatcg atggtttaac tctagctgct tttgctatag atagctttat
    23581 ggagaaagag caaatttcag atttagtagg atcaaacagt agcacattta acgtagattc
    23641 aattggaaat ctttacggtg ctgctgctgt aggttcttat gaattcttag gtggacaatt
    23701 caacccacaa ttatggttag cttattggga tcaagtagca ttcttttatg ccgtagatac
    23761 agcttatagc acaactatct ttgatggaat caactggaca cttgaaggtg cttacttagg
    23821 aaatagcctt gatagcgaac ttgacaaacc tcgacatgct aatggcaatt tatttgcttt
    23881 aaaaggtagc attgaagtaa atggttggga tgctagcctt ggtggtttat actacggtaa
    23941 taaagcaaaa gcttctacaa ttgtaatcga agatcaaggt aatatcggtt ctttacttgc
    24001 aggtgaggaa attttctata ctactggttc aagactaaat ggagatacag gtagaaatat
    24061 cttcggttat gtaactggtg gatatacttt caacgaaaca gttcgcgttg gtgctgactt
    24121 cgtatatggt ggaacaaaaa cagaagctgc taatcattta ggtggtggta aaaaacttga
    24181 agctgttgca agagtagatt acaaatactc tccaaaactt aacttctcag cattctattc
    24241 ttatgtgaac ctagatcaag gtgtaaacac taatgaaagt gctgatcata gcactgtaag
    24301 acttcaagct ctttacaaat tctaagaagc tttcaagtct aacttcaagg cggagttttg
    24361 ctccgccttt ttttatgcct gatttttaaa acttaaattt atataaaaaa ttttcccaag
    24421 ctaaaacgct ttaggaaaat taagacttaa accaattagt gattttttca aaaagccctt
    24481 tttgctcttg atgcatacca tctttgatgc caaaactttc acttagtttt tctaaaagtt
    24541 ctttttgttc atcgtttaaa gaagttggga atttgataga aatttgaacg atttgatttc
    24601 ccatgcgaga actatgaaca tcttttaccc cttctttttc aagaacaaat ctttgtccat
    24661 ctttagcacc ctttggtaaa tttaaggtcg cttcaccgcg tatggtgggt acttttatac
    24721 tctctcctaa gatagcctgg gtaaaaaaca ctggaaattc tatatatata tcatcatcat
    24781 ctctgataaa agtatcatct tcagcggcga tgatcttaac atacatatcc cctctagtac
    24841 cattttttaa gatattacct ttagcattga cacgaagctt catacctgta tctacacctt
    24901 ctgggatatt aagctcgaca ctatctttgc tttcattata acccaaacct ttacaatcac
    24961 tacatttttc actagctttt tctccaattc cttgacaatc agggcaagtt tgtgcaaaag
    25021 tgataaaacc ttgagaaacc ccaacctgtc ctctaccttg acactttgga caagtttgaa
    25081 gctttccatc tttagcccct gttccattac aagttttaca agagcattta taagtaaagt
    25141 ctatattttt cttacaacca aaaaccgctt ctttaaaact taattttaaa ttaacgataa
    25201 aatctgaagg gattttctca tcatttgaac tttttctacg acgtgatgag ccaaagcctt
    25261 ctccaaaaaa actagaaaat atatctccta aatcctcaaa accaccaaaa cctgagctac
    25321 tagaaccaaa tccaccgcct tttaaagcat cttttccgta tctatcataa atagctcgct
    25381 tttcatcatt gcttaaaact tcataggctt cattaacaag cttgaattta tcttctgctt
    25441 ctttatcacc ttggtttcta tcaggatgat attttaaagc catttttcta taggcttttt
    25501 ttatggtttc tttatcagca ttttgcgtga tttcaagaat ttcataataa cttatttcca
    25561 cattattcct tta
//
LOCUS       DAPIWV010000008        25089 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.008, whole genome shotgun sequence.
ACCESSION   DAPIWV010000008 DAPIWV010000000
VERSION     DAPIWV010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25089
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.008"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            32..535
                     /gene="ctf"
                     /locus_tag="RJ272_000220"
     CDS             32..535
                     /gene="ctf"
                     /locus_tag="RJ272_000220"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HDV7381356.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            578..1954
                     /locus_tag="RJ272_000221"
     CDS             578..1954
                     /locus_tag="RJ272_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HDV7381357.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLTLSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            1955..2965
                     /locus_tag="RJ272_000222"
     CDS             1955..2965
                     /locus_tag="RJ272_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HDV7381358.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFVKNSNIKYLVVLLGANDPWDIKKGGSYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKREELNKKIQILNKIYSDEILKNKEIF
                     INTKLFFSVNDQYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            2952..4130
                     /locus_tag="RJ272_000223"
     CDS             2952..4130
                     /locus_tag="RJ272_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HDV7381359.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNRSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKNNNVFLDTIAINGAKSDLWLSWNQEVVKKELELLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(4133..5503)
                     /locus_tag="RJ272_000224"
     CDS             complement(4133..5503)
                     /locus_tag="RJ272_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDV7381360.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMEELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLGN
                     DQNRNLLIKNLQDLLAKQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(5505..7430)
                     /locus_tag="RJ272_000225"
     CDS             complement(5505..7430)
                     /locus_tag="RJ272_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7381361.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(7430..8602)
                     /locus_tag="RJ272_000226"
     CDS             complement(7430..8602)
                     /locus_tag="RJ272_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDV7381362.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVIASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            complement(8681..9871)
                     /locus_tag="RJ272_000227"
     CDS             complement(8681..9871)
                     /locus_tag="RJ272_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7381363.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(9880..10649)
                     /gene="ppk2"
                     /locus_tag="RJ272_000228"
                     /pseudo
     CDS             complement(9880..10649)
                     /gene="ppk2"
                     /locus_tag="RJ272_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002849683.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
     gene            10856..12559
                     /locus_tag="RJ272_000229"
     CDS             10856..12559
                     /locus_tag="RJ272_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDV7381364.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            12556..13224
                     /locus_tag="RJ272_000230"
     CDS             12556..13224
                     /locus_tag="RJ272_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDV7381365.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDVHQIS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            13275..14618
                     /locus_tag="RJ272_000231"
     CDS             13275..14618
                     /locus_tag="RJ272_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7381366.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(14610..15485)
                     /locus_tag="RJ272_000232"
     CDS             complement(14610..15485)
                     /locus_tag="RJ272_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HDV7381367.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(15472..16425)
                     /locus_tag="RJ272_000233"
     CDS             complement(15472..16425)
                     /locus_tag="RJ272_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDV7381368.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            complement(16422..17864)
                     /locus_tag="RJ272_000234"
     CDS             complement(16422..17864)
                     /locus_tag="RJ272_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7381369.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(17959..19023)
                     /gene="fbaA"
                     /locus_tag="RJ272_000235"
     CDS             complement(17959..19023)
                     /gene="fbaA"
                     /locus_tag="RJ272_000235"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDV7381370.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            complement(19023..19844)
                     /gene="peb4"
                     /locus_tag="RJ272_000236"
     CDS             complement(19023..19844)
                     /gene="peb4"
                     /locus_tag="RJ272_000236"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HDV7381371.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            19925..20551
                     /gene="nth"
                     /locus_tag="RJ272_000237"
     CDS             19925..20551
                     /gene="nth"
                     /locus_tag="RJ272_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDV7381372.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            20548..21198
                     /locus_tag="RJ272_000238"
     CDS             20548..21198
                     /locus_tag="RJ272_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HDV7381373.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            21209..21841
                     /locus_tag="RJ272_000239"
     CDS             21209..21841
                     /locus_tag="RJ272_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDV7381374.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            21899..22345
                     /locus_tag="RJ272_000240"
     CDS             21899..22345
                     /locus_tag="RJ272_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381375.1"
                     /translation="MRRLSILLTILIVINITACDSKTENYYKNLPSEAKEKAKEKAKE
                     CKESGTLSEDCINALKVGVKSTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDI
                     NQSSENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            22342..22563
                     /locus_tag="RJ272_000241"
     CDS             22342..22563
                     /locus_tag="RJ272_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDV7381376.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(22553..23263)
                     /gene="cmoA"
                     /locus_tag="RJ272_000242"
     CDS             complement(22553..23263)
                     /gene="cmoA"
                     /locus_tag="RJ272_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDV7381377.1"
                     /translation="MMKDELFKQNPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(23250..24104)
                     /locus_tag="RJ272_000243"
     CDS             complement(23250..24104)
                     /locus_tag="RJ272_000243"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDV7381378.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFMQGEFFELEFISFLRENQKFQDLKKLKNQITKDIEQARE
                     LLRKNDER"
     gene            complement(24070..24831)
                     /locus_tag="RJ272_000244"
     CDS             complement(24070..24831)
                     /locus_tag="RJ272_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HDV7381379.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRANEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYVDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKECAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            complement(24828..>25089)
                     /locus_tag="RJ272_000245"
     CDS             complement(24828..>25089)
                     /locus_tag="RJ272_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381380.1"
                     /translation="VLGNYFLKEQRNNALKSEQEQILLWMNNFNFLKDNNLSLIQKEK
                     DLFEKDLKDLREIFKKNAFEIGIWWFSKEKEDLEKRINESLK"
BASE COUNT         8527 a         4207 c         3241 g         9114 t
ORIGIN      
        1 aaacatttta aattttaata aggagataag aatgctttct aaagaagttg taaaattact
       61 caatgaacaa ataaacaaag aaatgtatgc ggcaaactta tatcttagta tgagttcttg
      121 gtgctatgaa aacagtcttg atggagctgg agccttcttg tttgcacatg caagcgaaga
      181 aagcgatcat gctaaaaagc ttatcactta tcttaatgaa acagattctc atgtagagct
      241 tcaagaagta aaacagcctg aacaaaattt caaatcttta cttgatgttt ttgaaaaaac
      301 ctatgaacat gagcaattta tcacaaagtc aatcaatact ttagttgaac acatgctaac
      361 acataaagac tattctactt ttaatttctt acagtggtat gtaagcgaac aacacgaaga
      421 agaagcactt ttccgcggta tagttgacaa gattaagtta atcggagaac acggaaatgg
      481 actttattta gctgatcaat acatcaaaaa tattgcatta agcagaaaaa aataatcttt
      541 gccctactat gggcaaatct cgctttggat tgaaggtatg acttattttt ctctagaatt
      601 tagtatttta atgatagctt tttttgctat ttattggact tttaaaaatg attacaaaat
      661 acaaaatatt ttaattttaa ttttctctta tattatttat attttaatca atccttattt
      721 cgccttggtt ttatttatat ataccttttt tatacactat tttgccttgc taatttttgt
      781 gcgtcgcaag cgttatattt tcgctacttg catggctttt attattttaa atttatgttt
      841 ttttaaatac tttcctagca tcaaaggaag tgttgatgag atattaaatt ttttcggttt
      901 agaattttta aatattgatt tagtattacc aataggaatt agtttttata cctttacttc
      961 tatcacctat cttgtagaag tttatcaaaa acgccgttta gaaagttttt taaatttagc
     1021 aaccttctta tcattttttc caacattact ttcagggcct attatgcgaa gttctttttt
     1081 ctttgagcag gcctatcaaa aacgcgaatt taaacatgca aatttaatca tcatcttgct
     1141 tgtttttggt atagttaaaa aagttttaat agccaattac cttggaattt atgctaaaag
     1201 tattttagac tttccacaat cttataattt catacaactt ttaagtgcaa tttacgccta
     1261 tgcaattcaa atatactgtg attttagcgg atatgttgat ttagtttgtg cttttgcttt
     1321 aatgttaggt tttacccttc cgcctaactt taacatgcct tatcttgcaa aaaacctaaa
     1381 agatttttgg gctagatggc atatcagtct ttcaactttt ataagagatt atatctatat
     1441 acctttaggg ggcaatagaa aaggaatacc acgcactgta gctaatatac tcatcgcttt
     1501 tatactttca ggtatgtggc atggcaatac acttgctttt attgtttggg gtttgttgca
     1561 tggtattggc atagttttta tacatttgct aactttaagc aaatttagtt tacaaaaaat
     1621 tccagcttta ggaagatttt taacctttca atttgtatgt tttacttgga ttttctttta
     1681 ttatagcaaa aatctagaag atgcaataga atattttaaa gcttgttatt ataatttctt
     1741 ccaaattcca tcttataacg atatctatat gttggttgct tttggggttc tttttatgat
     1801 ctatccttta tttattaatt ttaaagaata ttgcattaag attttaaatc ttactccatt
     1861 tttgctaaaa ccttttatta tagcttttat tttacttttg gtttttgctt ttatgccaga
     1921 tggaattcct gattttattt attcgagttt ttagatgagt gtagttagat ttttctttat
     1981 tttgattata gtgcttggct tggttgttgt agttatgaat cagagtatta gctcttatat
     2041 agaacaaaaa tatcactttg cattctatcc tcataatgat cttttaaaag aagccaatgg
     2101 cttcaaaatt aaattagaac aaattcgtgc aattttaagc aacgaaccct tgcctcaaac
     2161 taatgaagaa actacaaatc aagaaaataa atcaatagat gaaaacttaa gtaaaataga
     2221 taaagttcta aacactttag aaaatgatga aaacacttct cataaagaaa caaatccaac
     2281 cttaatccaa gatgcaaata ttagttttat cgacaatacc aaattagaac tacaaaatgg
     2341 agatgagttt ttatttatcg gagattcttt aatgcaaggt gttgcaatag ccttaaatag
     2401 agatttaaga aatttaaatc ttaaggtaac cgatcttagc aaacaaaata caggcctttc
     2461 ttataaatcc tattttgatt ggtcaaaagc aaccaatgaa gcttttgtta aaaactcaaa
     2521 tattaaatat cttgttgttc ttcttggtgc taatgatcct tgggatatta aaaaaggagg
     2581 aagttatcat cgttttggct ccccttcttg gatagatatt tacacaagtc gtgtagatga
     2641 aatcattaag atcgctaaaa aacataaagc caaagttttt tggtttgaaa tccctcctgt
     2701 aaaaagagag gaactaaaca aaaaaataca aatacttaac aaaatttaca gcgatgaaat
     2761 tcttaaaaat aaagaaattt ttatcaacac taagctattt tttagcgtca atgatcaata
     2821 ctcagcttat ataaaagatg aaaacaatag aagtataaaa gtaagaacag atgatggggt
     2881 tcattttact ccaagtggcg caagagaaat gtctaaactt ttattagaac acataaaact
     2941 taaggaagaa aatgctagta aataaattta aaattatctt attgtttttt attattttta
     3001 ctagctctta tgcacaaaat ttaaatacaa atgacacaat agattccata ctcaatcaaa
     3061 acaaaaatca ctctgcttta acaagttatg tattaaaaaa agatcttaaa aatctagaaa
     3121 aaaaattaga aaaaaatcaa aacataggaa ttagaattta tggagattct catatggcgg
     3181 ctgatttctt tccgcgtgtc ataagaggat atttaatccg ttctaactct ataggttttg
     3241 cctatccttt acagcctaaa tatcaacaaa atcttaatct tgtttattct tataaaaact
     3301 ttgaaatttt aaactcaaga aatcctgcta atgctggaca taattttcca ctaggtggga
     3361 taatagccaa agcaaaaact aaaggcgcaa aaatcaacct tgatacaacc ctagataaaa
     3421 aaaaattcaa aataggattt ttatttaagg ccaagcaaaa taccaatgct tttagcatca
     3481 aagatgcaaa aaatcgaagc tatgagttaa gaactacaca aattaacaaa tggtcttata
     3541 aagaactaga acttgatctt cctttgcaaa tttcagcctt acaaaaggat gctgaactag
     3601 gaggatattt catcacaaat aaaaataata atgttttctt agataccatt gcaatcaatg
     3661 gtgccaaaag tgatttatgg ctctcttgga atcaagaagt tgtaaaaaaa gaactagaac
     3721 ttttacacaa tgatttaatt attcttgcct atggttctaa tgatgcactc tttaaagggt
     3781 ttgaaaaaca aaaatttaaa aacaatttaa aaaaatggat tagtatttta aaaacttaca
     3841 ataaaaacgc tgttatcatg ctaatctctc caccaactgt agttcaaaaa caaggtaaaa
     3901 actacaagct tgctcctgat ttttttacca tacgcaaagc attatatgaa gttgctaaag
     3961 aagaaaaaac tcttattttt gatatgcatc agtttatgca agatagtgga ggaaaaaaca
     4021 aatggataga acaaaagctt tcgctcaatg atgtacatct tactataaaa ggctatgagc
     4081 tgatggctaa aaagttactc gaggatttaa aaaatatcat cgattattaa atttaatact
     4141 taggaaattc taagttttca tcattaaaac ttaaagctgt gatttgatag taagaattaa
     4201 tggtttttaa aagattaaat ctagctctta gaaattcttg ctgggtagaa tttaaagtat
     4261 tgtttgcatc caaataatct tttaattcac tttttcctaa aatatatttt tcataatacg
     4321 ccttagtgat aagctcttgt ttaatgttaa tattttgcaa attttgtaaa agcaaggtgt
     4381 cgctttgata atctttataa ttcaatgcaa attcattcat cgcactttgc aaggcttgct
     4441 cataagaaat taaaagttgc tcataggtaa attgtgaaat tttgatattt tgctttactc
     4501 taccataatc taagaaaggt aaagaaatct taacattgcc acttaaaatt tcaaatttaa
     4561 aactatcatc gattttttta tcacttccgc ttaatgctcc acctaaagaa atactaggca
     4621 aaatagattt ttgcatggaa gaataatcct taaaggctga ttttaagcta ttgagtttag
     4681 atctcacatc tgcacggtac gctaaagctt ttaaaggtat attaaaatca ggacttaagg
     4741 ttttaaaatc atttaaagat aaagttttaa aatactctat ataagcaaaa ccttcttgct
     4801 ttgccaataa atcttgtaaa ttttttatga gtaaattacg attttgatca ttgcctaata
     4861 aattttgttt agctcttaat aagctttgtt ctatgtttaa aagatctaat tcttctattt
     4921 ttccaagctt gtatttataa ttataaagct cttccatttg ttctaaattt gaaagataag
     4981 ctcgaagcaa tttatctaca tcgttaaaat aagccagctc aaacacatca tttaaagctg
     5041 tattgatcat acttattttt aaattttcaa gatcataagc acttgctttt gcactaaatt
     5101 cactcgcact tgcactatct cttaatttgc cataaatatc aagctcatag cttaaattta
     5161 aagaattatt gaaattttta ctttgtttgc ctgaatttaa atctttatcc gcaccaaaac
     5221 ccaaatttcc acttaaagtc ggatataaat cataatcaat caaatcagct ctagccaaag
     5281 ccgaaagcaa agtttttcta gcaatattaa tatcactatt attcaataaa acaaaattta
     5341 gaaattcatt taattttgca ttatcataag atctatacca atcataagta agatttaaat
     5401 ctttcatttg ttcttgagtt aaatcaactt ctttaggcaa gctaagtttt acaccacaag
     5461 cgctcaagaa aaatgctaaa aaaatgctaa gtattatttt cattttattc ctttgataat
     5521 gcactaatag gatttaaatt tgctgcattt cttgcaggga aaaaaccaaa aaccacaccg
     5581 ataaacatag aacttaaaag tcccaaaagc acagaatagg catttaaaat cataggaaaa
     5641 tccgtactta aagtattaaa agcaaaaata acaaaaatcg ataaaatcac acctaaaatc
     5701 gcccctatag tacaaatcat aaccgcttcg attaaaaact gcatcataat atcttctctt
     5761 ctagccccta tagccatgcg tatgcctatt tctcttgttc tttcacttac agaaacaagc
     5821 atgatattca tcactcctat acccccaaca atcaaagcaa tcacagccac acaagcggta
     5881 agtatggttg tagtgcgttt atttgctgta atagcttgct taaaagtgtc agaattaaaa
     5941 gtaaaaaaat ccttttgtcc gcgtttaatt tctaaaattc ttataatagc attttcagcc
     6001 aaagttgaac tcacatcatc tttaacctta actatgattt cacgcaaatt tctatctcct
     6061 gtaagcttat tcatcagtgt tgtatagggt atataaagac gtactacatt atcttctata
     6121 ggcttgtctg tatctttttg caaaactcct ataatcttaa aaggttgaga attaaaaagc
     6181 accacacgac ctaaaatatt ttcacttttt tcatcaggaa aaagattttt tttagcatta
     6241 aaatccaata cagcaacatt ggtactattt tttacatcat cattatttaa aattcttccc
     6301 gcatctatcc ttaaaccttc tatagcaaaa ttatttaccc ctaccccttc agctcttgcg
     6361 cttaaagaaa tattggtata agttgccact cctgaagtat ttgaatgagc atcaactgct
     6421 tctaaatatt ctaaagatct taatgtttct aaatcactaa aattaagcct tgttttaccc
     6481 gaacgcaaat ccccaaatcc ttttccaggg cgaatttcaa tagtatttgt cccaagtctt
     6541 gcaatagact caagcacttt agcttgagag cctaatccta aagctacaac acaaactaca
     6601 gaagcaatac ctatgatgat tccaagcata gttaaaatag aacgaagttt gtgtgcaagt
     6661 atggaagaat aagctatctt aaaacattca aaggcttgat ttttaagcaa agtaagtgtt
     6721 tttttctctt tgggcattgt ttttaaaata agtttttctt gagctttttc ctttttagta
     6781 tcgcttaaaa tttctccatc tttaatctct ataacccttt tagcctgtgc tgcgattttt
     6841 ggatcgtgag ttactaagac tatagtatga ccttgctcgt taagtttttg taaaatttca
     6901 agcaccataa taccgctttt actatccaaa gctcccgttg gctcatcagc caaaataagc
     6961 tctccgccat tgattaaagc tcttgctata gaaacgcgtt gttgctgccc tccgcttaat
     7021 tcgtttggct tagaatctaa cttgtgagct aattctaaat catttaagag ttttttagca
     7081 ttttgacttc tttcttgtaa attttttccc gcataaactg caggtaaaga aacattttct
     7141 ttagcactca gcaagcttaa aagattgtat ctttgaaata taaagcctat tttttcacgc
     7201 cttaatcttg ctttttcatc attattaagt ttagtgactt catactcatc aaaaacataa
     7261 gttccactac ttggcgtatc taatgttcct atgatattca aaagtgaagt tttaccactt
     7321 ccactttgtc ctataatagc aacaaattca cctttttcta tacttaaact tacatttttt
     7381 aaaatggcat tttcgcctat atttttgcaa atatttttaa gaaaaatcat taaaatctca
     7441 acttcatttt aggagctaag ccatcagcac ttgagcttac tatcaattct tcatcttcat
     7501 ttacaccttc taaaatttga gtattgatag aatctttaat gccaagtttg acatattttt
     7561 taacagcttt ttgattttcc aaaatttcaa cataatagcc ttttggatcg cttttaattg
     7621 cataagttgg cactgctaaa acagcctttg cacttgctat gacaatttca ttttgtatac
     7681 tcataccaat acgcaaaaaa tcatctttat tggctacata aaattttgcg taataataaa
     7741 tagcatttga tgagcttgag cttgaagaac tcgaacttga tgagcttgag cttgtactag
     7801 aatcactcac ttcagtatca gctggatcta tacttgcaat cttagcatga taagtttttt
     7861 gaggatcatt aagcaaagaa aaatcaagct ctgttcctac ttttatctta ctcacatcag
     7921 cctctgctat ttccattctt acttccattt cgtctaaatt agctatacgg actatagtag
     7981 gagtgttttg attagcatta actgtttgtc cttcatctac agctacatta atcacaacac
     8041 catccatagg agcagtaatg gttgtataac ctaaatcttt ttgtgcattt ttaagagtga
     8101 tttcaagctg aactacttga gcattaagct ctgcaacatt ggcttttaaa gtataataat
     8161 tatttttttg agtttctaaa ttttcaagag aacttgcttt agctgcataa agtttttgct
     8221 ctctttgata ttgcttattc gcaatctcaa gggcaacttt tttactctct aaattagcct
     8281 tagcactttc aagctgagct tttgtaatat ctaaatcgtt ttgttgttta tctttatcaa
     8341 tttgagcgat caaatcacct tgctttacat gagttcccac atcaacataa agttttataa
     8401 tttgtccact aacttgagca cccacatcga cttgatcttt ggcatatacc tttcctactg
     8461 cctctatggt ttgagatata tctttttttt gtattttttg agttaaatag ctgatttttt
     8521 catcattatt aaaaaaaata aaataagccc caacacttcc aagtattgca attaaaatga
     8581 ttaaaacaat cttctttttc ataataacaa atcctaaaga aaaatcaaga ttaaatttta
     8641 ctcatttttt gtgaattttt tgtgaatttt taattctatt ttataaattt aaaaattcta
     8701 aagccatcat cacatcaccc tgcattaaaa cttttaaatt ttcatcatcc caacaaaaag
     8761 tagaactatg atgcaaagct ggatgattta aatcctttga aattccaaca aatacataag
     8821 cccccattct ttctcgtgtt aaaaaagcaa aatcttcagc ccccatgtca ggtttagaag
     8881 aaacaatgat attttcttct cctaagacct ttgcaaaagc ttttcttgct attaaaacag
     8941 ctttttcatc attaatcaat ggaggaaatt ctttagtata tttaagctta taatctccgc
     9001 cattggattt tgctgtagca gcagccactt cttctaaaga actttttaaa atatcttgcg
     9061 ttttatcatt taaaaagcgc acagttcctt ttaaataagc atttgtagga ataacattat
     9121 aagtagttcc tgcacaaatt tgacctacgg taatcacccc tgcttcataa ggggctaaac
     9181 gtctagaaat aacactttgt atattattta caaattgcgt tgtcataatt ataggatcta
     9241 tacaagtgtg cggatgagct ccatgccctc ctctgccaat aaattccaaa tcaaaaatat
     9301 ccgttccagc catcatttca ccacttacaa tttgagcagt attttcaagc aaaggccccc
     9361 ataaatgaca accaaaaact gcatcaacat aaggattttc caatacacct gattctatca
     9421 taggtttagc tccaccgctt ccctcttctg cgggctgaaa cataaattta atcgtgccac
     9481 aaaattcatc tttaagctca tttaatatca aagcagctcc caaaagccct gctgtatgtc
     9541 catcatgtcc acatgcatgc atcttaccat caatttttga agcatagctt agattagttt
     9601 tttcttgcac aggcaaagca tccatatccg ctcttaaaag aacacatttt ggttttttct
     9661 gactcttctt ttttccttct ataatagcta aaattcctgt ttttgcaata tttttttgat
     9721 atttaatgcc aaactcatct aaaattttac acactaaatg ggctgtattt tcttcttcaa
     9781 attcaagctc aggatgcata tgaatttgat gtcttaaatc aactacttta tcatagtact
     9841 ttagtgctaa attttcaacc agcttttgca ttcttttcct taatctaaat cttttatttt
     9901 ctcatctgct tttttactgt caagtttttc caaattcgcc tccatttttc gtatttcttc
     9961 ttctccacta cgcactaatt ttgcatcaat tttggaaaaa tctccagttt ttttatttgg
    10021 atattctacc ttagaaagta taaaacgcaa taaatttaat cttgcttttt tcttatcatc
    10081 agaagaaata atagtccaag gacaagttgg agtattagat gctaaaagca tagagtattt
    10141 agctaaagta tatttatccc ataattcttg cgatttttga tccacaggag ataatttata
    10201 ttgtttaagt ggatcgcttc ggcgtttttc aaaacgtttt tttgctcgtc ttttgatact
    10261 gaaaaataaa atttaaaaaa aataatatca ctatttgaaa tcatattttc aaacaaaggc
    10321 acttctctta aaaaatcttt atgttgttgc ggtgtacaaa aacccataac cggttctact
    10381 cctgcacgat tataccaaga tctgtcaaaa atcacaatct caccggctga gggcaaatgt
    10441 gctatataac gctgaaaata ccactgtgtt ttttccacat cactaggttt ttcaagagcc
    10501 acaacgcggc aaccacgcgg atttaaatgc tcaatcaaac atttaatcgc cccacctttt
    10561 ccagccgcat cacgcccttc tataagtata agaaccttta aacccttggc tttaacatga
    10621 ttttgaaatt tcaaaagctc aatttgcaaa ttctttaaat ctttttcata cttctattat
    10681 acttttcttt cttttaacag aaacataaat ttcattcttt ttaacaaccg cttgcgtttt
    10741 tggagaatta ttttcttgca ttttcaaacc tttataaagt atttaaagtg aatttaccat
    10801 aataaattat aattgaagct aaaaataaag gaaaaaataa gtttttagga aatttatgcg
    10861 tatttttggt attattttat taagtttttg tttatgtttt gcttctatat tatctttaaa
    10921 tgaagctttt aatgtaaaat caaactctta taataactct atctcaattg atattgaact
    10981 tggaaaagat atttatcttt attctaataa acttaaatta tatataaacg aaaaagatat
    11041 aagttctttg attaatctac ctcaaagttc tacaagaggt aatgaaaatg tttattatca
    11101 aaaattaaat ttagctttgc caaatttatt actagagcgc tttgcaaaaa ataccacaaa
    11161 tttaatcaaa ctcgaatttc aaggctgttc tgaacaaggc ttgtgttata atcctcaaac
    11221 ttggtacttt gatctcattt ctaaaaaaga tgcttttgaa atttcaaaac cttacaaagc
    11281 tcaaaaaaca gataaaaaaa ctaaaattga atctgaagaa agctctatag caaatttttt
    11341 agcaacagat aacttttttt ggattttgct aagttttttt ggctatggac ttttactctc
    11401 cttaacacct tgtattttac ctatgattcc gattttatct tctcttatcg tagcaaaaag
    11461 taatgctaaa ttttcaaaaa aatatagttt ttttctctct tttatctatg tttttttcat
    11521 gtctttagcc tatgctattg ctggagttat agcaagtttt ctaggagcaa gtattcaagg
    11581 aattttacaa aaacctatta ttttaattct ttttgctcta attttcatag cttttgcttt
    11641 tgctatgttt ggagcttttc gttttgaatt gccattaaga tttcaaacct ttatacataa
    11701 aaaaagcgaa aaagggaagg gagttgtagg tatagccatc atgggatttt tatctgcttt
    11761 aatagtaggt ccttgcgtag cagctccttt agcaggtgct ttaatttata tagccaatac
    11821 aggcaatgct ttattaggtg gtagtgcact ttttatcatg agttttggca tgggtatacc
    11881 tttgcttttc ataggcttag gattaggttt tattaaacct ggtttttgga tggaaaaagt
    11941 aaaaattttc tttggttttg ttatgttggc tatggctatt tggatacttt ctagaattat
    12001 tgaagaaaat tacattttaa ttgcctatgg aattttaggt gtatttttta gtgtttttat
    12061 gggaattttt gaaaaaagtt ttacaataat ttctaaaatt aaaaaaagta ttttaattct
    12121 tattttagct tattctctaa gtattttcct aggaggactt tttggggcta aaaatttctt
    12181 aaatccttta aatttcaata ctatatctgc ctcaaaacat gctttaagct atgattatat
    12241 caacaatttt gaacaattaa agcaagaaat acaaacaaat acaaagccta taatgcttga
    12301 ttttactgca tcttggtgtg aaaattgcaa acttttagat gaattaacct ttagtgatga
    12361 aagaatcata caaaaaatgc aaaattacaa acttatcaaa gttgatgtaa gcgaaaataa
    12421 taatgaacaa attaaaacca tgaaagaatt taatgttttt ggcccacctg ttttaatttt
    12481 ctttgaaaat ggaaaagaaa aattaaaaat cacgggtttt atcagtgctg atgatttatt
    12541 aaaaaaaata gaaccatgaa aattcaaagt ttgcaaatag ggaaaattaa aaactataaa
    12601 aatttccaaa gcgcatttat taaagatact tacctagaag aaacacaaat tgattttcta
    12661 ggtgttttag atgatcaaat agctgataaa attcatcatg gaggctacca taaggctatt
    12721 tttgccaact cttgtcaaaa ctatcctata tgggaaagat ttcttaataa aaagctaaat
    12781 tttggctcaa tgggtgaaaa tttgagcatc gatgggcttt gcgaacaaaa tgtttgcata
    12841 ggtgatgtac atcaaatttc aaatgcaata ctgcaagtaa gcgaacctag aaaaccttgt
    12901 gtaaaaattt ctaaaattca caataatcca aattttacac atgaaatttt taaaacgggc
    12961 ttgagtggat ggtattataa agttttacaa gttggacaaa tacgaaagca tgaaaacatt
    13021 aaaattttag aaaaaaattc tacttcactt agtgtatttg aactcaatca acttttttac
    13081 tccccgcatc aaattcttaa gcaaaatccg aatttattag ataaattaga aaaattaaac
    13141 tctctcatat ctcaaaattg gcacgaaacg atacacaaac gcttaaaaaa tacttacgat
    13201 ataagctata tggatagctt ataagttttt aaagttattt ttaggtaaaa taattctttt
    13261 tcgaaaggat aatcatgcaa agacaaacat ggagtagcac actaacttat attctaacag
    13321 ttgctggagc aaccatagga tttggagcaa cttggcgttt tccctatctt gtaggagaaa
    13381 atggtggcgg tgcttatgta ttagtttttt gtatagccat gattatcata ggcattcctg
    13441 ttattttagt tgaaaatgtc ataggcagaa aagcgatgac aaatagcgta gatgctttca
    13501 aacaaaaatg gcaaagtatt ggatatatgg gacttttagg aagctttggc ataatggctt
    13561 actacatggt acttggagga tgggttttag tttatatttg ggaattaacc ctagggaatt
    13621 ttagtcttgc caatgtagta agcaaagaat ttactcatca gttttttaac gacaaaatag
    13681 ccttcaatcc tttaggagtt ggtattttta ccactgtttt tgtaattatt aattatatta
    13741 ttttaaaaag aggcattata gatggtatag aaaaatccgt aaaattttta atgcctttat
    13801 tatttatctg tcttattatt gttgtaggac gcaatttaac ccttgatgga gctatggctg
    13861 gagttaaatt ttatcttgaa cctgatttta gtaaaatttt atcaccaaaa cttttaatcg
    13921 atgttttagg acaagtcttt tttgctttat ccctaggttt tggggtaatg ataacacttt
    13981 catctcatct taataaaaat gaaaatatgg caaaaaccgc tatttataca ggggttttaa
    14041 atactatcat agctgttttg gctggtttta tgatttttcc agcacttttc tcagcgggac
    14101 ttgctccaga tagcgggcct tctttggttt ttgaaacttt acctatagca ttttctcata
    14161 tccattttgg cactattgtg tgtattttat tttttgtctt actcttgatt gcagctttaa
    14221 ccacaagctt gccaatttat caagttatta ttagcgtatt agaagaaaaa tttaaatatt
    14281 ctaaaaatct ttctattaac ctaactctag ggtttatctt catacttggc aatcttcctt
    14341 gtattctaac ttatgggcct tggcgtgata ttgttatcat caaaggaaaa aacatttttg
    14401 atagttttga tttcattagt ggaaatattt tgtttgtttt aactgcattt ttttgctgta
    14461 tttatgtagg ttggatttta ggcaaacaag aaagtctaaa agaacttagc aataacaata
    14521 cacttaaaag ttcatggttt ggaatttggt tttattatgt aaaatatata gtacctttga
    14581 ttattttaat catttttatc tatggaattt taaactgatt ttttaaattt atatctctct
    14641 aacatagtgg aatttcctaa aattccacct tgatgtatat aaagcaatgg ttttttccac
    14701 tcttgtttta atgctatact taatcctaaa atatcataca acaagtcaaa ttctatattg
    14761 cactttaact ttaaatccat ataaagctca taaaattctt tatacggctt agcaaagtga
    14821 tattttttat cacttgttaa aaattctaaa tttgaaaaat catagcttgg atctaatgtt
    14881 aaaatttgtt ttttaagata tttaatatca cctacacaag cgcaagtaaa tactttaaat
    14941 ttagaatact ttgccaaaaa agctgccgaa gtgcctgtac ccgaaggtaa aaaaatatca
    15001 aaatcaagct ttaaactttg actttgcatt tgaatttctt gagcaagttc catatagcca
    15061 tattgagctt ctaaattagc tataccttgt tctataaaaa catcatcttt tttacacaaa
    15121 gacaaagcaa attgctttaa ggataaagaa tggatatttt ctacaaaatc aacaccattt
    15181 tctaaagcta aagcatagtt tccacaagga ttattcttaa gaaaagtaga aattttttca
    15241 caagcaaaaa caagcttata tgatctttgt ttagcaaaaa tacttaatgc cgccaaagca
    15301 ttactttggc ttcctccata acttacaaaa gattgatttt taggatatct ttgatggata
    15361 taaaaagcaa gtttcctagc tttatttcca ttaatttccc ctaataaatc atctctttta
    15421 atataaaatt caaatccgtt aaaattgatt ttttgtatag gactaattgt tttaatgaaa
    15481 ttcaaagaat ttttctacat cttttaaagc attatcattt ttaatgctaa attttatttc
    15541 tatgcgacga ctcttatcct tatcttcaac tccgttgaca aacacgggat ctgaaaaaga
    15601 acgtccactt gccattaaaa gcttttgaag cttatcactc ttataaaaag tatagataaa
    15661 attcatcacc tcataagctc ttttttgcga caaatctaaa ttataaatat aagatccatc
    15721 actatcagta tgtccttcaa taatgatatt ttcaatgtta gaaaaaattt ttggatcttc
    15781 aagaatagca tcaaaatatt cgcttaagat ttttctcaaa cttgcctttg cctcattttt
    15841 taacacataa gaatctttat caaaaagtac ttcagcaggc aaagaaatag atcctgtctt
    15901 ttcatctata gtgatattat tatcaagctt actttgtaat tccttgctta aattttcacg
    15961 aatcaaacca agattttgca ccttttcttt agctttttga aaatcttctt gtaaattttt
    16021 aagctcttca tcttttttct ctagttgacc tagtaaaatc aaaatttgct tatctttatt
    16081 atctaaagtt gagtttaaat ctttacttaa ctgcttgtaa tttgtaatat tagcctctaa
    16141 ttctgctttt tgagaattag caagatttaa agcactagaa gcattgttta aatcagaact
    16201 tagtttaaac actatggctt ctttatttct aagctcttct ttactctcct ctaagcgtgc
    16261 ctcttgttta ttgagattat ctttgatttc ttttaaatca ctttgagtta aaacatattt
    16321 tacaacaata gcacctatta gcaaaataaa aacaaacagc aatcctgcca ttaaatcagc
    16381 ataagctatc caaaaattgc tatcttcttt tgactcattt ttcatttatt ttctttatct
    16441 tcatttttta gctcatcatt gctttcttgc ttagatattt ctgcttgaat ttcatcttga
    16501 ttttcttcag tcttagactc tgaaaaatct tctatttgtt tggtttcatt ttctttattc
    16561 tgattttcat ccccagaaag cttgctcatc atttgacttg tttcttcatc aagtgctttc
    16621 atttcttttt taagctcatc catcattttg attttagcat caatactttt ttcttcttca
    16681 tatacttctt taaatttatg cataccttca aacaagcttg ctttaaatcc ctcaaaaacc
    16741 ttttcttgac tttccaacat tgctttttca taaagttcaa aatttttacc aaaacgctct
    16801 attttttcat cgaatgcact tagtgtctta tcaagatgat gaattttatc actactgata
    16861 tcgagcaagc gattatattg ttctgacatt cttgtattga tttcttttaa attttgattg
    16921 agcaaaccta taccatttaa catttcacta taaagctttc caagatcgcg ttgatctctt
    16981 tgtgctttac taagctcacc catggtttgt ttgatatgtt cactacttaa tctaatagcc
    17041 ttttcttcta catttagcat atcttggaaa ataccaaatt ttctatcaat agcatgatca
    17101 agctctgcaa aaaaatcatc attactaact tgtttaaaaa ttgctccaat tttttcaaaa
    17161 tgttgcaaac tttcagttaa atatctttga tcaagctctt cttttgtcca aaaaaatcca
    17221 cttgtagcgt ttttttgacg atttagcaaa cgatctattt tgcttttacc atatttttca
    17281 aaaaacatcc accataatgc aagaaaaatt ccataaattg aaacataaaa agcagttccc
    17341 actccactta acaaatctgc aatttcttgt tctaaagcgg ctgtatcact agaactaaaa
    17401 tttggcattg aaaaagctat actgataaaa gttcctaaaa ttcccatcat tggaaaaatt
    17461 gccgaaccta tactagcaaa attctcattt cttgcaccct taatatatgt ataagcaaag
    17521 tcatcaaaat tggcatttga tttcgtgtct ttccctatgg caagaaaatg cctcataata
    17581 tgtcttttta aagcctgttt aaattcatct ttttgttgtt caaaaatact atacgcatac
    17641 tcagcactat gtctagcaaa aatcaatgct gtaaaaaaaa tcacacctgt cataataacc
    17701 gtatgtaatt cgaccttaaa gtcaattaca ttaaaataac ccaataaaat caaaatataa
    17761 agaaaagctg gaataaaaat aattttaaaa taaaccaaag aacctcttgc atctttgcct
    17821 tcaggcaaaa caagttctga aatttcatct gatttaatat ccatgaaacc aatacctcat
    17881 taaaaatttt attttaaaga ttgctactta atttgataaa aatttttaaa acaaaataaa
    17941 actaagcttt taaaatgctt agtttttgtt tatacagttt aaatcttcaa aagcgatttc
    18001 aagacgtttt atcatgcttt cttcaccgct tcttaaccaa acacgcggat catagtattt
    18061 tttatttggc ttgtcatcac cttctggatt tccaatttgt ccttgcaaat aagccctatt
    18121 tttaagttca tattcacgca ccccatccca aaaagcccat tgagtatctg tgtcaatatt
    18181 catcttaatt acgccatagc ttactgcatt tttaatatct tttagctcac taccgctacc
    18241 gccatgaaat acaaaattta taggcttatc gctatttaaa gcaaatttat cttttacaaa
    18301 tttttgcgaa ttttttaaaa tttcaggttg taagctaaca tttcctggct tgtaaactcc
    18361 atgtacattt ccaaagcttg ctgcgattga aaatttatca ctaatttttc caagtctttc
    18421 atatgcaaga gctacatctt ctggttgggt ataaagcttg gaattatcaa tacctgtatt
    18481 atccactcca tcttcttcgc cacctgtaca acctaattct atttcaagcg cgacacctaa
    18541 agcatcaagt ttttgaagat aaacttcaca agtgctaaga ttttcttcta aactttcttc
    18601 gctaagatca agcatatgag aactaaataa agcttgtcca tgggtttttt tatattgtgc
    18661 atttgcctca ataagcccat caatccaagg caaaagtttt cttgcagcat gatcagtgtg
    18721 taaaatcaca ggtacaccat aagctttagc aagtaaatgt acatgtttag ccccactaat
    18781 tgcacctaaa acttctccat taggacaatt tttccctgca taaaattttg ccccaccatt
    18841 tgaaaactgg ataataactg gagagttaac tttttttgca gcttctaaaa ctgcattaat
    18901 agaatcagtt cctacaacat taacagcagg gatagcaaaa ccctctgctt tagcatagtc
    18961 ataaatttta ttaagctcat ctccgctaat cacccctgct tttacaatgt ctaaaacacc
    19021 cattatttat attccacttt agcactattt aagagatctt ggcctttttg attgataact
    19081 tttttaaatt cttcaaattt aagtccgttt tcaatacctt gttttacttc atcaaatttg
    19141 atttgacctt tagcttgcga attttctttt aagattacat gataaccaaa attcgttttt
    19201 accggagttg tagtaatagt accattttta agcgcgaaag cagcatctgt aaaaggcttt
    19261 accatagttg attgatcaaa ccaaccaagc tcaccacctt ggttttttga acctggatca
    19321 attgatttct ctttagcaag ctcgctaaat ttagcatcta gttctttacc ttttaaacct
    19381 ttaagttcgt taataatatc cttagcttct ttttctgtcg ctactaagat atgttttgct
    19441 tgcactcttg caggttttac atatttgtct ttattttgat cataaaaagc tttaacttta
    19501 gccgcatcaa ttttaatagt atttaaaatt ttctcttgat aaacattaac aagtattgca
    19561 tcttttgcac gatcaagttc ttttgtgtat aaagggtctt tttctaaatt ttgtttttta
    19621 gcatcttgca aaattaaatc ttgcataata tattgctgaa taagagcttt tttttgatta
    19681 tctggcaaag ttttaaaatc ctgtcctcta agcatagggg caaaaaattc acttacttct
    19741 gtatcgctaa tgctcttgcc attaacagta gctactgtag ctgcatttac atttaaaact
    19801 acacctgcaa tcaaagttgc tgcgactaaa gaaaattttt tcattaggtt tcctttttaa
    19861 taaaatgtat ataaaatcaa ttatatctaa acttggttta aagctaatta actaaaatta
    19921 aaaaatgaaa agaaatttag aaatcaaaga acttttttta aaacattttg acaagcctgt
    19981 aacagagctt aaattttcaa atttatatga gcttttagtc tgcgtaatgc tttcagccca
    20041 atgcactgat aaaagagtta atctcatcac tcctgatctt tttaaagctt atcctgatat
    20101 taaatccctt gcaaatgcaa atttatcaag tcttaaaacc tatatacaaa cttgttcatt
    20161 ttttaataat aaagcacaaa atcttataaa aatggcaaaa gcagtttgtg aaaattttga
    20221 cggagaaatt ccccttgatg aacaaaattt aaaatcctta gcaggcgtag gacaaaaaac
    20281 cgctcatgta gttttaatag aatggtgcgg agcaaatttc atggctgtag atactcatgt
    20341 ttttagagtt tctcaccgct taggacttag caaagcaaaa actccagaag ctacagaaga
    20401 agatttaaca cgcacattta aagataatct taactatctt catcaagcca tggttctttt
    20461 tggacgttac acctgtaaag ctaaaaaacc tttatgtaaa gaatgctttt taaatcatct
    20521 ttgcaaaagt aaagataagg aacttaaatg aaaattttca tctttttact cactatatct
    20581 cttaatattt ttgccttaga accttacaag cctagtgctg atttttcttc ttattttaac
    20641 aatataaatt gctcgcaaat cttagataag tttttttatc taaattgcta tgattataaa
    20701 ctcaaaggca caaaagctgt tgcttataag gtagaagctt caaatttgaa agatagacaa
    20761 atcaaaaaac gccctcgctt tgaagatgat acaaatattc ctaaaaaata ccgcactact
    20821 tggagtaatt ataaaaacag tggttacaca cgaggacaca ctgcgcctaa tgcttctttt
    20881 agctttagta aagctgctca aaattcagta tttttaatga gtaatattac cccacaaaat
    20941 gcacaaataa ataataaaat ttggaatgaa atcgaacaaa gagaaagaaa tttagcttta
    21001 gaatttcaaa gtatcgaagt tttaaattta gtactttacg ataaagaacc acaatacatt
    21061 aaaaaccgta ttgctatacc aagtttttat gtgaaaatta ttaaaactcc gaaatttaaa
    21121 gaatgctatc aagcaccaaa ccacgaagta aatgatgaaa atattaaaca gtatcaaata
    21181 aattgtgata aattttaagg tataaattat ggagataaat gctcttacga taaccactct
    21241 ttatatcata ggtatttccg cagaaggaat gacaggagct ttagctgcag gacgccacaa
    21301 aatggatctt tttggagtta tttttattgc tctcgtaaca gcaattggag gcggaagcat
    21361 acgagatgtg cttttaggac attatccttt aacttgggtt aaacatcctg aatatattat
    21421 tttaatctgt ttttgcgccc ttgtagccac aaaaattccg cgcgtagtaa ccaaacttga
    21481 aactttattt ctaactcttg atgctatagg acttgttgtt tttagcatac ttggagctca
    21541 aatagctata gatcaaaacc atggctttat catagccgtt gctgccgctg taattaccgg
    21601 tgtttttggt ggaattttaa gagatatttt atgtatgaga atccccttgg tgtttcaaaa
    21661 agaaatttat gcaggaattg ccataattgc aggagcaatc tattattctc taataatttg
    21721 gcttgagctt aatgccctag tttgcacact tttaactctt tttataggag tttttgcaag
    21781 gcttttagct atcaaatatc aatggtcttt acctattttt tcttacaatg aagaaaaata
    21841 atttatcgtt gctttataca agtttgctaa gatattaaaa attttaggag attgataaat
    21901 gcgaagacta agtattttac ttacaatttt aatagttatt aatataacag cttgtgatag
    21961 taaaacagaa aattactaca aaaatcttcc tagcgaagca aaagaaaaag cgaaagaaaa
    22021 agcgaaagaa tgcaaagaaa gcggaactct tagcgaagat tgtattaatg cattaaaagt
    22081 tggtgttaaa tcaacaaatg aagagggtaa atacagtcca aacacaccga aaaaatctga
    22141 taatcaaata ttagaagctt taaaacaaaa tgatttaaaa aaagaaaaaa ccacaaaaga
    22201 tattaaccaa agttcagaaa ataatgaaag tattataata ccacctatag cagaaacacc
    22261 ttctgaaatt tatccttcca aaacaacaga aaacaatcaa agttctatct ttagcgatga
    22321 tgttaatatg acacaggaaa aatgaccatg aaaataactc tttttttaag ccttattggt
    22381 atattttttg cagcatgcga acaaaccaaa agtgtagaat attatcaaaa tcaccccgag
    22441 gaagcaaaaa aaagaagttt agaatgcaga cacaaagcta tcattagtca agattgtgtt
    22501 aatgcatata agataggttt cccaaaagat gaatgggaag atgaaaatat ttctaatcct
    22561 taaaagctat gaaagtttca aaatttgccc atttaaaaat actttctatt ttcttaaaac
    22621 ctgccttttc tagcatattt aaattttctt tttgactata aggaattaaa acattttcca
    22681 aagcttctct tttagctgcg atttcaaact tagaatagcc ttgtttttct ttataatcag
    22741 cataaagttc tatgatattt ttagacaaaa aagcatcttc ataaaggatt ttttcactca
    22801 taatcaaaat gcctttagag tttaaatttt tataaatttg atcaagcaat tcttgtcttt
    22861 taggaggacg aataaactgc atggtataat ttgctacaaa aacatcgcaa gtaaaaaaat
    22921 caaattcgca taaattagct tcaaaaaaac ttatatcaag cccataagct ttagcttttg
    22981 attttgcaac ttcaagcatg gaagcagaat tatccacgcc aaaaagttta aaatcctttc
    23041 ttagatttgc caaaaaaatc aaaaaattag cacttgagca gcccaaatcg caaacacttg
    23101 catttgtagg taaaatttta gccaataaat tgccacaaag ttctaaattt tctctataaa
    23161 atggtacaga acgattgatc atatcatcaa aaacactagc cacgctttta tcaaattcaa
    23221 attgtttttt agggttttgt ttaaaaagtt catctttcat catttttcct taataattct
    23281 ctagcctgtt ctatatcttt agtaatttga tttttaagtt tttttagatc ttgaaatttt
    23341 tgattctctc ttagaaaaga tataaactcg agttcaaaaa actctccttg catgaaattt
    23401 tcacccaatt cttctaaaat atgactttct atagcaaaat tttcatcgct tgatcttaca
    23461 cctaaaaaac tcacactttt ataagttttt ctttgacttt ttaacaaagt agcgtaaaca
    23521 ccattttgag gcaaaaaata accttcgcaa tctaaattta tagttgcaaa aagttcttta
    23581 gaacctaagc cttgtccttt aattaccttt cctttgatgc tataatttct ccctaaaaat
    23641 tcttttgctt tttgcaaatt tgctcttgat aaaaaatcct taattaaact tgcatgaaca
    23701 cctattccac ctatgctaaa ttcatcaact attatagttt ttatcccact taaaaactca
    23761 atatctttag cactataagc cctatttttc ccaaaagaaa aatcataacc cacgactata
    23821 aattttaaac tggtaaattc ttttttcaaa aagcttaaaa aatctttacc atctaaagat
    23881 tttatacttt caaaatccac ttctataact ttttttcctg aaatttcttc tttttgacga
    23941 tttgaacaaa gaaattgacc tttaaattta ttaataacta gcaaagcccc attctcatct
    24001 aaatatttta caagttttag atgtcctaaa tgcataccat caaaacaacc tatggctaaa
    24061 gaagtaatat taatttttga tatagtagta aaaatattca acattacctt cctttccttt
    24121 aatgcttgat ttttgcgtat tttttaaaag ccaacctaac ttagcacatt ctttttcaaa
    24181 atccattctt gcttttaaga ttgccttgtc atcttttaaa acaccttttt tatctctttt
    24241 gatatttttt cccacttcaa actgaggttt aaaaagtaaa ataatttcct ttaaagctaa
    24301 attatcgaca taataaagta aattaataag agaaataaaa ctcacatcac aagtaacaag
    24361 ttcaaatttt tcttcacttt taaaggctct aagatctgta ttttcatgca agataatttt
    24421 ttcatttgct cttaaacttg gatggagttg attactaccc acatcaagag cagtgatttt
    24481 taaagcctga ttttcaagta aaatttgaac aaaaccgccc gtactagatc ctatatcaag
    24541 acaattttta tgttttattt caatatcatt ttcttctaaa aattttttta atttcaaagc
    24601 tgctcttgaa acataaattt cacttaaaag atccaatttt aactcattgg ctaaaagtat
    24661 atcttcagga tttaaatctt gcgttttttt taaattttct aaaaaatttt ttacatcaaa
    24721 agaagcttta aaactcttac cattaagtaa aatctcttca ttttctataa gctctaaggc
    24781 tttatttcta ctgatattta aacgctttga aacaaaaaaa tcaaatctca ttttaaactc
    24841 tcatttattc ttttttctaa gtcttctttt tctttagaaa accaccaaat acctatttca
    24901 aaagcatttt ttttaaaaat ttctctaaga tctttaagat ctttttcaaa aagatctttt
    24961 tctttttgaa ttaaacttaa gttattatct tttaaaaaat taaaattatt catccataaa
    25021 agtatttgct cttgttcgga ttttaaggca ttatttcttt gctcttttaa aaaataattt
    25081 cctaaaacc
//
LOCUS       DAPIWV010000009        24881 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.009, whole genome shotgun sequence.
ACCESSION   DAPIWV010000009 DAPIWV010000000
VERSION     DAPIWV010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24881
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.009"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            142..504
                     /locus_tag="RJ272_000246"
     CDS             142..504
                     /locus_tag="RJ272_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7381381.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVVKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            508..1948
                     /gene="dcuC"
                     /locus_tag="RJ272_000247"
                     /pseudo
     CDS             508..1948
                     /gene="dcuC"
                     /locus_tag="RJ272_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            1961..3125
                     /locus_tag="RJ272_000248"
                     /pseudo
     CDS             1961..3125
                     /locus_tag="RJ272_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            3135..4502
                     /locus_tag="RJ272_000249"
     CDS             3135..4502
                     /locus_tag="RJ272_000249"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7381382.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQSARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            4511..5851
                     /locus_tag="RJ272_000250"
     CDS             4511..5851
                     /locus_tag="RJ272_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HDV7381383.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKNTPIWVNDQKLDPIYAAMLDSIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVSKDAKKIIKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASRVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELSKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLESYENLKREEVLEFAKKISYKKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNTKANKILDQIINLENLNHFSF"
     gene            5933..6157
                     /locus_tag="RJ272_000251"
     CDS             5933..6157
                     /locus_tag="RJ272_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HDV7381384.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            6154..7974
                     /gene="feoB"
                     /locus_tag="RJ272_000252"
     CDS             6154..7974
                     /gene="feoB"
                     /locus_tag="RJ272_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HDV7381385.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKSPEKEDLLYFINQLSKKIITHKKEERNLTKKIDA
                     LLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASAL
                     ADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPL
                     ITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNY
                     LFGIYILGAILGLFAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLIWFMVYNKAKMYL
                     KKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLEL
                     DWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILF
                     VMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAF"
     gene            complement(8003..9496)
                     /locus_tag="RJ272_000253"
     CDS             complement(8003..9496)
                     /locus_tag="RJ272_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7381386.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILAKHLS
                     LGNEIPVLAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILDKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANISSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(9500..10324)
                     /gene="fabI"
                     /locus_tag="RJ272_000254"
     CDS             complement(9500..10324)
                     /gene="fabI"
                     /locus_tag="RJ272_000254"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HDV7381387.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(10328..10999)
                     /locus_tag="RJ272_000255"
     CDS             complement(10328..10999)
                     /locus_tag="RJ272_000255"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDV7381388.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(10996..12198)
                     /locus_tag="RJ272_000256"
     CDS             complement(10996..12198)
                     /locus_tag="RJ272_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDV7381389.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(12201..13199)
                     /gene="gap"
                     /locus_tag="RJ272_000257"
     CDS             complement(12201..13199)
                     /gene="gap"
                     /locus_tag="RJ272_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDV7381390.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGVQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            13259..13804
                     /gene="nadD"
                     /locus_tag="RJ272_000258"
     CDS             13259..13804
                     /gene="nadD"
                     /locus_tag="RJ272_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HDV7381391.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALGKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            13832..14158
                     /gene="rsfS"
                     /locus_tag="RJ272_000259"
     CDS             13832..14158
                     /gene="rsfS"
                     /locus_tag="RJ272_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDV7381392.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(14190..14567)
                     /locus_tag="RJ272_000260"
     CDS             complement(14190..14567)
                     /locus_tag="RJ272_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HDV7381393.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(14614..16002)
                     /gene="pgmL"
                     /locus_tag="RJ272_000261"
     CDS             complement(14614..16002)
                     /gene="pgmL"
                     /locus_tag="RJ272_000261"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HDV7381394.1"
                     /translation="MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNR
                     GCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANV
                     MITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLY
                     VKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAP
                     DPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPN
                     PRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRY
                     FGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKE
                     IEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVF
                     TLFNDIKARFKN"
     gene            16105..16641
                     /gene="fliL"
                     /locus_tag="RJ272_000262"
     CDS             16105..16641
                     /gene="fliL"
                     /locus_tag="RJ272_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HDV7381395.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            16641..16988
                     /locus_tag="RJ272_000263"
     CDS             16641..16988
                     /locus_tag="RJ272_000263"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HDV7381396.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAVV"
     gene            complement(16989..17408)
                     /locus_tag="RJ272_000264"
     CDS             complement(16989..17408)
                     /locus_tag="RJ272_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381397.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(17405..18766)
                     /locus_tag="RJ272_000265"
     CDS             complement(17405..18766)
                     /locus_tag="RJ272_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HDV7381398.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(18763..19884)
                     /locus_tag="RJ272_000266"
     CDS             complement(18763..19884)
                     /locus_tag="RJ272_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HDV7381399.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHTFNIKADLSKIE
                     KNEQFPFFKISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(19956..21140)
                     /gene="kpsS"
                     /locus_tag="RJ272_000267"
     CDS             complement(19956..21140)
                     /gene="kpsS"
                     /locus_tag="RJ272_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HDV7381400.1"
                     /translation="MRFNTKIKKEFSGKNVLLLQGPVGNFFHHLAIRMEKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(21137..23164)
                     /locus_tag="RJ272_000268"
     CDS             complement(21137..23164)
                     /locus_tag="RJ272_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDV7381401.1"
                     /translation="MLNGYYFYVNNFIQIFYKKKFYGWGRKRTGRYAFLFHKKFGGSL
                     ILFEDGFIRSLNLGVENSPSFSIVKDDIGIYYDATMPSKLENLLNTYEFKDEEIKQAK
                     KAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKDFKTVDMI
                     KDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLSKECILITENFNPIALLEFFDKVY
                     TKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYA
                     EYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEI
                     IFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDEDLLHFTPKISLVEDG
                     FIRSISLGSDLTRPFSLIIDDKGLYIDPNKASKLEELLQNEIFDENILNRAKNIIKIL
                     LENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSK
                     NQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIVKDCSIDSAIKIADEIHTITSTS
                     GFDALLRAKKVFTYGMPFYAGWGLTKDKHKCKRRTRKLSLEELVAGALITYPRYINPK
                     TKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK"
     gene            complement(23158..24168)
                     /locus_tag="RJ272_000269"
     CDS             complement(23158..24168)
                     /locus_tag="RJ272_000269"
                     /inference="COORDINATES: protein motif:HMM:NF024914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7381402.1"
                     /translation="MNNVLKIALIADELTYASLKEEDGVVLRNVTPINYKVLFYFWKP
                     DFLFVESAWHGCKNKWKYQIASYPDYPKRNNKKLQKCVDFAKTLNIPTVFWNKEDHVH
                     FDRFIESAKLFDFIFTVDENCISKYKSYVGENSFVGVLPFAVQSKFHNFTGFNFTLNK
                     ANFVGSYSRHIHEKRRFYQDMMFKLSSEINNLDVFDRNSNRKSTNYRYPIFKGMQIYP
                     SVEYKKTAQIYKKYLISLNVNTIENSPTMFSRRLIEIIACGGIAITNHTSAVEKYFKD
                     YCYSFQTEKELRNMLYKFQKNGLSEDDKIKLKNGAEFIAKNHTWKQRLEQIVDTIGIK
                     KC"
     gene            complement(24203..24832)
                     /locus_tag="RJ272_000270"
     CDS             complement(24203..24832)
                     /locus_tag="RJ272_000270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381403.1"
                     /translation="MQSYLDYFEKSNEWVRKEFFPFKERLFQKQDLSNYKENYKLKEM
                     KSEYWDKIAEFILDVVKTKDKIIEGKDIIIQSKIMQFNQIQTKLFFQVKYGTAKSRIQ
                     NQLSYKLGQTMIVNSKSFLGYLIMPIALLSTVVSYRQYQKIYQEKIKKDFSLKLPSLK
                     QYPDYQEAIKLKNHISYKLGEALIKAHKNWYGGGGYIKFLFEIYKLRKK"
BASE COUNT         8539 a         4220 c         3477 g         8645 t
ORIGIN      
        1 ataatattaa attctactct ttatacttta aaacatttct taaaaataaa attttattat
       61 tatgataata aactattgac aaattattat tgtagtgata aaatgcattc tgcttaatct
      121 atatttaaca aaggagaatt catgtcaaac tatccaaagg ccattggtcc atactcagct
      181 tacagagaag taaatggact tttatttata tcaggacaac ttcctatcaa ccctgattca
      241 ggcgaaatag aaagccatga tatcaaagaa caaaccaaac aatctttgaa aaatatcggt
      301 gctatcttag aagaaaatgg tatcagttat gataaagtgg ttaaaaccac ttgcttttta
      361 gctgatatta atgattttgt agcatttaat gaaatttatg ctgaattttt taaagctcct
      421 tatccagcaa gaagtgcttt tgcagtaaaa gatctaccaa aaaaagctaa agtagagata
      481 gagatcatcg ctcaaaaagg ataaaatatg ctaggtattg ttttttcttt atttagtgtt
      541 tttttacttg tttttatgct ttataaaaaa atcaatgctc acatggcact gcttttaagt
      601 ggtttgcttt tactttcctt agctgctatt tttggacttt ctccacacat tgttaccaaa
      661 gattctttaa atctaggttt ttttgatatt tttcaagttt ttaatcaaac catgtcaagt
      721 acattagcag agcttggact tacacttatg actatagcag gtttttctgc ttatatggat
      781 catgtagggg cttcttatgc actttttaaa gtttttgaaa aacctttaaa agccgtaaaa
      841 tctccttatg ttttactcat agttgcttat tttatcgtgc aatttttagt tcttttcatc
      901 ccttctcacg caggcttggc acttttactt atggttacta tgtatcctat acttgtacgc
      961 tctggtgttt caaaactttc tgccttaagt gtgattgcta tttgtcaata tatcgatcat
     1021 ggacctggaa gtggaaatgt gatcatggcc tcagaaaaag ctgaagttga tcctgcaatt
     1081 tattttgttc attatcaact ccctacaacc ttgcctatca ttatagctgt aagtattgca
     1141 atatatcttt gcaataaatt ttttgacaaa aaagataatt ttgtcttcaa tgcgcaagaa
     1201 attgaaaaaa gaactaaatg aaaatgaagg taaagaaaaa gaacttaaaa agcctcctag
     1261 aatttatgcg attttaccta taattccttt ggttttaatc ctaggattta gttccgtgct
     1321 tgatagcatc ttggttttaa tgggaataag tagcgctgaa gaagttaaag cagctgctag
     1381 cactgcaatt aaaatgaatg ttccagtagc aatggtgatt tcaacttttg tggctattat
     1441 ttttgaaatg atacgctata aaagtatagt agaaactctt aattctatga tgattttctt
     1501 taaaggaatg ggacatttat ttgttatcac agtttcactc atcgtttgtg gtcaagtatt
     1561 tgcaagtggt cttttatctg taggttttgt agatacttta atagaatttt gcaaaaatgc
     1621 aggatttgga gttttggcta ttattatcgc tgtttcaatc ttacttgcgg tttgtgcttt
     1681 cttaatgggt tcaggaaatg cggcattttt tagctttgcc ccacttatcc caaatatagc
     1741 aaaacacttt ggagttgaaa ctatcactat gatagcaccg attcaaatca tgacgggctt
     1801 tggaagatgt gttagtccta ttgcactagc gatcttagct atctcagcta ttgcaagagt
     1861 aagtcctttt gccgtggtta aaagaacagc tattcctatg cttgtagcgg ctattgtaaa
     1921 tgttattatg acttatatct atctttaaaa aggagaaaaa atgaactcaa aaactaaact
     1981 tattcattgt ggcagaggcg atcaaggcgc tgaagtaaga tcagtcaatc ctacacttat
     2041 gcgtgcatca accatacttt ttaaagatca cgcaacttgg caaaaataca gaggattaag
     2101 aaaaacagat cgtgttttaa gttatggagc tagaggaaca acaaccaatt ttgaacttga
     2161 aaaacttatt tgcactctag agggtggtta tagagcacaa cttttcccaa caggacttgc
     2221 agcattagct atggtgcttt taaactatgc aagcaaagat acacattttt taatcactga
     2281 tgcaatttat gggcctgtaa gaacgatttg cgaattattt ttagaaaaaa tgggcattga
     2341 aattgatttt ttaaaagctg atgcaagtga tgtagaagaa aaaaatcaaa cctaatacca
     2401 agcttatcct atgtgaaagt ccaggttcta tactttatga aatcatagat ttaccaaaac
     2461 tttgcaaaat tgcccatgcg cataatatcc ctgtagctat tgacaatact tattctagtg
     2521 gatattttct aaatccttta gaacttggag tggatatttc agttatcgcc gctacaaaat
     2581 atcttagcgg acactctgat gtaaccatgg gtatagtagt aatcaacgaa aaagaatgga
     2641 aaaattttga caaacttcca gaagctttag gctttacaac aagtcctgat gatgcttact
     2701 tagtacttcg tggtatgaga acactagatg taagaatgaa agcccatgaa aaaagtgctg
     2761 atgaaattgt agagttttta caaagtagaa aagaaattaa aacaattttc tatccaaaac
     2821 tcaaatccca ctcaaatcat gaaattttca tgcgtgatca taaaggtgca aatggcatga
     2881 ttaccataga atttgcagaa ggttataaca aagaggatgc tattaaattt gtagataaac
     2941 tagaatactt ttcaattggt gctagctggg gtggatatga aagcttggcc accgtaacta
     3001 ctccacctag aactgcaaca gacctaagtg caagaggacc atttgtaaga tttcatatag
     3061 gtcttgaaga tactaaagat ttaattgctg atttaacaca agcttttgat agtattaaaa
     3121 aataaggaga taagatgaca ggaattagcg tatttgatca tagattacta gcagactcat
     3181 ggagcacgca ggaaatgcgt gctatttttt gcgaacaaaa ccgcatacaa aaatggctcg
     3241 atgttgaagc agctttagca aaagcacaag caaaacttaa aattatccct aaaaaagcag
     3301 ctgatgagat cgcaaaaaaa gctcattata aatttatgga tatggacttt atctttgctg
     3361 aatttaaaaa gaccaaacac cctttagttc ctactgtaag aggattagaa aaagcttgcg
     3421 ataataattt aggcgaatat gtacattttg gagtaaccac tcaagatatc atcgatacag
     3481 gactggtttt acaatttaaa gaagcaatga ctcttgtaaa aagcgaatta aaagctatcg
     3541 caaaagcctt agcgaaacta gctaaaaccc ataaaaacac tgctatgatg ggaagaactt
     3601 tagcacttca ggctttgcct attacttttg gacataaagt ggctatttgg ttaagcgaac
     3661 ttgagcgtca ttttgaaaga atacttgaac ttgaaaaaag actttatgta ggcagtatag
     3721 taggcgctgt aggaactaaa gcaagtttaa gtgatgagtg caatgaagta gaaaaactca
     3781 ctttagaaaa tttaggactt gatgtgccta atatttcttg gcagagcgca cgtgatcgct
     3841 ttatagaact tggttttgta ctaggcaata tcaacgcaac ttttaacaaa atcgctcatg
     3901 aaattttaat cctttcacat aatgaaattg atgaagttgc tgaacctttt ggcaaaggac
     3961 aagtaggatc aagcactatg ccacacaaaa gaaatcctgc agtaagcgaa aatgcagtta
     4021 cagtaagcaa tgcctttaag gcaaatttag ccattttaag cgatattgaa agacatgaac
     4081 atgaaagaga tggtcaagtt tggaaaatgg aatggaagct tttacctgaa atgtttttaa
     4141 tgctttctgt ggttttagca aatatgaaat tcgctcttag tgatttagaa gtaaaaaaag
     4201 acaaaatgct taaaaattta aatactctta atggttttgt tttagcagag cgtgttatgt
     4261 ttgcattaag cgatcattat ggaaaacaac atgcccatga aattgtttat gaaaatgcta
     4321 tgctaggtat agaaaaacaa aaaactttta aagaagtttt acttgcagat aaaagagtat
     4381 ctaaggtatt gaaagaaaaa gaaattgatg ctttacttga tgcaacaacc tatgtaggat
     4441 atgcaccaaa acttgtagat gaatttttag caaaaatcaa aaatagcgct atcttaaaat
     4501 aggaaaaatc atgttctata gtgaaatttt agcggatttt attttcaatc ttaaatatga
     4561 aaatatccct aatacagttg ttcaaagggc taaagaactt atgcttgata gccttggaac
     4621 agctatagca gcaagcaaag aagaatgtgt tttaaatgct tttaaagctt ttgaaaattt
     4681 aagcacagaa aaaaatactc ctatttgggt aaatgatcaa aaattagatc ctatatacgc
     4741 agccatgcta gatagcattg cttctcatgc gttagatttt gacgatacgc atacagaagc
     4801 gattttgcat gcaagtgcga ttttaactcc actttgttta agttatggat ttcatgttag
     4861 taaagatgca aaaaaaatca tcaaagcttt tataataggc tgggaaattg cagctagagt
     4921 aggcattgca agtaaaggca cttttcataa gcgcggtttt catactactg ctattgcagg
     4981 aatttttgga agcgtgagtg caagtgcaat cttgctggat cttaacaaag aacaaatcat
     5041 caatgcttta ggacttgcag gaagttttgc aagtagggtt aatgagtttt tatccaatgg
     5101 atctaattca aaagttttac atattgccaa tgctattaaa aacggcatta tggtagctca
     5161 ttttgctaaa aacaatatga gtggaccttt gagtattttt gaaggtaggg ataatatctt
     5221 taaatgtttt ggtatagaag aagaatgcga taaaacagaa cttagcaaag ccttaggtga
     5281 aatttggcaa accatgcaag tttcaatcaa gccttatcca agttgtcatt ttgctcatgg
     5341 gcttattgat tgtgctattg ctttaaaaaa tgatggttta aaagctgatg aaattaaaag
     5401 tattcattgc tttgtagatg aagttcctat ttcttttatc tgcgatcctt tggaagcaaa
     5461 atacactcca aatagtgctt atgaagctaa attttccatg ccttttttaa tggctctagg
     5521 attctttgat ggtaaaatca ctcttgaatc ttatgaaaat ttaaagcgtg aagaagtact
     5581 agaatttgct aaaaaaatca gttacaaaaa aaggaaatct caaggctttc caaaatattt
     5641 tccagggcat ttagaagcca gtttgcaaga tggacgcata atccaaaaag atgtttttat
     5701 caataaaggt aattttgata atccactaag ttttgaagaa ttaaaagcta aatttttagc
     5761 caatgcacaa atttaccttg ataatactaa agctaacaaa attctagatc aaatcatcaa
     5821 tctagaaaat ttaaaccact tttcttttta aatatttatc cttcttttta caagaaggat
     5881 aatttcatta cactttttta ttataatatt tattattaat ttaggaatta caatgacttt
     5941 aaacgagtta aaagatggac aaaaagctat tattgtcaat ttaaacgctc acaaagaact
     6001 caaaaataga cttttaagct ttggatttat taaaaataaa aacttgaaaa aaattcactc
     6061 ctctttaaaa aatgccacca taatggtaga acttgataca agttgtgtta tcctaagatc
     6121 tgatgaagct aaaaccatag aagtgaatct tatatgaaaa aaatcaaaat agcccttgta
     6181 ggtcagccta atgtaggcaa aagtcttctt attaatgcgc tttgcaaagc taatatgaaa
     6241 gtaggaaatt ttagcggagt tactatagaa aaagcaagtg caaaaacttt ttacaaaaac
     6301 tatgaatttg aagtcattga tttaccagga acttattctt tagatggata tagcgaagaa
     6361 gaaaaaatca cacgtcattt tttaaatcaa aatgactatg atgttattgt taatgtttta
     6421 gatgccacca atttagaacg caatcttatc cttagtgcag aacttttaag ccttaataaa
     6481 aaaatgcttt tagctttaaa tatgtgcgat gaagccaaaa aagaaggtat agagcttgac
     6541 acttctgttt taagccaaga atttcaaagt caagttgttg aaatttcagc aaaaacaaaa
     6601 gaaaatttag aacttttgct gcaaaaaatt attattttat ttgaaagtaa atttattcca
     6661 agatcccaat tttacactcc gctttgcgaa aaaagtccag aaaaaagtcc agaaaaagaa
     6721 gatttattat attttattaa tcaactttca aaaaaaatta ttacacacaa aaaagaagaa
     6781 agaaatttaa ccaaaaaaat cgatgcctta cttatccata aattctttgg cttacctata
     6841 tttttatttt taatgtggct tttatttcaa ctcaccttta gcttagggca aattcctatg
     6901 gattatatag aatcaggctt taatgcctta ggtgaatttg ttaaaaacaa tatttctaat
     6961 acctttatcg cttcagcttt ggctgatggg attatcgcag gtgttggtgc tgtgatactt
     7021 tttttgccta atataatgat tttattttta ggcatagctc ttttagaaac cacaggctat
     7081 atgtcaagag tagctttttt acttgatggg attttacata aatttggttt gcatggtaaa
     7141 agctttattc cgctaatcac tggttttggt tgttcggtac ctgcttttat ggctacacgc
     7201 actcttaaga acaaaagaga tagactttta actctttttg tgatcaattt tatgagttgc
     7261 ggggcaagac ttcctgtata tgtgcttttt atcggtgctt tttttccaag tgaaaaagca
     7321 ggaaattatc tttttggaat ttatatttta ggtgcgattt taggactttt tgctgcaaaa
     7381 tttttaagaa tgacagcatt tcgtggactt gatgaacctt ttgttatgga aatgccaaaa
     7441 tatcgtatgc caaattggca tttaatttgg tttatggttt ataataaagc caaaatgtat
     7501 cttaaaaaag caggaacttt catacttttg gcctctttgc ttatatggtt tgctagtaat
     7561 tttccaaaaa gtgaagaaaa tttaaatgat tttaatgctc aagaaagagc tatagaacaa
     7621 agttatttag gacaatttgg caaaggcata gaacctattt ttaaacccct tgagttagat
     7681 tggaaattaa gcgtatcttt aatcagtggt ttggctgcta aagaagtgat gatctcaact
     7741 atgggcgtgc tttattcact aggaaaagat gtagatgaaa caaataatga tttaaaagga
     7801 attatcgcta aaaacatacc tataccaagt gcagtggctt ttattttatt tgtaatgatt
     7861 tataatccct gctttgcagc aactatagtt ttttcaaaag aaagtggaaa gctaaaatat
     7921 actctctttc tctttctttt tacctgcaca agtgcttata tagtagcttt ttagggcttc
     7981 atattgctaa aattttatta aattaacttg cttttaatga tgaaatttta gtgatattat
     8041 cttcaaaagc ttttaaaata ctataagcaa taccttcaaa atcaagccca ccgcaaagat
     8101 agattaaagt catacgaaaa gatttactca catcaagctt tggtttttca gcattcatat
     8161 ttaacttaaa atcataagga cttgcatgtt taaaagcata attttttgcc gcaattaaaa
     8221 aatcattctt atcttttaaa aatgcgcctt taaccaaaat aaaactcatc tcaagatatt
     8281 tccaaaaatc ttttgaaggc ataggatttt catcaaaatt ttgttctata aaagcatagt
     8341 ttttctcaaa ggatttttta taattttcta caagcgaagc acctaattta tttttagcta
     8401 tattttgtaa aataagtttt atattgcttt caaattcaaa atctatttgt tctaaaattt
     8461 taatttgctc ttctagaaaa aattcttgtt ttaactcttc attgcaaagt ttagcgtaag
     8521 aagaaatatt tgccataggt ttttcataat tcccaaactc atcccaaaaa tttttctcac
     8581 tacaggctat acaaccatgt cctgcagcca ctggccaaga agttttagca ttaaatttca
     8641 ctttaggaca gttgttgtaa gtataaggtc ctttacaacc tatcttaaat aaacaagctc
     8701 cattctttgc agcttcatcg tcaaaatgtt cagcaaaaat cccactttca aatttcgcct
     8761 ttctttcaca catatcatgc aaacatttac cataagccca cacaggacga ttttgctcat
     8821 caagttcagg caaaactcca aataaagcaa aaaaacttaa agtcgcaatg atatttatat
     8881 cacttggagg acaacctggg atatttacta ctttctgact taaaacttcg ctaataccac
     8941 aagttttact aggatttgga taagcagctt gaataccacc ataacttgaa caagtaccca
     9001 ctgcaaagat agccttggct ttagcggcta gtttgtctaa aatttcatag ccactctctc
     9061 cttgcgctcc tatagtaaga aaaaaggtat caatggctgc aacaccacct tcaaccgcta
     9121 aaataaaatc ttcttctaaa acatgttcta aaagctcttc agccttagtg ccatttgctg
     9181 ccattaaagt ttcatgatat tctaaagaaa aaaaatcaaa aataagctca tcaaaacttg
     9241 gcaactcaga acgcaacaaa ctctcactac accctgtaca ttcacaaaga tgaagccata
     9301 ctaactttgt tttaggtgcg atttgaaaaa atctttgtgc aagaactgga atttcattac
     9361 ctaaagataa gtgcttagca agaattttta cactttcttc attgataacc ttatcctctt
     9421 ttaaagtaga attttcaagt tttttaatgc gatcttcaag tatatttttt aattcttcat
     9481 tgctaagctt tgccatcttt tatccttttt gattatccca acaaagaaca gtttgccctt
     9541 cttcattttt ttcaacatca cccataccca tgatgttata tcctgcatca acataatgta
     9601 tttcacctgt aacaccattt gccaaatcgc taagtaaata catagccgaa tttcctacat
     9661 cttctatact aacattgcgt tttaaaggag aattgatttc attgtatttt aaaatcattc
     9721 taaaatcccc tattccactt gctgctaaag ttttaatagg acctgctgaa atagcattaa
     9781 cgcggattcc ttttactcct aaatctcttg ctaaataacg cacagaactt tcaagtgcag
     9841 cttttgctac acccataaca ttataatgag gtacatattt aaccccacca agataactta
     9901 aagtcaaaat cgaaccctta tcttttaaaa taggtaaaac cgcacgtgtt aaagaaagta
     9961 aagaatacac agaagtttgc atagctatat caaaagcttc ttttgaagtt tctaaaaaag
    10021 aattttctaa agcttctttt ggagcaaaag caaccgcatg cactacaaaa tcaatctcgc
    10081 ctaaatcttt tttgattttt tcagcgatag aatctaaatg ctcgttatta tttacatcaa
    10141 gctcataaac aaaattagaa ttaaactctt gtgctatagg ttctacgcgt ttttttaaag
    10201 catcatttaa aaaagtaaaa gcaagctcgg ctccttgatc aaaacatgct tttgctatgc
    10261 cataagcgat agatttatta ttcgcaaccc ctacaataag gcctttttta cccttcataa
    10321 tcatctttta tcctttgatt aattttataa aattttctac ttttaaagct gcagagccta
    10381 tcaaaactcc accacaatga tttacactta aaatttcttt gatattattt tcattcacac
    10441 ttccaccata aagcaaaggt accttggtta aactcgctaa aaattcaagc actttagcga
    10501 tatctgtact ttgtgcgctc actcccgttc ctatagaata aataggctca taagcgatga
    10561 tgagtttttc ataatttaaa tcaataattt caagttgttt ttttaaaaac tctaaagtct
    10621 tgcctgaatt ttttgtatct aaattttcac ctatacaaaa aacaatttta taaccatgct
    10681 ctttagcaaa atcaaattta gccttaataa attcttcatc tcctaaagct cttctttcag
    10741 aatgcccgat taaaacacat ttgatcccaa attcgtccaa atgctctttt ccaagctcgc
    10801 ctgtaaaagc accattaaca caaggataaa aattttgcgc tccttgtatg aagttatttt
    10861 cattttctaa aaatgctaca ctaggtggga aaacgataat atcatcacat tttgctccca
    10921 tagttttatt taaaatttca gcataaattt taaaacttgc tcttgtgtga ttgcatttta
    10981 aatttgcagc aaagatcatt cattttcctt agatcttaaa gcttttacgc ctggaagttc
    11041 tttaccttct ataagttcaa gagaagcacc acctccagtg gaaataaaag tcatttcatc
    11101 tgcatcacct gcgcgcgcaa ccacatcagc cgtatcaccg cctccaacaa cagaagttgc
    11161 atgtccttcg ctgatataat gactcatttt aatgctacct tttgaaaatt tatcaatttc
    11221 aaaaacaccc ataggtccat tccaccaaat cgtttgcgca tcagaaatca cctctttaaa
    11281 aagtctcaca ctcgcaggtc ctatatctaa acccatccaa ccatttggaa tttcttgcgc
    11341 tggaacaaat ttcatcggcg catcttgtga gcacgcagga gcggctacaa cgtctactgg
    11401 aagataaatt ttcactccta aatttttacc cttggtaaga attttattag cttcttctaa
    11461 aagttcttct tctaaaagtg aatttcctat atcataacct aaagctttta aaaaagtaaa
    11521 tgccatacct ccgcctatga ttaatttatc tacctttggt aataaatttg tcaatgcttg
    11581 aagttttcca cttacctttg aacctccaac aacagcgaca aaaggacgtg ctggatgttt
    11641 gataagattg cttgcaaaat caatttcttt ttggagtaaa aatcctgcgc ctttgtgttt
    11701 ttcatcaaaa aatttagtaa tcgcctctac actagaatgt gctctatggc atactccaaa
    11761 agcatcattg atataaactt gaaccataga agcaagttct ttggctaaat tttcatcatt
    11821 tttagtttcg cctttttcaa aacgcaaatt ttcaagaagt aaaatttcac ccgcttttaa
    11881 attcatagct ttagtttttg catcttcgcc gataacatct tttgccataa taatttcttt
    11941 atctaaaagt ctagcaagac gcttagcaac aggttctaaa gaatacttgg aactaatttc
    12001 ttttggacgc cctaaatgag aggctaaaat cacactacaa ccattatcca aacaatatct
    12061 tatcgtagga atagctgatc ttatgcgtct atcatcagtg atatttaaaa aatcatcttg
    12121 aggaacatta aaatcacatc ttataaaaac ttttttctta gctaaatcaa tgtcttttat
    12181 agaaataata tcactcatga ttaagcctta tttgcaatat atactgccat atctactaga
    12241 cgacttgaat agccccattc attatcatac caagcaatca ccttgataaa atcatccgca
    12301 atcacttgag ttaaatcact tgccacaatt gctccataag aacaagtgat aaaatcgctt
    12361 gaaactcttt catcatcatc taccattaaa atgcctttta aatttgtagt tgcagctttt
    12421 ctaaaagctt cattgatttc atctttgcta actttacggc ttagttgtgc ggttaaatcc
    12481 acgcttgata catcaatcac tggcacacgc atactttgtc cgtgaagctt gccattaagc
    12541 tcaggcataa caagcttcat agcttttgct gcgcctgtag aagttggaat gatattttgt
    12601 gctgcagcac gagaacggcg tttatcttta gctttagcat caataatact ttgtccattt
    12661 gtataagcat gtattgttgt cataagtcct ttttcgatac caaaattatc ttgtaaaaca
    12721 cgacaaacag gacctaaaca atttgttgta caacttgcat tagaaataat gctttcaccc
    12781 ttgtaaagtt ctgaatttac tcctaaaaca taagtaggag tatcatcttt tgcaggagca
    12841 ctcatgatca ctttttgcac tcccatatct ataaattctt gacattttgc catagttaaa
    12901 tgcgctcctg tgcactctaa aacaatttgt acaccgtgtt ttgcaaagtc aagatctttt
    12961 acattgcgac ttttaaatac tttgattttt ttaccattta ccactaaatc atcgccttca
    13021 ctatcaacac tgcctttaaa ttcaccatgt actgtatcgt atttaaaaag gtattttgta
    13081 agttcaatat ccgtagtatc atttatcgcc acaagctcaa tatcatttct ttctaagatg
    13141 attcttgcta cacatctgcc tatgcgtcca aaaccattta tagcaacttt tacagccatt
    13201 taatttcctt ttgcaaaata taatgctaat attctacaaa aaaaaggtta aaattttaat
    13261 gaagatagca ctttttggtg gcagttttga tccaccgcat aatggtcata atagcgttgt
    13321 tttagaggct ttgggaaaat tagatattga taaacttatt attatgccta cttatatcaa
    13381 tccttttaaa caaagtttta gtgctgatga aaagcaaaga ttcttatggg ttaaaaaact
    13441 ttggggacat ttgccaaaag ttgaaatttg cgattttgaa atcaggcaaa aacgccctgt
    13501 tcctagcata gaaagtgtta agtatcttta taagctttat aatcctagta aattttatct
    13561 tttaattggc gcagatcatt tagaaaaact tcatctttgg catgattttg aaaaactcaa
    13621 ttctttagta gaatttgtta ttgctaatcg caatgatata ggaattccta agaatttcaa
    13681 agatttaaaa accaataaaa aaatcgcttc ttctttcata cgcgacactt taaatacaaa
    13741 tgaggtttgt gaagaaatta aagatgaagt aaaaaaatat tatgaaaaat tacaaaaaaa
    13801 ttgatacaat ttcaaaaatt aaaggacaat aatgcaagaa agaatagatt taatcgttaa
    13861 aattttagat gaaaaaaaag ctgaaaatat caaaaccatt gacatgagcg agcaagaata
    13921 ctttgtaaaa tatgtcatta ttgcagctac tttaggagaa agacacgctc tatctttgat
    13981 cgatgagctt aaaacacgac ttaaagccaa aggtgaggaa tttttaaaca tagatagtag
    14041 tgaagaatgg agcgtgattg atcttggtga tattttaatc catcttttaa caccagaaca
    14101 cagaggaatt tataatatag aagaattatt agaaaatctt aaaaaaggta gggtttaaaa
    14161 aggctaaaat ttattagtct ttttaatttt tagagattat cgatatattc tttaatttct
    14221 tttttgattt tctctttttg ttcttttaaa gcttcttttt tagctttata ctcagcctta
    14281 ctcatataat ctttttgttc ttttaaagca tcaagttctt tttcgatttt ttccacttct
    14341 tgttctttaa gttttttagc ttctaacttt ttatcataaa acataggatc tttagcacaa
    14401 tcattttgta cttgttttaa agcaagctct aagcttaaag ttctagctgt atcattatgc
    14461 gctttagaaa aactgatttc tttattgata cgatcgattt ttctatcaca ttcacttgca
    14521 ccaaaagcaa aagcacatag tgtaagtaaa ataagtattt ttttcatttt taattccttt
    14581 ttaaaataaa ttaaatcgcg gaatattatc tcatcaattc ttaaatctag cttttatatc
    14641 attaaacaaa gtaaatacca tactttcaag ctcttttgct ctttctaaag atgttgcctc
    14701 aaagcgtgtg ataagataag ggctggtatt agatgcacga agtaaagccc atccatcgcc
    14761 aaaatctatc ctagctccat caatttcaca aagactttta acacctttta aagctccttt
    14821 ttcaatctct ttttgaaatt cttccacaag tttgaatttt tcttcttcat ttacaggaat
    14881 tttaatttca ggtgtagtat aaagttttgg taaagcttta atcatacttt ctagatcaaa
    14941 acctttataa acaagctcca aggctcttaa aaatgcataa attccatcat cataaccaaa
    15001 atatctatgt ttaaagaaaa tatgcccact cacttcagca gctaaatcaa tatctttttc
    15061 tttcatcatt tttttgatat tagaatgtcc tgtttttccc ataaaaatag ttccaaattt
    15121 agccacttca tcaaaaagat ttttagaaca ttttacctca cctaaaatgc gtggattagg
    15181 gatatcttta gcaaacaaat aacaaagctc atccccacaa aatacatgag ttttacttaa
    15241 agcaaccatt ctatcagcat ccccatcaaa agcaaaagcc aaagaataat cttgattttg
    15301 atttaaaaat tctctaatcg cacttaagtt ttcttcttct gtaggatctg gagcatggtt
    15361 tggaaactgt ccatcgggct ctgcaaacat tacatgagct tttaaattta aagccttgat
    15421 taaaggcttt atcaccactc cagccgcacc atttgtgcaa tcaacaccaa atttataatt
    15481 aaaatccttt aaaaagctaa attgctcgca cataaatttc acataaaggt ttaaaatatc
    15541 gtatttttct acttctaaat tttcttcaat atcatcatct aaatgcttat aaacttcttt
    15601 tgaaaactct tttaattcta caccaaaaaa actttcttta ttaatagtaa ttttaaaacc
    15661 attataatct tttgggttat gagagcctgt tatcataaca tttgcatcaa attttaagcc
    15721 ctcataaaga ctaaaatatc ccaatggagt tggtacaagc cctatatcat agatttttat
    15781 tcccgctttg ttaagtccac tcactagata attaaaaagt tcatttgcac tatatcttgc
    15841 atcatagccc acgcttacat ttttacaacc cctatttaac atagtttgtc ccaaacaaaa
    15901 acctatagct ttaacgcttt tttcattcaa ttctttgtcg taaagtcctc ttatatcata
    15961 ttctctaaaa atcacatcta acattttttc cttcaaattc atctcttctt tgacctaaat
    16021 ttatcgtttt tctaaagcaa atttggatag aaaagaaatt tttgctacaa ttttacatta
    16081 atttcactaa atgaaggaaa atttatggat gaagaattag aaaacgaaga aacaaaaaag
    16141 aaaaaaggtg gttcacttgt aattattatt gttattttac tttttgtttt acttcttagt
    16201 attatgggag taattgcttg gcttatttca agcagttcaa gtgatgaaag tgaagtcaaa
    16261 gaagctccaa aagaagaggc aaaagccgat aaacctaaag tttcagctcc tgctcagcga
    16321 ggtagtgatt ttgctaatat aggtcctatg tatccacttg atccttttac cctaaatttg
    16381 cttagcgata gcggctcaag atatgtaaaa tgcactatag aactagaaca aaatagcgaa
    16441 cttttaaaac ctgaacttga taaaaaagtc ccagtcattc gtgatattat tattcgtaca
    16501 ttaacagcta aaacttttga agaagtaagt acacaaaaag gcaaagaacg tttaaaagat
    16561 gagctagttg gaaaaatcaa tgaaatttta accgatggct ttattaaaaa tgtttatttt
    16621 acggattttg tagtttctta atgcgtgtag gctgtgatat catcgccatt tctagaatag
    16681 aaaaaattca ttctagacat ggcaaaaatt ttttggataa atttctaagc ccaaaagaac
    16741 aaatactcat taaaaatcca gcaactctag caggtctttg ggctgctaaa gaagccgcta
    16801 gcaaggcttt gggtgttgga atttgtgaat tatgcagttt ttttgatatt gaaatatcaa
    16861 aagatgaaaa aaacgcgcct aaattaaaat attctcaaaa aattacaaaa gattttaata
    16921 tcactcaaac ttccctaagt atttctcatg ataatggttt tgctatagcc atagtggctg
    16981 tagtttgatt attttcctat agtttgcttg tctaaatttc ttgaaagtat gaaatccacc
    17041 acaggttgtt ctcttttgtt tgctctttta caatgatctt tttgaaaaaa atctgtgatt
    17101 tttataacaa tccttgccca ttttttgcga tttctttcac gccacgcatg agaagaaacg
    17161 ctctcccaag catagccatt aaacaagctt gcatttacaa aatgatctaa ggctctaaca
    17221 ccctgtcttg ctcgtgcggt attaaaaaaa attcctataa tcacgataaa aagatatcct
    17281 aaaactgcta aaggtactat tgcacaaagc agaatagtcc ctgctaattt ttcttttaag
    17341 cttcctttta aagtgcgttt tacacgacga cgaaaattgg cgcgaatttt agttctaact
    17401 cttttcatag ctttcttttg ctaaatttta tcctcatacc attagccgaa cgcactgtta
    17461 aacgccctac tacatcaggt acaaaacctt cttcaagttc tagtttgtaa gtttttaaaa
    17521 tattagccaa aatcaaaatc gcttcttgca tagcaaaacc ttgtcctata caaattcttt
    17581 cccctacccc aaaaggcaaa taagcatctt ttttgtactc tccttcaaaa cgagaaggat
    17641 taaatccatg cggatttgtc caaaattctt catgtctgtg tatcagccaa ggagcaatca
    17701 ccaccccaga acctttttta ataagcttat ctctaacttg agtatctttt tttgcctctc
    17761 ttgcaaaaaa cccaacagga ggataaagtc ttaaagattc tttaaaaata tttgttaagt
    17821 atttaaactg tcttagatgc gaaatttcaa tgactccacc ctgtaaaacc tgagtaatct
    17881 cctcgtaagc tttttcttgc tccttaggat aaagactaag caaataaagc gtccatgtca
    17941 aagaacttgc tgtggtttca tgtcctgcta aaaaaagcat agccacttga tctaaaattt
    18001 cctcaaaaga aaaacgctta tttgtatcag catccactac taaaagcaaa gatcctaaaa
    18061 tatcttcaaa ttctgcatta tctgccatat catatcttgg ttttatgata tcacttaaaa
    18121 cctgtctgat cacatctccg gccttagcac gcttacaatc tcctaacaca taagaaagcc
    18181 attttggaaa acgaaacata cgacgcatgg ctgtatgcac gctttgctct tgaaaagtca
    18241 caaatgcgtt taagattttt ttaccttttt cctcatcgag ttttgaagac ataatggtgc
    18301 gaaaaatcac atcagcggta ataaaagtca tagcttcatc tacttcgata acagcatgat
    18361 ttggatactt gctaaaacga tccatcatat ctgccacagc ttcactcata agattaaaca
    18421 ctttattgat acgagtcatt tcaaaacttg gacgcaaaag ctctctttgt tttttccaaa
    18481 cttcaccatt tgtagtaaaa atactctccc ctaaaagcgg acttaaaagc tcatgtaaaa
    18541 atgcactttt aggaaattct ctaacctcat caaccatcat tcttttaact tctttagtat
    18601 catttatgac ataaagatca aaatttggca tcttcacata gcctgtttgc attttataac
    18661 tacgctcata aagcccgtca agccaagatc tacgctttaa caaaaaagtt aagagcgtag
    18721 aagctttatt tttataaggt tttggaaaaa aggggcattc actcatattt ttaccttttc
    18781 ttctaaaaat ttaggcatta tgatgaaaga aaaaaaatca taatcacctt taacactaat
    18841 actataaaga tataaaaagt gcgctttgtt tttatctctt tttatttttt tatactcatg
    18901 tttttcatat aaagtgtgaa atttagcact taaaaatgga ggtgtaaatt tagcatttac
    18961 gccactcgtg cggaaaaaat ccacttgagg aaaacatgct ccatcaataa tcgatgtgta
    19021 atcataccat tttaaatcaa accttgaaac aaattcaagc ttctttctaa attcatccgc
    19081 ttttttttga taactcacta aaggaatgca ttctcctaga gtaagaattt ttaacttatg
    19141 aagtaaagat aaatctaaat tttgtcttaa aatacactcc aaaacttcta tacaaactat
    19201 agttccaaca ctatgtgcta ctaaaacaag ttcataatct tgtttatttt cattttgttt
    19261 tagcttatct actatggtat ttgcaaaaag cttgattctt tcttgcatag tgcctgtttt
    19321 tttatcttgc caagtagcac aaaaagcaca aattcttgct atccaaaata cagctaattt
    19381 cttacctaat ttaaataaaa aatgatttag caaaaatcct aaaaaacatc ctatgatgat
    19441 agctaaagaa aaatgcatat aattttgcaa aaaagcaaaa cttccaaaag ctaaaaccaa
    19501 agaaaatagt aaagaaaata acacataaaa aaaaggataa taacctgtga taagttgata
    19561 aatcgactct ttgccaaatt tgataaaaag ccctgtgata gtataaattc taaaaaaact
    19621 ataacaatcc gctaaggcat ctttgtaatt ttccgaccaa tttttcttaa caatatcatt
    19681 ccatgttaaa aaatgatatt tagtttgcac tccctcgcaa gaaattttaa aaaaaggaaa
    19741 ttgctcattt ttttcaattt tacttaaatc agctttaata ttaaaagtat gagaataatc
    19801 ttttaggttt tttttaaata aatcataata aaatctataa cttttaggat catatcctgc
    19861 tatataaaat acttccctat ccatacaata tttctttttg cttttaatta taacaacttt
    19921 gctttaaaag ctctcttaat caaagctttt tagtcttatt tgtctaaaaa gaaattttta
    19981 taaaaattgc cgttgaattg attagtttgt aaaagatatt ttttaaaatt acataccaaa
    20041 acaggattgg gtttataagc atgagcttca cgccaaaaaa attgaagttt ttttggataa
    20101 gataaacctt caaaatcata aaaagcattg ccacaaacct tagtcggaca gccttctaaa
    20161 atagcactaa ggcctactgt tgaatttata gtaatacaac ctaaagcctt tcttaaaaga
    20221 actggcaagt gggtatcatg aacatataaa acccttccct ctacatgata tttttgactt
    20281 aaatcattta tgagtttaga ataattctta taacccctat ccatgggatg atgtttaaaa
    20341 actagataag atttagctct tgcatgattt gcaaaagaaa gtatggtttc ctctataaag
    20401 tgctctatgc tttttttgta atgatattta atttgcgtat cgctataaac ttgtaaaatc
    20461 gccaaaaagt actttttttc taaattataa atcttttcat ttagtttttt ttctgtaatc
    20521 ttataaagat actttctata caatgatcta aaccaaaata aaaattcaaa aggatataaa
    20581 gtgcgatgat gaagtttgtt gttaaaaaat ggagccaaaa taaaagcaaa caaccaatac
    20641 aaaaaagcat caaaagccat aaatttaaat ccacctggaa tttcttttat gctttctttg
    20701 gtaaaaatat tttgagaaag ataaaaattt ttatcacgcg gtaaagaaga atttgcattc
    20761 accccatctt tttccaaagt aatacaataa ggccttaaat atccttcttc aaaaatccat
    20821 atttcaattc ctaattcttt agccacttta atagccttag catggataat acgacaatca
    20881 ttatacatta aaatagcatc gatttttttg ctttgaaaaa aatctctata gaaattttca
    20941 agatcttttt catcgcactt acacctcgtt ccactaggat agaaaaaaaa atctccaccg
    21001 ttaaaattga gtttaaaaac tttggtttgt tttttttcca ttcttattgc aagatgatga
    21061 aaaaaatttc ccacaggccc ttgcaagagt aaaacatttt taccgctaaa ttctttttta
    21121 attttagtat taaatctcat ttctttgcta aaaattcata aaatcttctt atttttctaa
    21181 gcataaaagt tttaaaatct attgccaatt ttatatattt ttttgaaaaa taagcttttt
    21241 gtaaatttag cattatatct aaacaaactt caatttcaca taaagttttt gttttaggat
    21301 ttatatatct tggatatgtg atcaaagcac ctgctacaag ctcctctagg cttagttttc
    21361 ttgttcttct tttgcattta tgtttatctt ttgttaaacc ccagcccgca taaaaaggca
    21421 taccataagt aaaaactttt ttagctctta aaagagcatc aaaaccactt gtagaagtaa
    21481 tagtgtgaat ttcatcagca atttttatag cactatcaat actgcaatct tttacaatct
    21541 catcacaaaa ttccaagatg cgtgtttcat cttttaaacc cacacggttg ccactcaaca
    21601 catcaggatg gggtttaaag atgatataag catcttgatt tttagaacgt acctctttaa
    21661 gcaaatcaag agtagataag ccaaaacctc ctaaaatcat cgaagcatca tcttcaactt
    21721 gagcagggat taaaataatc ttttgtccta ttttggcatt gatctttaag tcttcatgct
    21781 ttaagccatt atattttgaa aagcggttct caagtaagat ttttataata ttttttgccc
    21841 tatttagtat attttcatca aaaatttcat tttgcaaaag ctcttctaat ttgcttgctt
    21901 tatttggatc tatgtaaagt cctttatcat caatgattaa agaaaaagga cgcgtaagat
    21961 cagaacctaa agagattgag cgaataaatc catcttcaac taaagaaatt ttgggagtaa
    22021 aatggagcaa atcctcatct tgcgcttttt ttataagagt agttttaaga gcgttataat
    22081 ctatcctttt accccaaata aaaaatttat cattttcttt taattgtata ttctttaagc
    22141 aatctaagaa atctagaaat atgatttcat tgtttttagc tataaaaaaa ggttttacaa
    22201 atttcctttt ccattttgaa aatccaaaga aaaaaagtct attagaattt gccttttcta
    22261 tatctttata ttttgctaaa gtttgaatag tatcaaaaat attacttttt tgatttaaat
    22321 aaggattaaa atactcagca taaagtatat aagcagcata gaaaacttct tctaaacttc
    22381 ttttttgcat ccttctttta cactctaatt tatcttttgt tagaccccaa cctgcataaa
    22441 aaggcatacc ataacaaata cactcacatt cttgcatcaa agcttcaaaa cccatgccag
    22501 aagttttggt ataaacctta tcaaaaaact caagcaaggc tatgggatta aaattttcag
    22561 tgattaaaat acattcttta gataaggaat ttatatctaa atcactttgt tttttaccac
    22621 ttaaaacatc aggatggatt tttatataaa ttttagattt aggattttct tttatggcat
    22681 cttttatcat atcgacagtt ttaaaatctt tagcaagccc aaattcaagc gaggcatcat
    22741 tggccgtttg agtgatgatt aaaacgcgtt tttcatcttt ttgaaaataa tcatctggga
    22801 tatcaagatt gttattatac ttgctaattt tatatttttt gataagctct atagcttttt
    22861 tagcttgctt gatttcttca tctttaaatt cataagtatt taaaagattt tcaagctttg
    22921 aaggcattgt tgcatcataa taaatgccta tatcatcttt aactatagaa aaacttgggc
    22981 tattttcaac tcctaggttt aatgagcgaa taaatccatc ttcaaataaa atcaaagaac
    23041 caccgaattt tttatggaat aaaaatgcat atctaccggt acgctttctc ccccatccat
    23101 aaaatttttt cttataaaat atttgaataa aattatttac ataaaaataa taaccattta
    23161 acatttttta atgcctatag tatctacaat ttgctcgagt ctttgtttcc aagtatgatt
    23221 ttttgcaata aattctgctc cattttttaa tttgatttta tcatcttcac ttaaaccatt
    23281 tttttgaaat ttgtacagca tatttcgcaa ttctttttct gtttgaaatg aataacaata
    23341 gtctttaaaa tatttttcaa cggctgaagt atgattagta atagctatac ctccacaagc
    23401 tataatctct ataagtcttc ttgaaaacat agtaggagaa ttttcaatag tattaacatt
    23461 taatgaaatt aaatattttt tatatatctg cgcagttttt ttatactcta ctgaaggata
    23521 aatttgcata cctttaaata ttggatatct atagttagta gattttctat ttgaatttct
    23581 atcaaaaaca tcaagattat taatttcaga agataattta aacatcatat cttgataaaa
    23641 tcttcttttt tcatgtatat gtcttgaata acttccaaca aaatttgcct tatttaaagt
    23701 aaaattaaat ccagtaaaat tatgaaattt agactgaaca gcaaaaggca aaacacccac
    23761 aaaagaattt tctcctacat aagacttata ctttgatata cagttttcat caacggtaaa
    23821 aataaaatca aataattttg cactttctat aaatctatca aaatgcacat gatcttcttt
    23881 attccaaaat accgtcggaa tatttaatgt tttggcaaaa tctacgcatt tttgtagttt
    23941 tttattattt ctttttggat aatcaggata tgaggcaatt tgatacttcc atttattttt
    24001 gcaaccatgc caagctgatt caacaaacaa aaagtcaggt ttccaaaaat aaaacaacac
    24061 tttataatta attggggtta catttcttaa aacaacccca tcttcttctt ttaaagaagc
    24121 ataggttaac tcatctgcta ttaaagctat ttttaataca ttattcacgc ataacaccaa
    24181 aatatttttt aataaaatta tactattttt ttctcaactt gtatatttca aataaaaatt
    24241 tgatataccc ccccccacca taccaatttt tatgagcttt tataagagcc tctcctaatt
    24301 tataagaaat atgattttta agcttaatag cttcttgata atcaggatat tgtttcaaag
    24361 aaggtaattt tagggaaaaa tcttttttta ttttctcttg ataaattttc tgatattgtc
    24421 tgtatgatac taccgtactt aacaatgcta taggcattat taaataacct aggaaagatt
    24481 tagaatttac tatcatagtt tgccctagtt tataagataa ttgattttga attctagatt
    24541 tagcagtgcc atatttaact tgaaaaaata atttagtttg aatctggttg aattgcatta
    24601 ttttagactg tataattatg tcttttcctt ctataatttt atctttagtt tttactacat
    24661 ctaatataaa ttcagctatt ttatcccaat actctgactt catttcttta agcttataat
    24721 tttctttata attacttaaa tcctgctttt ggaataatct ttctttaaaa ggaaaaaatt
    24781 cttttcttac ccattcgttt gatttttcaa aataatcaag ataagattgc attatttttt
    24841 taggaggttt aaattttaga aacaaacatt tagaagtaaa a
//
LOCUS       DAPIWV010000010        24769 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.011, whole genome shotgun sequence.
ACCESSION   DAPIWV010000010 DAPIWV010000000
VERSION     DAPIWV010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24769
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.011"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            57..833
                     /gene="surE"
                     /locus_tag="RJ272_000271"
     CDS             57..833
                     /gene="surE"
                     /locus_tag="RJ272_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDV7381404.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            823..1482
                     /locus_tag="RJ272_000272"
     CDS             823..1482
                     /locus_tag="RJ272_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HDV7381405.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLDKK
                     S"
     gene            1466..1924
                     /locus_tag="RJ272_000273"
     CDS             1466..1924
                     /locus_tag="RJ272_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7381406.1"
                     /translation="MIRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(1987..2367)
                     /locus_tag="RJ272_000274"
     CDS             complement(1987..2367)
                     /locus_tag="RJ272_000274"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDV7381407.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTVTKITNYEKHGAIF"
     gene            complement(2364..3212)
                     /locus_tag="RJ272_000275"
     CDS             complement(2364..3212)
                     /locus_tag="RJ272_000275"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDV7381408.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3223..4047)
                     /gene="panB"
                     /locus_tag="RJ272_000276"
     CDS             complement(3223..4047)
                     /gene="panB"
                     /locus_tag="RJ272_000276"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDV7381409.1"
                     /translation="MRKSILSFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            4264..5025
                     /locus_tag="RJ272_000277"
     CDS             4264..5025
                     /locus_tag="RJ272_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-461"
                     /protein_id="HDV7381410.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFLRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKS"
     gene            complement(5123..6007)
                     /locus_tag="RJ272_000278"
     CDS             complement(5123..6007)
                     /locus_tag="RJ272_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7381411.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(6004..6678)
                     /gene="modB"
                     /locus_tag="RJ272_000279"
     CDS             complement(6004..6678)
                     /gene="modB"
                     /locus_tag="RJ272_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7381412.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(6671..7072)
                     /locus_tag="RJ272_000280"
     CDS             complement(6671..7072)
                     /locus_tag="RJ272_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7381413.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(7069..7818)
                     /gene="modA"
                     /locus_tag="RJ272_000281"
     CDS             complement(7069..7818)
                     /gene="modA"
                     /locus_tag="RJ272_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7381414.1"
                     /translation="MKKFIVFFGILFFTLHLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(7869..8555)
                     /gene="bioC"
                     /locus_tag="RJ272_000282"
     CDS             complement(7869..8555)
                     /gene="bioC"
                     /locus_tag="RJ272_000282"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDV7381415.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFGCG
                     RGEFSKKLQNFITFNKYLKNDILNFKENSNILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIILSLRDMLNQNGILLLSTFAKQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELVELSFDNALEVFRHLKLSGVNSLGFYPLNKCFLKDFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(8552..9163)
                     /locus_tag="RJ272_000283"
     CDS             complement(8552..9163)
                     /locus_tag="RJ272_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDV7381416.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASYPSHFSHLKSDKNVILFYDY
                     ENFDLNFNFKAFDELFLIAFSIGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEALFKERKSLAKDFIFKDEKSLKIELEKLFDFALTKQEENLLW
                     DKVYSSKEDEIFPPNALKNSFKNLIFLDEPHFAFFHFKTWDEL"
     gene            complement(9160..10302)
                     /locus_tag="RJ272_000284"
     CDS             complement(9160..10302)
                     /locus_tag="RJ272_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDV7381417.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDQKLLNLAGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEELESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLADKFIHASMIDGLRLGEADFFRFHHKNMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDKEGL
                     GLVKKLALENEVDFLVFTFGKAIASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHTVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHTGLNTEELERIIELL"
     gene            10370..11653
                     /locus_tag="RJ272_000285"
     CDS             10370..11653
                     /locus_tag="RJ272_000285"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDV7381418.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKITNAIKKQVDKLEHVILAGFTHEPIIKLSARLCEKV
                     GHDFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(11640..12245)
                     /locus_tag="RJ272_000286"
     CDS             complement(11640..12245)
                     /locus_tag="RJ272_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDV7381419.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(12255..12569)
                     /locus_tag="RJ272_000287"
     CDS             complement(12255..12569)
                     /locus_tag="RJ272_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7381420.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(12572..12910)
                     /locus_tag="RJ272_000288"
     CDS             complement(12572..12910)
                     /locus_tag="RJ272_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7381421.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            13042..13578
                     /locus_tag="RJ272_000289"
     CDS             13042..13578
                     /locus_tag="RJ272_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDV7381422.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            13575..14120
                     /locus_tag="RJ272_000290"
     CDS             13575..14120
                     /locus_tag="RJ272_000290"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDV7381423.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            14122..15180
                     /locus_tag="RJ272_000291"
     CDS             14122..15180
                     /locus_tag="RJ272_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7381424.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLVMYYFFPVIARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            15224..16432
                     /gene="lysA"
                     /locus_tag="RJ272_000292"
     CDS             15224..16432
                     /gene="lysA"
                     /locus_tag="RJ272_000292"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDV7381425.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYVKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            16434..17201
                     /locus_tag="RJ272_000293"
     CDS             16434..17201
                     /locus_tag="RJ272_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HDV7381426.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAALVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            17189..18262
                     /gene="pheA"
                     /locus_tag="RJ272_000294"
     CDS             17189..18262
                     /gene="pheA"
                     /locus_tag="RJ272_000294"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDV7381427.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            18252..19346
                     /locus_tag="RJ272_000295"
     CDS             18252..19346
                     /locus_tag="RJ272_000295"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDV7381428.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKKVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDKKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            19398..21080
                     /gene="fliF"
                     /locus_tag="RJ272_000296"
     CDS             19398..21080
                     /gene="fliF"
                     /locus_tag="RJ272_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HDV7381429.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            21080..22108
                     /gene="fliG"
                     /locus_tag="RJ272_000297"
     CDS             21080..22108
                     /gene="fliG"
                     /locus_tag="RJ272_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HDV7381430.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            22116..22946
                     /gene="fliH"
                     /locus_tag="RJ272_000298"
     CDS             22116..22946
                     /gene="fliH"
                     /locus_tag="RJ272_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HDV7381431.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            22939..>24769
                     /locus_tag="RJ272_000299"
     CDS             22939..>24769
                     /locus_tag="RJ272_000299"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDV7381432.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNSCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKV"
BASE COUNT         8813 a         3474 c         4150 g         8332 t
ORIGIN      
        1 tgaagcttta aaaaaatatg ttaaaatcca gatttttatc ttttgcaagg aagacaatga
       61 aagaaattct tatcactaat gacgatggtt atgaaagcga aggacttaaa aaactcatta
      121 agatgttaac aaaagaattt aaagccaaga tcaccatagt agctcctgct agtgaaaaat
      181 cagcttgttc gcactctata accctaacca aacctttgcg ttttgttaaa gtgggaaaaa
      241 gattttacaa acttgatgat ggcactccag cagattgtgt ttatcttgct ttgcatgctt
      301 tatacaaaaa gcgtttgcct gatcttgtaa taagtgggat taataaaggt gctaatgtag
      361 gcgaggatat tacctactca ggaacttgcg caggagctat ggaggcggtt ttacaaggaa
      421 ttcctgctat cgctctttct caattttata aaaaaagcga aaaagaacta gactataaaa
      481 atgctttaca aattaccaaa aaaatcattc aaaatatttt tgataaaggt tttcctttgg
      541 aaaaaaaaga atttttaaat atcaattttc ctgcaaaatc aaaaatcaaa ggcattaaaa
      601 tttgtaaagc aggcaaaagg gtttataatt ttgaagccca ttcaaatgtc aatccacgag
      661 gagtggagta ctattggctt gcagcggcga atttagactt tgaagatgag aaaaatagcg
      721 atattgcctt gcttaaaaaa ggctacgcta caataacacc tataatgctg gatcttacag
      781 cttatgaaag aatgaaaaaa gttaaaaaat ggttaaaggc aaatgatgaa tgatagattt
      841 acacgtataa aatggctagt tggagaagaa aaatttcaaa aaatttcaca aacaaaagtt
      901 ttggtttgcg gacttggtgg agtgggtgga atttgcgttg atgcgcttta tcgtagtggt
      961 tttaaaaacc ttactttaat cgatgcggat aaatttgaaa ttaccaatca aaatcgccaa
     1021 attcatagcg aaaatatagg cgaagaaaag gctaaagtat ttgaaagaat ttataaggtt
     1081 aaaggtatag tcagtaaaat cgatgaaaat tttttaaaaa attttgattt aagcgagttt
     1141 gatcttatca tagatgccat tgatgatatt cctgcaaaag tagctttggc tcatcttata
     1201 gattttaaaa aacaaatttt tatctcctca acaggtggag ctagaaagct tgatccaaca
     1261 cgcattaaaa ctacaagtat ttttaaaact cacggcgatg ctttagcgaa aaaatttcgt
     1321 tatgagctta gaaaatcagg ctttaaggga aattttgatg tggtgttttc tgatgaagaa
     1381 gctcattgta aagaccttgg ttcatttatg ggtgtaacag cttcttttgg acttgcttta
     1441 gcttctttgg ctttaaggaa agtacttgat aagaaaagct gatattaaag atttaaatgc
     1501 ttgtttgtcg ctttttgagc aaagcgtaaa aacactttgt gctaaggatt atacaaaaga
     1561 tcaaatttgt gcttggatta aaattgatag acaacaatgg gaagaaaaat ttaaatatga
     1621 tgagatcttt gtctatgaaa aaagaggaaa aatcgcaagt tttataagtg ttaaacaaga
     1681 gcagaaattg cttgatttgc tttttactca tcctgatttt gttagacaag gtttagcaca
     1741 aaatttactt gattttattt taaaaactta tttgcataat gaaatttaca ctttcgcatc
     1801 cttaagtgct aaagattttt tcttaaaaaa tggttttgaa cttataaggg aaaacaaggt
     1861 tatcaaagag ggacaaaatt taaaaaaatt tttaatgaaa aaagatgtgg tttataaaaa
     1921 ctagaagtta agataagcaa aaataatgga ttaaaagata gaaaaaatta caaaaatagc
     1981 tagatgttag aaaatagctc cgtgtttttc ataatttgtt atttttgtaa cagtgttatt
     2041 ttcatccaca aaaacaactt ttggtttaaa tgtttttgct tcttcttcat taaaatcagc
     2101 ataagacatg atgatcacct tatctcccac ttctgcaaga cgagccgcag caccatttaa
     2161 gcatacaact ccttcttctt gcgtggctat ggtataggtt tcaaatctag cgccattatt
     2221 gacattgact acttggactt tttcgtattc taaaattcca ctcgcttgca ataatttttc
     2281 atctatactt atacttccta tataatcaag cctagcttct gttacgcttg cgcgatgtat
     2341 ttttgatttg agtaaagtga tattcatttt aatccttgta ctaaaaaatt atcaatgagt
     2401 cttgtttttc caacaaaagc agccaccgct cctaaaacat tatcagtgat attttcgata
     2461 ttttccatgg tgttaaaatc gactaattct atataatcga ttttgattag tttttctttt
     2521 tctaaaatat ctttcatagc ttggatgatc ttagaagtat ttttttctcc ctctcggact
     2581 aatttttcag ccaaaaaaat gctttgagat atagctagtg acgcttttct ttcttctttg
     2641 ctaagatata catttctaga gcttttagct aagccatctt cttctctaat gataggacaa
     2701 atttgaattt ttaaatcaaa atttaaatca tcaaccatat gcctaacgac tacgcattgc
     2761 tgcgcgtctt tttgccccat atagactata tcagggttta ggatattaaa aaatttagtt
     2821 aaaaccgtgc aaacgcctct aaaatgcccc ggtcttttag ccccgcaaag tttatcagtg
     2881 atcgtattca tatctacata ggtgctaaaa ttcttaagat acatttgagt tgcatcgggg
     2941 ataaaaacca tatcaacgcc attatcttga cacattttaa tgtcgcgttc taaatctctt
     3001 ggataactag aaaaatcttc attaggccca aattgcatag gatttacaaa gatacttact
     3061 ataaccttat cttgtgtttt ggcatgtttg actaaactta aatgtccatc gtgtaaaaaa
     3121 cccatggttg gaacatagcc tatactaagt tgatgtgatt tccaatcttt tacaatttgt
     3181 tttgcttctt tgacagaagt aatgacttgc atatttgtat ccttagtata atttatctaa
     3241 taattcatca tctaaataat caaagctgtg ctcttgggaa ggaaaaatac cgcttttaac
     3301 ttcatctcta tatttttcaa ctcctacttg aggatcaatt ttatcaaaat gctttacaaa
     3361 ttttgcttta aaatctttat ttaaacccaa aagatcgtga taaactaaaa cttgtccatc
     3421 gcagtatttg cctgaaccta tgccgattgt tggaatttct aaaatagagc ttattttttg
     3481 tgctagtttt acaggcacac attctaaaac caacatacaa gcacccgcat cttgcacagc
     3541 ttttgcatca tctataattt tttgggccga ttgtaaatct ttaccttgaa ccctatagcc
     3601 acctagcata tttacagctt gtggggttag tcctaggtga gcaacgacgg gtattcctga
     3661 ttgggaaatc aatttaatct tacttgcgat ttctataccc ccttccactt ttaccccatt
     3721 tgcgtggctt tctttgataa atcttgaggc atttaagata gcgtcacgat ctgaactttg
     3781 ataagacata aaaggcatat cagcaagtac gaaagacttt ttagctccgc gagaaacagc
     3841 tttggtaaaa atcaacattt catccatagt aacacttaaa gtatcttgca tgccaagcac
     3901 tgtcatagct aatgaatctc caaccaatat aatatctata tcgctattgt ctaaaattct
     3961 tgcactatga taatcatacg cacttaccat ggttattttt tcatttttgg cctttttttc
     4021 caaaaaacta agaatacttt ttctcattta aaatacctcg tttagctata aaatagtaag
     4081 caaaaaacta gcatataaat tttcataaat agtaaataaa cgataaaaca aaatatattt
     4141 aattaatgga ttgttttaat ggttacaatt ttagaaaatt tcagttcatg ttaaaggata
     4201 tttaaagaaa ataaagcttt aaaaagtatt ttgtttaaaa ttatttaaat agaaagatat
     4261 tttatgaaaa aaataacttt atttttactt ttcttaaatt tagtgtttgg gcaagataag
     4321 atattaaata attggtttaa agagtataat acaagcggca cttttgtttt ttatgatgga
     4381 aaaacttggg cgagtaacga ctttttaagg gctatggaga ctttctctcc cgcttccact
     4441 tttaaaattt ttaatgctct aattgcactt gatagtggtg tgataaaaac taaaaaagaa
     4501 attttttatc actatagagg tgaaaaagta tttttatctt cttgggcgca agatatgaat
     4561 ttaagttcag ctataaaata ttctaatgtt cttgctttta aagaagtggc aagaagaatt
     4621 ggtatcaaaa ctatgcaaga atatttaaac aagcttcatt atggtaatgc taaaatttcc
     4681 aagatcgata ctttttggct tgacaactca ctaaaaataa gcgctaaaga acaagcaatt
     4741 ttgcttttta gactttcaca aaatagctta cctttttctc aagaagcaat gaatagtgtt
     4801 aaggaaatga tttatttaaa aaatatggaa aatttagagc tttttggaaa aacaggtttt
     4861 aatgatgagc aaaaaattgc ttggattgta ggttttgtgt atttaaaaga tgaaaataaa
     4921 tataaggctt tcgcgctaaa tttagatatt gataaatttg aagatttata taaaagagaa
     4981 aaaattttag aaaaatattt agatgaactt gtaaaaaaaa gttaaaaatg atggctagtg
     5041 agtatttcgt aaaatgcaaa aatacttaat tgtatgattt gcgtacactt aaagtactca
     5101 ttaaaaaatt aaatttttgc tcttatttat caagttttcc tacgatgata gggttaaagg
     5161 cttttatgga tagcaaaagc gtatcgccga tttttacatc ttgataagct tttagaaatt
     5221 cctcttcact aagagtgatt ttaataatat cttgatttaa aagcaaggtt aaaaccacta
     5281 aaatatcact ttttttaatt tctagcaaag ttgcacttaa gcgtaatttt gcgctgatat
     5341 ttgaatgagt aaaaaattca tttttaggaa aatctttaat aatttttccg tttttaagct
     5401 ctaaaattct atgacttaac ttataaattt cagctagatc atgacttacc aataaagtac
     5461 ttattttaaa atactctaaa atcttggtta attcatcttg taaattggca cgcattttaa
     5521 aatccaaagc actcaaaggt tcatctaaaa gcaagatttt tggttctctt gctaaagctc
     5581 ttgctaaagc tactctttgt gcctgccccc cacttaaatg tttaggataa attttagcta
     5641 aattttcaag cttcattaag gctaaaagct cgctaacctt tgctttagaa ctagcggcat
     5701 aggcgatgtt ttcttttata ttcatatttg gaaaaagcgc ataatcttga aaaacaaaac
     5761 caatttttct tttttgtaaa gctaaactaa aattttttga agaatcaaac caaagttcat
     5821 tatctacttc tatacgcccc aatttaggct ttataagtcc cgctatgatt tttaaaagag
     5881 tggtttttcc tgctccactt tcgccaaaaa gtgcagtaat ttttcctgat tctatatctt
     5941 ttttaaaatt taaatccagt cttcctttag cggtattcat aggatgattg atatcaattc
     6001 ttatcattga aaactcattt ttttattgat aaaataaaga ctaaaaagta ctaaaaaaga
     6061 aaaaataaac aatataaaag catattgatg ggctaagcta tagtttaaga tttcaagttc
     6121 atcataaata gctatactag ccactaaagt ttcaccttgt ttatgtcctc ctatcatcat
     6181 cacgactcca aattcaccca cagtatgggc aaaactcatc gcacaagcac taaaaattcc
     6241 tgctttagaa ttaggtaaaa tcactctaaa aagagtataa attttacttt tacctaaact
     6301 ataagaagca tcgagcaaat ttggattgat cgatgaaaag gcactttgca aaggatttac
     6361 cataaaaggc aaagaaaaaa tcaaagaagc aaaaacaaga ccttcaaaac taaaaaccaa
     6421 agaaagatta aaatattctt ttaaaacttg ccctaaaaaa ctattagccg aaaaagttac
     6481 aagcaaataa aatcccaaaa cactaggagg taaaatcaaa ggcaaggaaa taaagctttg
     6541 aaggattgtt ttaaaaggaa aacgcacaaa acttaacaaa taagctaaaa aaacaccgat
     6601 aaaaaaaagg ataaaagtcg tgataaaagc aagtttaaaa gtaagataaa gggtttgtaa
     6661 aaaagctgga tcaagcacta tgactcctta atacaatatc atttgctttt acaaaacaaa
     6721 gccattcttg attttcacaa atttcaagtt ctaaagcttt ttctttggtg ataatactag
     6781 aaagttcatt acctttaaaa tcaaaaaata cctgatataa aagtttgcct tttttaattt
     6841 ttgtaatttt agctaaaaaa gaattttcaa cacttaaaag agttttgctt gcgctaaaac
     6901 aaagctcatg ctctttaaaa agaagttcta cactcacacc aatttttaaa ttttctaaag
     6961 attttaattc aagcattaaa acactaaaaa tcacttcttt agaaagtatt ttaacaataa
     7021 ctatatcctc ttgatttaaa agctcacaaa tttgtccttt tataaggttc atggtgtgct
     7081 aaatccgtat tttttaaaaa tttcttttgc ttttgaagag ccaataaatt cgttaaattc
     7141 aaaggctaat tttttatcct tagcgtattt tgtgatgaca taactttgct ctaaagggct
     7201 aaaatacttt gcatcaatta taacagcctt acccttagga tgattgatag aagaaactaa
     7261 agaataagcc actatagcta tatctgaatt tttgctatct acatgtaaaa caggcactga
     7321 gatattttcg cctaaaacga ttttatcctt aagaagctca tttaaaccca aattttcaag
     7381 cacttcttta gctgctactc cataaggagc tactttagga ttggctatgc ttagatgcgt
     7441 gattttgttt gccttttctt ttaaattttc aacgcctcct tggagtaaat tttcatccaa
     7501 gctatacaaa gccaaaactc ccaaaacata aacttttggt tttattaaag catttttatc
     7561 atcataaata gccttagcat atttagtatc cgctgaaaaa aagagatcaa attctcttcc
     7621 ttgttttaaa agctcataat attttccaga agcaccaaaa accaattcta ttttatcttc
     7681 tggatgtgtt ttcaaaaact catctttaac ttcactcatc gcctttgaag ctgaagaagc
     7741 tacaaaaata cttaaatttt gcgcatttag atgtaaggta aaaaacaaaa tcccaaaaaa
     7801 tactataaac tttttcattt agctttcctt gtgtaaaaat ttaatttttg gattataaca
     7861 caaaaaaatc attttatatc atttttgcat aaaataaata caggatgata agtgagtttg
     7921 ttttgaaatt tttcttcaaa atcttttaaa aaacatttat ttaaaggata aaaacctaaa
     7981 gaatttaccc cgcttaattt taaatgtcta aaaacttcta aagcattatc aaagcttaat
     8041 tctacgagtt cttgagtgat ttttacctca ttaaaataga ctttaaaaat ttgttctaat
     8101 tcatttaagc taaaataatt taaaccaaac cccgtacttt gtttgatttc ttttaaattt
     8161 tgttttgcaa aagtagaaag aagtaaaatt ccattttgat ttagcatatc tctaagactt
     8221 agtataatgc gttttaaatc aagccattgc aaagttgcat ttgaaacaat aagatcaaat
     8281 ttctctttac ttaaatcttg ttttgcaatt tcattcatat caaaaattaa aatattagaa
     8341 ttttctttaa agtttaaaat atcgtttttt aaatacttat taaaagtaat gaaattttga
     8401 agttttttgc taaattcacc cctaccacaa ccaaattcaa acactttttc aaaatgtgaa
     8461 atttttaaat cttttaaaat ttcacaaagt tttaaaccca tgaaatcttg cacttttgca
     8521 tgtttttcat aatcttttgc ttttaaaaaa ttcaaagctc atcccaagtt ttaaaatgaa
     8581 aaaaagcaaa atgcggttca tctaaaaaaa tcaaattttt aaaactattt ttcaaggcat
     8641 ttggtggaaa aatttcatct tctttacttg aataaacctt atcccaaagc aaattttctt
     8701 cttgttttgt taaagcaaag tcaaaaagtt tttcaagctc tattttcaaa gatttttcat
     8761 ctttaaaaat aaaatctttg gctaagcttt tgcgttcttt aaataaagcc tctttaaaat
     8821 gttctaattt aaaattttgc agggtttttt taaaaattgt aggatgaatt ccttttgatt
     8881 tatctatgcc taaatttgta ccatttatgg ctattttttg cttaaaatta agctctttta
     8941 aaagtctatt tgccacacaa acccctatag aaaaagcgat taaaaaaagc tcatcaaaag
     9001 ctttgaaatt aaaatttaaa tcaaaatttt cataatcata aaataaaatc acatttttat
     9061 cgctttttaa atgcgaaaaa tgactaggat atgaagcaaa ccctccaaat accactataa
     9121 gtttttttga atcaggattt ttgcataaaa attcatattt cataaaagct ctattatcct
     9181 ttcaagttct tctgtgttaa gtcctgtgtg taaagaaaaa cgaattctag ctgtattttt
     9241 tggcacagta ggttctttaa tcgcaggagc aaaaaaacca gctttttgaa gtttttgtga
     9301 aatttctaag gcttttttat tttcacctaa aagcaagcaa ataatataag catcacctaa
     9361 aacagtgtga tttttttctt gcaatttact tttaaaaaaa gtacttaaaa gttctaattt
     9421 ttctctttct ttcttaaaat aaggcatttt tttaaaaata aattgtgtcc aagctacatt
     9481 aataggtggc aaagctgtag aataaataaa agctctagct ttgttgatga aaaatttttt
     9541 atatttttca tcacatatta tacaagcacc catggaagca atggcttttc caaaggtaaa
     9601 aaccaaaaaa tccacttcat tttctaaggc tagtttttta acaagcccca aaccctcttt
     9661 atcaaaacaa cccacgctgt gtgcttcgtc tatataaagc ttgattttat cataacgtct
     9721 tttaagctca cacaaagttt taaaatcgct aaaatctcca tccatactaa acaaagcttc
     9781 gcttaaaacg atgatatttt cataattttc ataatgtttt tggattaaac tctctaaatg
     9841 attcatattt ttgtgatgaa aacgaaaaaa atcagcctcg ccaagtctta agccatcaat
     9901 catacttgca tgaataaatt tatcggctaa aaaaagcgtc ttagaaacgc tagaaagtgc
     9961 tgctatacaa gagatattta gatgataacc actattaaaa tgtaaaattt ccttatcttt
    10021 aaatttagtc tttaaaaaac tttctaattc ttcataaatt tcaaaatttc cactcaaact
    10081 tcttgaactc gaacttgaaa aaaacaaatc ttgctctttt agggtgttta aaaactcagc
    10141 ttttaactct ttagaagacg ccaaataaag ataatcattt cctgctaaat ttaaaagttt
    10201 ttgatcttgt ttataaacaa atttattttc atgttttaaa ggcgttagag ttcttagatt
    10261 gtgattttgc tctagatctt gcaaaatttt ttcaagcttc atttttttcc tgtaaattta
    10321 aaaatttaaa gtattatttt gccaaaatat ttttaaaaaa gaagttataa tgcaaaatca
    10381 aatcttaaaa aatctcgatt taaaacacat ttggcaccct tgcacacaaa tgaaagatca
    10441 cgaaactcta cctttaattc ctataaaaaa agcaaaaggt gtatggcttt atgattttga
    10501 tgataaagct tatatggatt gtgtgagttc ttggtgggtc aatctttttg gtcattgtaa
    10561 tgaaaaaatc acaaatgcca ttaaaaaaca agttgataag ctagagcatg tgatcttagc
    10621 aggctttaca catgagccca tcatcaagct ttctgcgaga ctttgtgaaa aagtggggca
    10681 tgattttaat aaatgttttt atgcggataa tggctcaagt gccattgaag tagcacttaa
    10741 gatgagtttt cattatcatt taaataaggg agtgaaaaaa agtaaatttt tatctttaag
    10801 caattcttat catggtgaaa ccttaggagc cttaagtgtg ggcgatgttg cactttataa
    10861 agatacttac aaagccttgc ttttagagtg tttaagcacg cctgtgccac aaggcaaaga
    10921 ctacactaaa gagcttgaaa ttttaaaaga tattttagaa aaaaatgcaa gtgaaatttg
    10981 tgcttttata cttgaaccct tggtgcaatg tgcaggaaat atgcatatgt atgaagcagg
    11041 gtttattgat gaggccataa agctttgcca taaatttgga gtgcaagtga tttttgatga
    11101 aattgcagtg ggctttggac gcacaggaac tttgtttgcc ttacatcaat gcaaacaaag
    11161 ccccgatttt atctgccttt caaaagggat aacgggtgga tttatgccac tttctgtagt
    11221 gcttacaaga gatgaaattt ataatgcttt ttatgatact tatgaaagcc aaaaggcttt
    11281 tttacattct catagctata cgggaaatac cttagcttgc gcggcagcaa atgcggtttt
    11341 agatatcttt gaggatgaaa atattttagt aaaaaatcaa attttaagcg agtttatcaa
    11401 aaaagaattt tcaagacttg aaaaatttga ctttttgggt aattttagaa cttgcgggat
    11461 gatcagtgct tttgatattt taagcaccaa gtataaacgc gtaggacttt ttgtatttca
    11521 aaaagcctta gaaaaaggtt tgcttttaag acctttagca aatacgattt attttatgcc
    11581 tccttacatc atcacaaaag aacaaatcgt ttatgtacta gagagtttag agcagatttt
    11641 taaggaattt taagttgtaa aatttcttgc atttgctctt taaaatcttt atttaaaatg
    11701 ctattttcat caaaaaaatc aagattgatt ataggaattt ttgcataatt ttttataaaa
    11761 tcatcttgta agatatcttt tttacccatc attacaaggg ctaaaagatt gatatttctt
    11821 tgctttaaag cttcaatgct aagcaagata tgattaatgc ttccaagata gtattttgct
    11881 accaaaatcg tagggtgttt gaaaatattc acaaaatcaa tcatagtgta attttcatcc
    11941 ataggagaaa aaagcccacc cgcaagctca ataagtaggt ttttgctttt tggtaaaatg
    12001 atatctaagg ctttataatc aagcttttct ttgatttttc caagatgagg agaagctgga
    12061 gtttgcaaaa aaataccttc tttaaaaatc tttgtttttg ggctaaattt tgcaataaac
    12121 tcgctatctg ttggagttcc tgcttgaatg agtttaaaat aatcatagtt aaaattcgca
    12181 caaaaagctg cgctaaaatg tgtttttcct acatcagtat gtattccact tacataaatt
    12241 tgcacaaaaa atcctcaaga aagaaatttt aaacccgctg tacaagtaat aatcacagcg
    12301 attaaaaaaa gtttcaaaaa acttttactt tctttataaa aaagcactcc tatcattacc
    12361 ccaccagcgg ttccagctcc tgtccatata gcataagcaa cgctcatagc gatattttgc
    12421 atacttaagc ttaaaaaagt aaaagaaaat ccaaaacaca ctatcaaagc taaaaggtaa
    12481 agcttgtttt tagtgcttac aagttctttc atgatcacca cgccaaaaat ttcacaggca
    12541 gtagctaaaa acaaataaaa ccattccata actaagcttc cttgcttacc catttaaggg
    12601 ctataatgct taaaagtaaa atcgctataa gcacaagttt aattatagaa acagcctcat
    12661 taaaaataaa catttcattt aaaaccactc ctatagtgcc aatgcctaca aaaacactat
    12721 aagtaatgct tacttcaagt ctttcacaag cttttaaaaa acaagtaaaa gaaatacaaa
    12781 ccccaatggc tgttaaaata tagtgccaaa tttctgtaga atacttaagt ccacttaccc
    12841 aaaaacattc tataatcccg cctaagatta ttaaaaacca agctatattg atattgaatt
    12901 tttcattcac atgaagcctt aaattaacat aatttataaa acaaattata tcttaaagaa
    12961 attaaaagaa gctataaatt tacttttcca taagccaaaa ttagatataa tcaaagctca
    13021 ttttttaaga aaggacaaaa gatgttagaa ggcatcgtta gagagagtat cggtagaaaa
    13081 gctgctaaag ctttaaaaag agatggttat ctaatcgcaa acatctatgg aaaaggatta
    13141 gaaaacatca atgccgcttt taaagtaaat gagtttatta aggaagttcg taaaaaaact
    13201 actttaattt ttgatgtaaa agtaggttct caaactttaa gcgttgtagt tgtagattat
    13261 caaaaagatc ctgtaactgc agaacttaaa catgtggatt taaaagttgc acaaaaaggt
    13321 gtgatttcta aatacatggt tccagttaaa atcacaggaa cagctatagg tcttaaaaat
    13381 aaaggtgttt taatccaatc aaaaagaaga ttaaaagtaa aatgtgcagc tgaaaattta
    13441 ccaaatttct tcgaacttga tgtaagtaaa cttgatgtgg gtgatgcttt acttgttcgt
    13501 gatattgtag ttcctgcggg agtaactatg attgatgctg atagagtagc ggttgtaggt
    13561 gtagaaaaag ctagatgatt ttagtcgtag ggcttggcaa tataggcgta gagtatgaaa
    13621 atacccgtca taatgtcggt tttatgctaa ttgacttact tttaaaagaa agcaatttta
    13681 caaatcttac aaactctaaa tttaaaggag agctttttaa aataggttct tctttacttc
    13741 ttcttaaacc tagtacttat atgaataatt caggacttag cgtaaaagca gtgaatgatt
    13801 tttataaatg cgaaagaatg atagttatcc atgatgatat agatataaat ttaggagcct
    13861 tgcgctttaa aaaaggcggt tcaagtggtg gacataatgg gcttaaaagc atagatactt
    13921 tatgtggaaa tgactatgaa agagtgcgta taggagtggg aaagggtgaa aatgtgattt
    13981 cccatgtttt aggtaaattt aaatccgaag aagaaataac tttaagcaaa gttttagagc
    14041 atacaaaaaa agctttgctt gagcttattg aaaatgatga tttgtctgct atatcatcca
    14101 aatacagcct aaaggcttaa gatgtggata ttttttcgtt ttatttcagg gatttattta
    14161 aaaaattttt ttattatatt tttttcttta cttggttttt attgcggtat tgatttactc
    14221 ttaaatttta aagatctacc aaaagccgca aatcttgatt tgctttatgt tatgttttta
    14281 tctttttcgg cagtgcctta tgtattaccc atttctttga tttttgcttt ggtagtttct
    14341 ttgatttcta tgatcagagc aaatgaattt gtaagtcttt atgcgttagg actgagtaga
    14401 aattatgtta ttttatttcc ttttttatgg gctttatttt tttgttgtat ttatatagga
    14461 ttgaatttta cttcttttgc ttatgcaaat gattataaga gaaatatttt aaaaaatggc
    14521 actattatga atcaaagtgg agaagtgttt ttgaaattta acaataattt tgtttatatt
    14581 tcaaagataa acaatggaca aaatagtgct caaaatataa aaatttttaa tattaatgat
    14641 ttaaatttaa gctcttttgt aagtgctaaa aatgcccatt ttgaaggtga aagctggatt
    14701 ttgcgagatg gtaatattac attattacct aaaaattatg aacttgctaa tgatggttta
    14761 aagatacaag atttctccga gcttaaatca cttgagggtt ttaaaccaaa gattatagaa
    14821 ggggttgcta gtaatagtga ttattcaata tctgatgcac ttgaaagttt tgagcttttt
    14881 aaggcacaaa atgtcaatac agatactctt aaaatcaatc tttataaatt tgtttttact
    14941 cctttttttg caccattttt aatgcttgtt atgtattatt tttttcctgt aatagcaaga
    15001 ttttttaatc ttgctattgt aacttttgta gcttttgtag tgactttgat gatttgggga
    15061 gtcttgtttt tgcttactag attaagcgaa aatagtgtga ttgcaagtga aattggcatt
    15121 gtagtgccta ttataatttt gggttgttta agtgcttata tgtattataa gcatcgataa
    15181 attaagcttt gtgtagtaaa attataaaaa ttaaaggtta aatatggatt ataaacaatt
    15241 aaaacaagaa tttaataccc ctttttatat ttacaatttt gatttcataa aagagcgttt
    15301 tttaaatctc aaagaggctt ttaaggctag aaaatctcaa attttttacg ctgtaaaagc
    15361 caattcaaat ttaagtttgt tgcaaatgct tgcaaattta gatagtggat ttgattgtgt
    15421 gagtataggc gaggtaaagc gtgccttaaa agcaggagca aaagcttata agattatttt
    15481 tagtggagta ggaaaaacca aagaagagtt aagacaagct ttagaatatg atattttata
    15541 tattaacctt gaaagcgaag ctgaaatgat gcttttagaa agtgtggcta aagaacttaa
    15601 tctaaaggca agaatcagca ttcgtgttaa tccaaatgtt gatgcaaaaa ctcatcctta
    15661 tatttctaca ggattaaatg aaaataaatt tggtgtcgaa attgatatag caagaaaaat
    15721 gtatctttat gtaaaaaatt catctttttt agagcccgtt ggagtgcatt ttcatatagg
    15781 ttcgcaactt ttagatattt ctcccattca tgaagcagca ggcatcgttg caaaacttgt
    15841 aagagagtta aaagccttgc aaatcgatct taaatttttt gatataggcg gtggtttggg
    15901 tgtggcttat gaaaaagatg agtgtgaatc tgatctttat gattatgcac aaggtatatt
    15961 agcacaactt catgggcttg atttaactat aggaatggag cctggaaggt atttagttgc
    16021 taaaagtgga gaatttgttt gttcagtact ttatgaaaaa caaaataaaa ccaagcgttt
    16081 tgttgtagta gatggagcga tgaatgatct tatacgccca agtttatacg aggcttatca
    16141 tgaaataatc ttaccttata atcaagccca agagagttta tgtgatgttg taggtggaat
    16201 ttgtgagagt ggagactttt ttgctaaagc aaggtctttg cctagcactc aaagtggtga
    16261 tataatggtt attaaaaata ctggagctta tggttttagc atgagcagta attacaatac
    16321 tcgtaataaa gtttgcgaat tagcccttga agaaggacag gtaagattga tccgtcaaag
    16381 agaaaatttt gaagatcaaa tcgctttaga agagaaattt ttaaaggctt aaaatgtttt
    16441 ttttagatgt tcaagggact ttaatttctg atcatgataa atctttaatc catggtgcta
    16501 aagaactgat cgatttttta aatgcaaaaa atcttcctta tcttatcatc actaacaata
    16561 caaaaaaact tgatttttta gaaaaattac agcaaaaagg attggctata aaagaaaatg
    16621 cttatattga tcctttcagc gttttaaaac accttttaag accttgtaaa gttgcggctt
    16681 ttggtgcaga tgagtttgta aaaagtcttg aaaatcttgg ttttgagctc gattttgtaa
    16741 atcctagtgc tgcgcttgtg gctagttatg atgattttaa atttaaagat tttgccacta
    16801 tgatagaatt ggctagaaga gaagttagat ttatagctat gcacgaaact agtatttata
    16861 aaaaagatgg taggccttat cctggtgtag gtagcattat ggctatgctt aaaaatgcta
    16921 ttgattttga atacgaggtt gtgggtaagc ctagcattgc tttttataaa gaagctttaa
    16981 atttaataag aagacaaaat tcaaaaatcg attttgaaga tattaaaatc attagtgatg
    17041 attttagggg tgacttgctt aaggcaaaag aacttggcat gaaaaccttg ctagttttaa
    17101 gcggcaagat aagcgacaca aaagggcttg atacggattt gcttgatgga gtttatccta
    17161 gtgtttttga gtttttaaag gatctaaaat gccaaattta gaagaattta gaaataaaat
    17221 cgatgcggtt gatgataaaa ttttagatct tttaaatgaa agaatgactt atgttaaaag
    17281 tataggtgag cttaagcaaa gtagtggggg aagtatttat cgtcctgagc gtgaaagagc
    17341 cattatcaat cgtttaaaaa atgcaaattt aggactttta gatcaaaatg ccatagaggc
    17401 aatttatcaa gaaatttttg cagtttcaag aaatttagaa atgcctcaaa ctatagctta
    17461 tttagggcct gaaggaactt atacacatca agcagcaaga agtcgttttg gtgcgatgag
    17521 tcgttatata gccttggcca atatcgaaga tgtttttaaa gagttaagca acaaagaagc
    17581 aaaatacggt gttgtaccta tagaaaataa taccgaaggt gcagtgggca ttactttaga
    17641 ttgtctaggt aagtataatg agcttaaaat ttttggcgaa atttatatgg atattcatca
    17701 ttcttttgta ggaattaatg aaaatttaaa agaaatcaaa cgcatttatt cgcatccgca
    17761 aggttataat caatgtcgta aatttttaga aagtcatgaa cttagtgcta tagaatttgt
    17821 tccttcaaaa tctacagcta atgcagctta cctagcttcg caagataaat atgcggcagc
    17881 aatttgttct agaatagcgg ctaagcttta taatgtgcct gtactttttg ataaaataga
    17941 agataatgca gccaataaaa caagattttt aattttaagc gatattaaaa atcctaaaat
    18001 gccaaattgt aaaacttcta ttttagcaca cacagcacat aaacctgggg ggcttagctt
    18061 tttattagag cagtttaaaa aagaaaatat caatcttact aagcttgaat ctcgccctgt
    18121 aaaatcaaaa gaatttttac acagttttta tatagatttt gaagggcata ttgatgatga
    18181 aaatgtaaaa aaagccttaa aagatataca agagattgtt tggcttggat cttatttatc
    18241 aggagaaaaa gatgaaattt aatgaatttt taaatcattt aagcaattat gaacctggaa
    18301 aagatataga agttattgct aaagaatatg gcgttaaaaa agtgataaaa ttagcaagca
    18361 atgaaaatcc ttttggcacg ccaccaaaag ctatagaatg tttaagacaa aatgcaaata
    18421 aagcccatct ttaccctgat gatagtatga tagaacttaa aagcacattg gctcaaaaat
    18481 acaaagttca aaatgaaaat atcattatcg gtgcaggtag tgatcaagtg attgaatttg
    18541 ctatacatgc taagttaaat tctaaaaatg cttttttgca agctggagtt acctttgcta
    18601 tgtatgaaat ttatgccaaa caatgtggtg caaagtgtta taaaactcaa agtattactc
    18661 ataatttaga tgagtttaaa aaactttatg aaacgcacaa agatgaaatt aaacttattt
    18721 ttttatgctt accaaacaat cctttaggcg agtgtttgga tgcaagtgag gcgaccgagt
    18781 ttattaaagg tgtaaatgag gattgtttag ttgtgattga tgcagcttat aatgaatttg
    18841 caagttttaa agatagcaaa aaacatttaa aaccttgcga attgattaaa gaatttgaca
    18901 atgtacttta tttagggact ttttctaagc tttatggatt aggaggttta cgcattggtt
    18961 atggtatagc taatgctaat attattagtg cattttacaa gcttcgtgcg ccttttaatg
    19021 tgagtaatct tgctttaaaa gcagcagttg cagcaataaa tgatgatgaa tttgctaaaa
    19081 aaactttaga gaataatttt tctcaaatgg aactttataa agaatttgct aaaaaacata
    19141 atatcaaaat cattgatagt tatacaaatt tcatcactta tttttttgat aaaaaaaata
    19201 gtacagattt gtctgaaaaa ttgcttaaaa agggtataat aataagaaat ttaaaaagct
    19261 atggtttaaa tgctatacgc attactatag gaacatctta tgaaaatgaa aaatttttta
    19321 cagaatttga taagatttta agatagataa atcaaataaa aatatgtaaa attcgctaaa
    19381 ctaagggatg agaattaatg gattttaaaa atatgcttca tcaaattggg caactttatc
    19441 aaaatttaac tcgcaagcag cgtatagtga ttgctgcatc tattgtagta gtggttgggt
    19501 ttttggtttt tttagcttta tttcgtggaa gtggtagtaa tgcaaataat ggatatgcag
    19561 ttttagttga aaatgtaagc ccaagttctt ctgctgcaat tgtagctaaa cttgaacaaa
    19621 ataatattcc ctataaatta gaaagtgaaa ataaaatttt agttccacaa gatcaggttt
    19681 atcgtcaaag aatgtttatt gcaagcgaag gtcttataaa agatagtcgc gtgggttttg
    19741 aagcttttga tactcaagct tttggagcta caaatgaaga gcaaaaggta aaataccaaa
    19801 gagccataga aggcgaactt gcaagaacta ttgagacttt agaacctatt cgtagcgctg
    19861 ttgtacacat agcatttcct aaagatagtg tttttaccga aaggcaaatt ccgcctacag
    19921 cttcagttgt tgttaatgtt cgcgaaggct taaagcttac tagaaaacaa attgatggta
    19981 taaaaaatat tgtttcagcg gcagttccaa aacttactaa agaaaatgtt aagattagtg
    20041 atcaaagtgg tgtgccttta gatgagcaag aagcatatga agatgacttg gttcgtgcgc
    20101 aaattaaatt taaaagtgat caagaaaaag ctttagaaga taagattata gaaaatttag
    20161 ctccttttgc aggtggcatg gataaagtaa aagtgagtgt aaatatagat tttgattttt
    20221 ccaagcaaga atctcaaagt gaaatttatg atccaaatcc tatagtgcgt agtgagcaaa
    20281 ctttaaacga ggaaagaaca ggtagaaaag atccagaaat tcagggtgtt ccaggtgctg
    20341 tttctaatat aggtcctgtt gaaggacttg acaataaggg tcaaattgac acttataaaa
    20401 aaaatcaagt tactacaaat aatgaacttt ctaaaactat cacaaatacc aaaaaacaat
    20461 ttgcaacagt tttacgcact tcagcagctg ttactataga tggaaaatat caagatgtgg
    20521 ttgatgaaaa tggggatgtg aaaagcgaat atgtcccatt gactaaagaa gagcttgcaa
    20581 gtgttgagag tatagttaaa aatactatta attttagcgc tactagaggt gatagtgttg
    20641 tggtgcaaaa tttaccattt catcgtgagt cgattagagt tgagagtaaa gttaaaactt
    20701 tttacaatcg ttttgttgag ccatttattc cgccggttaa atactttatt gcagcgattt
    20761 tactttttat tttttacaaa aaagttattg ctccatttac tcaaaaaatg cttgaagatg
    20821 tcgcagcaca agaggaaatg cagcaaggtc caaatgctgt tttagatgat gctgaagatg
    20881 ctttagagaa atttaatgca gcaaggaaaa aagttgaaga acaacttggt tttggggata
    20941 acttcaatga agattctatc cagtatgagg ttttgcttga aaaattgcgt ggtttggtaa
    21001 gtgataaagg tgaggaaatt gcagcacttt tgcaaaactt aattcaaaat gatagcgaat
    21061 ttggcgaaaa ggatatgtga tgataaagct aagtgaagaa caaaaaatgg tctatgatga
    21121 tttatcgatg cctgagaagg tagcaatatt tcttatacaa cttggcgaag atgcaacaac
    21181 ttctgtgttt tcacatatgg aaattgatgt aatcacagaa atttcacgtt atattgctat
    21241 ggctaaaaat gttgatagat ctgtagctac tgcagtttta gaagaatttt acactctgct
    21301 tcaatcaaat caatatatta aaagtggtgg tttggaatat gctaaagaaa tactttttcg
    21361 tacttttgga ccagagattg caaataaaat tcttgaaaaa ctcactaaaa gtatggagaa
    21421 taatcaaaat tttgcttatt tggcgcaaat taaaccacag caacttgcag actttattac
    21481 caaagagcac ccacaaacca tcgctcttat tttggcacac atggattcta ttcatgcggc
    21541 agaaacttta gagtatttta gcgatgaatt aagggctgag gtggttataa gaatggcaaa
    21601 tcttggcgat atttctccaa gtattattaa aagagtttct gcagtgctag aaagcaagct
    21661 tgaaagtctt acctcttata aggttgaagt gggcggccca agagcagtag cagaagtgct
    21721 taatcgtttg ggtcaaaaag caagcaaatc aaccattact tatattgaac aaagtgatga
    21781 acgcttagca gagactatta aagagcttat gtttactttc gatgatatac aaaaacttag
    21841 cactcaggct ataagagaaa ttttaaaagt agccgataag cgtgatttaa tgataggttt
    21901 aaaaggtgca agtgaagagt taaagcaaaa attcttagcc aatatgtcta cgcgtgcaag
    21961 cgaagctttt cttgaagaaa tgggtttttt gggtgctgtg cgtgttaaag atgttgaaga
    22021 tgcacaaaga aaggttgttg aagtggtgca aaaacttgca gaacaaggtc ttgttcaaac
    22081 aggcgatgcg gatgaaatga tagagtaggt gagagatggt taatcgtagc aatgtaattt
    22141 ctggtggggc ttctgatcag catgttgttg aaggatatcg ttttaaagtt atttcagaat
    22201 ttgataatca tacaggtgaa aaaaaacata ctcaaactcc agatgaagaa aatgctaata
    22261 tatctttaaa tgacgaaaaa ccagtcgaag aaaatcaagt cattgcctct acgcaagctg
    22321 ttatggaaac tcaaattcca acatttcaac caagctttgt tgaagatttg cttaaaaaaa
    22381 cagatgaaat gtcaagcaat attattaaac ttcaaatgca aatagaaagc caagagaatg
    22441 aatttaataa ccgcttaaat tcagaacttg aaaatgctaa agaaaaattt gccaaagaag
    22501 gttatgagaa agcaaaagaa gaatttcaaa aagaattgag tgattttaaa gataagtatt
    22561 taaaaagtat agccaaactc gataatgctt gcgaaaatct tgaaaatttc atagaaaaaa
    22621 atgagaaaga attagcagat actgctatag atatcgctaa agaagtaatc ttaaaagaac
    22681 ttgaactaaa ttcaagtaag atagcttatg ctttggctaa agatttaatc ggcgagctta
    22741 agggtgctag tgcaattgag cttaaggtta atgcagagga ttatgagtat ttaaaagagc
    22801 aatttgatca gaatgctcac attaaaataa gtcttgatga tgcaattagc aaaggaagtg
    22861 ttgttattat aagtgacgca ggcaatatag aatccaatct taactctcgt ctaactaaaa
    22921 ttaaaaaaat ggtgaataat gagtaaaaaa tttgcccata ctcaagaaga gttagaaaag
    22981 ctaagtttaa aagaattaga aaatttagca gcatctatgc gtgaaaaaat catacaagtt
    23041 gtgagtaaaa atggtgggca tttaagttca aatttgggtg ctgtagaact tagtatagca
    23101 atgcatttgg tttttgatgc aaaaaaagat ccttttattt ttgatgtgtc gcatcagtct
    23161 tatacacaca agcttttaag cggaaaagaa gaaatatttg atactttaag acaaatcaat
    23221 ggtttaagtg gttatacaaa acctagcgag ggagattatt ttgtagcagg gcattctagc
    23281 acctctattt ctttggcagt aggtgcttgt aaggctattg ctttaaaggg tgaaaagcgt
    23341 attcctgttg ctttgattgg agatggtgct ttaagtgcgg gtatggccta tgaggcttta
    23401 aatgaattgg gtgattctaa atttccttgc gtaatacttt taaatgataa tgaaatgagt
    23461 atttcaaaac caattggagc aatttcaaag tatctttctc aggctatggc aacgcagttt
    23521 tatcaaagtt ttaaaaagcg tattgctaaa atgttggata tattacctga tagtgctact
    23581 tatatggcta agcgttttga agagagtttt aaacttatta ctcctgggct tttgtttgaa
    23641 gaattagggc ttgaatatat agggcctatt gatggacata atttaggtga aattatttct
    23701 gcattaaaac aagcaaaagc tatgcaaaag ccttgtgtga tacatgctca aaccataaag
    23761 ggtaaaggct atgctttagc cgaaggaaaa catgctaaat ggcacggggt gggagctttt
    23821 gatatagata gtggagagag tgttaaaaaa agtgatacta aaaaatctgc tactgaaatt
    23881 ttttctaaga atttgcttga tttagcctca aaatatgaaa atattgttgg ggttacggca
    23941 gctatgccaa gtggaacagg tcttgataag cttatagaaa aatatccaaa tcgtttttgg
    24001 gatgtggcta ttgcagaaca gcatgcagta acttctatgg ccgctatggc aaaagaagga
    24061 tttaaacctt ttattgcaat atatagcact tttttgcagc gtgcttatga tcaagtgatc
    24121 catgattgtg cgattatgaa tttaaatgtg gtttttgcta tggatagggc agggatagta
    24181 ggcgaagatg gggagacgca tcaaggtgtt tttgatctta gttttttagc tcctttgcca
    24241 aatttcactc ttttagcccc aagagatgaa caaatgatgc aaaatataat ggagtatgct
    24301 tatttacatc aaggacctat tgcttttcgt tatcctagag ggagttttat tttggataaa
    24361 gaatttaatt cttgtgagat aaaacttggt aaggcgcaat ggcttgtaaa aaatagtagt
    24421 gaaattgctt ttttaggtta tggacaaggt gtggcaaaag cgtggcaagt tttaagagcc
    24481 ttgcaagaaa tgaataataa tgctaatttg attgatttaa tttttgctaa acctttagat
    24541 gaagagcttt tgtgtgagct tgctaaaaaa agtaaaattt ggtttatttt tagtgaaaat
    24601 gttaaaattg gcggtataga aagtttaatt aataattttt tacaaaaata tgatttgcat
    24661 gtaaaagttg ttagctttga atatgaagac aaatttattg aacatggaaa aacaagtgag
    24721 gtggaaaaaa atctagaaaa agatgtcaat agtttgttga cgaaagttt
//
LOCUS       DAPIWV010000011        24015 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.012, whole genome shotgun sequence.
ACCESSION   DAPIWV010000011 DAPIWV010000000
VERSION     DAPIWV010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24015
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.012"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..583)
                     /locus_tag="RJ272_000300"
     CDS             complement(<1..583)
                     /locus_tag="RJ272_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HDV7381433.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQD"
     gene            complement(580..1059)
                     /locus_tag="RJ272_000301"
     CDS             complement(580..1059)
                     /locus_tag="RJ272_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7381434.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            1190..1324
                     /gene="rpmH"
                     /locus_tag="RJ272_000302"
     CDS             1190..1324
                     /gene="rpmH"
                     /locus_tag="RJ272_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDV7381435.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            1321..1647
                     /gene="rnpA"
                     /locus_tag="RJ272_000303"
     CDS             1321..1647
                     /gene="rnpA"
                     /locus_tag="RJ272_000303"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDV7381436.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            1644..1985
                     /gene="yidD"
                     /locus_tag="RJ272_000304"
     CDS             1644..1985
                     /gene="yidD"
                     /locus_tag="RJ272_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDV7381437.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAEKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            1982..3568
                     /gene="yidC"
                     /locus_tag="RJ272_000305"
     CDS             1982..3568
                     /gene="yidC"
                     /locus_tag="RJ272_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDV7381438.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLISKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDVNQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            3572..4390
                     /locus_tag="RJ272_000306"
     CDS             3572..4390
                     /locus_tag="RJ272_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HDV7381439.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            4383..5711
                     /gene="mnmE"
                     /locus_tag="RJ272_000307"
     CDS             4383..5711
                     /gene="mnmE"
                     /locus_tag="RJ272_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDV7381440.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            5722..7908
                     /gene="purL"
                     /locus_tag="RJ272_000308"
     CDS             5722..7908
                     /gene="purL"
                     /locus_tag="RJ272_000308"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HDV7381441.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASAIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            7905..8675
                     /locus_tag="RJ272_000309"
     CDS             7905..8675
                     /locus_tag="RJ272_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HDV7381442.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSSKKELSLDEAFTILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEKLKIGVEKFQKINEAYEKVKKHLER"
     gene            8678..10210
                     /gene="purH"
                     /locus_tag="RJ272_000310"
     CDS             8678..10210
                     /gene="purH"
                     /locus_tag="RJ272_000310"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDV7381443.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRGFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            10309..10770
                     /locus_tag="RJ272_000311"
     CDS             10309..10770
                     /locus_tag="RJ272_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381444.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            11227..11760
                     /locus_tag="RJ272_000312"
     CDS             11227..11760
                     /locus_tag="RJ272_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7381445.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGSIQKATRMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            11776..11895
                     /locus_tag="RJ272_000313"
     CDS             11776..11895
                     /locus_tag="RJ272_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HDV7381446.1"
                     /translation="MQENVEVSEKNEEISKILLQVADELKIVCHNLESELNQF"
     gene            11911..12345
                     /locus_tag="RJ272_000314"
     CDS             11911..12345
                     /locus_tag="RJ272_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HDV7381447.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQDQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            12444..13421
                     /locus_tag="RJ272_000315"
     CDS             12444..13421
                     /locus_tag="RJ272_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HDV7381448.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            13418..14305
                     /locus_tag="RJ272_000316"
     CDS             13418..14305
                     /locus_tag="RJ272_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDV7381449.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            14302..15174
                     /locus_tag="RJ272_000317"
     CDS             14302..15174
                     /locus_tag="RJ272_000317"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HDV7381450.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFNKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(15186..16532)
                     /locus_tag="RJ272_000318"
     CDS             complement(15186..16532)
                     /locus_tag="RJ272_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDV7381451.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            16581..17924
                     /gene="pif1"
                     /locus_tag="RJ272_000319"
     CDS             16581..17924
                     /gene="pif1"
                     /locus_tag="RJ272_000319"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HDV7381452.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            17934..18668
                     /locus_tag="RJ272_000320"
     CDS             17934..18668
                     /locus_tag="RJ272_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381453.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGTNVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIELDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPS
                     VPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(18665..19174)
                     /gene="lolA"
                     /locus_tag="RJ272_000321"
     CDS             complement(18665..19174)
                     /gene="lolA"
                     /locus_tag="RJ272_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDV7381454.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLAAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            19274..21862
                     /gene="secA"
                     /locus_tag="RJ272_000322"
     CDS             19274..21862
                     /gene="secA"
                     /locus_tag="RJ272_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDV7381455.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNTPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            21859..23064
                     /locus_tag="RJ272_000323"
     CDS             21859..23064
                     /locus_tag="RJ272_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7381456.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSNNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            23087..23873
                     /locus_tag="RJ272_000324"
                     /pseudo
     CDS             23087..23873
                     /locus_tag="RJ272_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
     gene            23935..24010
                     /locus_tag="RJ272_000325"
     tRNA            23935..24010
                     /locus_tag="RJ272_000325"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23968..23970,aa:Lys,seq:ttt)
BASE COUNT         8620 a         2929 c         4348 g         8118 t
ORIGIN      
        1 aatcttgtat gaaatttttt tcataacttg gatttttttc tataaaatct aaatcataac
       61 ttggcattat gaaaaaattt ttataagcaa aaacttcacc ttttaaaatg tgataatctt
      121 taaatcccaa gcttttaaat gtgtattctc ctagacaaag caaaaaagca ggttgaatca
      181 gttttagttc gttccagaaa aatggtaagc aagattgtag cgaaaaatca tcaaattttc
      241 cattacaaaa acatttaaat aaataagaaa aataaaaatc ttcatcgcaa agccctaaaa
      301 tttgataaat atagtgtttt aatttttcac ctttttttga attaagtaaa attccgcttt
      361 cattttcact cttttgccca aaaacatcaa gaattagcaa tttgacattt tttatcttag
      421 gttccataag actaaatttt cttgttttgg aaaattggca taaggtgcaa gatgaaacaa
      481 gttgttttaa ttcttgaaaa ttttgtactt gttcaaagtg gtttgtatgt gtatcaacaa
      541 agttaaatcc catagctttt aaataataaa gacttcttat cataaatcac acaatttttc
      601 taaattttct ccacttagac gataatttct ccattgttta agatgtttag cgtttaaact
      661 ttcataaaaa ttaataccta aaatattatc atttaagcaa acccagtcga gtctttttaa
      721 attttctttt ttgcaaattt ctcctaaaaa tttaaacaca gcttttccat aacctttttt
      781 acgaaaattt tctcgtatat aaatatcttc aagataaatt ccaccgctgc cccaaaaaga
      841 cgaaaaagta taaaaataaa tcatatagcc tatagttttt tcattttctt ttaacaaaaa
      901 agcacgagca aatttatttt ttagtaaaga atgttccagt ttttcttttg tgcattgaag
      961 aaaatctaac atatcttcgt attttgcaaa ttctatgatc atttcttgta aaatatctaa
     1021 atcttcttgt cttaaatcaa taattttaaa ttctgacatt tttaaccttt taaaaataat
     1081 ttcaaaattt atcaaaagaa tttaaaaatt actcttaatc aaaagcaatt tataagtaag
     1141 attaagataa aatacaagtt tattttataa ttttttaagg aaaaatcaaa tgaaaagaac
     1201 ttatcagcca catggcactc caagaaaacg tactcatggt tttcgtgttc gtatgaaaac
     1261 taaaaatggt cgcaaggtga tcaatgcaag acgtgctaaa ggtagaaaaa gacttgctgt
     1321 gtgaaaaatt ttgataaatt tagcacaaac gaggaatttt catctgtata taaagtaggt
     1381 aaaaaatggc attgcgaagg tgtgattatt ttttatctga atagttatga aaaaaaaata
     1441 gcagttgttg ctagtaaaaa agttggaaaa gcagtggtta gaaatcgttc aaaacgaatt
     1501 ttaagggctt tgtttgctaa gtttgaaaga tatcttcaag atggcaaata tatttttgta
     1561 gctaaaaatg aaatcactga actttctttt tctaggttag aaaaaaatct aaaatgggga
     1621 ttgaaaaaac tagaatgttt caaatgatat gcctaaaaat actccgtttt tatcagaaat
     1681 tcttaagccc tttaaaaccc gctgcttgta ggtattatcc tagttgttct gagtatgcgc
     1741 tttggcagtt tcaaaaaaag aatttttttc tagctttttt ttctactttt tttagaattt
     1801 taagatgcaa cccttttttt aaagggggtt ttgattatcc tagagtttct aaaaattttt
     1861 atcctataaa tttatgtttt aagcctatat ttttagcaga aaaacaactt tgttttttat
     1921 atatacctta taaaaataaa agtttttatc ttataaaaat catctttaaa aggacaaatc
     1981 agtgaataat tcaaataata tttttcagca aaagcgtata cttttagctg ttgtgatttc
     2041 ttttttattt tttgttattt atgattattt tttcattcca aagcaacctt taaaaataga
     2101 acaaaacatt acacaaaaaa atcaacaaaa cacaagcata aataacactc ctaatataca
     2161 aaataccacc acaaatactc caagtgcggc tttagtttcg caagatagtg tgatatctaa
     2221 ggttcaaagc aagcattttg aagcacaaat tgactctttt ggtagaattt ctgcttttta
     2281 tttaaaagat agaaaatacc aaaatgagaa aggggaattt ataaatctta ttagcaagga
     2341 aaatagtcct tatcctttag aaatgcgttt tagtgatcca agtattaact cagaggcttt
     2401 taaaattcct tatgtcgcta acgctagcaa tctttttgtt gatgaaaatg gaagtcaagt
     2461 tttaaaactc actcaaaatc tttccggatt gaaaatcgaa aaagatatta ctttttatcc
     2521 aaaagggaat tatgagatag aagttaaact cagcaagaat gcaaattatt ttataagtcc
     2581 aggatatcgt ccaaatattg ccgtagatag ttatacggtt catggtgctt tagtaatgga
     2641 taataaagaa accatcgaaa cttataaaga tggagatgta gaaaaggatg aaagtgctaa
     2701 taatgtcgta atgacttcgg cttttgatag atactatgca actttctttt ataattttga
     2761 taaaccttta aatgtggcaa tcagcaagga tgttaatcaa aaccctatag tttttgctta
     2821 tagtgataat gaatttaaag cagggggcta tataggctct aaagaacatg tgattttaag
     2881 aagtatagat ccacgccttg aagcagttgt tgaatatggt tggtttactt ttattgctaa
     2941 gcctatgttt gagtttttga atttcttgca tcagtatata ggaaattggg gttgggctat
     3001 cgttgtgatg actttaattg tgcgtattat tttattcccg ctaacttata agtctatgat
     3061 ttctatgaat aaacttaaag atcttgctcc taaaatgaaa gatattagag agcgttataa
     3121 aggcgatcca caaaaaatga atatgcacat gatggagctt tataaaaaac atggtgcaaa
     3181 tcctatgagt ggttgtttgc ctatactttt acaaattcct attttctttg ctatttatcg
     3241 cgttttgctt aatgctattg agctaaaagc agctccttgg gcgttttgga tacatgattt
     3301 atcggtaatg gatccttatt tcattttgcc tattttaatg ggtgcaacga tgtttttaca
     3361 acaacttatt acacctatga ctatacaaga tcctatgcaa gctaagatta tgaaattttt
     3421 accagtgatt tttacttttt tctttatcac tttcccagca ggacttacgc tttattggtt
     3481 tgtaaataac ctttgttctt tggttcaaca atgggttatc aataaaatat ttgctaaaga
     3541 acatcacaaa aaaacaagcg gagcatgaaa aatgaaaatc gaagccattg atcttcaaag
     3601 tgccttaaca gaagcttcaa gaagtttaga atgttctgtg atggacttag aatatgagat
     3661 tattcagcat ccaagaaaag gtttttttgg atttggaaga aaaaaggcaa ttatagaggc
     3721 taaagcaaaa aaaaggattt tgaaaaaaaa tcctaaaaaa gaatttacaa gttcaaaaaa
     3781 tcacaaacca gaaacacatg agccaaaaca agaaaacaag attgaaacaa aaaatgaaaa
     3841 aaataaaagc caaaaagaaa aatatacagt aaaaagtgat gaaatttttg atagttttca
     3901 tcgagaaagc aaaggagtgc gtaatactca ggatatttta gatgagattc gcattcagct
     3961 tgtaaaactt ttagaaagct cccagtttaa aatagagctt agtgaactta gaatgtatga
     4021 tgaagattgc gttttgattc gattggatgg ggaagatgct gctttgatga taggtaaaga
     4081 agcacatcgt tacaaggcta tttcttatct tttacataat tggatcaatt taaaatataa
     4141 tcttttagtg cgccttgaga tcgctcaatt tttagaaaat caaattcaag gtatgcagct
     4201 ttatttacaa aacgtgattg aaaaaattaa aattcatgga cgcggacaaa ccaaaccttt
     4261 agatggggtt ttgataaaaa tcgctttaga gcagttaaga gctgaatttc cagataagta
     4321 tgtaggaatt aagcaaaata atgatcaaag atttgttgta ataaacgact ttttcaaaaa
     4381 agatgagtga tactatagcg gctattgcca cagctcatgg tgtgggttcg atttctattg
     4441 taagattaag cggtgaaagg gctttagaat ttgccttaaa gcttagccac aaaaccaaac
     4501 ttaccccacg ccatgctact tttacaaaac tttttaatca aaataatgaa attatcgatg
     4561 aagctataat gatatatttt aaagcccctt atagttttac aggggaagat atagtagagt
     4621 ttcaaactca tggaggattt agtgtgagtg aagttttact cgaagaactt gtgagtttag
     4681 gagcaagact tgctttagca ggggaattta gcaaaagagc gtgtttaaat ggcaaaatga
     4741 ctcctttaaa agctttaaat atacaagatc tcatactttc aaaatctgca cttgcagcta
     4801 aaattatagc acgcaacatg caaggaaact taggaaaact tttagaaaaa attcgcacag
     4861 atttggttaa aaccttggct tttgtagaaa ctagcattga ttatgctgat gatgatttac
     4921 cttctgattt attagaacaa atttctacta tgtgtgaaga aaattctaaa attttaaaag
     4981 aaatttatac actttctcaa agcaaaaaag gacttataga aggttttaaa atcgctattg
     5041 taggtaagcc aaatgtaggc aaatcttcgc ttttaaatgc cttgctttct tatgaaagag
     5101 ctattgtttc agatatagca ggcaccactc gtgatactat agaagagagc tttaaattag
     5161 gaacgcattt attacgcatt atagatacag caggtattag ggaaagtaaa gatgctatag
     5221 aacaaatcgg cgtagcttta agtaaaaaaa gtttagaaga tgcagatatt attttggcag
     5281 tctttgatgc ttcaagagtg caagataaag aagatgagaa aatttttgac ttattagcaa
     5341 atactgataa aaaaatcttt tggattttaa ataaaagtga tttagaaaat gttttcaaaa
     5401 atactcaaaa taaaaatttt atcaagctta gtgctcaaaa agacatcact ttattaaaag
     5461 aagaattgca aaattatttt aattcttttg atagcgaagg tattatggta agttctttag
     5521 atcttattaa tgcttgtaaa atttcaagtg aagcgatttt tagagctaaa gggcttttag
     5581 aggaaagttc tttagaactt tttgcttttg agcttaattt agcgattaat gaacttgcaa
     5641 gatttaccaa agattttcaa agagatgaaa ttttagacga aatgtttggt aatttttgtt
     5701 taggaaaatg aaaggataaa aatggacaaa gaaaccataa aagcacataa aatcagtgat
     5761 gaagaatatg cacaaatttt agaaatttta ggacgcgagc caaatttatt agaacttggg
     5821 gttatttctg cgatgtggag cgagcattgc tcttataaat ccagtaaaaa atatcttaat
     5881 ggttttccaa ctaaagcacc ttgggtgatt caaggcccag gagaaaacgc aggggttatt
     5941 gatattgggc aaggtatggc agcagttttt aaggtagaaa gtcacaatca tcctagcttt
     6001 atcgagcctt ttgcaggtgc ggctacggga gtagggggaa ttttgcgtga tgtttttact
     6061 atgggtgcaa gagtggttgc agggctaaat tctttaaaat ttggcaatat tcatgatgaa
     6121 aaatgcggca aacatcaaaa ataccttgtt aaaggtgtgg taaatggaat ttctcattat
     6181 ggaaattgta tgggtgtgcc aactataggt ggagaatgtg cttttgatga gtgttttaat
     6241 ggaaatatct tagttaatgc ctttgcttta ggggtttgta aaagtgaaga tatcttttat
     6301 gctaaggctg aaggtgtagg aaatcctgtg atttatgtgg gttcaaaaac agggcgtgat
     6361 ggacttggtg gagcggttat ggcaagtgat agcttcaatg aagaaagcaa atctttgcgt
     6421 cctacagtgc aaattggcga tcctttcagt gaaaaacttc ttatggaagc ttgtttagag
     6481 ctttttaaaa ctgattatat tgtgggtatt caagatatgg gtgctgcagg gcttacttca
     6541 agttcttttg aaatggcagg aagaagtggc agtggcatga aactttactt agataaaact
     6601 cctatacgtg aaagcggtat gactccttat gagttaatgc ttagcgagtc tcaagaaaga
     6661 atgcttattt gtgcgaaaaa aggctatgaa gataaggtta tagaaatttt caaaaaatgg
     6721 gatttagatg ctgtggttat aggtgaagtt accaatacag gaaaaatgga gcttttttgg
     6781 catgatgagc ttgtagggct tattcctatc gagcctctaa gtgaaaaagc gccgatttta
     6841 agtcgtccta taagtgagcc aaaatattta agtgaaatta aagattataa atttgagcta
     6901 aaattaagca ttcaagagct ttttatacaa atgcttcaaa atgaaaatat taacaacaaa
     6961 gcttttattt atgatcaatt tgattcaagt gtgcaaacca atactataaa agctgatgga
     7021 agattaggtg ctagtgccat tcgtatcaaa gaaaatggtg caagtgtggc tatggctata
     7081 gaatgtaact cacgcttaaa ttatgtaaat cctaaaatag gagcagcttt agcagtagct
     7141 tcagcaggaa gaaaagttgc ttgcacgggg gctaagcctt tggcaataag tgattgttta
     7201 aattatggaa atccgcaaaa tcctgaagtg atgtggcaat ttgcacaagg ttgcgaaggc
     7261 attaaagaag cttgtaaaga gttaaatacc ccagtagtaa gcggcaatgt ttcactttat
     7321 aatgaaactg aaggcgtaag tatttatcca agtcctacta tagtaagcgt aggggtttta
     7381 gaagatgcaa ataaaacctt aaaagctagt tttgaaaaag aaaatttaag tgtttatctt
     7441 ttgggtgaaa gtttagggga atttggtgga tctatggtaa tgaaaatcca agataaaaaa
     7501 gtatcaggaa gtcttaaaga gcttgattat aaagctgaaa ttgcactttg ggatttgctt
     7561 tataaagcca atcaaaattc tttacttgag tgtgccaata gcgtaggaat agggggtatt
     7621 gctatgactt tggcaaaaat gtttgctatt tctagtgtgg gtgtaaattt aacaagtggt
     7681 tttgatgatg aaaaaatgat ttttgatgag agtgcaagtc gtgctatagt agggcttagc
     7741 aaagaaaatg aagaagcttt tttaaattta gccaaagaat ttggagtaaa agcttataaa
     7801 ttaggtgtga gtacaagcca aaaacatttt aaacttgata acattgagtt aagcaaggct
     7861 gaacttgaca agctttattt tgaaagtttt aaagagcaaa tccaatgact ttagttttaa
     7921 ttatactcgt tattttggtg ttttactggt attataaaac ttggggaaaa caggattttt
     7981 taaactcagc tacaagagga gccaaaggct ttgctaaggg ttttgctcgt ggggttatgg
     8041 aagaaagaat ggatgagttt aaaaggcgta tgaattacta tgttatcgca cttttggcaa
     8101 aaattgcaaa aagtgatggt agggtaagtg aaaatgaagc tgaaatgatc aaagatcttt
     8161 tagatgcaaa tgccaaagat gaaaaagaaa gagctttttt aaaagcaagt tttaatgaac
     8221 ataaagaaaa tttaagtgat gctttttatg tggcaaaaga ttttttaaaa gaagtgcctt
     8281 tgcctaaaaa tgagcgtttt aatgtcttgc gtgtgcttgt ttttatggct ttaatcgatg
     8341 cagattttaa tgctaaaaag cgtgaaattt tagagcaaat cgctaaagcc tttgatatag
     8401 caaaaagcga attagacgct tttatagcaa gtctttcaaa tttaaaaagt tctaaaaaag
     8461 aattaagtct tgatgaagct tttactattt tagaacttcc aaataatgca gatttaaatg
     8521 cggtaaaaaa acaataccgc aatttagcaa aaaaatatca tcctgatatt ttaaatgcaa
     8581 acaatgttag tgaagaaaag cttaaaatcg gtgtagagaa atttcaaaaa atcaacgaag
     8641 cttacgaaaa agttaaaaaa catttagaaa ggtaaaaatg agagcattac ttagtgtgag
     8701 tgataaagaa ggcatagtag aatttggcaa agagcttgaa aatttagact ttgagattct
     8761 ttcaacaggc gggactttta agcttttaaa agaaaatgga ataaaagtta tagaagtgag
     8821 tgattttaca aagagtcctg agctttttga agggcgtgtg aagactttgc atcctaagat
     8881 tcacggtggg attttgcata aaagaagcga tgaaaatcat atcaaacaag caaaagaaaa
     8941 tgaaatttta ggcattgatc tagtttgtgt aaatttatat ccttttaaaa aaaccactat
     9001 catgagtgat gattttgatg aaattataga aaatatcgac ataggtgggc ctgcgatgat
     9061 aagaagtgca gcaaagaact ataaagatgt gatggtgctt tgcgatccgc ttgattatga
     9121 aaaagtgatt gagactttaa aaaaaggtca aaatgatgag aattttcgtt taaatttgat
     9181 gataaaagct tatgagcata cggcaaatta tgatgcttat attgcaaatt atatgaatga
     9241 acgctttaac ggaggttttg gagcgagtaa atttatagta gggcaaaaag tatttgatac
     9301 aaaatatgga gaaaatccac atcaaaaagg ggctttatat gagtttgatg ccttttttag
     9361 tgcaaatttt aaagctctta aaggcgaagc aagttttaat aatctaaccg atattaatgc
     9421 agctttaaac ttagctagta gctttgataa agctccagct attgctatag taaaacatgg
     9481 aaatccttgc ggttttgcta taaaagaaaa tttagtacaa agctatatac atgctttaaa
     9541 atgcgatagt gttagtgctt atggaggagt ggttgcaatc aatgggactc ttgatgaggc
     9601 tttagcaaat aaaatcaatg aaatttatgt agaagtaatc atcgcagcca atgtagatga
     9661 aaaagcttta gccgtgtttg aaggtaaaaa acgcattaaa attttcactc aagaaagccc
     9721 gtttttaatc cgcggttttg ataaatatga ttttaaacat attgatgggg gttttgtata
     9781 tcaaaacagt gatgaagtgg gcgaagatga gcttaaaaat gcaaagctta tgagtcaaag
     9841 agaggcaagc aaggaagaat taaaagatct tgaaatcgct atgaaaatag cagcgtttac
     9901 caaatcaaac aatgttgttt atgtaaaaaa tggcgctatg gtggctatag gtatgggtat
     9961 gacaagtaga atcgatgcag caaaggcagc aatcgctaaa gctaaagaaa tgggacttga
    10021 tttgcaaggt tgcgttttag caagtgaagc cttttttcct tttagagata gcatagatga
    10081 agcaagtaaa gtaggggtta aagctatagt agaaccaggc ggaagtataa gagatgatga
    10141 agtggtaaag gcggctgatg agtatggtat ggcgctttat tttacaggag taagacattt
    10201 cttacattaa gtttaatgga atgttatgtt ttttacacat aattcaataa aaattaaata
    10261 aattatgtgt aaaatatttc cgaaaaattt tatttttagg aaactatgat gtttaaaact
    10321 ataggattta aggtttctgc tgcaattttt gtggtgttgc ttataagttt cattgtaatg
    10381 caagtgattt taaatttgga ttttaaaaat actgccaata aaatgagcag ggcaaattta
    10441 aataccgtaa gtacttctgt ttttcaaaca atgagaatgg ctatgaattt aggagatcct
    10501 gaaaaaatta aagaagccat tgaagatgta aaaagtatag agggtattag tgatattaaa
    10561 atttatcctt caaaagatac tatagatctt tttgagatga aagcccctca aatttcaaat
    10621 gataagcgta ttatagaaca attttcaaat cctaaaattc aagctttaga agaaaatata
    10681 aatggtgttg tgtatttaag attgatacgc cctttgattg cagatgaaag ttgtgttact
    10741 tgtcatgaaa tgctaatgca ggaagtgtga ttggggttat ggatatatca cattctttag
    10801 aaggtgttta aaaagatata agcaaaaccg gtcaatctta tattataata tttactattg
    10861 ctttgatttt taccctttgt ggtggttctt ttaatgctta aagttgttgt tggaaagccc
    10921 gttttagagc ttttaaatca tgctaaagaa ttagctcaag gaagcggcaa ttttaaaagc
    10981 tcgtatttca gttaaaggtc aagatgaaat tgctttagct tgtggatata tcaatcaatt
    11041 tatcgaaaaa actcacaagg cagttagcag tgcaagtcat aatttaaaaa atgtagaaaa
    11101 acaaagcaat cttttaaatt caaatgctat tttttaagtg atatcagttc acaaagtcat
    11161 aagcaaatag atcaaagttt taaacttggt gcaaatgttg gtaatgaact tagagaactt
    11221 gctagtttgt caaataaggc aaatagtgcc aatgaaaaat cctttttatt attagagcaa
    11281 atgcttaaat ctttgtttaa tgttgctaat aaagtatcaa tagtatccca aaatgaaaat
    11341 gaattggcta aaaaagttga aaacatggtc aatcaagcag gtagtataca aaaagcaact
    11401 cgaatgatgg ataagatcgc agataaaaca aaattaccat ccctaaatgc tggcatagaa
    11461 gtagctaggg ctggtgcatt tggactaggt ttttctgtaa ttgctgagga tgataggcag
    11521 ttggctcaga acagtgaaga atttttggga aatgtagctc aaattacaaa agagcttttg
    11581 caaagtatta atgaggttaa cgcagaatta aagaaaaata ctcaaagtat acaagcttta
    11641 aatgatgaca ccgctttatt ggttgatgat gctaatgagg ttaaattatg taacgaagat
    11701 gctagggctt tggtaactca atgtactgaa aaaataaaaa tttcccaaga gaatatataa
    11761 aatttacttt ctcgtatgca agaaaatgtt gaagtaagtg aaaagaatga agaaatttct
    11821 aaaattctac ttcaagttgc agatgagtta aaaatagtgt gtcataatct cgaaagcgaa
    11881 cttaaccaat tttaaattta aaggaataaa atgaaaaaaa cgcttcaaat tgctttagct
    11941 gcaacttttt ttgcaggttg tgctagtact tctgttactt catctacttc taaaggtaat
    12001 aatgaacttg tacaagatca gcttttcaaa atagaaaaaa ttatagttaa tggtaaaact
    12061 tttgatccaa aaaacgcaga ggaaagtcca aatattagtt ttgaaaataa taaattttat
    12121 ggttattcag ggtgtaatcg tttttttggt tcttaccaaa ctaaggcgga tactttgcaa
    12181 atcgaaggtg atcgcgtagc ttcaactcaa atgctttgtc atccaatgga tgtaatggat
    12241 tttgaaaatt ctttcctttc aaatttcaaa ggaattttta aaatttcaaa tgaaaatgga
    12301 aaacttgttt taagtaatga tgaaatgaag atctttttta aataataccc taaagcctcg
    12361 aaatatcgag gtaatcttct taaatttgac aaaagtctaa aaaatgatac aattataatt
    12421 ttattatcaa aaaaggtagt taaatgataa aatcaattcc tgaatggagt gagcaagaat
    12481 acctcatgct ttctttaccc catgaaaaaa gcgattggaa tccctactta gaggaaattt
    12541 tgcaaagtta taaagaattt gtaaaagtgg taagtgaatt tcaaaaagtt ttacttatag
    12601 ctcctaaaca gagtgatttt gaaaatttta aagatataaa aaatgtagag tattttaaat
    12661 gtgataccaa tgatacttgg atacgcgatt ttggagctat agatatagta gaaaatggtc
    12721 gtttaaaagc tcttgatttt acttttaacg cttggggaaa taaatttcaa agtgagcttg
    12781 ataatgctgt aaattctaag ctttttaaag aaaaatttaa agaggagctt aaaaaggttg
    12841 attttatttt agaaggagga agtattgact ttaatggaga gggtgtgatg cttacaagct
    12901 ctcattgtct tttaaatgaa aatagaaatt ctcatctaaa caaaacccaa attgatataa
    12961 aattaaaaga aatttttggt ttaaaacaaa ttatttggct agaaaatggt ttcataaaag
    13021 gtgatgatac ggatcatcat atcgatacct tagcaagatt tatagataaa aataccatag
    13081 cacattgtat ttgtgaagat gaagaggatg agcattattt gcctttgcaa aaaatgaaag
    13141 aagagcttaa aaaaacaggc tttgatttag tagaacttcc tatacctaag cctttatact
    13201 atgaaggaag aagattgggc gcaacttatg cgaattttgt ttttataaat aatgctttaa
    13261 ttgtgccttt ttataaggat aaaaatgatg aaatcatagc taaaagactt tctaaagctt
    13321 tacctagtca taaaattata ggagtagatg caagagtgtt tttacgacaa aacggttctt
    13381 tgcattgttc ttgtcaaaat cgtttcaaag gtttaagatg agtttgcaaa aaaaagcaac
    13441 tcttgtagca agtttatgtg ccattgtttt agccttggtt aaatttatag taggcttaac
    13501 aagtggttct gttgcagtac tttcaagtgc gattgattct ttaatggatt ttgctatttc
    13561 tgcttttaat tttttggctc ttaaaaaaag ctcacaaaag gcgaatgaaa attataattt
    13621 tggtttttct aaaattgaag ctttaatggg tttgttagaa ggtgttttta tagttggcgt
    13681 ggggattttt attttttatg agagtatttt aaagatttat tataaagaag aaattaaaga
    13741 tttaaattca agcatctatg tgatgatttt tgctttaatt atgacttttt ttcttgtact
    13801 ttttttaaat tatgtagcta aaaaaaccaa aagtttgatt atagaaagtg atgctttgca
    13861 ttacaaaaca gattgcttaa ccaatgcttg tactttaggg gctttggttt tgatttattt
    13921 tacaaattta catattattg atgctatttt tgggatagtg atcagtcttt atacggcatt
    13981 ttctgctttt aaaatcatta aaaaagcttt agctttttta atggatgagg ctttacctaa
    14041 ggaacaagtg gataaaattt gtactttgat ttctaataat cctgaaataa tttcctatca
    14101 tgaattaaag acgcgtaaaa ctccaagttg taattattta agcgtgcatt tggttttttg
    14161 ccctataatt tcgcttttaa atgcgcataa aatttcagat gaaatagaag aaggtgtgcg
    14221 taagatgttt gaaaatgaaa aatgggatat acaaattcat ttagatcctt atgatgatgc
    14281 agaacaagaa aggcaaagac aatgaaaatc gctttaatac aacaaaaatt tcatttaaat
    14341 aaagaacaaa ctataaaaaa aacttgcgaa tttatagaag aagcctctaa acaaggagct
    14401 gagcttgttt gcttaggaga acttcatcaa agtgagtatt tttgtcaaag tgaaaatgtg
    14461 gatttttttg actatgctaa tgattatgaa aaagatgtga aattttgggc aaatatagct
    14521 agaaaaaatc aaatagtgct tattgcttca ttgtttgaaa aacgaagtgc cggactttat
    14581 cataatactg cagtggtttt tgaaaaagat ggttctatag caggcaaata tcgcaaaatg
    14641 cacatacccg atgatccttg tttttatgaa aaattttatt ttactcctgg agatttgggt
    14701 tttgaaccta taaatacaag tttaggtaag cttggagtgc ttatttgttg ggatcagtgg
    14761 tatcctgaag cagcaagaat tatggcttta aaaggagctg agattcttat ttatcccacg
    14821 gcaattggtt ggtttaataa ggataaagat gaagaaaaac aaagacagct caatgcttgg
    14881 cttggcgtac aaaaaggaca tgctatagct aatggtttat atgtagtagc tatcaatagg
    14941 gtaggttttg aaaaagatgt aagcggggta gaagagggca ttagattttg gggaaattct
    15001 tttgtttttg gccctcaagg tgaagaactt tgtcttttag attctcaaaa cgaatgtgta
    15061 aaaatcatag aaatagataa aaaaagaagt gaaaatgtgc gtcgttggtg gccttttttg
    15121 cgagatagac gcatagaata ttttgcagat ttaactaaaa gatttattga ttaaatcaat
    15181 aaatcttatt tgttttgtat attttcaaga tagcttttta tttgctcttt ttcttgttcg
    15241 tttaaattta taaaacttat ttctttaagt cttgataaaa gcaaattatc ttctaaaatt
    15301 tcattttttc ctatttctaa agaagtgatg acgctagaac ttatgagaag tctttgggtt
    15361 gcatcttttc ttaagcccca tatattatgt atggcaatat tattatctgt aatttgtcct
    15421 gcataaagca taatatgtcc aggtaaataa agtaaactaa gataagcttt cccaaagcgg
    15481 tttaaaaaat cttttttttg agaattgcta agagtgctta tatcaaaatg attaaaagaa
    15541 tttttttgtg cagctgaatt tcttggtaga taaagtccaa aagctgaaaa gatatcacga
    15601 gttagtaaag aacaatctct ttcaaaatta taaccgcccc agccataagg caaatttaaa
    15661 acttgtgaaa gttgattttt taaattttta tcattgaatt gtaaaggaaa tttagataca
    15721 tcttttttag aaattttata ttttttagaa cctatttttc cataaaaata gtttttatct
    15781 tctttgtagt aaggatagat agcaccaatt ctactttcaa agaaaaattt accatcctcg
    15841 ctatagatag caaatttttc ttttagtggt gtgataaagt tgagattttc atagattttc
    15901 gctctatcgt ttgagaaaaa ttccaaattt ttactttcaa caaatccaaa tccagcttca
    15961 cctaaaacaa aagcataacg cttatcttta ctaaaatgtg aaattaagac aggggctcca
    16021 gtatttaaaa tgccatcgct tgcatagtca aaaggaattc cttcattttc aaaaaaagga
    16081 ttttttaaga tagctctttg ggttggaaga tttttaatga ttgtattttg gataatcaaa
    16141 gctttttgat taagtttgcc aaattcttgg atatttgcgt tatttatagc atttttaaac
    16201 catgaaagcg gaataatttg tttattgaaa aaataataag tattttttga atttaaatat
    16261 aaaggaaagg accaaaaaat attttgtcct ttgtagtttt taaatgaatc atgccaaggg
    16321 ttaaagaaat attttttata tcgttttgca tcaaaattaa tattgtaagt aaattgtggt
    16381 aaaatgctta cattttgttc gtattcaagt tttgcataat gttgattttc atttttttgt
    16441 tctaaatttt catgatgaag cgaagttaaa ttttttgttg aacaagctgt taaaaatagc
    16501 actataaaag taaaatataa acaagatttc ataatcaacc ttttagaaaa aatagttata
    16561 attaaagcta aggaaatata atgcttgata aactagaaaa aattttagct tatgataatg
    16621 tttttttaag tggtggcgct ggagttggta aaagcttttt gacaaatgag cttatcaaat
    16681 cttatagaaa acaaaaaaaa ttagccatag ctcttggttc tagtgctcta tcggcgttta
    16741 atataggcgg tgttacttta cacagctttt tttgtttagg gtattgtgat gatatgatga
    16801 aattaagcgc attggatcgc aatcaaaaac aaaaagaaaa attaacaaaa cttaaagagc
    16861 ttttaaaaac gattgagctt attattatcg atgaaatttc catggttagc gcaaatgttt
    16921 ttgaaatgat aggctttaga cttaaaaatt ctcaatttaa tggaaaaatt ttagttgttg
    16981 gagatttttt tcaactgcct ccagtaatta aagaaaaaaa agaaacttta tttaaccatt
    17041 cttattatgc tttttcttca tttttttggc aagatttaaa ttttaagaat attaaacttt
    17101 ctcaacctaa aagaacgcaa aatatggaat tttataacca tttatctttg attagacaag
    17161 gttttttaga tgaaaaaatt ttaagctttt ttgaatcttt gcgaattgat tataaagaat
    17221 tagaaaattt agaagatgat tatactttac tttgtggtat caataaaaaa gtaaacaata
    17281 tcaatcaaga aaaattaagc aaacttgaga ccccgcttgt atgctttaag gctcaggtta
    17341 aaaaagaaga taagagaata aaagatgaag agcttgattc ttggattaga agcttaaata
    17401 tattggaaga attaaatatt aaaataggcg ctcgtattat tttttgcgta aataattggg
    17461 ataagaatta ttataatgga gagcaaggta ttatagaaga tattctttat gaagaggaga
    17521 aaatttatat tagcattatt aaaaataatg ggatgaaaat tttacttgaa ccttatactt
    17581 ttttcatgga agaacttgag caatcaggta aagattttgt tgttaatatt ctcgcaagtg
    17641 ttacacaatt tcctattaaa ttagcttatg ctattactat acacaaatca caaggtatga
    17701 gtattgaaaa attagtgtgt gatattgatc atatttttga aaatggacag ctttatgtcg
    17761 ctctttctcg cgctacaaac ccaaatactt taaaaattta ttctacaaaa aagataaatt
    17821 ttggatttta ttttgctaat attttaaaaa tagattctaa tgtgattgaa ttttataaaa
    17881 aacataattt tttagatctc gaaatacaag aacaaatcat ttaaaggcat taaatgaaaa
    17941 aaatattttt aagtgttttt ttggttttga gtttaaatgc tcaaaatctt gaaatagata
    18001 aaataagaac agatttgtat tctaaaagtg ggacaaatgt tcttaaaaaa gtcgaaattt
    18061 ctttggaatt tgatgggaat aatttaaaag aaaatgaaaa taagttaatt gatgctgtaa
    18121 atacagtaat ttcagggttt ttttacgaag atatttttac agaaattgga aaaaataatt
    18181 tcaaaaaaac tttagaaaaa tttttagata agaagtataa gattgaatta gatgatatat
    18241 atatcatatc tttaagcgga gtggaaaaat ttgatttaga ggagtttaaa cgctttttag
    18301 aaagtactga ggctaaagag aagggtatgg gtagcgaggt aaaaaaagca cttgaaaact
    18361 tagaagttcc taaaactcaa gttcctagtg ttgaaaagat cccaactcct agtgttccaa
    18421 atttagaagt caagcaagtt gaacagcttt tcaaagatcc agatgaagaa aataaaaatg
    18481 acaatggaga aatcaatata gataatttaa atacacctaa aatgactcca gatatagaag
    18541 aaaaaattaa aagagattta atcgccaatc ctccacaaat attcaaagaa aataacgcaa
    18601 gcaagcctta tcatttgcca caaacaggct atgatataaa gcttgatgaa aattcaacgc
    18661 aaaattagcg aactatatca taattttgcg gaatttttgc cttgaaaata tcggagttga
    18721 tttttggatt tttaatttga ttgtttagat tgattataac atcattttca aattcatctt
    18781 tataggatat gctttgaatt tgctcttgat taagcttaat tgtatagttt atattatcat
    18841 attttgctgc aagtttatcc ttatctataa gacttgcttt tttgaaaatt tcattaagat
    18901 ttggaatgtt atcaagatga gagaaaatga cttgttctag atcgtgctct actatggtta
    18961 cttgattttt gttgatataa atctcttttt tactaggagt atcataactc caatatgctt
    19021 gatctttgct cagtataaaa tgcccagaat aagaaagtgt agagtttttg gatttcacta
    19081 tttgggtaaa attgcttgaa aaggtattaa aattaagatc aagggcaaaa agttgtccta
    19141 taaaaataaa aaatatcaag aatgtttttt tcatttattt tccttaaaaa aatatatttt
    19201 ttatgtcatt ctagctaatt ttaattaaat aatcgttata atgatagttt gaaaaattta
    19261 taaaggttta aaaatgtttt taaatacttt aaaagccgtg tttggcacaa aaaatgatcg
    19321 tgaagttaag aaatatttca agcgtgtagc acaaatcaat gctttagaag gcaactatca
    19381 aaatttaagc gatgatgaat taaaagccga atttgcaaaa tttaaagagc aaattttaag
    19441 cggagaaaaa aacgaaaatg atgttttaaa tgatgttttt gctatagtca gagagacagg
    19501 taagagaact ttaaatatgc gtcattttga tgtgcagtta atcggtggta tggttttgca
    19561 cgatggaaaa atcgcagaaa tgaaaacagg agaaggtaaa actcttgtag caaccttacc
    19621 tgttgtttta aatgccatga gtggcaaagg cgtacatgtc gttacagtaa atgattatct
    19681 agccaaaaga gatgctgagc aaatgagtgc gatttataat tttttaggtt ttagtgttgg
    19741 cgtggtgctt tcttctcaaa atagtgatat agaacacaag caagcttatg attgtgatat
    19801 tacttatgga accaataatg agtttggttt tgattatttg cgtgataata tgaaattttc
    19861 aaaagctgaa aaagttcaaa gagagcataa ttttgttatc gtagatgaag tagatagtat
    19921 tttaattgat gaggcaagaa ctccgcttat catcagtggt cctacaaatc gtactttaga
    19981 tggttatatt aaagccaatg aagtagctaa acaaatgcaa aaaggtgaag cagttttacc
    20041 ccctgcaaaa cctgagggtg attttgtagt agatgagaaa aatcgtaata ttttaattac
    20101 agaagcaggt attgctaagg ctgaaaaact ttttggcgta gaaaatttat acagtcttga
    20161 taatgctatc ttagctcatc agcttgatca agccttaaaa gcacataatc tttttgaaaa
    20221 agatgtgcat tatgttttaa gaaataatga agttatcatc gttgacgaat ttacagggcg
    20281 tttaagcgaa ggacgtcgtt ttagcgaagg attgcatcaa gctttagaag ctaaagaaaa
    20341 tgtaaaaatt caagaagaaa gccaaactct agcagatatt acttttcaaa attattttag
    20401 aatgtacaat aaacttgcag gtatgacagg aactgcacaa acagaagcga ctgaattttc
    20461 tcaaatttat agtttagatg ttatttctat accgacaaat attcctatta aaagacaaga
    20521 taaagatgat cttatctata aaactcaaaa tgaaaaattc aaagctgtaa ttgaagagat
    20581 taaaaaagcc aatgctaaag gtcagcctgt acttgtagga accgcaagta tagagcgcag
    20641 tgaagttttt cacaatatgc ttgtaaaaga gaaaatccct catcatgttt taaatgctaa
    20701 aaatcacgag caagaagctt tgattatcca agatgcaggt aaaaaaggtg ctgtaactat
    20761 cgctacaaat atggcaggtc gtggtgtgga tataaaaatc gatgatgaga ttagggcttt
    20821 gggtgggctt tatatcatcg gtacagaaag acatgaaagc cgccgtattg ataatcaact
    20881 tcgtggtcgt gcaggaaggc agggtgatcc tggaataagt cgtttttatc taagtttaga
    20941 agataatctt ttaagaattt ttggtgggga tcgtattaaa agtattatgg atcgcttggg
    21001 catagaagag ggcgaaagca tagaatcaag aatcgttaca agagcggttg aaaatgcgca
    21061 aaaaaaagtt gaaagcttgc attttgaaag cagaaagcat ttgttagaat acgatgatgt
    21121 agcaaatgaa caaagaaaaa ctatttatcg ttatcgtaat gagcttttag atgaaaacta
    21181 tgatattaga gctaaaattt ctcaaaatat cgctgaatat agcgcaaatg taatgaatga
    21241 ttatatgctt gacgaaagcg gttctaatgt aaattttgaa aatttgaaag caaaaatttt
    21301 gtatgaatgt tcaactcaga ttagtgaaaa agattttgag aatttaagcg tcattgaaat
    21361 gcaagacaag ctaagtcaaa ttcttgaaaa ttcttataat gaaaagatgt taagacttga
    21421 gattaaagaa ttgcgtaata tagagcgtat tttatatttg caagttttgg ataatgcttg
    21481 gagagagcat ttgtatcaaa tggatatttt aaaaacagga ataggacttc gtggatacaa
    21541 tcaaaaagat cctcttgtgg aatataagaa agaaagttat aatcttttct tggagttggt
    21601 caatcgtatt aaatttgata gtattaaact actttttagc gtgcaattta atcaagaaga
    21661 ggcgcaaaat ttagaaaata aagccaatga agaaaatgaa aagctacttc aaagctcagt
    21721 agaaatgggc gcaagcgaag ataatcttgg cgaagctgaa tttaaaaaag ttccacgcaa
    21781 tactccttgt ccttgcggaa gtggaaaaaa atttaaagaa tgccatggaa aaagtggtcc
    21841 taagcaagga attttagctt gaataaaagc gttttaaaat atttactttt taagtattta
    21901 agatttgata aagagcaacc ctttatcaat ctttctatgc ttttggcctt tttaggagtt
    21961 tgtgtaggac tttgcgtttt gcttgtagct atggcaatta tgaatggttt tgataaagaa
    22021 tttgaaaaac gcttttttgt gatgaattat cctattacta ttttgcctaa attctatgct
    22081 cctgtaaatg atgaatttat agatgagtta agaaaaacat ttccaaattt gttatttagc
    22141 ccttatttaa gcactcaagt tgttgtaaag ggagataatc gttttgaagg tggtgtgctt
    22201 tttggcgtta attttaatga tgaaaaaaaa ataaacgaag tggttgctaa agctttaaag
    22261 gatgagaatt taagtggttt tgatatactt gtaggatcag cacttactga tgaatttggt
    22321 ttgcataaaa atgacaaact ttcacttatt ttttcaaatc ttaatcctag tggattttct
    22381 ttagtaccgc aaactaaacg ttttgatgtt aaagcgcgtt ttacttcagg gcttgcattt
    22441 tatgataaag cttatatgta cacagatgtt gatgcattga aaaaagtact tggaatacct
    22501 aaaaatccaa attatgatgg aattcatgta tatagcaata atgcttttaa ggatgttgaa
    22561 aaaattaaat cttatttaaa agatgattat gctgtggtgg gttggtggga gcaaaataaa
    22621 aatttttttt cagccttaga acttgaaaaa agagcgcttt ttatagtgtt gatgcttatt
    22681 attttggttg caagtttaaa tatagtaagt tctttattga tgatagtaat gaatcgtcgc
    22741 agtgaaatag cacttttact tgctctaggt gcaagcaaaa atgaggtaaa aaagagtttt
    22801 tttgccttag gtatgcttat tggtggtggt ggtatgatag tgggtgtggt acttgcattt
    22861 tttgctttat ggcttttggg aaattttgat attgtaactt tacctgttga tgtttatgga
    22921 accagtaaat taccacttga tttgtcttta atggattttt ctttaaccat tgtgggtgct
    22981 ttaataatca tagctttatc atctttttat cctgcaaaaa aagcaactca aattaatatt
    23041 ttagatactt taagaaatga ataaattgta attttggaga tttttattgt ctttgtttac
    23101 tcaaaaaaat aagaatttta aacctttaaa acctctatca aagtcaaaaa taatcactaa
    23161 tttaattctt ttgattttat ttttaatatt gttttgttat tgtagtttta gtataagtgc
    23221 ttatcatttt gattttagcg caattgcaac ctataaagaa aaatttcttc aaggtttttt
    23281 aaatacttta ataatcagtt ttttttcttt attactgagt ataattttgg gtggagtttt
    23341 ttgtgctttt tctttaagtt caattgtttt tttaagattt ttatctacat tttacataga
    23401 gcttatcaga ggaacccctt tactagtgca ggtattattg atgtattata tcattgcaaa
    23461 taatttagga cttgataatc gatatgtggc tggagttatt attttatcat gtttttctgc
    23521 tgcttactta gctgaaatat ttagagctgg aattttaagt atttctatat ctcagcttga
    23581 gagcgctagg gctttagggt taaaagagat gcaggttttt gcgtatgtaa tttttcccca
    23641 agctttaaaa aatattttag caccgctgag tggacaattt gcaaatttaa tttaaagata
    23701 gttccttatt aagtgttatt gctgtaaatg aattaaccca aagtgcgcaa gagataaatt
    23761 cttatacttt tgctactctt gaagcttatg taattttggc tattacatat cttattttga
    23821 ctttacctat aagtatattt tctcgttatt tggagagaaa atgccaaaaa tgatttaaaa
    23881 aagcttgaca aatagagcta attttggcat aatcacattt ttatttcaga aaatgtctcg
    23941 ttagctcagc cggtagagca tctccctttt aaggaggggg ccgttggttc gaatccaaca
    24001 cgggacacca ttata
//
LOCUS       DAPIWV010000012        23812 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.013, whole genome shotgun sequence.
ACCESSION   DAPIWV010000012 DAPIWV010000000
VERSION     DAPIWV010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23812
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.013"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            63..710
                     /locus_tag="RJ272_000326"
     CDS             63..710
                     /locus_tag="RJ272_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDV7381457.1"
                     /translation="MKKGIFLLVFLSIFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            727..3102
                     /gene="lon"
                     /locus_tag="RJ272_000327"
     CDS             727..3102
                     /gene="lon"
                     /locus_tag="RJ272_000327"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDV7381458.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDLSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(3162..3422)
                     /gene="rpsR"
                     /locus_tag="RJ272_000328"
     CDS             complement(3162..3422)
                     /gene="rpsR"
                     /locus_tag="RJ272_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDV7381459.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(3433..3981)
                     /locus_tag="RJ272_000329"
     CDS             complement(3433..3981)
                     /locus_tag="RJ272_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7381460.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPTPQRNQNPQ
                     HEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(3990..4367)
                     /locus_tag="RJ272_000330"
     CDS             complement(3990..4367)
                     /locus_tag="RJ272_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDV7381461.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(4454..5300)
                     /locus_tag="RJ272_000331"
                     /pseudo
     CDS             complement(4454..5300)
                     /locus_tag="RJ272_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
     gene            complement(5293..6399)
                     /gene="rseP"
                     /locus_tag="RJ272_000332"
     CDS             complement(5293..6399)
                     /gene="rseP"
                     /locus_tag="RJ272_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDV7381462.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLSKLAPQIGSIAPNSAAQDIGLQ
                     KNDTILEINGIRIQSFDEISKHLSLEPLKILIDREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKI
                     PQRAFEYLSYAGMAILLSLMLFATYNDISRIAGE"
     gene            complement(6396..6932)
                     /gene="pgsA"
                     /locus_tag="RJ272_000333"
     CDS             complement(6396..6932)
                     /gene="pgsA"
                     /locus_tag="RJ272_000333"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDV7381463.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(7058..7663)
                     /locus_tag="RJ272_000334"
     CDS             complement(7058..7663)
                     /locus_tag="RJ272_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7381464.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNIASCTIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(7663..8283)
                     /locus_tag="RJ272_000335"
     CDS             complement(7663..8283)
                     /locus_tag="RJ272_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7381465.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSDSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDDFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            complement(8348..8768)
                     /locus_tag="RJ272_000336"
                     /pseudo
     CDS             complement(8348..8768)
                     /locus_tag="RJ272_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(8780..9868)
                     /locus_tag="RJ272_000337"
     CDS             complement(8780..9868)
                     /locus_tag="RJ272_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HDV7381466.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            9967..12720
                     /gene="ileS"
                     /locus_tag="RJ272_000338"
     CDS             9967..12720
                     /gene="ileS"
                     /locus_tag="RJ272_000338"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDV7381467.1"
                     /translation="MDYKETLLLPSTSFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLYEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDEFFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDTGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLKV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            12714..12824
                     /locus_tag="RJ272_000339"
     CDS             12714..12824
                     /locus_tag="RJ272_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381468.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            12821..14182
                     /gene="gatA"
                     /locus_tag="RJ272_000340"
     CDS             12821..14182
                     /gene="gatA"
                     /locus_tag="RJ272_000340"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HDV7381469.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKVKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            14192..15649
                     /gene="guaB"
                     /locus_tag="RJ272_000341"
     CDS             14192..15649
                     /gene="guaB"
                     /locus_tag="RJ272_000341"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDV7381470.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            15646..15819
                     /gene="xseB"
                     /locus_tag="RJ272_000342"
     CDS             15646..15819
                     /gene="xseB"
                     /locus_tag="RJ272_000342"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDV7381471.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            15812..16594
                     /locus_tag="RJ272_000343"
     CDS             15812..16594
                     /locus_tag="RJ272_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HDV7381472.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKIIKEFKN"
     gene            16715..18013
                     /locus_tag="RJ272_000344"
     CDS             16715..18013
                     /locus_tag="RJ272_000344"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDV7381473.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLGDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKNLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQQYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYTAGEEPIGLDLEAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            18006..18356
                     /locus_tag="RJ272_000345"
     CDS             18006..18356
                     /locus_tag="RJ272_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381474.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            18346..20556
                     /locus_tag="RJ272_000346"
     CDS             18346..20556
                     /locus_tag="RJ272_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HDV7381475.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLVKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGAGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            20565..>23812
                     /locus_tag="RJ272_000347"
     CDS             20565..>23812
                     /locus_tag="RJ272_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7381476.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLHEMLSKNSKALRVVDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNESF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLTELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLIDMMDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWN
                     GDIKWLTISDYSNRQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGE
                     DMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKP
                     PLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNS"
BASE COUNT         8624 a         3163 c         4151 g         7874 t
ORIGIN      
        1 gaagaacata attataaaat cgttaaaata tatatttttg agaatataaa tcaaggtgaa
       61 gtatgaaaaa aggtattttt ttattggttt ttttaagtat tttttttagt gcgtgtagta
      121 cgaaaaatga tgaaggttta tacaatctta gtgctagtga gtggtataag caaattatta
      181 aagatttgca ggacaaggat ttggaaaaag ctgatgatca ttataatggt atggcaagtg
      241 agcatgttgc cgatccttta ttagaaacta ctttaattat tttagcacaa gctcatatgg
      301 atgaagagga atataagtta gctgaatttt atttagatga atataataaa aaatttggaa
      361 attcacgcaa tgctgattat attcgttatc ttaaaattaa ggcaaaattt gatgcatttg
      421 cagtgccaaa tcgtaatcag gctttaatgc ttgaaagcca aaaagaaata gatacttttt
      481 tgaaagatta tccttataca gaatatgaac ctttggttca aacaatgctt acaaaattta
      541 atttagcggt tttttatctt aatagtacta tagaaaatct ataccagcgc atagggcatg
      601 atgaaagtgc acaaatttat aaacaaagac ttcaagaaag tgaattttat cagcaaagta
      661 ttatcaaacc tgagcttcct tggtatagaa gtatatttga aagattttaa taaacaagga
      721 aaataaatgc agattgaaga gatacaaaat tatccagcaa atttaccagt attggttgaa
      781 gatgaattat ttttatatcc ttttatgata actcctattt ttattaacga tttatccaat
      841 atgaaagctt tagatctcgc gattaaaaat gatagcatgc tttttgttgc accttcaaag
      901 ttggaaaatg gaagaaattt tgatgaaatt tataattgcg gagtgattgg gactatcatg
      961 cgaaaagttc ctttgcctga tggaagagtg aaaatacttt ttcaaggata tgccaagggt
     1021 aaaattatag agcaaatttc taataaacct ttagaagcca agatagaact tataaaagaa
     1081 gactttttag aaggaactaa aaaagaagca cttcttgaag ttttaaaaga gaaagtaaaa
     1141 aatttggcaa atattagtca ttatttttct ccagatcttt taagaacaat tgaagaaggt
     1201 tttgatgcat ctaggatttg cgatttgatt ttaaatactg tgcgtattaa aaaacaagtt
     1261 gcttatgagt tttttgtttt aacagatctt gagcaaaaat tagtaaaatt aatagattta
     1321 attgctcaag aaatagaagc taataaaatt caaaaagaaa ttaaaaataa agtacattct
     1381 cgtattgata aggtaaataa agaatatttt ttaaaagaac aattaagaca aattcaaaaa
     1441 gagcttggtt ctgatacgca aaaagaagat gaggttagag agtatcaaaa gcgtctggag
     1501 ttaaagaaga aatttatgca cgaagacgct tataaagaaa tcaaaaaaca aattgaaaaa
     1561 ttcgaacgca ttcatcaaga taattccgaa gcatcgatga ttcaaactta catagaaaca
     1621 gcattagatg ttccttttga aaaaatttct aagaaaaaac ttgatattaa ggaagtttca
     1681 aaacagctca accatgatca ttatgcatta aataaaccaa aagaacgcat agaagaatat
     1741 tttgcagtta gggagctttt agaaaaaaga aaaatagcag aaaaagatgg tgctaaagtt
     1801 atactttgtc tttatgggcc tcctggcgtg ggtaaaactt cactggcaaa ttctgtttca
     1861 aaagctttaa aaagagagct tattcgtata gccttaggtg gacttgaaga tgttaatgag
     1921 ctgcgtggtc atcgtagaac ttacataggc gctatgcctg gacgtattac tcaaggactc
     1981 atagaggcaa aacaaattaa tcctgtaatt gtattggatg aaattgataa attaaatcgc
     2041 agttttagag gcgatccaag tgcggtgctt ttagaaattt tagatccaga gcaaaattct
     2101 aaatttaggg attattattt aaattttaat attgatttaa gtaaagtcat ttttatagca
     2161 acggcaaatg atattagcaa tattcctgca cctttaagag atagaatgga atttatagaa
     2221 cttagctctt atactccaag tgaaaaattt catataatga aaaaatattt aattccagat
     2281 gagcttaaaa aacatggctt aaaatccaat gaattattta ttgatgatga aactatagag
     2341 ctaatcatta gcgattatac tcgtgaatca ggagttagaa atttgcgtcg caaagtggca
     2401 gagttgtgtc gtaagagtgc taaaaaacta cttttagaaa atattaaaaa agtcattatt
     2461 aatacaaaaa atttgaatga atttttagat aaaaaagttt ttgaaataga aaaaaataat
     2521 ggagaaaatc aagtaggtca ggtcaatggt ttggcttgga caagcgtagg tggagatgtt
     2581 ttaaaagtag aggctgtaaa aattaaaggt aaaggagaat taacgctcac aggaagtttg
     2641 ggtgatgtaa tgaaagaatc agctagaatt gcttttagca tgataaaagt tttaatcgat
     2701 gaaggaaaaa taaaaatacc taaaaaaata attattgatc ctaaagttaa tgtttatgat
     2761 agttataata ttcatataca tgtgccagat ggagctactc caaaagatgg cccaagtgca
     2821 ggtattacga taagcacagc tattgcttct atttttagtg ataaaaaggt taaagcagat
     2881 gttgcaatga cgggtgaaat agatttaaaa ggaaaagttt taccaatagg cggattaaaa
     2941 gaaaaattaa ttgcagctta taaagcagat ataaaaacag ctttaattcc aagaaaaaat
     3001 tacgaaagag atttaaaaga tattcctagt gaggttagag acaatatgga aatcattgct
     3061 gttgatactt tcagtgatgt tttagaatat actttggttt aactttattt tgagaataaa
     3121 tgtataagaa agcaaacttt ttacaagttt gctttaaaag attatagtcc ttcaaaagga
     3181 ttattgatta cttcttttct atccactata taagggataa gagctacatg tcttgcacgt
     3241 ttgattgcaa cttctaccat ttcttggtat tttttgcttg tgcctgttaa acggcgtggc
     3301 atgattttaa atctttcaga taaagcatgt tttaacattg ctgtatcttt ataatcaata
     3361 aattcaactt ttgcttcagt gtatttgcaa tatttgcgag agtattttct tttttctgcc
     3421 atagtttatc ctttaaaatg gtaaattagt atcatcgcta tcataagcat cgatatcaat
     3481 ttcttttaat ttttcttcgt gttgtgggtt ttggtttctt tgtggagtag ggtttgcttt
     3541 tgctttatta aaattttgat tttcactcat ataaggatca tagctttgat tttcatagtt
     3601 tccactataa ttgttgtttg aaaagctatt attgccaaaa ccaccttgtt gtggagcatt
     3661 ggaattgcca agcatttcca tattttcaac ttgaatgcta tgtttagagc gattttgtcc
     3721 attttgatca ctccattgtt caaatctcaa acgtccttct atgagtactt ttgaaccttt
     3781 tgtaaggtat tggtttgcaa cttctgcggt gcgaccataa aagcttatat caataaagca
     3841 agtttcttct cttttttctc catttgcggt aaatcttctt gttactgcta tagcggaagc
     3901 tccaatagca ctaccgcttt gtgcataacg catttctata tcacgtgtaa gatttccaac
     3961 caaaacaact ttgttaaaca tctttttcct tattgaattt caggagcatc taaaggttta
     4021 atttcttttt tagattgctt aatcccgtgg cttagttttt cccaagctgc aatttctttt
     4081 ttattttcat attttacgat taaaaatctt attacttctt cagtgattct taacaccctt
     4141 tcaagctcag cgatcaagtt tgtaggagct ttgaaataaa tcacaaaata agttcctctt
     4201 tcgtattttt tgattttata cgctaatttt ctagtaccca ttggaacaac agtttcaatt
     4261 tctgcactat ttttggttag gacttcttta acgaattcca acttcgcatt cacttcctct
     4321 tcagtaagtg ttggttttaa gataaataaa acctcataat gtttcatctt ttctccttat
     4381 ggatattaaa gcccattttt atgagcaagg attttgcata aagcaagacc agattatatc
     4441 aaaatatact taattagtct tgaatactta aggttttatc taaatttgtt ttgatttctt
     4501 caagcatagc aaaacgtttt ttatacatgg agcgtttttg cgaagggatt tcttctaggt
     4561 ttttttgcga gtggtggagc ttgtagtatt tgtgtttatc gattttctag ccaaattttt
     4621 tgataatcta caaaatagcc tttttctttt cctttttgag aacggatttg atttttttca
     4681 tgtacaccta aagtagcttg aagttttaaa atttcacaaa gcatcttaga gcattctata
     4741 agtaaagcaa cagggcgcaa accatgacat tttttagtta aaattttatt aatttctaaa
     4801 atattaaaat ctttgtattt atatccttgt atgcaagaaa gtagaagatt attttctaaa
     4861 gtaaagcaaa aattacattg tgaaatagtg tattttttaa attttaaaga aaaagcccaa
     4921 aaaccttctt cgtaaacatt atggttatat cctaaaaaaa gctcaaaatc ttcatcaaaa
     4981 gaaaaaatca tttgttcttc gggaagaaat ttaaaacaag taagtccctt atcaacatca
     5041 taaataagtg ttttaacgcg ttcatttgct ttaaaacttt tatcgcaaaa tcttcttata
     5101 gcattgtagc aagcataggg tctttgagag aaaaagtctt ttaaatgttt atttttttct
     5161 tcattaagcg ttttttctag aagccttact tgaggaaaat atagaatttt tcttgcttga
     5221 aaacgcaaat agcgccaaaa gatgatactt tttcttctat cagtaaaatt tggaataggg
     5281 taggaaaatt ttttattcac ctgcaatcct tgatatatca ttataagttg caaagagcat
     5341 taagcttaaa agtattgcca tgcctgcgta acttaagtat tcaaaagcac gctgtggaat
     5401 cttgcgtcta aaaatcattt cataaagatt aaaaagtata tgtcctccat caagcatagg
     5461 aataggtaaa agatttaaaa tacctaaatt tatagaaatt aaagcagtga taaataaaag
     5521 caaagtaaag ctattttgtg cagcctttga ggtaatttca gtcatggtga taataccgcc
     5581 taaatttttt gcttcaactt caccacttat gagttttaca atacccttga tgataagtgt
     5641 ggaagcttga aaactttctt gtgcggcata tttaaaactt tctaaacctt ggtgttttac
     5701 aagagtgctt gtcccatttg gactgactcc aagttgaggt ttttcaacga tttgtccaaa
     5761 gtcattatat ccttgtccta tttttggagt taaaataaat tctaaatttt ttccttctct
     5821 atcgattaat attttcaaag gctctaaact taaatgcttt gaaatttcat caaagctttg
     5881 aattcttata ccgttaattt ctaagatagt atcatttttt tgaagtccta tgtcttgtgc
     5941 agcagagttt ggcgctatgc ttcctatttg cggagcaagt ttgcttagac ctaaatttcc
     6001 tatgataata taaagaaaaa aagctaaaat caggttaaaa aatggtccag caaaaagaat
     6061 ataaatcttt tttaaaggac ttaaaatgct atagctatct ttgtctagat tttcaaaacc
     6121 aggacgcata tcatcttgtc ctttaagttt aacatatcct ccaagtggta aagtgcttaa
     6181 gcgatagttt gtgcctttaa attcacgctc tataagactt tttccaaatc ctatactaaa
     6241 gacttcaact tttacaccca aagatcttgc agccaaaaaa tgtcctaatt cgtgaaagaa
     6301 aattaaaaat gagatgacta aaacagttgc taaaaattca atagaataaa atttaattcc
     6361 caaaatcaaa ataacaatta aaaacaataa agatctcatt tttctccttt tttttgagct
     6421 tttatataag tatagatgta ttcaaatcca gaataaagag ttaaaatcaa agctatgtaa
     6481 agtagaattt caccgcctat ccactccatg attaaaaatc ctatcgcagt catttgaaaa
     6541 gcggttttaa gtttgcctgc aaaagaagca ttgacattta aattttcgct aatcattaca
     6601 actctaaaac ctgtgataaa aaattccctt actaatataa tataaattac ccattcatta
     6661 gcttttcctg taagtaaaag ccctaaaaaa gctgctaaaa caagcatttt atcggctaat
     6721 ggatctaaga ttccgcccag ttttgtggtt tgtttccaag ttcttgcgat gtatccatca
     6781 aaaaaatcac ttaaagccgc taatgaaaaa gttaaagcag caaaatagtt aatccaactt
     6841 tgatgaatat tttcaaaatg atgaattaat aaaaaaaata gcaaaggcgc taaaaccatt
     6901 ctaaaaatcg ccaagatatt gggtaaattc ataacaagcc ttgtgaaatt aaatgtaaaa
     6961 ttataatcaa aattgtataa aatttaagca aagacttagt aaaaatacaa aaaaagaatc
     7021 agtttatttt tatttaaatt ttgcttttaa gcaaaattta aataaatttt acaacttcat
     7081 caaaactaaa acgatttttt tgaggatttt tttcatcgtt gcaatatcct aaagccacca
     7141 ccaaacttga tctttctttt tgaatatcaa gtgataaata agaattaagc ttttgtttat
     7201 caaaaccacc tatagtgcag cttgctatat ttaaagcatt agcactgtaa agtatgctag
     7261 ctagagctat atgagcttgt tctcttgcat aagatatttt ttcttcttga tttagagatt
     7321 ttaaaaaagg catataagca tctaagcgtt tttgaatttc tgtttcactc atatctcttt
     7381 ttctaagttt ttcttcaaaa taatccaaaa aatcaagtct tgaaatgatg ataattaatg
     7441 cagcgcaatc ttttacatgt ttttgctggt tgcaaatttt agaaagttct tcttttcttt
     7501 tctcatcttg cactactata aatttccaag gttccagtcc taaggagctt gggcttaatc
     7561 ttgctatttc taaaatagaa tttaaatcct cttttttgag tttttcattt ttaaaatttc
     7621 tacaagaata tcttgtgcta aaaatttcaa gttctttttt cattattttt ccttgtaaaa
     7681 ttcgacgact tcattaaaat ttaagcgttg agtagaatat tttggttcgt gggctttata
     7741 tcctaaggat aaaattacag cagtttcaaa aggataagtt aaattaagaa aatcatcaac
     7801 tttagctttt tcaaagccac ctatcataca agaatcaata cctaagctca ttgcagctag
     7861 tgacatttgc atcatagcaa gatagcattg aagttgtgcg taatgataga gttcattatc
     7921 attcattgca ttggttttat gggtgtaaat ttctaaaatt ttttgaaaat tttcttcgct
     7981 agaatctgag aaacgacgca cttgtttttg tgcaaattca tctttgcttt gaagatcttt
     8041 tcttgctaga aaaatgatat tatgactcgc acttgctaca ttttgttgat tgtaacatag
     8101 agttgagagt ttaagattgt gttctttttg ttccaatact acaaatttcc aaggctcaaa
     8161 tccatgtgag cttggggcta agactccact ttctaagata aaatgcaaat ccttttcatt
     8221 gattttttta tcattaaaaa gtttacaagc tctgcgtttt gaaattagtt ctttaaaatt
     8281 cattttattc cttaaaatca aaaaataata atattaatta taaaatgcaa agcttaatca
     8341 aaaaatatta tagtttgata tttttcttaa aaacaaaacc ggattttgca aaacccattt
     8401 tttggatata aaattcatga gcttgtgttc taaaaaaact tgaacttagt tctaattctt
     8461 catatccttg atcttttgcc caaatttgga tttttttcaa aaaagcttga cctatacctt
     8521 ttcctcttaa agcttcatct acgacaaaat cacaaatata aagacaatga ttatgataaa
     8581 gtaaagggca tgactccaca agctgctttg tagcttccct cattttcata ggtaaaaagt
     8641 ttataatgtt gagtttgtgt agcaagttgg attttgtcta aaaaatcttt caaagatagg
     8701 ttatttctta attgttttat caagggataa attttttcca agtcttcttt tagcttaatt
     8761 tctttcattt ttaaatccct taaatttcaa aaatttcagg ttttaatttt aaaagtaggc
     8821 aaaaagttgc caaaacagct tgttcttgca taaattcacg atctccatct aaataaagcg
     8881 tttcttggat aaaagttcca tctctaaaca ttgcacctat ataaatagtg cctgatttta
     8941 tttttccctc atctttttcg ccaactactc cgctaatagc taaggcaaaa tcaggattag
     9001 ctgttttaaa aatacctttt agcataaaat aaacacaacg ttcactgtat tcgccattat
     9061 tttctaagac gctttcgcta attccaagcc attcgtgttt gatgcggttg gaataactta
     9121 caatagatcc ttcaaaaatt tcacttacac ctgaaatttt ggttaaggtg cttgcacaaa
     9181 gtccacctgt gcaactttca gcaaaagaaa tttttaattt tttttctaaa agtttagagc
     9241 ttataaaatg tatgggatct ttacctaaaa ataccttttg tccaaaaaga ttttttacgc
     9301 tatttaaaaa accatcaagt tttccaaaat tagcgcaagt ggccttaata agcacaagat
     9361 tatctaaaag cttggttgat tttatactta tctcataaga ttttgttagg gtttgcagta
     9421 gcaatatagc gctttcatca tccatgccaa aaatgcaaaa atatgcaaaa tttaatttta
     9481 tatgcccaag aagattgggt aatttttcgc ttggatttat tttaacgaca ttaatttttg
     9541 aatttgaaaa attacacaca aagctatttt tactaaattc tgctttatct ggaaccaagg
     9601 tatcatcttt taagataaga ttatcatcat ttaaagttgc taaaatttta gcaacagtcg
     9661 cataatgtaa agagcttgta aataaagtga taaaatcata ctgatttaag agattttcaa
     9721 gtaaaaaagg taaatcttta tcggttttat tttgtatgcg aatttcgttg atttctttaa
     9781 atttttcttc ataagttcta taaatataat ttttgaattt ttcgtttata gtaagctcat
     9841 ctcctataag ataaagcaaa tgtttcataa attttccttt ttttcttata attatagcca
     9901 aaaacaaagt agaaattaaa gctaatttga gtagaattta agattattaa aaattaggtg
     9961 gaaaaaatgg actacaaaga aactctactt ttgcccagta ctagttttgc tatgcgggcg
    10021 aatttagcgg aacttgaacc gcaaagattt aaaaaatggt ttgagcaaaa ttatgcttat
    10081 gaaaaaatga aagaaaatcg caaaaatgcg aaaaaaagtt ttaccttaca cgatggcccc
    10141 ccttatgcta acggacatat ccatatagga catgctttaa ataaaatttt aaaagaaact
    10201 attatcaaaa cgcattattt taaaggtgag agtgtgcgtt ttactccagg gtgggattgt
    10261 catggtttgc ctatagaaca acaagtagaa gtaaagcttg gagaaaagaa aaaaagctta
    10321 agtaaaaaag aaattcgtga gttttgcaga caacatgcga gtgaatttgt agatatccaa
    10381 agagaagaat ttaaaaattt aggcattatt gcagattggg ataagcctta tttaactatg
    10441 aaatttgagt ttgaagcagc gatttataga actttatacg agattgctaa aaaaggctta
    10501 ctttgcgagc gttctaagcc tgttttttgg agttgggcgg caaagtcagc tttagcggaa
    10561 gctgaagtag agtatcaaga taaagaagat tattctatct ttgtggcttt tgatttagat
    10621 gtaaaagctt gcgaaaaatt aggcgtttca aaagcaagcg cagtgatatg gacaactacg
    10681 ccttggactt tggtggctaa tcaagctata gctttaaatc ctaatgaaaa ttatgtgatc
    10741 accaaagagg gtttgatttt tgcaagtgct ttacttaaaa gtatggtaga aaaaggactt
    10801 acaagtggag aaattcaaaa agaactaaac gcaaaagaat ttgaaaaact tgaagctatc
    10861 aatcctttaa atggaagaaa atctgtttta attatgggcg agcatgtatt gatggatggt
    10921 ggaagtggac ttgtacatac tgcaccagga catggcgaag atgattatta tgcttgtttg
    10981 aaatatggca ttgaggtttt aatgcctgtt gatgatagtg gatgttatga tgaaacttta
    11041 agagctaaag ggcttttgcc ttctcatttg cttgaagagt ttataggtct tcatattttt
    11101 aaggccaatg aaaaaatttt agaactttta ggcgaaaaac tgttacattc ttctaaattt
    11161 atacactctt atccattttg ttggagaacg cataagcctg tgatttatag agctactaaa
    11221 caatggttta ttttaatgga tgaaccaaaa cttcaaggaa aaactttaag agagtgtgca
    11281 aaagaacaac ttttaaaaac aaccttttat ccgcaaagtg gggtaaaaag aataggttct
    11341 atggtggaaa atcgcccaga ttggtgtatt tcaagacaaa gagactgggg aacgcctata
    11401 gcctttttta gagataaaaa cactaaagaa gtgatttttg atgatgagtt ttttgacttt
    11461 gtagcagcta tctttgaaaa acatggcgct gatgcgtggt gggagtttga aatcaaagat
    11521 ttaattccta caaattcaaa atacaacgct gaaaatttag aaaaagtata tgatatttta
    11581 gatgtttggt ttgatagtgg aagtactttt aatgcggttt taaatagcgg actttatgac
    11641 acaggagaaa aaagagcaag tatgtattta gaaggaagcg atcaacatcg gggttggttt
    11701 caaagctctt tgcttgtagg tacagcgatc aatgaaagtg caccttatga aagcatttta
    11761 actcatggtt ttaccaccga tgaaaaaggg caaaaaatgt ctaaatctaa aggcaatgtg
    11821 attgctcctg aatatgtagc aaaaacctat ggagttgaaa ttttaagact ttggatactt
    11881 ttaagtgatt attcaagtga tttaaaaatt tcagacaata tcttaaaaca agtaggcgaa
    11941 caataccgca aaataagaaa cactataaga tttttacttg ccaataccaa tgatttaaaa
    12001 gatttaaaag ttaaagaatt tagttttatt gataaatgga tattaagccg tgcaactaaa
    12061 gtttttaaag caagcaaaga ggcatttttt gcttatgaat ttgctaaagg ttttagtttg
    12121 cttttaaatt tcttaagtgc ggatttaagt gggatttatc ttgatatcag taaagataga
    12181 ctttattgtg atagcgaaaa tgcccaaaga agaaaatctg ctcaagtggc tatggctttg
    12241 atagcaaaag agcttttaaa tttacttgct ccaaatttaa gctatagtgt agatgaggct
    12301 ttagaacatg ctaatgtttt aatcaaaggt gatgcaaaag atgtatttga tctaagttta
    12361 actcaggatt ttgattatga ttttggtata gatgatacat ttttaatgag tgctagagag
    12421 aaattttttg aacagattga tatacttaaa aaagataaaa tcattaaatc tactttggaa
    12481 ttaaatttaa acatcagttt taataaattc ccaaatgagg aattagccga ttggtttatg
    12541 gtaagtcaaa tcagcaatga aaatgaagaa attttggctg aatttgaagt agagaatgag
    12601 aaatttaaaa tcaccaaagc ttcactttgt aaatgcccaa gatgttggaa acttcaaagt
    12661 aaagatgaag aaacaccttg tttaagatgt gaagaagttt taaaagggat tcaatgctag
    12721 aaaatcctat tccaaatagc attatcatca caactatagc ggtggttttg gcttttagtg
    12781 ctttagcagt atttttgatc aaaaaaacaa aggaaaataa atgataactt taaaagaagc
    12841 tttaaaatac tccaaagaag aacttgaaaa tttaaaaaaa gaactcaatg aaaaagcaaa
    12901 aaaagaaaaa aaaataggtg cttatatcga acaattttta gataaagact taagtgtttc
    12961 aggtgaaggt gtgcctgtag ctataaaaga taatatcagc gtaaagggct gggagcttac
    13021 tagtgcgagt aagattttac aaggttatat cgctccttat gatgcaagtg tgattgttaa
    13081 tttaaaagct aatggttttt ctccttttgg gcgttgcaat atggatgaat ttgctatggg
    13141 aagttcaaca gcgagttctt attatggcaa aactttaaat cctttaaatt ttgagcgtgt
    13201 gccaggtggt tcaagtggtg gaagtgctgc tgcggtagcg ggtggcttgg ctttggcaag
    13261 tttgggttct gatacaggag gatctgtacg tcagcctgca gctttttgtg gttgcgtagg
    13321 atttaaaccg agttatggaa gagtgagtcg ctatggctta gcttcttatt cttcaagttt
    13381 ggatcaaatt ggggttttaa cgcaaaatgt agaagatgcg gcaattttat atgatgcgat
    13441 cgcaggatat gataaaatgg atagcacgag tgcaaatatc gagtttatca aaaccgctcc
    13501 aaatttaaat gcaaataaaa aattaaaaat tgcagtgatt gaaaattatg tcaatgatgc
    13561 agatagtgaa gtaaaaaacg cacttttaaa aaccatagat atgttaaaag ctaatggaca
    13621 tgagattgta tataaaaatt tgcttgattc taagtttgat atcgcagcgt attatatcat
    13681 cgcaacagct gaagcaagtg caaatttaag tcgttatgat ggggtgcgtt atggcaagcg
    13741 ttctgaaaat atccaaaatt taaaagaaat gtatgtaaat acacgcagcg aaggttttgg
    13801 agaagaagta aaaagaagaa ttttgttagg aacttttgtt ttaagcagtg gatattatga
    13861 tgcgtattat attaaagcac aaaaagctag agcttttatt aaggtaaaat atgaagaaat
    13921 tttgcaagat tgtgatctta tttttatgcc tgtaacgcct acaacggctt ttaaatttga
    13981 tactcaaaaa agccctatgc aaacttattt agaagatgtt tatactatct ctgtaaattt
    14041 agcaggactt ggaggtatta gtgtgcctgt tgcaaaagat aaagaagggc ttaatatatc
    14101 agcacaactg atttgcaaag cttatgatga acaaaccttg ttagatgggg ctttaagttt
    14161 agaacaaatg attaaacatt aaggatgaaa gatgaaaatt gtaaaaagag ctttaacttt
    14221 tgaagatgta ttattgcgtc ctgggtattc tgaagtttta cctaaggaag taaaaattca
    14281 cactaaatta acaaaaaata tcactttaaa tatgccttta atctctgcgg ctatggatac
    14341 agttactgaa cacagggctg ctattatgat ggcaagactt ggagggcttg gagtgattca
    14401 taaaaacatg gatatagcct cacaggttag agaagtaaaa agagtgaaaa aaagcgaaag
    14461 cggggtgatt atcgatccta tttttgtaag tcctaaggca agtgttgcgg aagctttaga
    14521 aattatggca gagtatagaa tttcaggtgt tcctgtagta gatgaagata agaaactaat
    14581 aggcatactc accaatcgtg atttaagatt tgagagtgat ttttcaaatt tggttgaaaa
    14641 tgttatgact aaaatgcctt taattactgc tccaaagggt tgtactttag atgatgcgga
    14701 aaaaattttc agcaccaaca aagtagaaaa acttcctata gttgatgaac aaggacgctt
    14761 ggaaggactt atcactataa aagatcttaa aaaacgcaaa gaatatcctg atgccaataa
    14821 agataatttt ggaagattac gcgtgggtgc ggctatagga gtagggcaaa tggatcgtgt
    14881 gaatgcttta gttgaagcag gcgttgatgt tgttgtgctt gattctgcgc atgggcattc
    14941 taagggtatt attgatacag taaaagcaat taaggctaaa tatccaaatt tagatcttat
    15001 cgcaggaaat atcgccactg cagctgcagc aaaagcactt tgtgaagcag gagtagatgc
    15061 ggttaaagta ggtattgggc caggaagtat ttgtactaca cgtattgttt caggtgtggg
    15121 cgtgcctcaa atttcagcca ttgatgagtg cgtggaagaa gcaaataaat ttggcgttcc
    15181 tgtgatagct gatggcggga ttaaatattc aggtgatatc gcaaaagctt tagctgtagg
    15241 tgcgagttct gttatgatag gatcgctttt agctggaacg gatgagagtc caggagagct
    15301 ttttacttat caaggaagac aatataagtc ttatcgtggt atgggctcac ttggggctat
    15361 gcaaaaggga agttcggata gatattttca gcaaggtact gctcaagata aactcgttcc
    15421 tgaaggtata gaagggcgtg ttccttatgt gggaagtata agaagcgtgg tgcatcaact
    15481 tttaggaggt ttgcgttctt ctatgggtta tgttggggct aaagatatag aagattttca
    15541 aaaaagagcc gaatttgttg aaattaccac tgcagggctt aaagaaagtc acgtgcatga
    15601 tgttactatc actcatgaag caccaaacta caaggttaat catcaatgag ttttgaagaa
    15661 aatttaaaac acgctaatga atctttggaa aaattaaata atcaagagct tgccttagat
    15721 gaaagtgtaa aaatttataa agaaggttta gagagtatca aaaaagcaag acttgagctt
    15781 gaaaaagcaa aattagaagt ggagcaaatc gatgagtaaa atagcagctt tacagtttcc
    15841 aactttagct ttaagtgaat caaggcttga ttattatctt aaagcttcaa aagacaatgg
    15901 agtaaattta gtagttttgg gagaatatgt gatcaacagt ttttttacag aacttttgca
    15961 tatgccaaaa aatatgataa aagaacaaag cgaagctaaa aaagaaagct tgattaaact
    16021 tgctaaaaaa tacgaattag aaattatcgc tccttatgta agcgttgaag ctaaaagtta
    16081 taaaaaactt tgcttaaaag ttactccaaa tggtgtgaaa agttatgaac agcaaatttt
    16141 aatgccttat gaacattgga atgaagaaaa atttttcagc aacaaaactc catcagaatt
    16201 aaaaattttt acttttaatt atgaaaaatt aaaatgtgct ttgctttttg gttttgagac
    16261 acattttgat attttttggc aacagattat ggcgaaaaaa attgatttgg ttatcgttcc
    16321 tagtgcttgt acctttgaaa gcaaacaaag atgggaagaa cttttaaaaa caagagcttt
    16381 tttaaattct acaagcattt taagagtaaa tcgcataggc aaaacaaaag atgagtggaa
    16441 tttttacggc gatactttgt ttattaatgc ttttggtgag atagaaagta aattgggttc
    16501 tgaagaagaa atgcttatta tagagcctaa aaaaagtgat gaagcaagaa aactttgggg
    16561 ttttgataag ataataaaag aatttaaaaa ttaaatttat acttatagat ttataagttt
    16621 ataaaagtta tctagagctg atagaagcta aggtttatat tttcttttta gtaaaaaagt
    16681 gctaaaattt agcctttaaa gtataaaggt ttaaatgatg caaaatatcc attttatcgg
    16741 cataggcggt ataggaattt ccgctttagc aagattttta aaagaaaaag gttttaaaat
    16801 tagcggaagt gatcttaaag agagtaaaat cactaaagaa ctagaaaaag aaggggttaa
    16861 ggtcagtatc cctcatcata aagacaatat tttaaacaaa gatttagtta tttattctgc
    16921 tgctatcaaa gaagaaaatc ctgaatttaa acacgctaaa gaattaggca ttaaatgcct
    16981 ttcacgcaag gaggccttac ctcttatctt agaagataag cgcgtttttg cagttgcagg
    17041 agcacatgga aaaagcacaa cttcaagtat tttggcttct ttgcttggtg atgcttctgt
    17101 gatcatcgga gcgattttaa aagaatttgg ttcaaatatg atttataaag aaagccaaaa
    17161 ccttgttttt gaagctgatg agagcgatag ttctttttta aattcaaatc cttatttggc
    17221 tatagttact aatgcagaag cagagcattt agatcattat ggcaatgaag tttcaaaact
    17281 ccatcatgct tatgcggagt ttttagatac ggctaaaatt cgcgtgatta atgctgaaga
    17341 tgagtttttg aaaaattata aaaatgagtc aaccaagctt tatccgagca aagatatcaa
    17401 aaactgcacc atgcgtatag aaaatttcaa accttttaca agctttgagt tgaaaaattt
    17461 aggtgaattt aaggtttttg gcatgggata tcatttagcc cttgatgcgt ctttggcgat
    17521 tttggcggct ttaaatttct tagatataga aacgataaga actaggctta aaaattatca
    17581 aggtattaaa aagcgttttg atattttaca tgctgatgaa aatttggttt taatcgatga
    17641 ttatggtcat catcccaccg aaataaaagc gactttaagt gcagcacaac aatacgcaaa
    17701 attaggcgga tataagaaaa tcacagctat ctttgaaccc caccgctaca cgcgtttggc
    17761 tgcaaattta aaggaatttg caaaggcttt tgaaggtgta gacgagctta taattttacc
    17821 tgtttatact gcaggagaag agcctatagg gcttgattta gaagcggttt ttcctaaggc
    17881 tttatttgta gaagatatca aaagagaggg taaatttttg gtagcttcta aggggcaagt
    17941 ttttgaagaa gggcttatta taggttttgg tgcaggagat atcagtaata aattaaggca
    18001 aaaaaatgag taggtttttt ttatattttt taattatttt aattttagcc ttaatcactt
    18061 ttgctttgcg tgaaaaatta ggcaaaaaaa ctaaaccttt ttttggtatt ttacttgtga
    18121 tttttattgt tttagcggta ttttttgaat ttgaaaacac gcaaaaaagt catttaagaa
    18181 cagatattat cgtagctttt aatcaaaata aaaatatttt atgtaaagat atcaatgttt
    18241 ctaaggcgta ttttaattat gaatttggta caggaagttt tatttcaaag gataataatc
    18301 aaagttttaa ttctttaatc atagatatta aagattgtag gttaaatgat gaatgataca
    18361 aaagaagaat tgatctcaaa gcttgattta aacagctatt tagaagagtt taaagccctt
    18421 tttgcaagag ataaggagat ttttttgcaa ggagattcta atcttcattt taaacgtata
    18481 catgagcttt gcgaggtgga atttcctact ataccagagc ttagcaatct tgataaagcc
    18541 ttggttcatt taagtaagca aggaattttg catttagatg aaatttttga atttgtaaaa
    18601 atttttcgtt attttgaaaa gttaaaaaaa ataaaactag gaacaaattt agactcttgg
    18661 ctacaaaaga tagaatttgt tagcggggct ttggagcttt gtttgaattt cgatgaaaaa
    18721 ggggagttaa aagaaagttt agatgaaaga cttgtaaatc ttaatgccgc tctaagatta
    18781 aaaaatgaaa gcataatagc tgagtttaag aaattttgct atacaaaagc tttaatgcct
    18841 tatcttatcg atacacaaat ccatcttata aacaatcttg aagccttgct tgtaagaggc
    18901 gggtttaatc acgctattaa agcaaaaatc ataggcagaa gtaatggcgg tggcttttat
    18961 atcgtgcctt taagtgttga aaatttgcaa aatgatatag aaaaaatcaa aaatcaaaaa
    19021 gaagaaattt attatgaata cgctaaaaat ttctcagctt ttttagtaaa aaatctacct
    19081 tttttaaaat ttatcaatac agcctttgat ctttttgatc attatagtgc tagggttttg
    19141 cttgctaaaa aaagggattt tgaatttgtt ttgtgtgatc aaagtacgga tttagtgctt
    19201 aaaaattttg ctcatcctgc cttaaaaaat ccaaaaagcg tgagtttgga atttaaaaaa
    19261 caagttttaa tcatcacagg ggtaaatgca ggcggaaaat ccatgctttt aaaatccatg
    19321 ctaagcgcag catttttagc taaacatctt ttgcctatgc atataaaagc aagtgaaagt
    19381 aaaatcggta cttttaaaga atttgatgcc atcatagaag atccgcaaaa tgttaaaaac
    19441 gacatttcaa cttttgcagg aagaatgttg catttttcta gacttttttc taggaaaaat
    19501 ttgcttttag gtatcgatga aatagagctt ggaacagatt ttgaagaagc ggcttgtttg
    19561 tatagtgtgt taatttcaaa actcatagct aataatctta aaatcatcat tactacacac
    19621 cacaaacgcc ttgccatgct tttagcaaag aatgagcaag ttgaactcat cgctgcctta
    19681 tatgatgaag agctttcacg cccaaaatac gagtttttaa aaggcaccat aggaaaatct
    19741 tatgcctttg aaaccgcttt gcgttatcag attccgccga atttagttag cgaggctaaa
    19801 aagctttatg gcgaggataa agaaaattta gaagagcttg tgggtaaaaa tatcaatctt
    19861 gaattagaac taaaagctaa gcttgaaaat gtcgagaaaa aagagcaaaa agtcgatgaa
    19921 attttacttt ccttaaaaga gcaaaaagaa aaaaatgaac aagaatttcg tacgagtttg
    19981 agaaatttag aatttaaatt tcacaaagcc atagaagaag ctaaaaaaac catacagctt
    20041 aaagatataa aagacaagca aagaagtctt aataaagcca atgaacttaa aaaagaaatc
    20101 atcttgccaa gtatggagca aaacgaagaa ttgcgtgtgg gggattttgt aaaatatgaa
    20161 aaaattaagg gtaaaatcat aagcatttct aaaaacgatg ctatggttga aagtgatggg
    20221 atcaaacttc gtgtgccttt aaaactgctt aaaaaaagca ctcctacatc taaaataagt
    20281 ccaaaaacaa gcattagtgt ggcaaaaccg actaatctta gtgttagctt ggatttgcac
    20341 gggcttagga gtgatgaagc tatttcaagg cttgataaat ttatttcaga tgctttgctt
    20401 gcaggctttg atgaagtttt agtttaccat ggtataggag caggaaagct tgcctttgct
    20461 gtaagagagt ttttgaaaac tcataaaagt gtcaagggct ttaatgacgc accgatcaat
    20521 caaggtggct ttggtgctaa ggtggtaaga ttataaggaa ataaatgatt acaaaagata
    20581 atttaaaaca agttttagaa aacttaggct ttaaaaataa aaatgaaaat tatgtaaaaa
    20641 caatcaataa ttacactctt ttaatagatt ataaaaacca aagtattaat tatccaaaag
    20701 aaataaaaat tcacgataaa actacttcta atttttcaca ccctgaaaat tttgtagttt
    20761 ttgaatgtgt gcatagactt ttagaaaaag gttataaggc tgaacattta gagttagagc
    20821 caaaatggaa tcttggcagg gataaaaaag gtggtaaggc tgatatttta gtaaaggata
    20881 atgaaaacaa tccttatttg attatagaat gtaaaaccac agattctaaa aatagtgaat
    20941 ttataaaaga atggaataga atgcaagaag atggcggaca gcttttttct tattttcagc
    21001 aagaaaaagg tgtaaaatat ctttgtcttt atacaagtga ttttagcgat aagttagaat
    21061 ataaaaatta catcatacaa gcttacgata acgaagaata tctaaaagaa aaggaattgc
    21121 aaaattctta taaaaaatct aataacaata tagaactttt taaaacttgg aaagaaagtt
    21181 atgaactgca atattttaaa caaggtattt ttgaagcaaa tgtcaatgcc tataaaattt
    21241 tagaaattac tccaactttt gataatctta aagaacttaa agaagaaggc aaatatcacg
    21301 aatttgcaaa aattttacgc aagcataata tatcaggcaa ggaaaatgcc tttgataaac
    21361 ttgtaaatat ttttctttgc aaaatttatg atgaaacttt taataaaaac aatctcaaat
    21421 ttggatattt tggtgtaatg gcagatactt atgcaaatat gcaagataga ttaatgtggc
    21481 tttataaaga agctatgaaa gaattcttag gagagaaaat tacctttgta tctaatgaag
    21541 atatagaaaa agactttaag caattaaaga taaaaacttt aaaagaagta atgcaaaatt
    21601 acatcaaaga attaaaattt tattcaaata atgattttgc atttttagaa gtgcataata
    21661 aagaattatt cttaaaaaat gcacttgtat taaaagaaat agtagagctt tttgcaaatt
    21721 acaagcttac tcaaaactct acaaatcaat ttttaggcaa tctttttgaa ctttttttgc
    21781 aaaaaggtat gaagcaagac gaaggtcagt tttttacccc tattcaaatt tgtgaattta
    21841 ttatgtattc tttaccgctt cacgaaatgt taagcaaaaa ctctaaagct ttaagggtgg
    21901 ttgattatgc ttgtggtgct ggacattttt taaacaccta tgccaatgag cttaagcgtt
    21961 atctaacaga agatgagctt aaagagcatt ataaaaatat ttatggtatt gaaaaagagt
    22021 atcgcttaag taaggtttct aaggtatcaa gtgcaatgta tgggcaaaat gaaatcaata
    22081 ttttatacgc tgatgcactt gcttcttttg aattagcaaa tacaaataat ttagaaggag
    22141 aaaaagcaaa accacaaata gaatcaaata gttttgattt gcttatagca aatccgcctt
    22201 attctgtaaa aggattttta gaaactttaa gtgataaatc taaaaatact tataaacttt
    22261 tcaacgatga tataaacata gaaacaaata attctatcga atgctttttt tgtgagcgag
    22321 caaatcaaat tttaaatgat aatgctaaag ctgctattat cttaccaagt tctattttaa
    22381 ataaagattc tatttataaa aatacaagag aaatattatt tcaaaatttt gattttattg
    22441 ccattgtaga gctaggtaat caaacatttg gagcaacagg gacaaatacg attattttat
    22501 ttttacgcaa aaaagaaact tttaaacaag aaaatcatct tatttctcaa gattatagtt
    22561 tgattaaaga acgcatagaa gctgaaaatt taaaagacaa tgaaagcttt tatcaaaatt
    22621 atctaagtgc gtattgtgat tttagaaaat ttgataaaga gctttatagc aattttttaa
    22681 atggaaactt agattctaaa ctcacagagc tagaagcctt taaagattat cgcaatgcat
    22741 ttaggcaaac aagtgattat aaaaaactta aagaatctaa aatttataaa gaaagtaaag
    22801 ataagcaaga tttagaagat aaagcctttt tagcttatgc tcaggcaata gaaaaggata
    22861 aattgcttta ttttagtcta agtcttaatc aagaagtttt aatcataaaa tccccaagtg
    22921 atataaaaga acaaaagaaa tttttaggtt atgagtggag taatagaaaa ggtgatgaag
    22981 gtttaaaaga attgcacgag ccttatttga gcccactttt tgaaagaggc aatccacaaa
    23041 atgagaccaa gcttaatact ttaatctaca aatctttttt aaatacgctt gatgttatcc
    23101 cgcaagaatt gcagatttat gctacaaaag caaggcttat tgatatgatg gattttgaaa
    23161 aagtggaatt taataaagct ataagtttaa atccaaaaac tcaaagagaa gaaataaagt
    23221 ctcaataccc attggttaaa ttgaaaattt gtggagattt tttcatggga ggaacaccat
    23281 caagaaaaaa tataaattat tggaatgggg atattaagtg gctaacaatt agcgattact
    23341 ctaatcgtca agttattatg gatactaaag aaaaaattac aagagagggt tttaagaatt
    23401 ctaatgcaaa aatgatacaa aaaggtgctg ttgttgtttc aatttatgca actattggta
    23461 gagttggaat attaggcgaa gatatgacaa caaatcaagc tatagtagct attattccaa
    23521 atgaagaatt tataaataaa tatcttatgt atgctattga ttattttaaa tttcaattat
    23581 ataacgaagt tattacaact tcgcaacaaa atataaattt aggaatcttg caaaatatgg
    23641 ttattccaaa accaccgctt gaaattcaaa aacaaatcgt agcagagtgt gaaaagatag
    23701 aagagcagta taatacttta agtttgagta taaaagagta tcaaaaccta atcaaagcaa
    23761 tgcttcaaaa atgtggtatt atagaggaca atcaagaata tgaactaaat tc
//
LOCUS       DAPIWV010000013        23430 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.014, whole genome shotgun sequence.
ACCESSION   DAPIWV010000013 DAPIWV010000000
VERSION     DAPIWV010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23430
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.014"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            55..2139
                     /locus_tag="RJ272_000348"
     CDS             55..2139
                     /locus_tag="RJ272_000348"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HDV7381477.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            complement(2282..3232)
                     /locus_tag="RJ272_000349"
                     /pseudo
     CDS             complement(2282..3232)
                     /locus_tag="RJ272_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799189.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(4084..4541)
                     /locus_tag="RJ272_000350"
                     /pseudo
     CDS             complement(4084..4541)
                     /locus_tag="RJ272_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898691.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
     gene            complement(4748..5106)
                     /gene="ssrA"
                     /locus_tag="RJ272_000351"
     tmRNA           complement(4748..5106)
                     /gene="ssrA"
                     /locus_tag="RJ272_000351"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(5107..5517)
                     /locus_tag="RJ272_000352"
     CDS             complement(5107..5517)
                     /locus_tag="RJ272_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HDV7381478.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            5608..6615
                     /gene="ruvB"
                     /locus_tag="RJ272_000353"
     CDS             5608..6615
                     /gene="ruvB"
                     /locus_tag="RJ272_000353"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDV7381479.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKSYSALKLNYEKTLFE
                     E"
     gene            6619..7662
                     /locus_tag="RJ272_000354"
     CDS             6619..7662
                     /locus_tag="RJ272_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDV7381480.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(7692..9083)
                     /gene="fumC"
                     /locus_tag="RJ272_000355"
     CDS             complement(7692..9083)
                     /gene="fumC"
                     /locus_tag="RJ272_000355"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDV7381481.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRVKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGSKA"
     gene            complement(9139..12264)
                     /locus_tag="RJ272_000356"
     CDS             complement(9139..12264)
                     /locus_tag="RJ272_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDV7381482.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPIAFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            complement(12267..14063)
                     /gene="glmS"
                     /locus_tag="RJ272_000357"
     CDS             complement(12267..14063)
                     /gene="glmS"
                     /locus_tag="RJ272_000357"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDV7381483.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFELYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGNEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            complement(14068..16416)
                     /locus_tag="RJ272_000358"
     CDS             complement(14068..16416)
                     /locus_tag="RJ272_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDV7381484.1"
                     /translation="MIFEIQLIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFES
                     ILKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     HVIFDLNLVFALRRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFNNETN
                     LSLQIVAPLHFNIAIILSSLTNLNLIFMNFFELFDNKIYLRFEYDNIISDEQKLKLCE
                     LLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNEL
                     ELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            16489..18297
                     /locus_tag="RJ272_000359"
     CDS             16489..18297
                     /locus_tag="RJ272_000359"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDV7381485.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            18294..18812
                     /locus_tag="RJ272_000360"
     CDS             18294..18812
                     /locus_tag="RJ272_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDV7381486.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            18851..19942
                     /locus_tag="RJ272_000361"
     CDS             18851..19942
                     /locus_tag="RJ272_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDV7381487.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANILAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            19984..23430
                     /locus_tag="RJ272_000362"
                     /pseudo
     CDS             19984..23430
                     /locus_tag="RJ272_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter serine protease VvfC"
BASE COUNT         8194 a         3638 c         3580 g         8018 t
ORIGIN      
        1 ttattcaata atttcaaaat aaatgataaa atacaactaa aaaaggaaaa attaatgcaa
       61 acaagtcctg atatgtttat caatcgcgaa ctttcttggc ttcgctttaa ttctcgtgtt
      121 ttagaccaat gttctaaaaa tttacccttg ttagaaaaat taaaatttat agctatatat
      181 tgcactaatt tagatgaatt ttatatgata cgcgtcgcag gcttaaaaca acttttttca
      241 gctggagtta atgcaagcag tagcgatgaa atgacaccgt tgcaacaatt aaaagccata
      301 cgcaaatact tacaccaaga aaaagagctt ttggagcgtt attttaatga aatcacaagt
      361 gaattagaaa aagaaaatct tttcataaaa cattatgaaa atttagatga aaatttaaaa
      421 caaaaatgtg atgagtattt tttctccaat atttttcctg ttattgttcc aatagctgtt
      481 gatgctactc acccctttcc gcatttaaac aacttatctt tttcactagc ggttaaaatt
      541 tgcgataaag cgcatcctga acttgtaaaa tttggaatga ttagaattcc gagagtttta
      601 cctcgttttt atgaagtaag tgcaaatatt tatgttccta tagaaagtat agtccatcaa
      661 cacgcagaag aaatttttcc aggctataaa ctcttagctt cagcagcatt tagagtgact
      721 agaaatgcag atatggtaat agaagaggaa gaagctgatg attttatgat gattttagaa
      781 caaggcttaa aacttcgcag aaaaggagct tttgtaagat tgcaaattca aaaagatgca
      841 gatgagcaaa tcgtagaatt tcttaatact cacatgaaaa tttttcataa agatgtttat
      901 gaatattcta ttttactcaa tctccctagc ctttggcaaa tcgcaggaaa taaaaccttt
      961 acgcatcttt taagcccact ttacacgcct aaaactttac caccttttga tgaaaattta
     1021 tctatttttg acgctgtaga aaaagaagat atactcatca tacaaccttt tgaaagtttt
     1081 gatccagttt ataaatttat caaagaagca agcaaagatc ctgaagtaat ttccataaga
     1141 atgacacttt atagagtcga aaaaaattcc aatatagttc aagctttaat tgatgctgca
     1201 agtgatggaa aacaagtaac tgtgatggta gaattaaaag cacgctttga tgaagaaaat
     1261 aatcttcatt gggcgaaagc tttagaaaat gccggagctc atgttattta tggcattaca
     1321 ggttttaaag tccacgctaa ggtttctcaa gtcatacgca aacaaggaga taaacttaaa
     1381 ttttatatgc atttaagtac gggaaattat aatgcaagca gtgctaaaat ctatactgat
     1441 gtgagttatt ttacaagcaa agcagaattt gcaagagata cgacaagctt ttttcacatc
     1501 ttatcgggct ttagtaaaaa tcgtcgcctt caaactcttt caatgagccc aaatcaaatc
     1561 aaagaaaaag ttttagaaat gatacgcatt gaaacaagca agaaaaatga aggtgtcatt
     1621 gtagctaaaa tgaattctct tgtggatagt gatatcatac aagcgcttta tgaagcaagt
     1681 atggaaggag tgcaaatcga tcttatcata cgcggaattt gttgcttaaa acctgatgaa
     1741 gaatacagca aaaacatacg cgttagaagc atcataggaa aatacttaga acatgctaga
     1801 gtattttatt ttaaacatag tgagccaaat tattttatat cgagtgcaga ttggatgcca
     1861 agaaatttag aacgccgttt agaacttatg actcctatat atgatgaaag aagcaaagct
     1921 aaattagctc aatttttacg cttgcaactt agtgataatg ttttagctta taagcttaaa
     1981 aataatggag aatatgaaaa aattccttct tctgaaaaaa tcatagattc tcaacaaacc
     2041 ttagaagaat atgtaagtaa aatttataaa acacttaaaa aagatacaga tcaaagtcgt
     2101 gcaacgcact tagcttccaa acttttcaaa gaaaactaaa agtttttagg gttttttact
     2161 ctaaagactt atttacttgt ttgttataaa aaagggcttt aagataaagc cctaggagat
     2221 ttcccataga aataaacaat tatttctaaa ctataaaaag atttagaaat gatttttaag
     2281 attaaatttt atacttaagt cctacttgac cacttaagta agtttcattt ttattatcta
     2341 ctttacctgc tagtatttgt ttagcaccaa agccaagatt catactgagt tgatttgtaa
     2401 aatctacatt accccctacg ataatttgtc cgtatgtttt tttcttgttg ttagcttcta
     2461 cactagtaaa gaaagcatta tttacagcta ggttagctgt gtaatcatca ccactattga
     2521 taacaaattg ttctattttt ggagttacaa aaatataaga gttttcattc atatattttc
     2581 taaattcagc acccacttca atacttacag aattgttttt catagaatca atatctttag
     2641 caatagcacc attttctgta tgagatggag tataactgaa ataataattt actcccgcaa
     2701 aaggtttaat aaataaagta ttatcactaa agtcaaacac acgacctgca ttagcactaa
     2761 gtcctaagaa tttacttgta taatctgagt tatatgcacc atctatttaa acattgtctt
     2821 gtttagttgg agaaacttga gcataagctt taagattaag ttcccattgt ggagctatat
     2881 tgatagtaga atacatacct aattggaagt tatcgctttt ttgttctaaa ttattgtctt
     2941 tgattttagc atttgcataa gtaaaataag caccccataa aacatcatca ttagcttgtt
     3001 tatctacacc tatagtagca ccatgcattg caccactatc cccatcgata atgttagcac
     3061 caccaaaagc attagcccaa acactattgg tatattcatt tacatagctt ggtctcatat
     3121 cactatctaa agcagcaaat ttaagaccat tcattttaga agcataagtt ccaaaaggat
     3181 tgtttagcat tgctacacga gaacctatag aaacatcatt agaaatattc atagtggtat
     3241 ttactgcact agaagctgaa ttgagattag atacagattt acctgtattg tctgtgtctt
     3301 ttttgatatc taaagctagt tttacacctt ctctacttgc taaatctgct cctatacttc
     3361 ctaattgttc tgtgatagaa cgaagtgcta ggatagaagc tttatcatta gtactaagat
     3421 ttaaatttga atttttattt actaaatcaa tgtatttttc atcatcgatt ttaccgccat
     3481 ttttctcagc ttcttctaac attgtttgaa gttcagtttt ttgtttttca agagcttctt
     3541 ttgcttgttt ccattcttca tcttgactag aatcaaattc atttttaagc aatttatcga
     3601 tagtatctat atctacttga agttgaacta gcttattttt agctgctgca gtagcacctc
     3661 cattgattac taagcattta ttgccaccgc agttttgaac gctaagttta taatctacta
     3721 aacctccgct atatttgtca tcagtgatat ccagtacagt tcctgcttcc aaaggatctt
     3781 tgccttgaac actggttgag atataatcac ttgcgaattt taaaagtaat gcacctgcgt
     3841 tattatttgc ttttaaaata tcttcattga aatctttagc ttgaactatt actacattat
     3901 ttgcttctaa gtctgtataa gagcgcttca taagtccaaa atttgaattt ttaagatttg
     3961 cagttccatt taccttaaca aaatttccat aagtagcaaa aagcgtttta tcggcagtaa
     4021 aatttccatt tatagttaag ctaccattag cactttttcc ttcaactgct ccattataaa
     4081 gaattatacc tgaacttttt tttcatcctc ggtaatagct tcacctcctg agctagtcat
     4141 agttaaattt ccattaatca ccgaagatgc aaaagcttgt aaaactatat ctgttgtttt
     4201 aacctcttta gcagtagcgt ttagatttgt tacataagca ggattttctt tattgttatg
     4261 tgtaaagctt aaagtattgt ctttaccgat atcaagttaa atcgataatc agcgctatca
     4321 taatcatcgt ttggtaaatc ccaaacaccc attttgatac ttaaatcttt tcctttgtaa
     4381 tcatcaggat ttttaagatt gatatcctta ccattttctt caaaataatt tcccacatct
     4441 gaagaccctg taagattgat ttcttcagca aaagcactcg aataaagcaa agttgctaca
     4501 cctaagctta gcaatatctt gctcgaagca tttttcttca taagtttctc cttcaataaa
     4561 tttaaactga aggaataatt ataccccccc ccctaaaaat aagcttaaaa ataaaactat
     4621 aaatttttaa tgaaaaatta taaaacctaa tatatcaaag ttttaagggt aataaatcgt
     4681 tcttaacttc atataaaaaa ttctaaaaat ttgaaataaa cttatgattt acttaaaatt
     4741 agcgtgatgg tggaagcgag gggaatcgaa cccctgtcca aaaataatcc cacaaagacc
     4801 tctacatgct tagcaaagat gactacttca ccctacttcg ctcatcttcc aaaactcaaa
     4861 agcaaggcta agaccttatt tcacctcaac gcttgtcaaa cgcaaggcta cactatcaaa
     4921 aatgaccgaa aattaagcta gatagtatga cttaaatttc aggctcaact gaacttacgc
     4981 agctttagcg taagcaggag cgaatttaac gttgtttgcg tttaatttta tttgggcttt
     5041 ttacgctttg cccaaagcga catgccatct aagcagactt actcctgtcg aagccaagtc
     5101 gctcccttat ttagaaataa tatttggaac attaacaatt aaaggattaa aaaccgctaa
     5161 aacagaatca tcattttcat acgaacgaca atatttttca aattgatcac tcatcaaaag
     5221 catccaatcc gtaaattcat cactagcagg cccgttaaag cgatttgctt gcgccatcat
     5281 ctcttcacaa aatacacaaa aatcagtcac ttcttcaaga tttaaacgtc ttgctgccca
     5341 agcggtattg tgtgctaaag tttcaagctc ttttatggct tctttataac gcacgctatc
     5401 gcttccaagc ttgatgatta aaggttcaaa cctatcgcac atggttctaa aaaattgtaa
     5461 aaatttttct atatcgtcaa tttcataatc taattctaat tttgttaaaa ttcccatttt
     5521 taaaccataa tcattaaagt ttaatgtaaa ttctagcaaa ttttagctaa aatcttattt
     5581 taatttttcc aaaatataag caaagatatg gatagaatag tagaaataga aaaatactcc
     5641 tttgatgaaa cttacgaaac ttcgttgcgt ccttcaaatt ttgatggtta tataggtcaa
     5701 gaaagcatta aaaaaaattt aaatgtcttt atagctgcag ctaaaaaacg caacgaatgt
     5761 ttagatcata tactttttag cggtcctgca ggacttggaa aaacaacact agccaatatc
     5821 atctcctatg aaatgggtgc aaatatcaaa acaaccgccg ctcctatgat agaaaaaagc
     5881 ggagatttag ccgctatttt aactaatctt agcgaagggg atatactttt tatcgatgaa
     5941 attcaccgct taagccctgc tatcgaagaa gtactttacc ctgcaatgga ggattaccgc
     6001 cttgatatta tcataggtag tggcccagct gctcaaacca taaaaatcga tttaccaaaa
     6061 tttactctta taggggctac aactcgtgca ggtatgctta gcaatccttt gcgcgatcgt
     6121 tttggtatgc aatttagatt agaattttac aaagatagcg aacttgccct aatcttgcaa
     6181 aaagcagctt taaaacttaa taaaacttgc gaagaaaaag ccgcacttga gatcgctaaa
     6241 agaagtcgtt caacccctag aatagctcta aggcttttaa aaagggtaag agattttgcc
     6301 gatgttaatg atgaagaaat tatcacagaa aaaagagcta atgaggcctt aaattcttta
     6361 ggagttaatg agcttggttt tgatgcgatg gatttaagat atcttgaact tttaaccgct
     6421 gctaagcaaa aacctatcgg acttgcaagc attgctgcgg ctttaagtga agatgaaaat
     6481 accatagaag atgtaatcga gccttattta ttagctaatg gctatataga acgcactgca
     6541 aaagggcgta tagcaagcac gaaaagctat agtgctttaa aattaaacta tgaaaaaact
     6601 ttatttgagg agtaaatttt gcaaaatgga aaattctttc ttataagctt tattttagtc
     6661 attttatttc ttttgcttta cctttttaaa ggttttttac ttgtaattat catagctagt
     6721 ttaatggcgg tagctacctc aaatatcaat gcgaaatttt taaatcttac taaagggcat
     6781 aaatttttag cttccattct tacaacaact tgtatggttt tgcttttctt tgcacctttt
     6841 gtttatgcta tgatagaact tgccaaagct ttaaagaatt ttgatattaa tttagttaca
     6901 caaacacttg attatgtcaa aaactatcaa tttaccttgc ccgaaagctt taatttttta
     6961 gaacctaaaa tcaaagaatt tttagcttct atagatttaa atagcatttc taaacaaatt
     7021 ctaagttatg cttcaagttt tacaaaatca ggagctaaat ttcttataga tatggtttta
     7081 atttgtgtgt tttatttctt tgcaaatcta tatggaacag aacttgttat ctatcttaaa
     7141 tctatcattc ctattgataa aaaagaactc gatgatgttt taagcgaagt gggtaatgtt
     7201 atggctgttg tgctttactc tatggtaatt gtagcaatat ttcaaggtgc actttttggt
     7261 ttaatcacaa tgttttatgg ttatgatgga attttaatgg gagtaatttt tgctgtaagt
     7321 tctctcatac ctgctatagg aggagcttta atttatgtgc ctgtaagtct ttatgaattt
     7381 gcctcaaaca atcttaactc agctcttgtt atttttattt attctgtaat tgtaatttct
     7441 tttatagcag atactttaat caaaccttta atcatcaaat ggatcaacaa aaaacttgta
     7501 aaaactccca ctaaaatcaa cgaactttta attttcttgg ccatgatagc aggaatttca
     7561 acctttggtt tttggggtat tatactaggt cctgcgattt taactttttt tgtatcaact
     7621 ttaagaatgt atgtgatttt aaaagataag aatttaattt aacttgcctt aaaaaaggca
     7681 agttttatgt tctaggcttt tgagcctatc attttagtag gatcaacaaa tttattgaaa
     7741 tcttcttcac taaccaaacc aagctccatt gcgctttctt ttaaagaaat acctttttta
     7801 tgagcatttt tggccacttt agcagcgttt tcataaccta tgtgtggatt tagagcggta
     7861 actagcatta aagaattatg aagattatga tcgattttta cacgatttgg ttctatgcct
     7921 acagcacaat ggatattgaa tgaatgcata gaatcagcca acaaatcaag actttgcaag
     7981 aaattataaa taatcacagg cttaaacaca ttaagttcaa aatttccttg acttgctgca
     8041 aatccgatag ctgcatcatt tcccatcact tgtacagcaa ccatagtaac agcttcacac
     8101 tgggtaggat ttaccttacc tggcataatc gaacttcctg gctcattttc aggaatgata
     8161 agctcaccaa gaccacatct tggacccgaa gctaaccatc ttatatcatt tgcaattttc
     8221 attaaatttg cagccaaacc tttcatagct ccatgagtaa aattaatcgc atcatgactt
     8281 gttaaagcat gaaatttatt tggacttgaa ataaattttg tacctataag ttgagttagc
     8341 tcttcgctta ctttttggct taattctgga tgtgcattaa gccctgttcc cactgcggtt
     8401 cctcctatgg caagttctct taaagttggt aaagaagcga tgatttgctc ttttgaatgt
     8461 aaaagcatag aaagatatcc actaaattct tgcgctagag taagtggagt agcatcttgt
     8521 aaatgcgtgc gtcctatctt gataatacca tcaaattctt ttactttttt ttcaaaagtt
     8581 gcaataagct catcaagcgc agggataagc tttttctcta cttgctcaac cgcaacgata
     8641 ctcatagctg ttggaaaagt atcatttgaa ctttgactca tattaacatg atcatttgga
     8701 tgtacaagct tttctttgcg aaaatccccg cccatgattt cagtggcacg atttgcaata
     8761 acttcattca tattcatatt gctttgtgtg cctgaacctg tttgccaaat cgcaagtgga
     8821 aaattatcat caaatttacc tgcgataatc tcatcgcaag cttgaactat agcatttttc
     8881 ttagcatcat caagtttgcc aagtttgtta ttgaccaaag ctaaagattt tttaagattt
     8941 gcaaaagcat agattaaaac ctttggcatt ttctcacaac cgattttgaa attttcaaaa
     9001 cttctttcag tttgagctcc ccaatatttg tcatttggaa ccttaacttc acccatggta
     9061 tcatgttcaa ctctgtattc cataattttt tcctttgatt aaaattttat ttattataag
     9121 ctaaaaaaat aaatactttc aaaaacgttt tcccactgaa ctcattaaat gcaattcata
     9181 ggcattatga gaaaatctat tcattaacat aaactgccaa aatacattgt ttttatataa
     9241 aaattctgaa ttaaaacctt gacttaaaat attatctttt aatttatatt tttgaataaa
     9301 agcaatagga aaatcaacaa aactagcctt attttctaaa gttcttccat aaattctttt
     9361 ttcaaaaatt acaaaagtag aaaaagaagc ttgataatca tcttgctcta tatttttagc
     9421 aagattaaaa cctaaatttg catttatgct atgatgtttt aaactttcat aatttttagc
     9481 aaaaggactt ttattttctt taaaatcttc ttgataaaaa aaactatgtg taaaatacat
     9541 taaaggatta aaaataaaat cttgacctaa aataatatct ttagttacac caagctgggc
     9601 tgaagtttgc aatgttttat atttgccttc aattggctgc tctactacaa aacgattaag
     9661 agtattaaat cctacaccta tacctaatcc acttaatatt tttataaaat ctaaatcatg
     9721 gttataatta agcaataaat ccatgttata actcttcaaa tcactaccat tattaaaatt
     9781 aaatttagcg ctagaaagag ataaagcata agctaaaaag cctgatgaga aattttctcc
     9841 taaagagata ttagcacctg ttttttgacc tgaaaaatct ttatctttat agtatttata
     9901 acttggagta agatgccaaa aatattcttc attgctaaaa attctaggta aataagtact
     9961 agcaagtaag atattattgt tttgtgcaaa attattaata ttaagaggat gaagggtaaa
    10021 taacatatta ttttgcatta aattagattg attatgatta ctaaaagtgc ttaaataccc
    10081 tgaaccttct attctattta atttagtctt tacatctatt ccattatcta aagaagcaaa
    10141 aaattcctga taagtctgac tcaagtctgc cctagatcgc aattgtctta aagcatttcc
    10201 caagcttgta ttaggaattt cgtaagcatt tggctttaaa ttaggtttta ttaaggtttt
    10261 attaatactc actaaatcat cacttaaaac aaaatcaaaa tttaaagcat aggtattttg
    10321 tatcaaaaca tgattaaaag atgataaact tttttccaaa tctcctaaat taattttcac
    10381 tggcttattt aagatatagt atttaggtaa aggaatatat tctaaattcc cgctcttaat
    10441 atcataagtt tttgcaatca gtttagaatt tttataatta ccaaaatcaa gttgcaattt
    10501 agaatcaact ccttcttgag tataagttcc ttgcacggtt aaatcattca aatcttcatt
    10561 tccaggtcta actatgcctt tattgtttaa attttgccct acaataccat taccgcttaa
    10621 tattgctttt tgttctacat aagcattatt tttaactttt cctttaagct ttaattctcc
    10681 ttgtttgatt aaagttgcac cctcataagt attttgacca ctgataatca aaataccttc
    10741 accttcttta gataacccta tgttaagatt agctaaatgt gtaggtttat taatagcact
    10801 tgataaatga gtactttcat cccattttct ttgactaata tcattagaaa attcagcatc
    10861 ataacctgca gtgtttatag tataataagc tgtattaggt tcttgctcat attttaatac
    10921 atcctgatca ctgagtctgt ttgcatctaa aatactcagt ccttttaacg ccttttgtgc
    10981 atctaaaatt ccttgtccaa ataattcttc tttctcaact ctaactactc cattaataga
    11041 actaatagta gaagtattaa gtttttgtga ctgcgcacta tctctattat cccaaatata
    11101 atcactataa tcaatccatt gtccattaac ttgaacttgt attccattgt aaagctgttt
    11161 taaatcccgt tttatttcat cttctatcct aggtggatct tgcgaaatat acacaataag
    11221 aaatttaggt tgatttgttc catcggttac ttgtttaaca gtaaattttg gagccttata
    11281 atttttattt gctgtactta acagtatatc agcaatttgc ttaccatcca aaaaggggaa
    11341 attttgcttg accagtgccg ctgttccact taccataggt gctgccatag aagttccact
    11401 tttttttgta aacttatcat tagtgcttga atcaacatta ttaatattta ctccagcagc
    11461 aactaaagaa aaattcgtag cccccttaaa accattacta aaatcagcca aaccttgact
    11521 tttaattatt aaagtcccat ctgattctaa agtaatctca tttgcatcca aagctccaac
    11581 agccaaccaa gctcttaaag attcatcata acttggtaaa atcgcatgca aagcagggct
    11641 aagaattcct tcattaccag cagcaaatac atttaatact cccttgtcct tgctaagcct
    11701 catcatatca ttagcaacct tatctgcttt cataacatat tccaaaggag tattacagat
    11761 attatagctt gtcccttgat tagtttgagt acaatctact aatccagaat ttgaagcctt
    11821 aagattaaaa taaggataaa aattaatacc ccagctatta ttaataatac tcacatcttt
    11881 gaaaaaatta taaatatcag gaatttgagt gtaagagcca tttggaaaca ccccagctcc
    11941 ataaaatttt gccccataag ccactccata aggtttgcta tcgcctatct ttgctccaac
    12001 agctatacct gctacatgac ttccgtgtgt tgattttttc aaatcaggta taagctgttt
    12061 cccagctgta tcagtaggat aagtagactt taaaatctta tcctttaaac taatatgatc
    12121 ttgattaaaa gcatcatcgg ctacacctat tataatagta tctccactat accctagctt
    12181 atgtacttta tcaatatgat gaagttcaaa ttcgcttaaa gcaaaaagtt tacaaactaa
    12241 agttaaacaa aaaaattttt tcatttctat tctaccgtta cgcttttagc caaatttctt
    12301 ggcatatcca catcattgcc aagtcttatg gaaatttcca tcgccaaaag ttgagtaatg
    12361 accatcattt caaaaaattc acacatataa tgatcttgct cattggtttt tataaaatca
    12421 tcacttaaat caaattctaa aggtgaaatg ctaagcactg tagaatccct agcaataagc
    12481 tcttcaacat ttgattttgt tttttcataa agcatgtgct ttggcattaa agctatagta
    12541 taaagcttag aatcagccaa agcaataggg ccatgtttca tctctcctgc aggataaccc
    12601 tcagcgtgaa gataagataa ttctttaagt ttcaaagctc cttctaaagc caaaggataa
    12661 aacacatctc tgcctataaa gaaaaagcca tgtccatcta aataacgctt ggataaacga
    12721 tgaatttttt catgtaaagc ctgttttaca ctcacgcaat ttggagtatg caaaagtgct
    12781 ttaatttcag cagaaacatt taaatttctt ttttgtgcca taaaaatagc aagcatccaa
    12841 agtgttaaaa cctgagtagc aaaagcttta gttgaagcaa ctcctttttc tatgcccgca
    12901 cgagttaaaa gacttagatg tgctaaacgc actatattag aattatccac attgcaaatt
    12961 gcaaaagtct tagcaccctg ctcttttgca atctttaaag cctctaaagt gtctgctgtt
    13021 tctccacttt gagaaataac gataaataaa gaatcttttt ttataattgc ttcacggtat
    13081 cgaaattcac ttgcaatttc tactttagct ttaactttag caattctttc aaacaaataa
    13141 gcacttgcca ttgcagcatg atagcttgtt ccacaagcac aaagcgtgat ttcatctact
    13201 tgacttaaat cttcattgtt tagctcatca aaaacgactt cattgccttg aatacgcccc
    13261 attaaaactt cactcatcac gcgactttgt tcataaattt ctttttccat aaaaaaacga
    13321 aagccgtctt tttttgcata agccttatcg cctgaaagct tagaaaaaca aagtgatttt
    13381 aaaatatcat tttcataaac gacaagctca tctttactcg cgtatcccaa gcttaaatct
    13441 tcaagataca ttacctcatc acaacttcct atcaaaggcg catcacctga agaaaaatac
    13501 cattctttat ttgcattttt accgataatc aaaggagcag cattttttgc aaaatacaca
    13561 tgattgggat ctttttttgt tactaacaaa gtagcaaaag caccgcgaag ttctttgatg
    13621 gttttttgcc aagcttcaaa aactcccaaa tttcttgcat ataattcaaa aagctggaca
    13681 ataacttctg tatcggtttg acttaaaaaa ctcacgcctt ctttttcaag tttatctttg
    13741 atttctttat aattttctat aataccattg tgaatcacac aagaatactg tcctaaatga
    13801 ggatgtgcgt tgatttcagt aggcttacca tgagttgccc atcttgtatg acctatagca
    13861 aaaccataac cttgactttc aaaatccgtg catttattcg ccaaattttc aagctttcct
    13921 acagctttaa aaaaactgag ctctccttct tgcatcactg ccatacccgc actatcatag
    13981 ccacgatatt ccaattcttt aagtccattt agtataattt gttttttttc attatttcct
    14041 atataaccta cgattccaca cattttttta ctcacttatt aataaattaa ctaacttttg
    14101 ctcgctatgt tctaattttt cattcttttg aaaaataaaa atattacgcg tcctttgtct
    14161 tatggtttga atttttgctg cacataaaac aagttcaagt tcattaaaaa cattcatcaa
    14221 atacgccatt aaaccctgct gatctttcgt attaagacct aatttggcat acattttaga
    14281 atagtttaag tctaatttta actcatcttt tttaatgatt ggctttttaa tttttttcaa
    14341 attaaaacca gaaagatttg aatttaaaag ctcgcaaagt tttagttttt gctcatcact
    14401 gataatatta tcatattcaa atcttaaata aattttatta tcaaaaagtt caaaaaaatt
    14461 catgaaaata agatttaaat ttgttaaaga acttaaaata atggcaatat taaaatgaag
    14521 tggtgcaaca atttgcaaac taagatttgt ttcattatta aaccaaaatt taaaatcatt
    14581 ttctttggct aatttagaaa tcataacaat atcttcaaaa gtatttttta taataaaaag
    14641 atttgatttg atatgtatga ttttatcttg caaaatttca tcttgctcta aaaaaatctt
    14701 acttctttta agtgttaatt ctttttttac tcttcttgcg ctttcttcaa gtagattttc
    14761 atcttcaaaa ccttgttttg cattttctaa aagtttatca agaactctaa aataaaaagc
    14821 attataattt aaagccttag cctttagcca agttaaagta tataaaagct ctaaattttc
    14881 taaattttct agcttagaaa ccaagctact tacaacaata ggattgtata tatcttcttt
    14941 ttctacaaga tcttttaagg cattattgtt tttaaatatc ttaagacccc attctaaaat
    15001 ttcattcttt aaatcaaatt tagagcaata cgctctatat atgcctgcta aagaaatttc
    15061 attttcactt tctatagcgc ttaaaagtat cacaagcttt aaaatcattt tttcatcggt
    15121 tttaagtttt tggagtatct caagctcatc ttcgtatttt tcaaattcac ttaacataag
    15181 aaaaacttgc tcatcaaaac tataatttcc ttcttcatcg cttaaaaaac gaactgtcca
    15241 aaaaggctta cataaatctt ttaaaattcc actatcaagc aaaagtttta aaacacaaaa
    15301 actatgcctt ttataaaaaa ttttctcaaa aagtattaaa gctttttcta tatctttttt
    15361 accgtatttc aatcttctta gggcaaaaac caagttaaga tcgaaaataa catgtttatc
    15421 ttcaagtttt aataagtatt ctaaaacttc cacaagagtt ttaaatttat attcttgttt
    15481 aagagtatga tttaatccat cttgaatttg ctttgctaaa aagtgtgtat aaaaacctat
    15541 agtatgcata ctttgcaaag ccttttgaac caacaactca tttgctccaa aatgtttttt
    15601 agctttttta tacattaatt cactcaaatc atgaacatta ataagtaaaa attcatcctc
    15661 atctttagca cttaataaat tcatcgctga ttttaaagaa agtaaaaaat ctccagctaa
    15721 acgcaactcg cttaaatttt tttcatctat aaaatttaaa gcataatttt ttggagaagt
    15781 cttaaaaaga acaagcaaac tctctaagga tcttaaatga tttaatccgc caaaatcttt
    15841 taagatatta aattcttgct ttataaatgg aatgtcaaat tctttaaaat tttctagcaa
    15901 aagcttggca aaatcatttt tattttcttt taaaatactc tcaaattttg tcttaatccc
    15961 tttaaataaa atcctagaac cacatatgaa acgagtttgt attatagaag tcttaagctc
    16021 attgctagca ttataaagtc cattaaattc taagataacc gaatcaattt gcaaatgcgc
    16081 atcatttaaa atttcgataa aagccttaat cataggtttt aaatgaaaag ccttaatatc
    16141 tttataaaca aaaatcaaag aaatactttc attaaaacaa agactattat ttgcatatgc
    16201 tttgcttgct aaaacacaaa aagggatatt atcacttgga ggtgaaaaat catcaaaata
    16261 atctttaaga actatatcat aagctttttt tatgaaatta tccatatttt tagaatgata
    16321 taagctaaac gccccttgct taagaaaaaa ttttctacaa ctttgggtat aggaactaag
    16381 atttttttta aaaataagct gaatttcaaa aataattaag tcttagaaag ttaaaattag
    16441 aactttataa acactcacag ggtaagtgag cgacaaaggg ttaaaaatat ggaaaaagaa
    16501 gttattgcgt atttggacaa tgagacgata attgactctc aaagtgtgaa aaatacaaat
    16561 ttaaaagaaa tttattttga taattctaaa gaaagtttag aagtgatacg ccattcttgt
    16621 gcgcatttga tggcacaggc gattaagagc ttgtatcctg aggctaaatt tttcgttggt
    16681 cctgttatag aagatggatt ttattatgat tttcgtgtag aaagtaagat tggcgaagaa
    16741 gatttagtaa aaattgaaaa aaagatgaaa gaacttgctg aagcaaagat tgaaatttca
    16801 aaatatgaaa tcacaaaaaa cgaagctttg gctaaatttc aaaatgatga tttaaaacaa
    16861 gaagttttat tgcgtattcc tgatggagct gtaagtattt ataaacaagg tgaatttgaa
    16921 gatttgtgtc gtggtcctca tgtgccaaat acgaaatttt tacgcttttt taaactcact
    16981 cgtgttgcag gagcgtattt gggtggcgat gaaaaaagag aaatgcttac tcgaatttat
    17041 gggactgctt ttgcagataa ggaaagttta aaagagtatt taaccattat tgaagaagct
    17101 aaaaaacgcg atcatagaaa gcttggaaca gagcttaaac tttttacttt tgatgatgag
    17161 atcggaggag gccttcctat ctggttaagt aatggtgcaa gacttagatc taaacttgaa
    17221 catatgcttt ataaaattca tcgtttgcgt ggttatgagc ctgtgcgtgg gcctgagctt
    17281 ttaaaagcag atgcatggaa aatcagtggg cattatgcaa actataaaga aaatatgtat
    17341 tttacacaaa ttgatgaaca agagtatggt attaagccta tgaactgtgt gggacatatt
    17401 aaaatttatc aaagtgatgt aagaagctat cgtgatttgc ctttgaaatt ttttgaatac
    17461 ggcgtagtgc atcgtcatga aaaaagtggg gttttgcacg gactttttag agtgagagaa
    17521 ttcactcaag atgatgcaca tattttttgt atgccaagtc agattaaaga gcaggtttta
    17581 gaaattttag cttttgtgga taatttgatg aaattatttg attttagcta tgaaatggaa
    17641 atttcaacta aacctgaaaa agccataggt gatgatgaaa tttgggaaat agcgactaag
    17701 gctttaaaag aagctttaga tgaacaaggt ttaaaatacg gtattgatga aggtggcggg
    17761 gctttttatg ggccaaagat tgatattaaa atcaccgatg ctttaaaaag aaagtggcaa
    17821 tgtggaacca tacaagtaga ttttaacctg ccaagtcgtt ttaaacttga atacactgat
    17881 agtgataatg aaaaaaaaca acctgtaatg ttgcatcgtg cgattttagg ttcttttgaa
    17941 agatttatag gaattttaac cgagcattgt gcgggtgagt ttccgttttt tatcgcacca
    18001 actgcggtgg gtatagtgcc aataggcgaa gcacatattg cttacgcaaa agaaattcaa
    18061 aaagaattat tagagcttaa tatcgatagc gaggtgtatg aaaaaaatga gagcttaagt
    18121 aaaaaaattc gtatcgctga aaagcaaaaa ttacctatga ttttagtttt aggcgatgat
    18181 gaggtggcaa agcgtagcgt tgctttaaga gatagaagag ctaaagaaca aaaaaatctt
    18241 agcttggacg aatttattaa attagttaag gagaaaatga gtgaggtaca cttttgagta
    18301 aagaaaaaga agtattgctc aatgaagaaa taagagcgga tgaaatcaga tgtgttggcg
    18361 atgatggcaa agtttatggt attatcagta gtgatgaagc tttagaaatt gcaaatcgtt
    18421 taggacttga tcttgtaatg atagctgcag atgctaagcc acctgtttgc aagatcatgg
    18481 actatggtaa attccgttat caacaagaga aaaaacaaaa agaagcaaag aaaaaacaaa
    18541 aagtgattga tataaaagaa atcaaacttt ctgtaaaaat tgctcaaaat gatattaatt
    18601 acaaggtaaa acatgcttta gaatttttag aacaaggtaa gcatgtgaga tttcgtgtgt
    18661 tcttaaaagg acgtgaaatg gcaactcctg aagcaggtgt agctttgctt gaaaaaattt
    18721 ggactatgat agaaaatgaa gctaatcgtg acaaagagcc aaattttgaa ggtcgttatg
    18781 taaatatgct tgtaactcca aaaaaagctt aatccacttt tgtggataag gcttttaaag
    18841 gttttaaatt ttgaaagaaa atccttcttt tttaaaagag caaattataa cttatcttgg
    18901 aaataaaaga gcacttttaa gttttttaaa taatggcttt aaggtagcta aaaaagaact
    18961 tggtaaagat aaatttagtt tttgtgatat atttagtggc tcaggtgttg taagtcgttt
    19021 tgcaaaagca cactcaaatt atattttagc caatgattta gaagattatt caaaactcat
    19081 caatgagtgt tatcttgcta ataaagacaa agatttactt caaaatataa aaaagtatta
    19141 taaaaattta atccaaaatt tagattttca aaaaggtttt atcagtgagc tttatgctcc
    19201 aaaagatgat gatgatatta aaaaaaatga aagggttttt tatactttta aaaatgcttt
    19261 atatcttgat actataaggc aaaaaatcga aaatgaaatt ccaaaagaat tgaggcattt
    19321 ctttatagct cctttgattt atgaagccag tgttcattca aatactagcg gagtttttaa
    19381 aggtttttat aagggtaagg atggcatcgg aaaatttggt ggcgaaggac aaaatgcact
    19441 taaacgcatt aaaggagaaa tagagcttaa aatgcctatt ttttcaaatt tttcttgtga
    19501 atttgaagtg atgcaaaagg atgcaaacat acttgcaaaa gaacttgatt tttttgatgt
    19561 agtgtatctt gacccccctt ataatcagca cccttatagt tctaattatt ttatgctaaa
    19621 tttaattgca aattataaaa aacctgaaga aatttctaaa atcagtggca ttccaaagga
    19681 ttggaaccgc agtactttta ataagtcaaa atttgcccaa gatgctttat ttgaacttat
    19741 taatgattta aaagcaagag tgattttact ttcttataat tgtgaaggtt ttgtaaaaaa
    19801 agaaattttt ttaaagcgct taagcactct tggaaaatgc cggattttag agcaaaaata
    19861 taatactttt agagcttctc gcaatcttaa aaatcgcaac atccatcttc atgagcaact
    19921 ttatatttta gttaaaaatt agtttttcgt gctaaaattg cacttaaaaa tgaggaggga
    19981 tttatgaaac taaaattatc tttttgtgca ttaatggcat ttggtttttc taactatctt
    20041 tttgcttcag ctattgatcc aaagttattt tcaagaatat cttgattttg ccagtaataa
    20101 aggcaaattt caagtaggtc aaattggctt ttaaatttta gcaaaaaatc ctagtcaaaa
    20161 tatctctttt aatgtgccta tgattgattt ttctacttca aatcgtggag gaaaattcca
    20221 aggagaattt accaatatag gacaatctta tatagtcagc gcttctcata tgagtacaag
    20281 tttaaatact gggaagtaaa taaaggctat gtgaaacaag gtagtgtttt acactttgga
    20341 ggggtagcaa atagaatcgt aagctcaagt gataatttta cttataaaaa agaaaatgtg
    20401 gattttgctg ttttaaaaat gagtaagatt agtctcaata aaagtgcaaa tttgagtaaa
    20461 gatttaaatc ttattgaaaa aaattctggc gatggtggag atatttatga atacaaggat
    20521 ccattttggg atagttgtca aagtggaaaa tgtgattatt caaaaggtaa aggcaagctt
    20581 tttgatagtt cgcgttatga gtactttgca agagagggaa gtggtattgt agctttaggt
    20641 tttgaagata caaataaagt acccattaag atttttgatt ctaatgaaat caatttagga
    20701 ggttttgtca gtttaactcc taaaaatact gaagataagc gttttaagtt gcaatttctt
    20761 aattatacca atgataaaag aaattctttt acaagttctt taatatcctg ggattctgga
    20821 agtggagtgt ttatgataag atggataaaa atggtattta gtgggtgtgg taagtacgag
    20881 taattgtaat gtccatttta ctatggatat acttgtttac aggttgatta tgctttgatc
    20941 aatcaagtaa agatcaatga attttaaaat gctcataaag tagccatagg atctggaact
    21001 tatacactta gtagcgatgg tttggtgaaa gatggtaaaa aatagaaaat gtaagtttga
    21061 tttctaagac taatgtgggt tatgtaagct ataaaaattc ttttgatgat aaaaataatt
    21121 gtgataagag aattgaagaa atgcaaaata gcaaggattt gtatttttct caaaatggaa
    21181 gtataaattt aaatagcgat gtggatttag gcgctagtgt tttaaatttg ataaaaattc
    21241 aaattggcaa ataacaggcg ataaatggct tatacatggc ggaatttatg ctgataaggg
    21301 ttcaaggtag aatataatgt taaaaccaaa aaagatgatt ttctttataa aatgggtgaa
    21361 ggagagcttg ttgtcaaaag tcaaagtgtg gatacaggac ttagaatggg tgaggaccaa
    21421 ggtaagtctt gagggtgaag gttgaagttt tggcgaaatt tatatgaatg gtggaacttt
    21481 ggatctatcg ggcttaacat taaaatttga tcaaattaaa gctaactcta ataatgtttt
    21541 tatcacaagc tctaaagcag gggcaaattt aaatttagaa aacaagcaaa attatcttta
    21601 tcatggcaat atttttcaga tgaggccata acaattagtg ctaatacaga taaagctttg
    21661 atttttgatg gtaatattta caataaagaa ggtgttttta ggacagaaaa tgccaagtta
    21721 aattttcaag gacatgctag aatacacgct tatgtaagca aagaacaagc taaaaaactt
    21781 caagaacatg gtttaagtgc tttaactaag cctgtaagtt ttacacaaga agattgggaa
    21841 gatagggttt ttgttttaaa agagcttaat ttagaaaaaa agcgagtttt atttagggcg
    21901 taatgtaagc ttaaaagtag aaaaccttaa tgctaaaaat tccaaaatag agcttggaag
    21961 taaaaatttg tggatcgatg aaaaagatgg ggaaaatatt attgataaga ctgatgatta
    22021 ttcttatgga gatgttgtat aaacaggagt tggcaaagaa atggcttttg agcaaaagct
    22081 ttaaaatacc caaaatgcta agatagaaaa ggtttatttt agtgtaaatt taaatcttga
    22141 tcattctgat gttactttgc aaaacacatt ttttagtggt aatatcaaag gtatcaatga
    22201 tacgcaaaaa aaaatcttgc gattaaagat tctttgcttg agtctcatat ataaatgagc
    22261 aatcttcaag tagaaaaaag tgctatttat aggaaagttg atgcaaaaaa attaagtgca
    22321 aataatacaa tatttaaaat caatgtggat tttgaaaatt ctaaagcaga ttatattaat
    22381 tctaaggaaa gcacacaagg agtaaataat actttagtat taatttttct taataatcct
    22441 agtaaaaagc gggtttaaat atcttactag ctcatttaaa agatgaaaat aaacatttaa
    22501 caaaggaatt ttttactatg tcaaatgtga gcaaggtttt agtacgtata ccccaaatgt
    22561 tgttttttct cataatgagg aaaattttgc ccagagtgga atttagaaaa aattaattct
    22621 aagattaaag atgaatattt ttttactaat gataatactc aagctattgt aaaaactaaa
    22681 tctatacttg ctcaagctat tttaggctcc atgatagaat ggaataatat gcacaaaaga
    22741 atgggggaat tacgcaataa tccttatgaa agtggtgtat agttaagaac ttttggatgg
    22801 ggtacgagtg atgagtataa tagtggaaaa tactttgaaa ttcaaagcgg acatgataaa
    22861 ttaaacgagt attcgaattt tgagctttac agtggagtaa gtttttatag tgattttgtt
    22921 ttagatatat ttattatcaa aatgaaataa atgcaaattt tattccagga aatcaaggta
    22981 gattagatga taatgatggt tcgcataata ttatcttaag tgctgagttg ggttatagaa
    23041 aagcttatga taaattttat cttgagctga gtttggaatt tatcagtggt tatgtaggag
    23101 ctatggatct aaaaggagat attgctagtt taaaacgatt ttcttatatt cctttagtcg
    23161 taaaaacagc atttttcata ggaagtcaaa attaaaattt aaattttaga acaggacttg
    23221 gtttgtatgc ggatctgatt aaagcaggag atcaaatctt ggaggatcaa gcaagtcaga
    23281 gaagatatga aggaaaaaag atcaaagaat gtttataaat ttaggaaatg attataagct
    23341 taacgataaa acacgcttta gttttgaatt tgaaaagaca ttttttggcg atttaaatgt
    23401 agattggagt gcaaatgcta atttaagata
//
LOCUS       DAPIWV010000014        22724 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.015, whole genome shotgun sequence.
ACCESSION   DAPIWV010000014 DAPIWV010000000
VERSION     DAPIWV010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.015"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            61..990
                     /locus_tag="RJ272_000363"
     CDS             61..990
                     /locus_tag="RJ272_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HDV7381488.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSNSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAAGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIILTGIGYKF"
     gene            complement(1040..2354)
                     /locus_tag="RJ272_000364"
                     /pseudo
     CDS             complement(1040..2354)
                     /locus_tag="RJ272_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
     gene            complement(2535..3470)
                     /locus_tag="RJ272_000365"
     CDS             complement(2535..3470)
                     /locus_tag="RJ272_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HDV7381489.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            3541..4773
                     /locus_tag="RJ272_000366"
     CDS             3541..4773
                     /locus_tag="RJ272_000366"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDV7381490.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            4770..5855
                     /locus_tag="RJ272_000367"
     CDS             4770..5855
                     /locus_tag="RJ272_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HDV7381491.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMLFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(5852..6649)
                     /locus_tag="RJ272_000368"
     CDS             complement(5852..6649)
                     /locus_tag="RJ272_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7381492.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFSLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(6660..7952)
                     /locus_tag="RJ272_000369"
     CDS             complement(6660..7952)
                     /locus_tag="RJ272_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDV7381493.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVVFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(8071..9075)
                     /locus_tag="RJ272_000370"
     CDS             complement(8071..9075)
                     /locus_tag="RJ272_000370"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HDV7381494.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            complement(9085..10038)
                     /locus_tag="RJ272_000371"
     CDS             complement(9085..10038)
                     /locus_tag="RJ272_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HDV7381495.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(10025..10717)
                     /locus_tag="RJ272_000372"
     CDS             complement(10025..10717)
                     /locus_tag="RJ272_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HDV7381496.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(10877..11446)
                     /gene="efp"
                     /locus_tag="RJ272_000373"
     CDS             complement(10877..11446)
                     /gene="efp"
                     /locus_tag="RJ272_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDV7381497.1"
                     /translation="MASYSMGDLKKGLKVEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDEDVGE
                     AKKWMIDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            11562..11885
                     /gene="rnpB"
                     /locus_tag="RJ272_000374"
     ncRNA           11562..11885
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="RJ272_000374"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(11882..12157)
                     /locus_tag="RJ272_000375"
     CDS             complement(11882..12157)
                     /locus_tag="RJ272_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381498.1"
                     /translation="MKQWLNNFKLALIQEDVDKLEILLDELDVKNFVKNLVKSQPSEE
                     MLKENVKDIFYQLQALLQEAIVLIDQKKKTKAFEIQKFQKALTYVRS"
     gene            complement(12138..12524)
                     /gene="fliS"
                     /locus_tag="RJ272_000376"
     CDS             complement(12138..12524)
                     /gene="fliS"
                     /locus_tag="RJ272_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HDV7381499.1"
                     /translation="MQNSLAYNAYSQNQAGIESPQKLIEMLYEGILRFCSRAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLDYEKGGDVAHYLSGLYTREIQLLSLANLENNEER
                     INEVINVTKGLLEAWREVHSNETMAQ"
     gene            complement(12535..14463)
                     /gene="fliD"
                     /locus_tag="RJ272_000377"
     CDS             complement(12535..14463)
                     /gene="fliD"
                     /locus_tag="RJ272_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HDV7381500.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFINANLTGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGKYTSDSEA
                     ETIFKNLGWELDTTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKQGSLNQYLDSSGTGNKGL
                     DFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYDQNGVKGFKLNFSGDGSSDFSIKGNATILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLSTITNMINAANNSNN"
     gene            complement(14466..14831)
                     /gene="flaG"
                     /locus_tag="RJ272_000378"
     CDS             complement(14466..14831)
                     /gene="flaG"
                     /locus_tag="RJ272_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HDV7381501.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDRQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(14988..16790)
                     /locus_tag="RJ272_000379"
     CDS             complement(14988..16790)
                     /locus_tag="RJ272_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HDV7381502.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(16787..17710)
                     /gene="hemC"
                     /locus_tag="RJ272_000380"
     CDS             complement(16787..17710)
                     /gene="hemC"
                     /locus_tag="RJ272_000380"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDV7381503.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(17707..18096)
                     /locus_tag="RJ272_000381"
     CDS             complement(17707..18096)
                     /locus_tag="RJ272_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDV7381504.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(18093..19802)
                     /locus_tag="RJ272_000382"
     CDS             complement(18093..19802)
                     /locus_tag="RJ272_000382"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDV7381505.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIIGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(19786..21084)
                     /locus_tag="RJ272_000383"
     CDS             complement(19786..21084)
                     /locus_tag="RJ272_000383"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDV7381506.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(21084..21977)
                     /locus_tag="RJ272_000384"
     CDS             complement(21084..21977)
                     /locus_tag="RJ272_000384"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HDV7381507.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(21991..22527)
                     /locus_tag="RJ272_000385"
     CDS             complement(21991..22527)
                     /locus_tag="RJ272_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HDV7381508.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(22530..>22724)
                     /locus_tag="RJ272_000386"
     CDS             complement(22530..>22724)
                     /locus_tag="RJ272_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HDV7381509.1"
                     /translation="NLGALEKVFEEFFADHIAMVELLEKQGLTEMDVKNFILENGDFI
                     EERQNDIYIELGAKILGHEG"
BASE COUNT         7962 a         4095 c         2818 g         7849 t
ORIGIN      
        1 tattagttac aattataaat gtaatttaat tacaaacaac aaacatttca aggagaacat
       61 ttgaaaaaat atttattttc ctgtgtttta gcctccattt taacccaatc agctacggct
      121 gtagaatttc aagaaggttt tagtggaaat ttaagcatag gtgtgggtgc aagggatatt
      181 aaaagtaata tttcaacctt ggcaaacagc gattatctaa gcagttacaa tgctgataat
      241 tcaaactcct ctttcattcc ttttatcggt gtagaacttt actatggtaa tcttatagat
      301 aatgatagaa tttttattaa aaactacaat ggaagagata tcagcggtat agctttaggc
      361 tacgaaagag cttatttaga gcgttttagc acttcttttt ctgtgatttc ctctttaaga
      421 gaaaaagctt atgcaaatcc ttatgcaaca ggaaatagag aagaaactga tgttgataga
      481 tatggtttta aaatctctca actttatgaa agtgattttg ggaaatttac cacttcatat
      541 ttatttagca aaaacaaata tgataaagac actatcgcac aaagctcttt aaaaagggag
      601 gggtattatc acgaatttga attaaactat aattatagct tattaaacct agggttaaat
      661 tatgattaca atgatgcaga cggaaaagct caaagctatt caagatatgg ttttagcata
      721 gggacaaatt tggcttttgc taatgattac atcttcactc caaatttaaa tcttagtaaa
      781 tatgaagcag caggaactga tcctatcttc cacaaaaaac aagatggtaa tatagttaag
      841 cttaatctaa aagttgttaa aaatcaattt ttgggttata acggacttta tggttttgca
      901 aattatggca tagaaaaaag aaatagcgat ataggatttt atgatgaaac ctatcaaatt
      961 atcctaactg gtataggata taaattctaa aaaattataa aaaaagctcc tttgataaaa
     1021 tttaaaaaag atctatctcc tataaagata gatctttaaa aattctttta agaaaaatac
     1081 aagctaaaat caaaacacaa aattcagcaa aaaatggact tagccatact ccatttaaac
     1141 ctataaaata agataaaagc aaaagaaaaa acaaaggtat aaataaattt tgcgccaaac
     1201 ttaaaaccaa agaaaagctt gccttattaa aagctgtcaa aaaagaacca cttagaacat
     1261 taaaccatgc aaaaaaataa ttaaaagcaa aaagcatcaa agctgtataa gcaaaagttt
     1321 taaattcttg attgttttct tttgtaaaaa gcgtgattaa attttctcca aatatcaata
     1381 taagcactat agagaataaa gataaaaatc cccctgcaaa aaataccact tttacaatag
     1441 ctttgattct tgaaaaatct tttttagcat agttgtaact aagcacaggc tgcattgcat
     1501 cacccatagc aataataagc attataataa aactatcaat atataaaact atagaaaagg
     1561 ctgccacggc ttgagtatca gaaattttta ataaaacaaa atttgcaaaa atactatata
     1621 aagatcctga aatattgcca aaaaactcac tgcttccgtt ataaagaata tttttaaaaa
     1681 tttttaaatt catgtatagg cttgaaattt taagctctaa attttgaaac aagaaaggaa
     1741 aaattccaaa aataccacct aaaacaagtc ccaaacaagt tgcaagagca gctgaaaata
     1801 agccccaacc caactcgact ataaaaatat aatcaagcac tatattgctt aatgctataa
     1861 ttacattcat taccatacta taagcagttt ttccgcaaat tcttaaataa ttatccaaag
     1921 caaaagaaag catagtaaag ggtgcaaaca aagcaaaaac aaacatacat tctttagcca
     1981 tcgttttaat ctcatcgcta acatttaaac aatcaatcaa aacaggtcct aaaaaatact
     2041 ctaaaattcc aataaaacaa gagattataa aaataatcaa catacttgag ctaaatatct
     2101 ttctagctaa attcttcttg cctaaaccta aatgcataga aatttgcact gctgatccta
     2161 tggctatcat atcagccaaa gcaaaagaca tcatgataaa gggaataatc aaggctagtg
     2221 ccgctaaagc atcacttcct agatatttta tcaactatat aataaaaaga aataaaagcc
     2281 atgcttataa catttggcac ggcacatttt acaaaaagcc taaaagggct taaggtgcta
     2341 aaaatacttg acataataat ccttaaaata tttaaaatta aaaatatttt aaaccgctaa
     2401 taaaatgcca aaagtcctag tatgtaagaa tttaaataaa gtaatttcgc aataagttta
     2461 ttaatattta ttttattttg catatgaatt ttctagatta aactaaaata aaaatttagc
     2521 ccaaaggcta aattttaaag cacagaaaga attttcacag cgtcatttaa ccctgtaact
     2581 atacttgctc catttttagt agcaatatct cctgctacaa agatgccttt aacattgctt
     2641 tgtttgtttt catccattaa aggcacgcct ttatcatcaa cattaatccc acatttttgt
     2701 aaaaaatcaa gtggagtaga accaccaata gcataaatga ttctatcata aatatcgctt
     2761 gtaccatcgg taaaatttac tttagctttg ccattatcat cttctacttc attaatgtca
     2821 attcctaatt ttaactctac cttacccgaa tttccagctt cgtgaatatc tttaagattt
     2881 atatcattta atcttgtaaa ttctttttta cgataacaaa ggctaacttg atttgaattt
     2941 gccaaatcca cagcgtattc tgctgctgaa tttccgccac ctacaacaag aattttttca
     3001 tttcccaaaa ctgaattggc attaaaatta atgatttttg ttaaagtcat aggaagtttg
     3061 taatcaggtt tattaggttt acccattcta cctatagcaa caataatgtt tttacactca
     3121 taaacacctt tagctgtact tactaaaaaa actccatttt catttttaac gctctcaact
     3181 tcagaaccaa attcaacttc tatattgtgc tcttttaaag cgttttgaaa agtttctata
     3241 gtgctttctt tggtgccatc ttcaaaagga acatgtccgt gattggttcc ttcgcatccc
     3301 ttataagctt tatctactct tttgccatcc ttataaaatt gcattaaagt ttgacaaatg
     3361 ttatttgatt tttctagtat caaaacttct ttgtttttaa gcttggcttc aactgcacag
     3421 cctatccctg ttggacctgc acctactaca attaaatcta tttttttcat ttatatttac
     3481 ctttcaattc taaatttttt tgtataattt atcaagtttt ttgtaaataa aggattaaaa
     3541 atgcgaaatt tgcttgaaaa tattaagaaa aattctcaaa aactacttaa cttaacgccc
     3601 aaagataaag aaaaaattat tctaaaatta gctcaaattt taagagaaaa tttcaaaatt
     3661 atcctagaag caaataaaaa agatatggca aatttcacaa aaagcggagc aatgaaagat
     3721 aggcttttgt tagatgaaaa acgtatttta gctctttgcg aaggcctaga aaaaatcgct
     3781 tacatcgaag atcctatagg caaaatttct aaaggctgga aaaattatgc gggtttaaac
     3841 atacaaaaaa taagcattcc tttaggactc atttgtgtta tttacgaagc aaggcctagt
     3901 cttagcgctg aaatcgcagc tttaatgata aaaagttcca atgcttgtgt atttaaaggc
     3961 ggaagtgaag caaaatttac aaatgaggct atatttactc ttgttaataa agtacttaag
     4021 gaatttgatt tgcaagattg ttttgctatg tttacccaaa gagatgaaat cttgcaaatt
     4081 ctagcctttg atgatttaat cgatgtgatc atacctcgcg gaagttcaaa tatgatacaa
     4141 gaaattgcaa acaataccaa aattcctctc attaagcaaa ataaaggctt gtgtcatgct
     4201 tttgtagatc aaagtgctaa cttagatatg gctttaaaaa taatccttaa tgcaaagtgt
     4261 caaagagtaa gtgtttgtaa cgctttagaa acgcttttaa tccatgaaaa aattgctaaa
     4321 aattttataa gtcttttaat acctgaattt gaaaaattta aggtaaaaat tcacgcccat
     4381 gaaaatgctt tggcttattt taacaactca aatttagaaa tttttaaagc aaatgaaaat
     4441 acctttgata cagaatggct tgattttgct ttaagtgtaa aattagtaaa agattgcgat
     4501 gaagctatag agcatatcaa taaacacagc tccttgcatt ctgaaaccat tatctcaaat
     4561 gatgcttcaa atatcgctaa atttcaacgc cttataaact catcttgtat ttatgctaat
     4621 gcttcaacgc gttttagcga tggaggagaa tttggctttg gtggagaagt tggaatttca
     4681 accagcaaat tgcatgcaag aggtcctatg gggattgaag atatttgcac ttataaatat
     4741 ataatcaatg gggaaggaca aattcgagag tgaataaaat agaaatacta aagcaacact
     4801 ttaaagaaat tgctaaatta aattcaagcg aacaagtttg gcaaatgctt ttttttgcgg
     4861 ctttaggcgt aggtatagtt ttagggctta gtgtattttt tggaaaatta aactatggac
     4921 tcattgccat gataggagct ttgtcttttt tatatgttcc aaacactcct ttatatcata
     4981 gaatggctgt tgtgatgtgc tgttcttttg gcatagtttc tagttttttc ttaggaattt
     5041 taactcattt tttgcctgca atttttgcct tcatccccat aggaattatg gccatgggaa
     5101 gttctatttt aattagatac tataacattg gtgcacctgg atattttttc tttgtatttt
     5161 cttgtgtttt aggagcctat tctccttttg aagctaagga ttttatcttt ttagtaggtc
     5221 ttgtttttct tggagcaatg gtagctaatt taatggcttt gttatattct atcgttgtga
     5281 tttatggatt taaaaatgct ttacctagcg aaattccacc tagagaatac ataggttttg
     5341 atgcagtttt tgtggattct ttgatcatgg gttcttttgt ggctttttct atatttatag
     5401 gaactttttt agaacttgaa agaagttatt ggatagccat ttcttgcaca gctattatgc
     5461 aaggtgtaac tttaaattct atatggatta aacaaattca gcgcatcata ggaacggcct
     5521 taggagtatg ttttgcatgg tggcttttat ctaaacaatt tcacgatata gagcttattt
     5581 tacttatgat gtctttgttt tttataggac aatttttagt caatcgaaac tatgctttag
     5641 ctatgatttt ctttactcct tatgctactt atctttcgga agcagctaat tttatgagtg
     5701 aaaatgcaga taaattaata ctcgctcgtt taattgatgt tgtaatagga agcattttag
     5761 ggcttttagg tggttttgta atttacaaac cttatctaag agtacatttt gaacgcattg
     5821 caaaatacat ctttaggata aaacaaaaag cttaaaagcc aaataaagca caagcattat
     5881 cccctaaaat ttgctcttgt tcttttttag atacgacaac ttcattaaaa gctactagag
     5941 ccgatgaaaa attaacattt gattcaaaat ttgtatgtgg ccaatcgctt ccaaaaacaa
     6001 aattgctaag tgaaaaatgt tcttttaaaa tttcatatat tttctttgca aattttacag
     6061 cttgttcatt attagcatag tctatttttg ctctataaaa accgctaatt ttaaaaaata
     6121 ttctagagtt ttttaagcaa attaaatcct ctaaatttgt taagtttgca ttagctcttg
     6181 ctaaatgatc gataacaata ttacaaccat aaggaattaa attttcaaca atatcaacaa
     6241 gattattatc taaatctctt tgaatttcta tttgcatttt aagcttactt aaattttcaa
     6301 aaaattgagt ccaaaccata cttttaaaat ttggtaattc tttgccaatt aaatttaatc
     6361 taactccaca agcttttctt tcttttagtt ttttaagctc atcaaattta atattttcat
     6421 caaccacaac tatagctttt atattttcat ctttttctat actctgaagc aaaaattcat
     6481 tatcaatacc taaaaaactt ggctgaacta aaaccccttt attaaaatca taatgatcta
     6541 aatttgcttt ataatcttta aaactagcgt cataatcagg cttatatctt gcatttgcaa
     6601 ccgtatttaa ctttttcaaa aatatatgtg cgtgagtatc aatcttcatt aaattatcct
     6661 tataaaataa aactcattat aatagtagct aaaatcgccg ctataaatcc tataggcaca
     6721 gctttaataa gtaaatcttt aaataatttt tccttatatt tatcagggca agatcctaaa
     6781 attagacttc ctccagaaga aaaaggagaa atagcagaag cttgagcccc tacaacaata
     6841 caagaaaaaa gcaatgcctc gcttaatcca ctacttgcag caatgcttgg aactatagga
     6901 aaaagcgctg gagtaaccac acccaaagta cttgaaaaaa gcgacataaa agctgcaata
     6961 gcacacatta ttaacggaat aaaaatcaca ttgatctcat tttctacaag atctgaaaat
     7021 aattttatag cccctgcttc aaccgctatg ctaattaaca tccctactcc acaaatcatt
     7081 atcaaggttc cccaaggaat taaagcaaca acttgtttct catcggccaa ttttaaaaat
     7141 aaagcaatgg caacaaaaat catggctatc atagctatat ctattttttt attaaaataa
     7201 ctaattgtct cattatgtgg aaaaataata tttagcacag gaaagattaa aacaacaaca
     7261 atcatcataa acataagaat taaagtagtt ttttgtttat aatcaaatga atcaggtttt
     7321 gaaataacac tgatttttat attattttta aaagcattaa acacaaaaaa agataatacc
     7381 acaataggca aaattatagt aaaagcaaaa ataatactag aatttacaaa agcttcattt
     7441 gcttcaatgc ctgaattttc catcaatcct cgaaaaataa tcccactttg agaagtcata
     7501 aaatttgctc ctcccaaagc accatagttt atagccatag ctccagcaat tttgcttaaa
     7561 ccgattttat cgcaaagtaa aaaagtaagt ggtgccataa aagctaaaac tgtataaaaa
     7621 cctgctccta aagcagctat aatagcacta accacaaaaa caacaaaagg aagcaaataa
     7681 ggatgattag caaaacgata catcaaatgt ccagctaatt tttcaagagt tccatttacg
     7741 gttgcaaaat tataaaacaa tgaaacagca aaaataacaa aaaatataga aataggccaa
     7801 aaagctatga tttttttagg agctaaatcc ataaaaaaag ctcctataat ataagcaaaa
     7861 atcatagcaa aaattccaac attatgtcta gtaatatagc ccaaaataat agccactata
     7921 atactagaga tgattaaaaa aaccattatc atcctttaaa atattatagg gcttataata
     7981 tcaaaaaata tatttttcaa agcataaaaa caaaatctaa atttaaaaaa tatctattta
     8041 gtaacaaatt tactcatctt atgaaatttt ttataaaata tccacatcca tagcaagcaa
     8101 agcaaagctt cctagccaat gcgacccaag ataatcatct tctatatgag ctatggcttt
     8161 atcaaaatgc tctgtagcat tatttcttaa aagaattttt aaattttcat cgcaaaaatt
     8221 tgaaagtatt ttaaaacacc aagcacgact taaatttagc ccatctagat gtgctatttt
     8281 accatcgctc ctatcactca cactcacagg ggtaaataaa gttgcaggct cttttgcttc
     8341 taaatttggc aaatatgctt taaaaaattt tacaaaatca tttttatgta aaacagcact
     8401 taaaagcacc gcttccatca aaacaggaga taaaaactca tctccacaag gctctaaagc
     8461 ttgcatattt ttatcattta aaaaccactt tttagcactt tggatgatgc aatactccaa
     8521 ttcttgatct tttttaaatc ttgcatattc taaagcaaaa tacaaagcaa aagagctatt
     8581 aaaatgggtt ccaactcgta taggataatc catcttaggt aaaaactcct taaattcttt
     8641 aacaaagaaa tcagctatgc cttctaaatt cttagcccaa atttcagctt tgtcattttc
     8701 tttagcaagt aaatttatct ccaaagtcag ttttaaaaac catccccatc cataaggtct
     8761 ttcaaaacct ttgtgtgcag ggttttgaag atatttaagc tctccttctg ctttttcttt
     8821 gctaaattga gaatctagag ctttgatgat ttcatccttt ggagcaaaat gagaaaaatc
     8881 ttttaaaatt ttcaccaaaa gccagtgaga atgcacgcta gaatgccaat cataagaacc
     8941 ataaaatata ggatacataa gttttggtgg tttaatatca ttgatatcat taaaagaatg
     9001 tgtaatttta tttggcaatt ctctaaaaat attttctagt gcaataaagc taaattgttt
     9061 tataaatttt tccattgttt ctccttaaaa tctaaaagct aaaaaataca ttaaaaagat
     9121 attagccaca agcaaaacaa gtcctgacat aaactgggct ttaattacgc catttttatc
     9181 atccaaattt aaaagtgctg caggaactat attaaaattt gcagccatag gcgtcattaa
     9241 agttccgcaa aatccactaa gcattccaat cgcacctata atagcaggat ttgcatgcat
     9301 ttgtatgatt aaaatcggca aagcaatagc agcagtaatc acaggaaaag ctgcaaaagc
     9361 attgcccatt actatagtaa aaagcgccat agcgatacaa tacacagcta ctgcaataaa
     9421 agcattatct aaactaatat aactagataa aagtttagat acttgatcgc ccattcctgt
     9481 agaaacaaaa actaccccaa gtgtagccaa aatttgcggt aaaagcgctg cccaactaat
     9541 gtgatccata gtatgtgctg catctttaac agctctttta ggagaagcct taaacataaa
     9601 acaagcaact actgaagaaa taattatacc tataatcaaa gccatcaatg tagcattttt
     9661 attttcaaaa aaactcaaat agggaaataa aaaagtccca ataagtgtaa tcaaaggaac
     9721 cattaaagca gggataaaaa gtttattttt ataaatattt gcatgtttta tctcgtattc
     9781 tttttcttct ttgctaactt caatctttgc tggttttaat aaattaaatc ctgctataag
     9841 tgctagtaaa atcactatac aacccatcac aaaatgaggc aaaactcctg ctagtaaaaa
     9901 agtaaaacta taacttatcc agaatacccc gccgcttatt cttgatttta tatctttagc
     9961 ttgattagaa aaacttaaaa ttccaaaaac taaaaataaa attcctacaa tataataaag
    10021 caaatcaaga cttatcatca ctcaaccctt tataagtttt ttctaatctt ttatcaaata
    10081 aataaagtct agaacaatgg ataattaaag ccaaaattcc agttggtata gcccaaactg
    10141 ataaatgcaa tggctcaaca ataataccat tgctctcata aaaagcttta ataaataaaa
    10201 tagaatgcac ggctataaaa atatcctctc caaaaaatac agcaacatta tccgttcccg
    10261 cagaaaaagc tttgattttt tgactatctt tatgtgttaa gtttttaaat ttaagcttag
    10321 ctgcagcttc tgccataggg gctattaaag gtcttatcat ctgtgcatgt ccgcctaaag
    10381 ataaaagccc taaagctgca gtaacttgtc taaaaacaaa ataacacatt aaaattcgtc
    10441 ctgtactggc aacttttatt ttggatatta aatttttagc ctgctctctt aagcctttgc
    10501 gttccaaaac agcaagtaaa ggtaaaataa gccaaattat agcaacatag cgattatcta
    10561 caaaagattt tcctatatca ctaacaacct taacaaaatc aaaacctgaa acaagtccag
    10621 cataaattcc aactgaagtt accactaaaa aggggttaat ctttaaagca aaacctaaaa
    10681 caatcaaagg tatagaagca agaagtaacc attccatcaa ccatctccac aatatgaatt
    10741 agaaatatta tagaaatttt aaattgaaga aaagtttaaa aaaatatttt taagaatgga
    10801 atgagaaatt aagtaacaaa ataaatttta tataaattta aaaaagcctt ggaatagtcc
    10861 aaaagctttt tttgtattat ttgttcgctc tttctatata ctcaccacgc acggtatcaa
    10921 cgcgtataac ttcaccttct aacacatgaa aaggaatttg cactactgcg cctgtttcca
    10981 atgtagccgg ttttttattt gatccttgag tatcaccctt aaaatttgga gctgtttcga
    11041 tgattttgag ttcaacaact tgtggaactt ctacgccgat agctttacca ttatggaaaa
    11101 gcacgtctac catcatacca tcaatcatcc atttttttgc ttcacccaca tcttcatcac
    11161 taattgctac ttgctcataa gtttgcgtat ccataaattg acaattttca ccatcatcat
    11221 aaagatactg catagtctta tcttctaaat ttggagcttc acatttatcc cctgcatgga
    11281 aagttttttc aagtacctta ccatcgataa aagatttgat tttaatacgc acaaaagcag
    11341 gacctttacc tggttttaca tgctgatact caactatttt aaaaggaatt ccatcaattt
    11401 ctactttaag tccttttttt aaatcaccca ttgaataaga tgccataaat ttcctttagt
    11461 aaaaaaaata aaaggtaatt ctatcaaatt ttaattgata tcacaataaa actgctttat
    11521 ttgataaaaa aataagcaaa attacgttaa aatctaaact taaagcatag taaatgctcg
    11581 cttctttttt agaagaggaa agtccgagct gctaaagaca aacattccat ctaacagatg
    11641 gctagggcaa cctaagggat agtgcaacag aaagaaaact accacattaa agtggaaaag
    11701 gtgaaacggc ggagtaaaag cccaccagcg attttggtaa caatttcggc tatgtaaacc
    11761 caatgtgcag caagaaggga tggttagtgt ctttgtttta acccttcgct tgattttgtt
    11821 tgcaaaaaca aaactagata aatgagcatt cttgacagaa ctcggcttat cgctatgctt
    11881 tttaagatct aacataggtc aaagcttttt gaaatttttg aatttcaaaa gctttagttt
    11941 ttttcttctg atcaatcaat acaatagctt cttgcaaaag agcttgaagt tgataaaata
    12001 tatcttttac gttttctttt aacatttctt ctgaaggttg gctttttact aaatttttaa
    12061 caaaattttt cacatcaagt tcatcaagca aaatttcaag cttatcaaca tcttcttgaa
    12121 ttaatgcaag tttaaaatta ttgagccatt gtttcattac tatgcacttc tctccaagct
    12181 tctagcaaac ctttggttac attgatcact tcattgattc tttcttcatt attttctaaa
    12241 tttgctaaag ataaaagctg gatttctctt gtataaagcc cacttaaata atgtgccaca
    12301 tctccacctt tttcataatc taaagtattt ataagctcta taaaaatggc tgtggttctt
    12361 tttacaaaat acactctttg ctctatatct tcatttctta tagctacttt agctcttgaa
    12421 caaaaacgca aaatcccctc ataaagcatt tcaataagct tttgcggaga ttctatcccc
    12481 gcttggtttt gagaataagc attataagct aaactatttt gcatcttttt atccttaatt
    12541 attagaatta tttgctgcat taatcatatt agttatagtt gagagctgct gattaagctt
    12601 atttaagata ctttcatact gcaaccattg atttgccatt gtatcatatc ttgtatcaat
    12661 catagcctga gttgagtctt tagaggtatt taatgattta atatcatttg tcaaactctc
    12721 atcatatttt gtaattgaac catcttttcc agtcatctct tgcaacgtgg cttttaattt
    12781 tgaaaaaata cctttacctt ctataggttt agaggttata tttacatcag acaaacctaa
    12841 ttccttaaga atggtagcat ttcctttgat ggaaaaatcc gaactaccat ctccactaaa
    12901 attcaactta aaccctttaa caccgttttg atcataggat tcaaccttaa cttttaaacc
    12961 ttcaatacct ttgctgttta tatgattagc taaattttga agcaattctt cctctgtttt
    13021 tcctgttaat ttaaaattag taccatcaga atttttagat aaatcatatg tttgattatt
    13081 aaaaactata gtaaaatctc ctggtttaaa atctaaacct ttattgccag tgccactaga
    13141 atcaagatat tgattcaaac ttccctgctt aattacttct cctgtgtgat taatgtcttc
    13201 gtatttagta atatttgaaa aaaaactttc agtagagtct ggatcttctt taactttttg
    13261 ttcaaattta gaagaatcaa aactcaaagt gcctgcatca tttaaactta agccaaaatc
    13321 ctgcatagaa agcataacct tagtgttcac tttattacca tttgcatctt cagtagttcc
    13381 atcaacaact tgagaatcaa acaaatcagc aagaatgctt gagcgtattg aatttacttc
    13441 actgatgcct tgtaaagttc cttttgttcc agtttcacta ttatagtcag ttgcagcatt
    13501 aagattggtt actaaatcat tataagcatc caccaaatct tgcatggctt ttgtcacacc
    13561 ttcaaaatct tgctgtacat caaaattaat ttcacctgtt ttatttaaag ttaaagtcat
    13621 tcctacacca agatcggtaa cagtgttact tgatctaaac atcttaatac catcaagtgt
    13681 aaattctgca ttttgcgcag tttggatatg caaagaagca tccttaatac cataaccttt
    13741 tttatcctta gctggatcaa tagaactcgt tgtatctaat tcccatccaa gatttttgaa
    13801 tattgtttct gcctctgaat cacttgtata cttaccattc gaatcttttt ttcccgcata
    13861 gaaacttatc gcactgtctt cgcctgtttc tttactggtt aaagttaagc ggtaaggagt
    13921 gcctttctct cctgtgttta caatcttagc aacaatctct cctccactag cttcattaat
    13981 tttatcagct aaatctctat aggttgtgtt tttatctacc gtaacagtat attctttgcc
    14041 atttgaaaaa aaagtaagat cggtggttcc agttaaattt gcattaataa aaccactgtc
    14101 atttgctaat cctttgcttt gatacacatc tttttgtgca agttgagtaa cattgatatt
    14161 catgctttgt aaagcaacac ccgaattaac tgtaagactt gctggaggat tatcgctaat
    14221 acttcctaca acttttcttt tcgcaaaaac cgtagcatcg gctaatgatg aaacagccgt
    14281 ctgaaaactt agtaatttag ttttgatttc tgttaaatct ttttgtttgg ttgtattttc
    14341 ttcaattttt ttagtataag gatcaatacg agctttttgc tctgcttctt ttaatttatc
    14401 tatagtatct tgagttaaaa ccccagaacc aaatcctaaa ctagatagac taccaaatgc
    14461 catttttaac tctccttatc aaatatcatt cctatcacat ccctaaaata ctcagctaat
    14521 ctcatagctt cttcgctagg aatttgacgg atttcccttc cagtgctttt ttcagtcacg
    14581 ctaatataca tagaaccgat tttatcacta taaccaaaac gaacattggt atctagagaa
    14641 tccatttgct catttaactt ttttgtaata tcagccaact tttcactcac acctcgttgc
    14701 tgtcgatcat cgccttcttg gccttgactt ctatcggttt gaatgtttaa actagcctgt
    14761 gtctcacttg ttctttggct aatgtttgcc aaagctgtat ccatttgccc atttgccttc
    14821 gatatttcca ttttaaaatc ctttttaaaa tttcctattg ctagttaaaa gcttatatcg
    14881 acaaatttat aaatttatga acacctataa agaaaatttt atttttcaat aataaaaaaa
    14941 taataagcaa aaactgtgcc aaaattttaa aataaatctc aattatctta aaaaatttca
    15001 aatttattaa aaagatctgg attattttct aaaatattac gcaagatcaa atcttctatc
    15061 acgcttttag tgcaatctgt ttgcttaggc caagctctta aataaccctc agcttcacct
    15121 ttagcacttg catctactcc aagtctttct tctttgataa aaatatctct tttagcatct
    15181 atattattta ccacacgcca aacaagcata taagaatttt caagcttatt ttcagcatct
    15241 aaaaacacta aaatcctaaa atgtttttta aattctaaaa gtttgtcaaa actttgttcg
    15301 attttttctt ttttatcaag caaaatacaa actataggac ttttactttc tttataaaat
    15361 tgctttaaat ttaaaagttc taccttagtt ttaaaaagtt ctagtaattt ttcatcttct
    15421 aaaatttcaa gctcttcaac ttgtatttct tcgcaagcat caagtcctgc tttaccccca
    15481 aaacaagaat taggtgaagc atgatctaat tgatcacaaa ttccttctga aattaaaatt
    15541 ttctttgtat taaaacgatc taacatataa ggaattaaag catcataatc tttcaaagaa
    15601 ggtgcatttt tatccacaaa aattgcatgc ttaacaaaac tcatttgccc tactccccaa
    15661 aatgcatgca taatttgttg cgcatgagcg ggatattttg catcgatttt tgctaagata
    15721 agattatgaa agaccccatt ttcaggcata ttataatcaa ttaaatcagg tactgaagtt
    15781 tgaagcaaag gtaaaaaaat tctttcagta ccaagtccca tgatcttatc ttctaaagga
    15841 ggctttccta caaccgttgc ttgataaatc gcatcttttt tagcataaat tttttctact
    15901 ttcatcacag gaaaaagttc agcaggagtg taaaaacccg tatgatctcc aaaaggacct
    15961 tcgattttaa actcttctaa atccacataa ccttcaataa ccacatcact atcataaggt
    16021 ataaaaatac cattttcaca aggagtaatt tttgcaggag tttttttaat aaaaccataa
    16081 agtaaaagtt caaaaattcc cttaggtaaa ggtgcttgag aacaccaaat ataaagcgga
    16141 tctccaccta tggctatact tacaggcatt tttttaaaac cagcattttt gtattcgtga
    16201 taaaaatttg ccccatcttt atgaatttgc caatgcatta aaagttcatt tttatcactc
    16261 atttgcaaac gatacattcc aagattattt tgagttttat ctaaattttg tgtataaact
    16321 tgccccatgg taataaattt acccgcatca tcttcccaag tttttagtat gggaagttct
    16381 tcaagtgagt ttaaaatttc ataatcatac aaggctttat tttttttcag tcttttagga
    16441 ggaatatttt taaaacttaa caaattcata aaaaaatcca tttttgcttt aaaactcgta
    16501 ggaatatgaa gcttggtgag ttttgaaatt tcttcagcca cctcttcata atcacgtcca
    16561 aaagctaaat ttaaagcctt ttcattgcaa aaagtattca tcaaaacagg aaatttatat
    16621 tgtttattta attttttatc tataggattt ttaaataata aagccttccc tttttctcct
    16681 tttttagctt ctatataggc taaatgagcg atttcaagat ctacatctac aggttcttca
    16741 attaccctta aaagatcatt ttcttttaaa atttgaataa attctttcat atcatactct
    16801 cagctttttt taaaagttct ttagcacctt tagcaataaa ctccttagcc aaactctctc
    16861 caaaaccttt aaaatcattc tttttaatca ttctcttatc ttttaaaatt tcacttccat
    16921 cgggtagtcc aagtaccgca cgcacgcaaa tttcatctcc caagagctct gcgttaatac
    16981 ctataggaac ttgacaacct ccttctaaag tagcaataaa ttctctttca atgcttgttt
    17041 caatcaaagc attttcatca tttaaacatt ttaaaagttc taaaattttt tcatcattta
    17101 tgctttctat acctaaagct ccttgagaag ccgcaggaat aagctcatct ttgctaaatt
    17161 cataaacaaa attcacttgc ttatctaagt ttaagcgttt aattcccgcc attgccaaaa
    17221 taatcgcatc aaaatcatta ttttttaatt tctctatacg agaattgaca ttaccacgca
    17281 aagaaataat atctaaatca ggtcttaata ataaaagctg catcttgcgt ctaagactag
    17341 tagtgcctat ttttgcacct tttggcaaag aaagaaaatc tttataattt tgacttagca
    17401 tagcatcatt gctttgctct cttttactta ccgctgccaa aactaaacct tgaggaaaaa
    17461 aactaggcac atcttttaaa ctatgcaccg ctaagtgtgc ttcttttctt aacatacttt
    17521 cttcaagttc ttttgtaaaa agtcctttac caccaatttt tgccaaagga gaatcaagca
    17581 aaacatcgcc ttttgtttta aaaccttcta aaagcacttc aatttgatgt gtatttttta
    17641 aaatttgggc tacatgttca ctttgccaaa gagctaattg actttttctt gttgcaataa
    17701 taagcttcat tttctatcct ctataatttc aacatcaata atttcttcat tagaattttg
    17761 atactcttgc ttggtgtatt gatattttga tttagttatt aatttcaaag caataccaaa
    17821 gaaaaataca aaaattccaa aaacacttgt aataatccct ggaaaaacaa gtaaaaaccc
    17881 tgcgataaca aaagaaaatt gtgttaacat atcctttaag ccacccattt gaaattcaag
    17941 catatttttc caaaaaattc ccaataaaac cgcaccaaaa atcatactca aaagtatgaa
    18001 aaataaaaaa ttaccaaaac caaaaaacac tataaaaagt atacttgcaa taatttcaag
    18061 tacaaataaa gggcttaaac ttaatttata attcataaca ctttcttttt aagaatttcc
    18121 ataagttcat cagtttttat aagttctttt atcaaacctt ctctttggat aagctctatt
    18181 tcattctttt ctaatccttt accaacaact aacgcataag gaaagcccat aagttcaaaa
    18241 tcattcattt taaccccaaa acgctcattt ctatcatcaa gcaatacctc taatccaaga
    18301 ttagttaaat cctcataaag cttattggca aattctaaag ccttttcatc tttgagattt
    18361 gaaacaataa tttcaagcac aaaaggagct aaagttttat tccaaataca tcctttttca
    18421 tcatgacttg cttcagtagc tacagccaac aagcgtgaaa cacctatgcc ataacatccc
    18481 atgtaaaaag gctgactttt gccattttca tctaagaaat ttgcattcat cgctttggaa
    18541 tatttttgtc ctagcttaaa aatatgccct acttctatac ctttactttg ttttaatttt
    18601 gctccacatt taacacagca atccccttct ttaacttcaa tcaaatcttt aaaacgatct
    18661 ttatttaaat ttacaacatc aataccgatt aaatgataat ctttttcatt cgcacctata
    18721 atcatttgct tttcgttttc aagctcaaaa tctatataaa aatctatatc ttttaatccc
    18781 acaaaaccta taaaaccagc tactaagcca gctttttcca attcttcttc gctcgcatcg
    18841 actagttcaa gggcactgca agcattttga gccttaacct cttgcaaatc atcacttcct
    18901 cttataaaaa acacaactaa tttgctttca ttttcataaa tagctttttt taccactgct
    18961 ttaatcgtat aaaaagcatt gattttaaaa aattgtgcta aagaatctat agttttaata
    19021 tttggagtgt gaaatttact tgcataattt gcttcaggac gctcatcttg acaagttttt
    19081 ttagctcttt ttgcagcttc aacattagcc gcataatcac aattttcaca aattaaaata
    19141 tcatcttccc cattttttgc taaaaccata aattccttag agccacttcc accaatagcc
    19201 ccactatcag cttcaactgc tctaaaatca agccccattc tttgtaaaat ttgagaataa
    19261 gttttataca taagctcaaa ctcacgccct aaatcttctt cattagcatg aaaactatat
    19321 ccatctttca ttagaaattc acgacatctt aaaagcccaa atctaggcct tgcttcatca
    19381 cgaaatttaa gtccaatttg atataaatgc aaaggaagtt gtttatagct tgtgattttg
    19441 ttttttacca aagaaagcat agcttcttca tgtgttggac ctaaaacaaa ttcattttct
    19501 tttctgtctt taaaacgcaa aagttctttt ccaaaaacat tgtaacgccc actttcttgc
    19561 cacaaacttg caggagtgat aaaactaaga tttacttctt gtgctccagc cttatccatt
    19621 tcttctttaa ctatattttt aatcttgtct aaaactcttt ttcccaaagg caagaaatta
    19681 taaagtccgc taccaatttg ttctacaaaa cccgcacgcg ttaaaaaaat atgactaggt
    19741 aaactcgcat cttttggcgc ttcttttaaa cttggtgcat aaaatttagt aaatctcatc
    19801 attattctcc atatcaaatt cacatttata ttgatttaaa ccttcaagat tattttgcaa
    19861 atcaaaaaca taacgcatag cattaatcac tgtatcgctt tgcattttac cttgtaaatg
    19921 tttcaaattt acagtaggcg tgtgtaaaaa agccttaaaa acttgatgaa tcaactttct
    19981 agcctcttct ttatcagatt ttttcaaata tccttttttt aacgcaattt caagttgttt
    20041 atctgcatat tctttagctt gcaagcgtat agctttgata ataggcatca aagccaaatc
    20101 gtttaaatac ctaaaaaatt cacttgtttc acgacctatt atcccataag ccatacgagc
    20161 ttcttgttct cttagtgcta aatttttttg aaccacaatt tcaagatcat ctacagcaaa
    20221 aacagatata ttttcatttt cattgatatc aatatccctt ggaactgcaa tatcaaaaaa
    20281 atacctttta taagaaagtt cttctattaa agaatttgta ataatagcat ttggtgcatt
    20341 ggtagctgag aaaaaaaact cgtattgatt taaatatttt tttaaatttt ctaaactatc
    20401 atattcgctt aaaacaccaa gtctctcaca caaatcttta gctttttgta aatcacgatt
    20461 taaaataatc accttagcac ccgcagcaat taaatgtttt gccgcaagtt ctcccatctc
    20521 tccagctcca ataacaacag cttttttttg cgttaaatct gcaagttctt ttgcttttgc
    20581 cacggcaacg ctagctacag aaatagaatt tttagaaatt tgagtttcat tgcgtacctt
    20641 agcagcacat ttaaaagcac tatgtactgc tcttgaaagg tgtactccac aaaaattatt
    20701 ttttacagca aaagcaaagg catcttttaa ttgtcctgct atctgagttt ctccaaccac
    20761 caaactatcc aaagaacttg ctacagaaaa aagatggtgg attgctccac tatcttcaaa
    20821 aatatcagct ttttcaagta aaatatcttt atcaacatca caaagtaaag ccaaagattt
    20881 aacaataaac tccgcacagg ccatttttac aaaagcaaca atttcaacac gattgcaagt
    20941 gcttataacc aaacattctt caatattttc atgagtgcta atgattttta aaaactcact
    21001 ttttttagct tcattggaaa agcttaactt ttcccttaag gcaatatctg tatttttatg
    21061 agtaaaagat atacaataat acattaaaat tccctatcta tcatagcttt aataatatca
    21121 ttaagcttgt tattatcata tttttcaatt gcttttctag ccttttttgc ataagtttta
    21181 gcttctaaaa tagctttttc taaagctttt tgttcttcaa atttagtttt tagccattct
    21241 ttttcatttt catttaaatc ttttttaaat aaagtctgca aatatatcct atcttgttct
    21301 tgtaaatttt cataaagata aatataaggc aaggtagttt taccctcttt aaaatcattc
    21361 atagcaggtt ttccaagaat tttttcatca ctcttaatat ctaaaatatc atcaatcatc
    21421 tgaaaagcaa gtcctaaatt tttaccatat tctgcaaaat ctttttcata taatccagcc
    21481 aaaatagctc cgcatctagc acttgcttca atcaaaacag ctgttttatt atagatcatt
    21541 ttcaaataag cttctttatt gatattaaat ttctctccca aatcaacatc cataagttcg
    21601 cctatagcaa gctttacaac agcatctgaa ataatacttg caaatctagc atccattttg
    21661 cttaattcat aaaaggcttt tgaatacaaa atatcgccca acataagagc attttttgta
    21721 ccaaattcag cattaacaga tcttgctcca cgtcttaatt cactctcatc aataatatca
    21781 tcatgtaata aactagcaag atgtatcaat tctatagctg cacaaatttt aaaagcaatc
    21841 tcactctcat ctgcgatagc taataataat ttagaacgta atttctttcc tgattttaca
    21901 tttgaaagca tatttaaaat aggttcatag ccaagttctt ctaaaaactg ttttattaat
    21961 tcatctattt tttgcactat cttttccttg ttaattgcta ttattatttt ctttacttgt
    22021 taatggtttt acctgaggtt cgttaaaatt aatcatagga acaacctgat tattttgcgg
    22081 tggattttgt aaagcttttt ttctcggatc taaaaattct accattaagc gagattcctt
    22141 atcttctata taaaccgtaa aagttgccaa acctttatta taaccactaa attctaaaat
    22201 aagtcttgct ctatcaatat gtggattagt ataatcaggt attaaagttt gagttaccca
    22261 atctaaattt cttcttaaac tcatcacaaa ttgacgcgga tatttgcgaa atttcgaatg
    22321 tacgatgata ttagtattat caaacaaagt ccaataaaaa tcaaaatttt gcaccttatc
    22381 ttcatagcct atttctttaa tctgcacact agctctctca tcttttttaa gtataaattt
    22441 ataagtataa tcaaaagttg gttcagatgc taaaacatta ctaaaaataa aaaaaataca
    22501 aattaaatag gggcttattt taaacaattt tagccttcgt gtcctaaaat ttttgcgccc
    22561 aattctatat aaatatcatt ttgcctttct tctatgaaat caccattttc taatatgaaa
    22621 ttttttacat ccatttctgt tagaccttgt ttttccaaaa gttccaccat agcaatatga
    22681 tcagcaaaaa attcctcaaa aactttttct aaggctccta aatt
//
LOCUS       DAPIWV010000015        22256 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.016, whole genome shotgun sequence.
ACCESSION   DAPIWV010000015 DAPIWV010000000
VERSION     DAPIWV010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22256
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.016"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..760)
                     /locus_tag="RJ272_000387"
     CDS             complement(<1..760)
                     /locus_tag="RJ272_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7381510.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEI
                     TFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLDFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYYDKKKSNELIRKLSLDFENDTFHQK"
     gene            819..1769
                     /gene="waaF"
                     /locus_tag="RJ272_000388"
     CDS             819..1769
                     /gene="waaF"
                     /locus_tag="RJ272_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDV7381511.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLV
                     HLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI"
     gene            complement(1755..2519)
                     /locus_tag="RJ272_000389"
     CDS             complement(1755..2519)
                     /locus_tag="RJ272_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDV7381512.1"
                     /translation="MKVFIINLERSLDRKEHMKKQIQKLFEKNPSLKNKLEFIFFKAI
                     DAKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDV
                     EFSDEFLIMGQEYIDELLKSKYEYIRLCYLFDKRLYFLSEGGYYLSFEKLAGTQGYVL
                     QVSAAMKFLKYAKNWIYAVDDYMDMFYKHNVLNIVKKPLLLKHDCRIESSISQARRLF
                     LKAKFYRKIIREIFRLYRNILKLSYTFYIKKKLDIS"
     gene            complement(2519..3079)
                     /gene="gmhA"
                     /locus_tag="RJ272_000390"
     CDS             complement(2519..3079)
                     /gene="gmhA"
                     /locus_tag="RJ272_000390"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDV7381513.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSLNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(3076..4461)
                     /gene="rfaE1"
                     /locus_tag="RJ272_000391"
     CDS             complement(3076..4461)
                     /gene="rfaE1"
                     /locus_tag="RJ272_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HDV7381514.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISEILLENELIALFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFNEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGSNLISRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(4454..5407)
                     /gene="rfaD"
                     /locus_tag="RJ272_000392"
     CDS             complement(4454..5407)
                     /gene="rfaD"
                     /locus_tag="RJ272_000392"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDV7381515.1"
                     /translation="MKIAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(5408..5968)
                     /gene="gmhB"
                     /locus_tag="RJ272_000393"
     CDS             complement(5408..5968)
                     /gene="gmhB"
                     /locus_tag="RJ272_000393"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDV7381516.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFIATNQSGIARGYYKESDFFKLCDYMLKEFAKQDIKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNADIGTLILVNE
                     EKKEGDFFRQFKNLKEILNFFKEKDI"
     gene            6050..6352
                     /locus_tag="RJ272_000394"
     CDS             6050..6352
                     /locus_tag="RJ272_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7381517.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(6375..6581)
                     /gene="ccoS"
                     /locus_tag="RJ272_000395"
     CDS             complement(6375..6581)
                     /gene="ccoS"
                     /locus_tag="RJ272_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HDV7381518.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(6578..8935)
                     /locus_tag="RJ272_000396"
     CDS             complement(6578..8935)
                     /locus_tag="RJ272_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HDV7381519.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKIFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            9044..10342
                     /gene="rho"
                     /locus_tag="RJ272_000397"
     CDS             9044..10342
                     /gene="rho"
                     /locus_tag="RJ272_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDV7381520.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            10346..11881
                     /locus_tag="RJ272_000398"
     CDS             10346..11881
                     /locus_tag="RJ272_000398"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDV7381521.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKTFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENMTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFNLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGNPQIQ
                     NID"
     gene            11961..13862
                     /locus_tag="RJ272_000399"
     CDS             11961..13862
                     /locus_tag="RJ272_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HDV7381522.1"
                     /translation="MQRRDFLNGMALAVVAGMTPLQLLYGKDSKIEDFTKEYYPPNLL
                     GLRGSNNKSYKYAHMLRDGDKFGFSSIKPKENYDLVIVGAGISGLAAACFYQQKFGEN
                     KKILILDNHDDFGGHARRNEIQLDEGTILSYGGSESFQSPKALYSKEVIELLKSLGVS
                     IDELAKRFDVNFYPDLKLSRGVYFSKENFGVDKVVNGNPRKVICDDIPDSKNNGKSIE
                     NFIKDFPMTSKDKRELISLFKSNKDYLKGLSKEEKEEYMAKTSYKKFLEEKVKLSQKA
                     ITFFEGMTDDFLALGIDAISCEDARISFLPGFDKLGLDPIEGEALAEMEEPYIYHCAD
                     GNATVARLMVRKLIPTVSQKGKDMDDITLAHFDYSKLDDSNNKVRLRLNSTVIHVENT
                     KNGTLISYINQGKKYRIKAKNVVMANYNNMIPYIIPSLPKEQKEALSKNVKTSLLHTK
                     VIISNWEPFIKLGVHEIYSPKMPYARTKLDYPVDMGGYHHPRDPKKPICIHMVCSPLA
                     LANIQGIDLEGLDARDRARVGRNLLFTMSFEEHEKIIRGQLQGMLGTAGFNHEKDILA
                     IVVNRWGHCYSYTENSLYDDPKIAEQTRLIARKPFGNIVIANSDSDWSAYMHSAIDQA
                     YRAINEIKA"
     gene            complement(13852..15957)
                     /gene="copA"
                     /locus_tag="RJ272_000400"
     CDS             complement(13852..15957)
                     /gene="copA"
                     /locus_tag="RJ272_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HDV7381523.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQKKRKDIIAKIKNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDIYLAGSAKFLHENEIDTKESDIFFDTFKEYIR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFEKTLFVGDGINDAAALSAASVSISFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFIALSPHIAALAM
                     CFSSVTVVFNSLRLRKSKP"
     gene            complement(15957..16151)
                     /locus_tag="RJ272_000401"
     CDS             complement(15957..16151)
                     /locus_tag="RJ272_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HDV7381524.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(16141..17091)
                     /gene="czcD"
                     /locus_tag="RJ272_000402"
     CDS             complement(16141..17091)
                     /gene="czcD"
                     /locus_tag="RJ272_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HDV7381525.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(17167..17430)
                     /locus_tag="RJ272_000403"
     CDS             complement(17167..17430)
                     /locus_tag="RJ272_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HDV7381526.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(17500..17994)
                     /locus_tag="RJ272_000404"
     CDS             complement(17500..17994)
                     /locus_tag="RJ272_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDV7381527.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(17991..18767)
                     /locus_tag="RJ272_000405"
     CDS             complement(17991..18767)
                     /locus_tag="RJ272_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HDV7381528.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            18834..19760
                     /locus_tag="RJ272_000406"
     CDS             18834..19760
                     /locus_tag="RJ272_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDV7381529.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(19757..20359)
                     /locus_tag="RJ272_000407"
     CDS             complement(19757..20359)
                     /locus_tag="RJ272_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7381530.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSALGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(20440..20667)
                     /locus_tag="RJ272_000408"
     CDS             complement(20440..20667)
                     /locus_tag="RJ272_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381531.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(20678..22108)
                     /locus_tag="RJ272_000409"
     CDS             complement(20678..22108)
                     /locus_tag="RJ272_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HDV7381532.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRTSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLIIFNVAHMTDFALPLPGINLPIGPSGALVNVLQDGVYNLGNLTLANIHFENYNA
                     FGTNFNYFVSLGYSNGTNAHTLSAIPAVQSQLEFNEKDGYAVHVGGRYDFTKTLKVGY
                     EFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQNIWGN
                     RGLPFGGAKKDKARADNIMLMYNVKF"
BASE COUNT         8042 a         4002 c         2931 g         7281 t
ORIGIN      
        1 gcttttgatg aaaggtatca ttttcaaagt ctaaagaaag ctttcttata agttcattac
       61 ttttcttttt atcataataa ttttgattta aaatttcttt atttttattc tcatatcttc
      121 catttggatt aaattcataa tgataaatgc aagttttaaa aacagctatt ttctcacaaa
      181 acataaaata aacataacaa aaaagcacat cttcgccata acttaaacgc tcatctattt
      241 taattttctc aaaacttttt aagatgatat cttttctaaa gcacttcgcc caaaccgacc
      301 agcaaaaatg cctttgttta cttaaaaaat ctaaaaattc cttttgatta aaaacttcat
      361 cttgtttaaa acgataaaat tgtttggttt ttactctatg cacaaaggca tcaaaacaaa
      421 gcaaatcaaa accttttttc atctctttaa atgttatttc acaagcatcg agtgttaaaa
      481 aatcatcact atctaaaaac attataaaat cagaactaga atgcaaaacc cccaaatttc
      541 tacttgcaaa agtgcctaaa ttttcttcat tttgaaagat ttttatcctt ggatcttttt
      601 tggcaaattc taaaaccata tttaaactat tatctttact tttatcatcg ataatcaaaa
      661 tttcaatatc ttttaaagtc tgatttatac aactttgtaa agctcttgag ataaaatcgc
      721 aagaattaaa aagcgggatt atgatagaaa gttgtggcat atttttccta aattttgtta
      781 aaataataaa aacaattcta tcaaagttta ggaaatttat gaaaattttt atacaccttc
      841 ccacttggct aggcgatgcg gtgatggctt cacctgcttt atacgttata aaagaacatt
      901 ttaaaaatgc ccaatttatc ctttatggat ctttggtttc cacagcactt tttaaagaat
      961 ttcctaattc taaaatcatc atagaaaata aacaatcccg ctacaaacaa gccctatctt
     1021 tacgcaaaga acttggtaag atcgatttta gctttgcttt tagatctgcg ttttcttcta
     1081 agattatctt acatattctt aaaacaaaac aaagatattt ttttgacaaa aacaagcaca
     1141 aagaagaaca tcaagtttta aaataccttt attttataga aaactcactt cacataaaag
     1201 ctcaccttaa agacttaaaa cttcccttta agctaaaatt tcaaagccct cttgtcttaa
     1261 aaaatggcaa aaaaattcta ggactcaatc ctggtgcaag ctttggaagt gcaaaaagat
     1321 gggatgcgag ttattttgct aaagtggctt taaatttcag ccaaagtcat gagattttaa
     1381 tctttggcgc aggaaaagcc gaacaagaac tttgtaatga aatttatcaa attttaaaag
     1441 aacaaaacat aaaagtaaaa aatctttgca ataaaactac catcaaaacc ctttgtcaaa
     1501 atatcgcttt ttgcgatctt ttcatcacaa atgacagtgg ccctatgcac ataagtgcag
     1561 tttataaggt aaaaaccgtg gctatttttg gccctacaaa atttactcaa acctcacctt
     1621 ggcaaaatga aaacgcaaca ttagtgcatt taaatctagc ttgtatgcct tgtatgcaaa
     1681 aaacctgccc tttaaaacac cacaaatgca tgaaagattt aaagcctgaa gtgattgtaa
     1741 aagcgattca aaatttaact aatatctaat tttttcttaa tgtaaaaagt ataagatagt
     1801 tttaaaatat ttctataaag tctaaaaatt tctctaataa tttttctgta aaatttagct
     1861 ttcaaaaata aacgtctagc ttgagaaatt gaactttcta ttctacaatc atgttttaat
     1921 aataaaggct ttttaactat atttaacaca ttatgtttat aaaacatatc catataatca
     1981 tctacggcat agatccaatt tttagcatat ttaagaaatt tcattgcagc acttacttgc
     2041 agtacataac cttgagttcc agcaagcttt tcaaaactta aataatatcc accctcgctc
     2101 aaaaaataca atcttttatc gaacaaataa caaagtctta tatattcata tttgctcttt
     2161 aatagctcat ctatatattc ttgccccatt attaaaaatt catcgctaaa ttccacatca
     2221 tcttctagga tgattatagg ctcatcaagc ttcacacatt cttgccaaag tttataatga
     2281 ctagcaaaac aagctttttc tccatcagaa agctctctgc ccagcaccca agaaccccac
     2341 caaggaaaat gatctttaaa ttccaaatgt tctttatttt tagcatcaat agctttaaag
     2401 aaaataaatt ctaatttatt ttttaaacta ggattttttt caaaaagctt ttgaatttgt
     2461 tttttcatat gctcttttct atctaaagaa cgctctaaat ttatgataaa aactttcatt
     2521 aaaaaccctc atcgatgatc tgacaaagcg tgtgtatgat taaaatgtgc atttcttgaa
     2581 ttctagccgt atcatcgctt ggcacaacaa gattatgatc acaaagctta ttcatcattc
     2641 caccgccctt tccactaagc cctaaacaaa gcatattaag ttcttttgct tttttaaaag
     2701 cttctaaaac attgagactt tttccactgg ttgaaatgcc gattaaaaca tcattttcat
     2761 ttcctaaagc ctccacttgt cttgaaaaaa caaactcaaa accatagtca tttcctatag
     2821 cactaagcgc tgaagtatcg gttgtaagcg ctatacctgc taaagccttg cgttcttttt
     2881 tataacgccc actaagttca gctgcaaaat gctgtgcatc agctgcactt ccaccatttc
     2941 cgcaaattaa aattttacca ccttttttaa gacattcaca taaaagctcg cctattttag
     3001 cgatttgtcc ttttaaaatt tcactttctt gaacgatttt ttgatgttct tgccattctt
     3061 tttctactaa atttatcatt ttttatcctt aatcttttct ataatcttac tcgtactaaa
     3121 tccttcttca aaatcgatta attcaactct tgaaatcaaa tttgaaccta caacaagctt
     3181 atctttataa tcagctcctt taaccaaaat atcaggcttt aaaaagctta taagttctaa
     3241 aggtgtgtct tcatcaaaaa tcactacaaa atctacaaaa taaaaagctg ccaacataca
     3301 agctctttga aactctgaat ttacaggacg actctcacct ttgagtcttt tcacactcgc
     3361 atctgagttc aaacctacaa tcaaaacatc gcccaatctt ttagctttct caagatattt
     3421 tatatgtcca aaatgcacga tatcaaaaca accatttgta aaaacaatct ttttatcatt
     3481 ttgttttaaa agcgttaaaa gctcttcttt atttttgatc tttttctcaa aactcatact
     3541 tttaaaactt ctaatctcat caaaactcac actcacacta cctattttac ttactacaac
     3601 ggctgcagct tcattggcaa gttcacaagc tttaaaaatt tcaatttcat ttgccaaaca
     3661 aaaagccaaa acggcaatca cactatcgcc cgctcctgtt acatcataaa cttctaaggc
     3721 tttagcaggt gcgattttta aaccctcatt aaaaagcgca atccccgctt ctgaaagagt
     3781 gatgatagaa taacgcaaag aaaaatcttc ttttaatttt ttaatccctt tttctaaatt
     3841 ttcaccctct aaattttcaa atttcaaagc ttctaaagct tcttttttat taggcgtgag
     3901 caaggttgca ccgctatatt tactaaaatc actcccttta ggatcaacta aaacagggat
     3961 atttaaagcc ttagcctttt ttatcacagc cttacaaacc ttaggcgtta aaataccctt
     4021 agcataatcg cttaaaacca cagctttaaa atctttaatc ttttcatcaa acaaagcaat
     4081 aagctcattt tcaagcaaaa tctcacttat gtcttcttca tctagtctta aaacctgctg
     4141 attgtgcgcc ataatgcgat ttttaaaagg ggttttgcgt cctttttgga tcaaaaattc
     4201 tccttttaaa ttttcttgta aaaatttccc actcttatca tcacccacaa caccaagcgc
     4261 aaaaacatca gcccctaaac tttttaaatt tgcataaaca ttcgcagccc cgcctaatct
     4321 tttatcttcc ttaagagttt tagctaccaa aacaggggct tcaggactga tacgcgaaca
     4381 atcacaccaa gtgtaattat ccaccataaa atcccctata attaaaattt taggtttttg
     4441 ctggcttaaa aactcaagca tttacttcct tttcaaaaag tctttttatc tcatctaaat
     4501 aatctttaat cccctcttca agactaaatt ttggctgata atcccaagtt tgatctagtt
     4561 ttgcttcagt atggaattga taagatttta cataaggatt tgggatatat tcacaaggca
     4621 aatcagtctt taactctttt tgcaaaatat caactatatc ttgaaaggtt cttgctttac
     4681 cactgcctac attataaacc ccacattttg aatcaagggc gattaaatta gcactaataa
     4741 catctttaat ataagtaaaa tccctataaa tttgatcact tccttcaaac aatcgtggat
     4801 tttttcctgc taaaatttga tggccaaatt gcaaaaccat agaagcggtt ttgtttttat
     4861 aaaattcgcc ttttccataa acattaaaat atctaagtcc taccaaatga gctttatcgt
     4921 aatatttttt cgctaactta tccatcatca attttgaaaa agcataagga ttttttggtt
     4981 cttcatcctt acctacagtt tgtggacttt ttgcatcacc ataaaccgaa gctgaacttg
     5041 cataaataag ctttgcatta agatctatgc taagttctat aaaatcttta aaagtattta
     5101 aattggtttg caaaacctta gtttgatcaa aaaccgtagt gtctgaaatt gctgcttgat
     5161 gaaaaataat ctctggttta aaatcttcaa tcttttttaa aactttttca tcgttaatat
     5221 cgcctgcaaa aagttctcca tcaaattcaa gtaaattttt aaaatgccca aaactttgca
     5281 aatttccatt ttcaaaagtc gcactactac gcattttatc gatgattaaa atttcatgtt
     5341 tttcttgcaa atttaaagct agttgcgaac ctataaatcc tgctccacct gtgattgcta
     5401 ttttcattta aatatccttt tccttaaaaa agttcaaaat ttcttttaaa tttttaaatt
     5461 gtctaaaaaa atcaccttct tttttttctt cattcactaa aatcaaagtg ccaatatcag
     5521 catttaatcc tgcttgcata tcacttagat tatctccgat aaagatagaa tttttcatat
     5581 ctaaatcaaa ctcatctttt gcttttaaaa gcatgcctgc tttaggtttg cgacactcac
     5641 aaccttctaa atgcggacaa tgataaattt tatcaatttt tatatcttgt ttagcaaatt
     5701 ctttaagcat ataatcacaa agcttaaaaa aatcactttc cttgtaatat cctcttgcaa
     5761 tgcctgattg gtttgtcgct ataaaaagca aataatttct agccaaaaaa tatctacaaa
     5821 gttcaaaaat tccatcacaa aattcgaaat cttctatttt ataaacatat tttttatcta
     5881 tattaatcac accgtctcta tctaaaaata atgcttttgt tttcataaaa acattataat
     5941 atagcttttt taaaaagaaa ataaacatta tctttaattt cttaagattt ttattaaaaa
     6001 taaagatata taatacctag caatctaatt tttactaagg agaaaacaaa tgaaaaaatt
     6061 attagtagtt tctgctttgg catgtcttgg tgtttctgct tttgctgcag atggtgctac
     6121 actttttaaa aaatgcgcag tatgccatgg tgcaaatgct gacaaagttt acttaaacaa
     6181 agttccagct ttaaaaactc tttcttctgc tgaaagactt caatacatga aagaatattc
     6241 agaaggtaaa agaaatgctt atggtcaagg tgcgatcatg aaacttaacc ttaaaggttt
     6301 aactgaagaa gattttaaag ctatcgaagc tcatattgaa actttaaaat aatttctaaa
     6361 aaaggctttt ctttttaaga aagccttttt ttatccaaag cttctttttt acgtctttct
     6421 aattctatag catcacgtaa agaatcctca tcatcattta aagtagtaaa tttataatca
     6481 tcatcaaatt gcttattttt aatcccccaa agcaaagttg ccaaaatgat aaaaaacgct
     6541 aagatagaaa ctcctatcat catcatgatt atactattca ttctttaatc cttaaagcat
     6601 ttaaaacgac tattatacta ctaaaagaca tagaaatagc agcaaataaa ggatttatca
     6661 tacccaaaaa agccaaaggt atggtgcaag cattataaaa caaagaaaaa gcaagatttt
     6721 gcttgataat tttaaaggtg tttttagata atttgatggc tttttttaaa gaaagcaagt
     6781 catttttcaa aagcaaaaca tcactacttt ctatagctag atcacttcct tctcttaaag
     6841 tcattgaaac acttgcgtat tttaaagcta gtgcatcatt taccccatca cctacaaata
     6901 aaactttgta atttttactt aaattttcta tagttttcat cttatcttca ggcaaacaag
     6961 aagcttgata attttgaatt tctaactttt tagcgatttt ttccactgct ttttgatgat
     7021 cgccactgag tatcattaat tctttctttt cttttttaag ataagcgata agctcttttg
     7081 caccttctct taaaacacta tcaaactcaa aaaaagctaa aattttacct tccttggcaa
     7141 aaataaaatg cgtattatca aattctttag ccacaatacc cttttcttgc aaaaatttag
     7201 aacttccgcc taaaagcaac ccttcattta actcagcact taaaccttta gcttgaatac
     7261 tcgaatgctt tttaaaatcc aaatttaaat ccttagctcc tttttgcttt aaatataaca
     7321 caatattttg agagatagga tgtttagaaa gttttacaaa attataaagc tcgtttaaat
     7381 caagcgcttt atctaaaaaa acctctttaa gttcaagctc tattttggtt aaaatacccg
     7441 ttttatcaaa caccacacaa tcacatttgc ttaaatcttc tatcacgcta gaacttttaa
     7501 ataaaatatg cttttttaaa gccctaccta aagccacaag attgctcact ggcgttgcta
     7561 aagccaaagc acaaggacaa gcgataatca aaactgcaat cgcattgact aaagaaattt
     7621 cgaaactctc ttctttataa aaaaaccaaa aagcaaaaca aataaaagcg atcaataaaa
     7681 ccgttctaga aaaataagcc aaaagactat tgaccaaact ttcaagtttt gcttttttag
     7741 aacttgcaag ttctaaaagc tggataattt gactgagttt tgaatccttg taaagctttg
     7801 ttgcttcata ctccacactt ccatcaagca ctatacaagc tgaaaaaatt tcatcttctt
     7861 tttgtatgag ttttggggta ttttctccat ttaaagaaga agtatctacg ctcatttcac
     7921 cacttttaca aatcccatcg attaaaattt tatctccagt tttaagcaaa attctatccc
     7981 ccaaacaaac cttttgcact tctttagaga caaattcttt accattgaaa actaaaactt
     8041 cattttgcaa aaaatcatta agcccatcta tagtatctaa agcacgcttt ttgctaaaca
     8101 tctcaagata tttacctata aaaacaaagc aaattatcat cgccacagag tcaaaataca
     8161 cctcccctac cctaaaaaac atggcccata aagaataaac ataagccaaa ctcgctccgc
     8221 taatcaccaa tacatccata tttaaactat gcatttttaa agttttaaaa gcacttttat
     8281 aaaaatgaga tcccgtataa aaaagcacag gagaacaaag gataaattca gcaaaattta
     8341 aaatatcctt agtgtcctta tccataccgc taaaaaatcc tgcgtatttt gccactgcta
     8401 tccacatgat attcatcaca caagctatag ccacaacaag cttagaataa aattcccttt
     8461 ttagtaaatc cgcttttttt gaagccttgc tcgcatcata agcactcgct ttatagccta
     8521 tgctttcaat aagtcttaaa atttgcacca aagaaatgct ttgctcatca aaaacaatgc
     8581 gtgctttatg gtttaaatga ttaatatcaa gttctaaaat tccttcttgt ttggttaaaa
     8641 ttttctcatt aagccacaca caagctgcac attctatacc gtgtatcatg agataaattt
     8701 cactaaatcc ttctttggtt ttagtgataa actcatcata atttttcatt tcattttgaa
     8761 aatttacagg gcttaaagtt tgatttccaa gcttttcata aaactcatct aatccacttt
     8821 catgcaaaat ttcccaaacg ctctcacaac ctttacaaca aaaaatttta cccttatact
     8881 ctatcatttg ggcttgttta taatcaagtt tgcaatgttc acatttcata atcattcttt
     8941 aaaaaaatat tttttataat tataaacaaa tttgacaaaa agtgcatttt tttattaaaa
     9001 tcacatttta caaaaattat tctgctaaat cttacgagga cttatggaaa aagaaaaaaa
     9061 acaacatcaa agaacccacg ttccagtgga aggttataaa atcgaagaat taaaattatt
     9121 agatttagaa aatctagtta aaatcgctaa tgaatgtgaa atcgaaaacc caagagaatt
     9181 tcgccgccaa gaacttattt ttgaaatttt aaaagcacaa acaaaaaaag gcggttttat
     9241 actttttaca gggattttag aaatttcttc cgaaggttat ggctttttaa gaggtatgga
     9301 ctctaatctt agtgatagcg ttaatgacgc ttatgtttca aattcacaaa ttaaaaaatt
     9361 tgctctgcgt gtaggcgata tcgttacagg acaagttaga gaaccaaaag atcaagaaaa
     9421 atactacgct cttttaaaaa tcgaagcgat caattatctg cctttacaag aagccaaaga
     9481 aagacctttg tttgataact taacccctat ttttccaaca gaaaaaatca aactcgaata
     9541 cgatgcgatg aagcttacag gtcgtgtttt ggatcttttt actcctatag gaaaaggaca
     9601 acgcgggctt atcgttgctc caccacgcac aggtaaaaca gagcttatga aagaacttgc
     9661 tactgctatt gcaaaaaacc acccagaaat gcatttaatc gtacttttag tcgatgaaag
     9721 gcctgaagaa gttaccgata tgcaaagatg tgtaaaaggc gaagttttta gttctacttt
     9781 tgatttacct gcttataatc atgtgcgtgt agctgaactc gtgatagaaa aagccaaaag
     9841 aatggtagaa acaggcaaag atgttatcat cttgcttgat agtatcacaa gactggcacg
     9901 tgcttataac accgcaactc caagcagcgg aaaagtccta agcggcgggg tggatgctaa
     9961 tgccctacac aaaccaaaac gcttctttgg tgcagctaga aatatagaaa atggaggctc
    10021 tttaactata gttgctacag ctttaattga tacaggttca agaatggatg atgtgatttt
    10081 tgaagaattt aaaggcacag gaaatagcga aatagttctt gatagaaata tcgccgatag
    10141 aagaatttat cctgcgatta atatcatcaa atcaggaaca agaaaagaag aattactcca
    10201 aggcgtagca aatcttcaaa aaatttgggc gatccgttca gcgatttctc aaatggatga
    10261 tgttgaagcg ttgaaatttt tatattctaa aatgcttaaa accaaagaca atgtagaact
    10321 tttatctata atgaacgagt aaaaaatgct tcaagcttta gcgattaaat acagaccaaa
    10381 aacttttgat gaacttatag gacaaaagac agttagcgta agtttaaaat acgccctaaa
    10441 tcataatcgc ttagctcatg cttatctttt ttcaggactt agaggaagtg gaaaaacttc
    10501 aagtgctaga attttttctc gtgctttagt ttgcgaacaa ggaccaagtg atactccatg
    10561 tggcacttgc aaacactgtc ttgcagcact tgaaggcaaa catatagaca ttatagaaat
    10621 ggatgctgca agcaaccgtg ggcttgaaga tatacaagcc ttaatcgaac aaaccaaata
    10681 caccccttct atggcaagat ttaaaatttt catcattgat gaagtacata tgcttacccc
    10741 acaggctgca aatgcgcttt taaaaacctt agaagaaccc ccaagttatg ttaaatttat
    10801 acttgcaacc acagatcctt taaaacttcc agctactgtg ctttcaagaa cacaacattt
    10861 tcgctttaaa caaattccac agagtgaaat tttaaatcat cttaaagaaa ttttacttaa
    10921 agaaaatgtt aaatttgaag aagaagcttt aaaatttata gcaagaagcg gcaatggatc
    10981 tttaagagat actttaacct tgcttgacca agctattatt ttttgtcaaa atgaaatcag
    11041 cattagtaaa attacagata tgttaggctt tttagatcct caaaaaatca aaacctttta
    11101 tcaggctatc ttaacaaaag acaaggaaaa agtttttgcg tatttagagg aattacaaga
    11161 ctatgaagcc tcaagcgtga ttgatgaaat gcttttttat ttaaaagaaa gtttttttgc
    11221 aaaaagtaca gaattttcta ctttaattta tgaaagattt ttccgtattt tatcaaaagc
    11281 taagaatatg ctttgcgatg atgatggctt tacgctttgt gttatggctt ttatgatgat
    11341 ggaagcaagt catttaaaag aaattgacgc acaaatccaa gaaatcaaac aagaaaatat
    11401 gacaaatatt acacctagga tcacacctgc tcctatcata cctaatcttg agaaaaaaat
    11461 agaaaaaaat gcttatgaaa tcttgcttga tagtatttat gatagggatt ttaatcttgc
    11521 agaatgcttt aaacaaagca caaaatttat tagttttgaa aacaatactt taaatataag
    11581 ctcaaacgca caaggacaaa atcgcgatac actcaataaa ggttttaaac tcatacaaga
    11641 actttttaaa gctaaatttg gggaaaatgc aaaaattaat gtgcaaaaag cactaacaat
    11701 tgatgaaaat aagcttcaat ccttaactca agaattacca aacaatgaaa ataaaaacat
    11761 agatattcaa agttctatta atatgcttaa agaaggggcc aaaaaatttg acccacaaga
    11821 agatcttaaa gaggctctta aagattgctt tggcaatcct caaatccaaa atatagatta
    11881 agatattgct taataataat aatataagta atctttagct acaatatttt tttataaatt
    11941 atttagaaag aagaataaaa atgcaaagaa gagactttct taatggcatg gccttagctg
    12001 tcgttgcagg catgacaccc ttacaattac tctatggaaa agatagtaaa attgaagact
    12061 ttacaaaaga atactatcct cccaatctac ttggattaag aggtagtaat aataaaagct
    12121 ataaatacgc tcacatgtta agagatggag ataaatttgg ttttagcagt ataaaaccta
    12181 aagaaaatta tgatttagta atcgttggag ctggaatcag tggactagct gcagcttgtt
    12241 tttatcaaca aaaatttggg gaaaataaaa aaattttaat tcttgacaat catgatgatt
    12301 ttggaggaca tgctagacgc aatgaaatac aacttgatga aggaaccatt ttaagttacg
    12361 gaggaagtga aagttttcaa tccccaaaag cactttattc taaagaagta atcgaactct
    12421 taaaatcact tggagtcagt atagatgaat tagcaaaacg atttgatgta aatttttacc
    12481 cagatttaaa attaagcaga ggggtatatt tttcaaaaga aaattttggt gttgataaag
    12541 ttgtcaatgg aaatcctaga aaagttattt gtgatgatat cccagattct aaaaataatg
    12601 gaaaaagtat tgaaaatttt attaaagatt ttcctatgac ttctaaagat aaaagagagt
    12661 taatatccct ttttaaaagc aataaagact atctcaaagg tttaagcaaa gaggaaaaag
    12721 aagaatatat ggctaaaaca agttataaaa aattcttaga agaaaaagta aaattatccc
    12781 aaaaagctat aacatttttc gagggaatga cggatgattt tttagcttta ggtatagatg
    12841 caatctcttg tgaggatgca agaatttctt ttttacctgg gtttgataaa ttaggacttg
    12901 atcctatcga aggagaagct ttggccgaaa tggaagaacc ttacatttat cattgcgccg
    12961 atggaaatgc tacagtagca agattaatgg taagaaagct gattcctaca gtgtcacaaa
    13021 aaggtaaaga tatggacgat atcaccttag ctcattttga ctactcaaaa cttgatgact
    13081 ctaataataa agttcgttta cgattaaata gtactgttat tcatgtagaa aatacaaaaa
    13141 atggaacctt aataagctat atcaatcaag gaaaaaaata tagaattaaa gcaaaaaatg
    13201 ttgtaatggc taattataac aatatgattc cttatattat ccctagttta cctaaagaac
    13261 aaaaagaagc cttaagtaaa aatgtaaaaa catctctact tcacaccaaa gtaattataa
    13321 gcaattggga accatttatt aaactagggg ttcatgaaat ttattcacca aaaatgcctt
    13381 acgctagaac aaaacttgat tatccggttg atatgggtgg ctatcatcat ccaagagatc
    13441 caaaaaaacc tatatgtatt catatggttt gctctccttt agctctagcc aatattcaag
    13501 gtattgatct tgaagggctt gatgcaagag atagagccag agtaggtaga aatctattgt
    13561 ttaccatgag ttttgaagaa catgaaaaaa tcattagggg gcagcttcaa ggaatgttgg
    13621 gaactgcagg ttttaaccac gaaaaagata tattagcaat tgttgtaaat cgctggggac
    13681 attgttactc ctatacagaa aatagtcttt atgatgatcc taaaattgca gagcaaacca
    13741 ggcttatagc tagaaaacct tttggcaata ttgttatagc taattcagat tcagattggt
    13801 cagcttatat gcattcagct atcgaccaag cttatcgcgc tattaatgag atcaaggctt
    13861 agattttcta agccttaaag aattaaacac tacagtaaca gaactaaaac acattgcaag
    13921 tgctgctata tgaggactta aagcgataaa aggtacaaat cctgctgcga tgggaatgca
    13981 aagtacatta taaataaaag cccaaaaaag atttagctta ataatactgc gtgttttttt
    14041 agcaagctta aagcatttaa aaatagctga taaatcatct tttatcaaga taaaatcccc
    14101 tgtttttttt gcaagttcat ttgcctttga aaaacttata ctcacacttg cagcagataa
    14161 agctgccgca tcattgatcc catctcctac aaaaagagtt ttttcaaatt tttgaatgat
    14221 ttgtagtttt tcttcactct taagctgagc gtgaaattcg tctatttgta attctttggc
    14281 tattttttct acatttttta catgatcgcc gcttaaaata aaagttttaa gattttgctt
    14341 ttttaaattt aacacaagct ctttggctcc atcttttaaa gcattgctta acaaaacacc
    14401 gcctaaacac tttttattct tagcaaaata caccctaata tattctttaa aagtatcaaa
    14461 aaagatatca ctttcttttg tgtcaatttc attttcgtgc aaaaacttcg cactacctgc
    14521 gagataaata tcattatctt ctttgtattt tataccagaa cccacaatca ctcttccctc
    14581 accctttaaa tcaaaaaaat gatctttatg taaagcctta gctataggat gagagcttaa
    14641 actttcaatt tgacataatt tatcaaaatc atctttagaa agattgtgtt taaaaatact
    14701 caaattttcc tttgttaatg tacccgtttt atcaaaaaaa gcatacttaa ctaaggctaa
    14761 tttttctaaa gcagcaggat ttttaataag aatgaaattt tttgccgcat ttgcacttgc
    14821 cacaaccaaa gctataggcg ttgcaagacc taaagcacaa ggacaagaga tcaaaagcac
    14881 agcacaagag tgtaaaaaag ctgtatttaa atctgctttt agcacccaaa aaacaaaaac
    14941 taaaaaagca aaaaatatta taccccctac aaagtattta gaaatttgat ctgctaaatt
    15001 tgccaaagga cttttgatac ttcctgcttc aaaaactaga tttttgattt gttctaaagt
    15061 actatccatg gcctttttgt ttgctttgat ccttaaagca ccatttaaaa ctactgctcc
    15121 tgcttgaact tcatcgcctt ctttttttaa aacaggcaaa aactccccat ttaaaaaact
    15181 catatcaagc tctgcactcc ctaaaagcac tactccatct gcaacaatgc tttctccttc
    15241 ttttaccaaa agtacatcgc cacttttaac aaaagaactt gaaatttctt tgatactttc
    15301 atcttcaagc aaaatttttg tcttttttgt gtctatattt tctaaaattc tttgataatc
    15361 ttgtgcctta aatttagcct tactttcaag atattttcct aaaagcacaa aggaaataat
    15421 catcattgca ccactaaaat acaaatcttc ttctttaaaa atttgcaaat acaccaaaaa
    15481 agaatacaca aaagcactca aagtccccaa agctacaagg gtattcatat ctaaattttt
    15541 gcttttaaag cctaaaaaag catgagaaaa aaagtctctc ccacaataaa atatcccaaa
    15601 aaaactcaaa gccatttgga tattttgaga aaaagaactt ttaacaaaca tttcaaaata
    15661 cataataatc acactcaaaa ctatacttaa gagcaaattt tttcttaatt ctaagtgttt
    15721 ttttgccttg tatgcgttca agctttgttc atcttctaaa atttcaaagc ctaaattttt
    15781 aatttttgcg atgatatcct tgcgtttttt ttgatcttca agtaaaaaaa ccccgctaga
    15841 attcacataa gaaacactag catctttaac accatcaatt tttttacaag ctctttctat
    15901 agcattagaa caattaacgc aagtcatttt gcctattttt atacgcaatt cttccattat
    15961 aaacgctcta caatctcaaa acctaaatct tgaaattctt ttgtaaaatt tgatacttga
    16021 ttttcttcta aatttaaact taaaattttt tgctccaaat ccacttctat atttccaaat
    16081 tcatcttcaa gagaattttt gatcaaattt acacaattca tgcaattaac attttttact
    16141 ttaaatttca ttttcactcc ttataggttg tatggtaata tgcccgattt caaattcatg
    16201 caacaactta tgagataaat cctgagatag tttttcaaat tcctttagat tgcaaactct
    16261 tacttttaaa tgcatagagg ctactagcat tttattagtg atttgagtaa tatgcaaatc
    16321 cactacctca tccacactag gatttaaaag caaaacttgt cttacttttt ctatatccac
    16381 aggagaactt tcaagcaaga cattagcact ttgtttaagc aagataatcg cccatcttaa
    16441 aagcaagatt gataatacaa tagctaaaat cgtatctata taaacaatat cactaaaata
    16501 caccacaatc ccacctataa taaccgctaa agaacccaat aaatcgctca tcatatgcaa
    16561 aaaagcggac ttcatattga cattttctaa atttgcaccc ttaaacatca tcaaagcatt
    16621 aatcccattt accaaaaagc ccaaaatagc tacaattatc atggttttag cgtcaatttc
    16681 ttttggattg ataaattttt ctatagcctc ataaatgata aataaagccg ataaaataat
    16741 ggttaaagca ttgataaaag ccactaaaac ttcaagacga aaatacccaa aggtcttttg
    16801 atgatcttgc catttttcta cagctataat ggctaaaaaa ctaagagcta aggcaaaaac
    16861 atcagaaaac atatgcaaag tatcgcttaa aagtgccaaa gaatttgaaa ggattgaata
    16921 aataaattgc acaagcatca tagaaaaagt cattaaaaga gaaattttta aaatcttttt
    16981 atccacactc cttgcatcgg catgggaatg atgatgttca tgagaatgtt cttcgtgatt
    17041 atgatgacaa gatttgttag ctaaaggctc gtgtgataaa aatttataca tcttatatcc
    17101 ttttttgctt gacattttaa gatattaagc taaaaaggat ataaatattt gttattttta
    17161 taaaaattaa aagtcaaaaa gctcgcctag ccaactttct ttctttttct ttttataata
    17221 gtcattgtgc tgatgataag ctgagtcatt atatcttgac tcttgtcttg gagcttggtt
    17281 aaaatttgct gtattaggga cactgcgttc tatgattttg tcaagctctc cacgatcaag
    17341 ccaaacgcca cgacactttg gacaataatc aatctcaact ccactcctat cactcataac
    17401 caaatctaca ttacaaactg gacataacat acaatacctt tttttaaatt tttgacttaa
    17461 aattataaaa agaaatatta aacaaattta caacaagttt taatgttttt ttgcatgtct
    17521 agtcatcata aaactttgtt caaaaaatat aagcaaggta acactcactc ctatagctag
    17581 agccaaagtc acagaaacag ttgtaaaaaa ataatcaaaa aattgaacta aaaattcaga
    17641 cttagccttc aaatcatcac tgcgtataaa agaaataaga tacaaaatcg ctttataagc
    17701 ataaattcca ggtatcatag gaataagagc agggaaagcg ataatttcag caggagtttt
    17761 gatgattttt gctaaaacaa ttcctaaaca tcctatgcaa aatgaagcaa caaaagttgc
    17821 aattgctaaa gtttgaaaat gaaaatattc caccaaggta aaacgaagtc catgtgcaat
    17881 tgccgctaaa agagcagata aaataagggt ttttaaaggt ggattacaag cataagcaaa
    17941 gccaaatccc gccacagcag caaaaaacat atctcttaaa ataaattcaa tcatcttaaa
    18001 atcccaaaat ccgaaatact aagcgtcatg taaattccaa gtgctataca acaaatcaaa
    18061 atagccacgc tgataatacg gctaagcccc attaaaatat gatcttttaa tatatcaatc
    18121 acagaattta taaaaaatac tcctggtata agatacaaga tactagaacc caaagccaca
    18181 tcagaagtat tggtatatcc catatccagt ccaaaaaata caaaccacga tgagataaaa
    18241 gaacaaagga tgtattgaat tcttaaatca atctttgctt tagttaaaat atatcttaac
    18301 aacaatccca caaaagttgc aaaaaatact aaatttccag caccaaaatc accaccaaaa
    18361 agcctacaaa aagctgaatt tgccatagaa acaaataaaa gattaagcaa ataagaatgc
    18421 tttttttgtt gagaaatttg ctcaaaaacg acttttgctt tttcaagatc gtatttgtga
    18481 tcatatatag cccagcttaa agcacttaaa tcaaaaataa gcttaaaatt aacatgggca
    18541 tgatgattgg gtataacata agttctttga atggagttat catccatatc tacaacattt
    18601 aaagtaatat gatgaaaaaa gaaattgata tttatctcat agccataaac ctcagctatt
    18661 cttcctacgc attttgccac cctagctgta taagttccag cacctagcaa agttttagta
    18721 tatacgatta aaaaattagt taatctttgt atatcaggtt tttccatatt ttaataatct
    18781 ttgattgaat ttgttataat tatagcaaat tttaaaataa ataaggagaa aaaatggcaa
    18841 aaatcggtat agttggttta ggttatgtag gagctgctag tgcttatagc atagttactc
    18901 aaggaatttg ttcagaactt tacttatatg atataaaaca agatttagct ctagctcatg
    18961 caagagattt ggaagatatg tcagccattc atttttctta tacaaaaatt tttcatgtgc
    19021 caaatttaga aaatttagct tcttgcgata ttatcatttt agcttttaga aaagaaagct
    19081 taaaagaatt acctagtcgc ttggtagaac ttcaaaacaa tatcctcgaa cttaaagaca
    19141 ttgtcttaac cttaaaaaat gctaatttta aaggcaaata catcgtcgca acaaatccaa
    19201 atgacaccat aacttactac actcaagtat taagccaatt acctaaaaat catgtttttg
    19261 gtagtggaac aaatttagat agttcaagac ttaagaaatt tttagccaaa gatttaaaca
    19321 taaattcaaa agatattttt gcttgtatga ttggcgaaca tggagattct cagtttgcag
    19381 cactttctaa tgcaagcgtt ttaggacaaa atttattaga tttttacaag caaagattag
    19441 gcaaagattt agacatacaa gaactcgaaa aagccgtgat tagtgaggga tatttcatct
    19501 atgaacgcaa aggaagaaca gaatttggca taggaacttc ttgtgcaaat ttagccaaag
    19561 ccatcctaga agatagaaaa agtttacatc ctgtaagtgt ggtttttgat gatatagctt
    19621 tttcaatgcc cgctatcata ggaaaagatg gtatagaaaa ggtttttgaa ttaaaattca
    19681 atgaaaaaga aaaaataaaa ttagaaaatt caaaacaaca aatcaaaaac gccatacaaa
    19741 gcgtaaaaga taaaatttaa gcctttttaa aaggcttttt gattttaata taaattaaac
    19801 ttgctaaaat cacaaaaaca attataataa ttaaaatttg agttaaataa gttttaatca
    19861 actcttcatt ttgtcctata taataaccca aaaatacaag tatagccacc caaatagcgc
    19921 taccaagtgc agtaaaaagt ataaaattta taagtttcat ttttaccaaa cctgcaggca
    19981 tagaaatata ctgacgaatc cctggcaaaa gacgacaagt aaaggttgaa aattccccat
    20041 gtttgttaaa aaattcttca aatttagcaa atttgacttc gtttatacca aaatacttac
    20101 cccattttaa tacaaaattt ttaccccaaa aaaagcaaat ataataatta atcaaagccc
    20161 ctaaagcaga acctaaagtc ccactaagta tacaaagagt gatatcaagt tcgcctttat
    20221 gtgccaaata tccagcaggt atcataacaa cttcacttgg aaaaggtata aaacaactct
    20281 ctaaggtcat taagataata atacccaaat acccccaagc gctagccgtc tcaacaataa
    20341 aagaaatgat ttcttgcata ttagccttat ttgaagaaaa ttttaaaaaa ttgtagctta
    20401 aaagattaaa cagtaaaaag cggttttata ccgctttttt tatttacctg caactgaaac
    20461 ttgatttgga ttgtccgctg cacgagcgat catacactct tttaaaacag cagcatcagc
    20521 tggatcgcta acttttttat taatccagcg ttcaacttgt ttcattgttt ttgactctgg
    20581 ctctggagct tcgtattttg ccatcaaact tgcacaatca gccaaagcaa tgataggtaa
    20641 taaacttgca aaaagtattt ttctcatctt ttgctcctta gaattttaca ttatacatta
    20701 acatgatatt atcagctctt gctttatctt ttttcgctcc accaaatggt aagccacgat
    20761 taccccaaat attttggata ttagtataac ttaagcgtaa gaattgatat ctatcaagtt
    20821 gataaatcac ataaaaatca tgtgctgttc ctcttgtcat tcttatatta agcggatcgt
    20881 tgatacttgg acggctcata gtataccagt atctacttcc ccagaagaac tcatacccta
    20941 cttttaaagt cttggtaaaa tcatagcgtc cacctacatg cacagcatag ccatcttttt
    21001 cattaaattc caattgagat tgcacagcag gaattgcact tagagtatgt gcatttgttc
    21061 cgttagaata ccctaaagat acaaaataat taaaatttgt accaaaagca ttgtaatttt
    21121 caaaatgaat atttgctaaa gttaaatttc ctagattgta aacaccatct tgtaaaacat
    21181 taaccaaagc accgcttggg ccaattggaa gattgattcc tggaagtggt aatgcaaaat
    21241 cagtcatatg agccacattg aagataataa gattatcccc cataccttct ataggaagct
    21301 ctccttctac tgcagcatag taaagatttg catcagcatc tttttgatcg ctcatccagt
    21361 ctcttacctt accctcttca tcccattgat aagttttacc ataagctgca cggatggcta
    21421 ccttatgatc ttgcaaactt tcaggtttat aagtgattac tgctgcatca cctagagcat
    21481 taatcgctaa ggctggataa gtggattgtc ttaaagcatt gtttctaaga ttacttcctg
    21541 ggccatcggt tcctggctgt cttcctatgg ttgcaatcca ctcaggtgtg atatagtagt
    21601 caagataagc tctatctaca taaagtacag gcccacttgt tcttgtgttt cttcctgcat
    21661 ctaagtcaag tggacttcca ctccaaccca tttgagacca atttttagcc atagataaac
    21721 gaccatagaa tttggtttta tcattaatat cagcattcat atttaaatga agctcattca
    21781 tccatttgtt attagcacta taatcttgtc cgctaacttt atagtttgta tttgaaactg
    21841 ctgttgaaaa ctcaagtcca aatttaacct tgctcaaagc agcttggaat tctgtttcat
    21901 cggccctatc attaagatca gcaagttcag cttttacagc ttcattttgc ttagcttgag
    21961 cttccctttc ttttctgatt tgtgcaagtt cagcttgaat ttgtgcaagc tgtttttgaa
    22021 gcttggttat ctcatcatct gtatttttag caaaaagtga agatgaaaga agacaagcac
    22081 ttaaaataag tgaaaactta gttttcataa tcataactcc ttgtaatttt gttacattta
    22141 gcaaattaaa attgtgatta tagaaaaaaa agtttaaaaa aaaattatac attaatcatt
    22201 tttagctagt caaacttatg actagctttg taaatattgt agttttaaaa aagttt
//
LOCUS       DAPIWV010000016        19840 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.017, whole genome shotgun sequence.
ACCESSION   DAPIWV010000016 DAPIWV010000000
VERSION     DAPIWV010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.017"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(138..587)
                     /locus_tag="RJ272_000410"
     CDS             complement(138..587)
                     /locus_tag="RJ272_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381533.1"
                     /translation="MVIFCAALALLLFLGMIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEATKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(603..3848)
                     /gene="ccsA"
                     /locus_tag="RJ272_000411"
     CDS             complement(603..3848)
                     /gene="ccsA"
                     /locus_tag="RJ272_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDV7381534.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNKNKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAVANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWFAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVI
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLALFARRKRNFVGKL"
     gene            complement(3866..4561)
                     /locus_tag="RJ272_000412"
     CDS             complement(3866..4561)
                     /locus_tag="RJ272_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381535.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(4548..5318)
                     /locus_tag="RJ272_000413"
     CDS             complement(4548..5318)
                     /locus_tag="RJ272_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381536.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(5315..6367)
                     /locus_tag="RJ272_000414"
     CDS             complement(5315..6367)
                     /locus_tag="RJ272_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7381537.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYCEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(6367..7263)
                     /locus_tag="RJ272_000415"
     CDS             complement(6367..7263)
                     /locus_tag="RJ272_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7381538.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYSSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(7282..8391)
                     /locus_tag="RJ272_000416"
     CDS             complement(7282..8391)
                     /locus_tag="RJ272_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7381539.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(8413..9528)
                     /locus_tag="RJ272_000417"
     CDS             complement(8413..9528)
                     /locus_tag="RJ272_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7381540.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVGNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(9559..9993)
                     /locus_tag="RJ272_000418"
     CDS             complement(9559..9993)
                     /locus_tag="RJ272_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7381541.1"
                     /translation="MIIRWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPVQKTKHNIFLK"
     gene            complement(10007..10192)
                     /locus_tag="RJ272_000419"
     CDS             complement(10007..10192)
                     /locus_tag="RJ272_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HDV7381542.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKN
                     TTKKHIDIKIKHKRKLQ"
     gene            complement(10244..10750)
                     /locus_tag="RJ272_000420"
     CDS             complement(10244..10750)
                     /locus_tag="RJ272_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HDV7381543.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(10759..11790)
                     /locus_tag="RJ272_000421"
     CDS             complement(10759..11790)
                     /locus_tag="RJ272_000421"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDV7381544.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVV
                     VIDDLKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(11790..13091)
                     /gene="flgR"
                     /locus_tag="RJ272_000422"
     CDS             complement(11790..13091)
                     /gene="flgR"
                     /locus_tag="RJ272_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HDV7381545.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKIADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDR"
     gene            complement(13148..13597)
                     /gene="flgQ"
                     /locus_tag="RJ272_000423"
     CDS             complement(13148..13597)
                     /gene="flgQ"
                     /locus_tag="RJ272_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HDV7381546.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMLKTIKFNFLNSHKDELSDCFI
                     GAKISVKDIVNTDLLRAQSETYIKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(13573..14088)
                     /gene="flgP"
                     /locus_tag="RJ272_000424"
     CDS             complement(13573..14088)
                     /gene="flgP"
                     /locus_tag="RJ272_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HDV7381547.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSTTKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(14155..16743)
                     /gene="gyrA"
                     /locus_tag="RJ272_000425"
     CDS             complement(14155..16743)
                     /gene="gyrA"
                     /locus_tag="RJ272_000425"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDV7381548.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKERQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDENEIFASGGEENLENREIENLDDE
                     NFENEESVNTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(16784..17359)
                     /locus_tag="RJ272_000426"
     CDS             complement(16784..17359)
                     /locus_tag="RJ272_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HDV7381549.1"
                     /translation="MRCINCGAFALLCFCDLCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(17356..18000)
                     /locus_tag="RJ272_000427"
     CDS             complement(17356..18000)
                     /locus_tag="RJ272_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381550.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(18077..>19840)
                     /gene="lepA"
                     /locus_tag="RJ272_000428"
     CDS             complement(18077..>19840)
                     /gene="lepA"
                     /locus_tag="RJ272_000428"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDV7381551.1"
                     /translation="IAHIDHGKSTLADRIISECGAISDRQMSSQVMDTMDIEKERGIT
                     IKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVEAQT
                     IANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAICVSAKTGVGIK
                     ELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSIAKNDEVLVMST
                     DKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTITLVKNKAKEAI
                     GGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSLALGFGFRVGFL
                     GLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGEFIKIQNPSELPPVNKIDHIKE
                     PYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPLNEIVMDFYDKL
                     KSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQSKGRELVSAMK
                     EIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRKLLEKQKEGKKR
                     MKAIGKVNLPQEAFLSVLKID"
BASE COUNT         6841 a         3803 c         2357 g         6839 t
ORIGIN      
        1 attgattttc tatatttgaa aaattttatt ttttaaaaag tatatgttaa agtatatgtt
       61 ttttgtatta ttaatttttc aagtatgttc ttttggttat tttaactata aatcacagtc
      121 ctcttgagcg caccatatta tttatcttct ttaatttttc ttttagccaa tcccatatgc
      181 tcgtaagcat caatttcttt tttgtaagat ccagaaattt tcttaagttc tttatttaag
      241 taacttactg tttgtgcact tgcattaata tttgcagcca aagcagaaac aaattctagt
      301 ttcttttttg ttgcttcatc taattcttta gaagtttttg aaccaagttt atgtgtctgc
      361 acataaagtt tggcaagttc ttttaattca atatccgtta gcttaacatc ggaagcagca
      421 attatcattt tatctaagtc tgtatcaaat tttttagtct tttcagctac atgctgcttt
      481 tggctagttt tttgcttttt aattgttttt ttgccatcac ttgtaataag ataagcaatc
      541 atgcctaaaa acaataaaag cgctaaagca gcacaaaaaa taaccaaaaa aatatggctc
      601 atttacagtt tgcctacaaa atttcgcttc cttcttgcaa aaagagctaa aaccaccatc
      661 aatgcaaatc cccaataaac ataattagga atttgagccg cttcgcctgc agcgtaagaa
      721 tgaagtcctg ttaaaaagta atttactcca aaataagtca taataataac ccaataagca
      781 aacatactcc ataaagcaaa cacaaattga ttacaatatt ttggaatcat tctaagatgt
      841 aaaattgctg cataaaccaa aatactaact aaagcccaag tttccttaga atcccaactc
      901 caatatctcc cccaactttc atttgcccaa attgcaccta aaaaatttcc tacagtaagt
      961 aaacaaagtc caaaaatcat tgccatttca ttaattcttg tagcctctgt aatatttctc
     1021 aaaatattaa gattatattt tccatctttc ttaagaaaac acattaagaa caatgtaaag
     1081 ataccaagta aggcacaaag tcctaaaaat ccataactag cagtaataac agatacatga
     1141 atactaagcc aataagaatt aagcacagga acaagatttg taatttgcgg attcatttcg
     1201 cttaaatgtg caaccattaa tacaacaccg gataaaatag aagttaatga caaggctata
     1261 ggactttttc tagagaaaaa tatacccgac aaagacaatg cccaagctat atacaccata
     1321 ctttcatagc cattactcca tggagcatga cctgataaat aagcacgaag tccaagacct
     1381 actgtatgaa ttacaaaagc taaaacattt aaaacatata ccactttaaa tataaaagag
     1441 atttttaaat tcggtatgac cattttagaa aaaacaagaa tcaaaagtaa aaaacccgca
     1501 attaaatata caggagcgag tttaacgaaa atttcagcct tattagaaaa aatttccatt
     1561 tcaaccttgg ttttactagg catgacttta tatcctattt tttcttgata ttctttgata
     1621 aatttcaagc cttcatcagc tctaatccaa ttaccatctt taaaagcatt ttccacggca
     1681 ctaaaataat tctgtattaa agccaaaaca atatgccctt catccccctt aagagtagtt
     1741 acagcagaaa aaggtgcaaa ccaaacatta tttggattat tttgaacagg aataaattta
     1801 aataattcac cactaaaaac taaatttaca acattagctc tttcatctag ttttataatt
     1861 tccttatcaa aaactcctct tgcatttggg tttttacgat ttgcattttc aacatatttt
     1921 tgaagtttat atcggttatt ctcatcaaag aaatctttat aagaaatata tttagcacta
     1981 ggaatttcta aaatatttgc aacagcatca cgaactgctt gattttgtgg cattaaaata
     2041 aaaggttcca tttgccattt atctacatca acgagcatgg aaagcataac agcgttagaa
     2101 ttttgaccct tatagctatc actttgatga attttttcta aaatttctct tgatagcgta
     2161 tcaaaaggca ccattcttcc atctgctgat ttttgaacta ttaaagtggc aagagcttta
     2221 gcatgattag tatttaccac aggtaaggtc gaatttaaat cttgagcaaa agtcttttca
     2281 gaaccaaaag ataacaataa aataaaaata atcacacttg tatgttttaa agtgtcttta
     2341 ttaattaatc ttgccaaagt tctaaatcta gaatgtggat ttaaaaaatt cataaacatt
     2401 ccaagacaaa gcagaaaata acctatataa gttggtattt tgcccggatc tttatttaca
     2461 gataaaacag tccctttttc atcttgatca taagaacttt gataaaatct atagccatca
     2521 taatctaaaa cattattcat aaaaattcta taatcaaaat tttcattatt attttttacg
     2581 gtaatttcac ttgcataaga agctggagac atagaacctg gataacgatc taatacaaaa
     2641 tctcttaaat aaatatcaaa aggcaattgt tcataagaaa gcgcccaaga aataaagaat
     2701 ttttgatctg caagttctat cataataggt ttattatatt caaaaatata aaattcttta
     2761 ctttcatttt tatagcttaa ttctaatttt aaagcattag agccagttaa ttctaagttt
     2821 ttattcttat tgcttaaggc aaaatcttta aaatgcaata ataaagaatt tttccaattt
     2881 tgaggctcgc caaaagtaga aatcaacata gttctaccca cttctaacca agcagattta
     2941 aaccataacc aaaaactttc atcttgaggt ctattggagc cttctaaagc ttcttgcgca
     3001 tgcaaagaag cagctttaac tacaaagctg atatcattaa tttcatagag tcttctttcc
     3061 ttagcatttg ccttttctcc aattttaagg tctaaatttt gtccatctag catacttaga
     3121 aaatgtaagt tttcacttga acttaaagtt aaattttcat caatttttac aaaaggtgct
     3181 ttaacattat cattcataaa agcaaagtta accccttcta tattcttaac ttcacctttt
     3241 tcaaatttaa catcaacacc ttgagatcct ttttgagaaa gcatcaaaac caataaagga
     3301 tcagaattat tattttcttt ataagtataa tgagcattta agattaaatc tttatatttt
     3361 aatacagctt gatcatcacc taaattaagt tttagtttaa aagaattagc aaaaggcaaa
     3421 tttcctatat aacgatcatt aaccgcacta tagcgttctc catcttttat agcagaaata
     3481 cgcaaagaag tcttagaact ttctataagt gaattttgag tatgctctct aataggtaaa
     3541 ataccttcaa aaccagcata tcttgtcatt gcagaaccca ctaaaataaa taaaaaagaa
     3601 atatgaaaaa tcattaaagg taatttttta agcccaaaca ttttataacg aaacatcccg
     3661 catagtaaat taataccaag taaaagttgt atatattcaa accaaaaagt atcataaacc
     3721 attgcccaag ccgtaggagt tccataagca ctttcaataa aagttgccaa agcacaaaaa
     3781 agcgcaaaaa gcaaaaacaa tacaaccgaa actcttaaat cccctatgct ttttattata
     3841 tttttcattc tttttccttt aaattttaaa gccctaaata tttctttcta atctcatcat
     3901 cacctattaa atttttagcc tcgttttcca ttacaatgcg accattttcc aaaacataag
     3961 cataatcact tatttttaat gcagaataag cattttgctc taccaaaaga atagttatac
     4021 cctcttcttt taaacgcaca ataatatcaa aaacttcacc cacaatcttt ggagcaagtc
     4081 ccaaagaagg ctcatccaac atcaaaagtt ttggttcact cattaaagcc cttgaaatcg
     4141 caagcatttg cgcttcccct ccactcaatg ttccagctaa agcatgcttt ttacttgcaa
     4201 gtcttggaaa aagtttatac atttgctctc ttaaatgctc ataattttca gcattattaa
     4261 aagcacctat ttttaaattt tcctctacgc ttaaattaat aaaaacacgc cttccttcag
     4321 gaactaaagc tatacctttt tgaactaaag tatgagttaa atgcctttta gtatcataac
     4381 ctaagaaatt aacctcacca gttcttttaa ctgagtttaa aagcgcattt aaagttgaag
     4441 ttttacctgc tccatttgaa cctataagag aaacaatatg acctgtttcc actttaaaat
     4501 caatcccttt aacagcttca attaatccat aataaacatg caaatcttta actattagca
     4561 tcaaaatccc ctaaatacgc agcaattact tctttatgat ttacagcatc gcaaagttta
     4621 ccttcaaaaa ttgtttttcc ataatcaagt accaatacgc gatcacacaa tttatttaca
     4681 aatttcatat catgttctat aagcaaaacg ctaattttat aatcttttcg taatttaaaa
     4741 atgagctcag caagttcatc actctcagag ctattcatcc cagcggctgg ctcatcaagc
     4801 aataataatc ttggttgagt agccattgct cttgcaatct caacttttct ttgttgtcca
     4861 taactcaagc tagtagcctt ttcataggca aattctgcaa taccaagttc ttctaatatt
     4921 gcataagcct tctctttaaa tacttgttct atttttccaa aacgccctaa atgcaaaaag
     4981 gcttcaaaaa tattatattt catttgttta ttaaaaccaa taagaacatt ttcaagcaca
     5041 ttcatgcttg aaaaaagcct aatattttga aatgttctag ctattcctaa atgcacaatc
     5101 ttatgaggtt ttaagtgatc aattctttct cctagaaatt caaccgaacc tgaactaggt
     5161 ttatagttac ctgttataat attaaaaaga gttgttttgc cagccccatt aggtccaatt
     5221 aaagcaaaaa tttcaccctc attgatttta aaagaagttt cattaatagc cttaacacta
     5281 ccaaaacttt ttgaaatttg ttttaattcc aaaatcattt tttgctcctt ttaaaacgct
     5341 ttttaatccc tctaatcaca tcactcaact cacaataacc cattatgcct tttcttgcaa
     5401 aaagcattac taaaatcaga acaatagaaa aaacaaccat tctaagccct ggcgttgatt
     5461 ggatatcaag atttaaagaa tctattttta tatttaactc atctaaaaat ctaagccact
     5521 cacttccacc aataaccaat atcgcaccta taatagcacc tgtagtagaa ccaagtccac
     5581 ctaaaacaat aataatcaaa agctgaaaag taagtaaaaa atcaaattga gttggagata
     5641 cggtagtcaa cagacaagct aaaagtccgc cacctacacc ttctaaaaat gctgaagtgc
     5701 taaaagctaa agtttttatc caaaaagtat ttattcccat agcgcttgca gcatcttcat
     5761 catctcttat agccttcatt gcacgaccat atttagaata aactatattt aaaattaaaa
     5821 taaccgctac aatagcaata ccacctgtcc aatagatcgt ggaaaattgt ggaatatcta
     5881 ccagccctct tgagccatta gtaatagaag gaaaattaat agcagctatt ttaataatta
     5941 ttccaaagcc taaagttaca atagccaaat aatcccctct cacgcgaaat acagcaaaag
     6001 ccaaaatcag ggcaagtaaa gatgaacaaa ttccagccac aattaaagct agaataaagg
     6061 aatttgaatg gatagctaaa ataaaagaac taggaccatc taaaaaaaac tgatcatttt
     6121 ttgcatcagc acttaaaaga actaaagcag ccgcataagc tccaatcgca acaaatccat
     6181 tgggttctag tgaaaattgt ccagttacac cattaataag attgtaactc acagccaaaa
     6241 taataaaaat agcaatttga ttaacaatgt ttaatccata atccccaaaa atataaggag
     6301 aaatgaaaat aaaaataatt gaagcaatta aaaagattaa atgtgaaacc ttaattctaa
     6361 ccatcattaa aacctactct tttcaaaatt tatacctaaa attcccgtag gcctaaataa
     6421 caatataaac accaaaaaaa taaaagcaaa tgcatcttta aagcctgata aatctggaaa
     6481 aaaagccaca acaacaactt cagtaaatcc tataataagt ccacccaaaa ctgcacctac
     6541 tacagaacct atacctccta aaactgcagc agcaaaagct tttaaaccta ttaaagttcc
     6601 catagtaggt tcaacagagt aataatttgc agcccaaaaa acacccccaa ctgctgccaa
     6661 agctgaacct agggcaaaaa ctatagcaat aatacgattt gcatctatac ccattaaatt
     6721 tactgtttgt atatcaaatg ccaaagcacg aatagctata ccatatttgc ttttatacaa
     6781 aatccataac actgctatta aaataacaaa tgtaagagca ggaaccatta aagaactata
     6841 agttgttatc actccaccaa aattaacact ttcctcaaaa taacttggcg gtgtaaaagt
     6901 tctaggtgtt gaagtaaaaa gcatattaaa aagattttgc aagaaaaaac taataccgat
     6961 tgctgtaatc aacaatgaaa ttctaggagc ctgtcttaaa ggtttataag cgattctatc
     7021 tgtagctatt ccaacacaag cagcaaaaat cattgctaaa gacaaagctc ctagaaaagg
     7081 aacatttaga ttagtcatgc aaaaaagagc cgcataagca ccaaccatca taatatcgcc
     7141 gtgagcaaaa ttaataagtc ttaacacgcc ataaaccata gtatagccaa cagcaataag
     7201 ggcatacata ctgcctaaac taagtccatt aacaagttgt tgtaaaaata aagtagaatc
     7261 cataatcttt ctatttttcc tttaaggatt gataatatct ttataatttt gcttctgatt
     7321 tttaatttct ttaaccacta cagaacgagt tgcatttcct gtttgatcaa tactgataac
     7381 accagaaacg ccttgataat ttttagtttg gtgaattttt tcattgacac acttactagt
     7441 aagattttca acgcaagcat tcatagcatt tagcattaca aaatacgcat cagcacccat
     7501 agctgaaaaa tttggaactt cttttgttcc cttagctttt tcataaacac tgataaattc
     7561 tttgcttaat tttgtagttg gattattagc atcaaaacta tctgtgaaaa tataaccctc
     7621 gcttgcatct ccagctaaac taataaaagt ttgatcagca actccatctg cagaacccat
     7681 aggaatattt aaacctgcga gttttgattg tcttgcaaat aaagaagctt cactataata
     7741 aagcggtaaa aaaataaatt ctggatttaa acttttaact tgagctacaa tagctctaaa
     7801 atctttatca cctgaattaa ctcttaaaat tctaagaatt tgaccaccat tagacttgta
     7861 ctgtttttca aaagcttttg ctaaacctaa ggaatagtca gtgctttgat ctactacaat
     7921 aacagcactt ttgtaattaa gttttgaaaa aacatatttt gctaaagatg aaccttgaaa
     7981 actatccata aaacatactc gagaagaata tattttttta tcaagcaatc tatcaccagt
     8041 tgcagcagga gcgatcaatg gaattttatt atcttctgct acgcgcataa cttgcaatgt
     8101 attagcagta accatttccc ctataaggcc tataacttta tcttgagaaa ctaaacgatt
     8161 tgctccactc gaagattcta atttatcacc tttagtatca ataatagcaa gagaaacctt
     8221 atctccatta cttaaagctg attgcattga atttgcaagt ttaatccctt ctagtgcgct
     8281 ttgtccatat gctgcagtag ctccgctaag cggtaaaaca actcctattt tgacttccgc
     8341 agcacttaaa cttaaactta gaatacttgc taaaattaaa ctttttttca ttctctacct
     8401 ttattttagt aattatggat ttataattgt tttataattt tgtttttgat tttgaatttc
     8461 tttaatcaca acagaacgaa tggcattacc gctttcatct atgctaatca caccaccaac
     8521 agcttgaaaa tctttagttt gatgaatttt gctattaata cattcgctgc taagattacc
     8581 aacgcaagca ttcatagcat ttaacattac aaaatacgca tcagccccca tagccgaaaa
     8641 tgctggaagt tcttttgttc ctttaacttt ctcataagct gcaacaaaat cttttcctaa
     8701 ttgtgtagat ggattgttat aatcaaaact atcagtgaaa attactccat taacagcact
     8761 tccgccaaga tctataaaag tttgattgtt aacaccatct cctgctgcta aaagtttatc
     8821 aaaaccaatt tgtcttgctt gtctcgcaat taaagcagct tcaggatgat aaataggcat
     8881 ataaacaaaa tcaggattta aactcttaag ttgagaaacc acagctctaa aatctttatc
     8941 tcctgaatta ataacaagtt tttttataat tttcccacca ttattcttaa aagaattttc
     9001 aaaagctctt gccaaaccta aagaataaac attgctttga tctatgatga taacagcatt
     9061 tttaagccct aaatccttag atacataagt agcaaattta tctccttgaa aactgtcttt
     9121 aaaacaaact ctacttgcat atttcttttt atctagcaat ttatctccag atgccactgg
     9181 agctattaga ggaatttttt tctcttctgc tatagaaata gcttgaatgg tatttggagt
     9241 tgtagcttca ccaataatcc caaggacttt atctgttgct attaaacgat taactccgtt
     9301 tgaagtttca agtttatctc cttttgtatc tattgtgata agtttaataa catctccatt
     9361 tgaaagtttt ggttgtagct tattagccag ttcaattccg ttaaaaacat cttgcccata
     9421 agctgccaca gttccagtta aaggtaaaac tacccctata ttaatatcct tagcatataa
     9481 acaatttacc atagttaaaa cacttaaagt taaagttagt tttttcatag cattcctttt
     9541 aattatagtt tttacatttt attttagaaa tatattatgt tttgtttttt gcacaggttc
     9601 ttcttcaaga aggtctttta cttgcaaatc aagcgcaaaa tttccacctt taatataagc
     9661 aataatatta tctatatcct cgtggcttaa atttctagca taaaaagcca tttgagaagc
     9721 tgttgtagaa ctgctactat caagagtata acctatcaaa gctcctttaa tatcctcagg
     9781 agacatatct tttaaaattc tagatcctat aacactcttt tcagcattat ctccatggca
     9841 agtattgcat ttattttgaa aatacaaagc cttcgctttt tccatatcat attgcttatt
     9901 tgcatcaaag gtataagtaa aaaatgattt caagttaata ccaaaaagcg caacaacaaa
     9961 tattgaacta ataaacaacc atcgtataat catgattttc cttattttat tgtaatttcc
    10021 gtttgtgttt tattttgata tctatgtgtt tttttgttgt atttttttct tttttaatat
    10081 catagcgata acgaacagtc cctgaaactt ctatatcttt aaagacttca tctaacggag
    10141 ctgcaaaaac aaaatgattt aaaatcatac caattaaaaa tatttttttc atttttattc
    10201 tttaaacaca aaaaacgatt atatcaaaaa aagataatcc ttgttaatga ccacctttat
    10261 gtaaaaaata aagtcctaca caaagagcta aaatcgatcc agcaagaaaa gccatatcca
    10321 caggagtagc aaatttcatc tgcaaaaccc tttgaaagaa atttaccact aagaccataa
    10381 tgataacttt tgcaagcttg tcttttaatt gatctaagct atgcacctct aaaaccttgc
    10441 tttgttttgt ttgtttaaat tcttctattt cgctgataaa aagctcataa actccaaaag
    10501 aaaaaataaa caaaactaaa gccataagat aaagatcaac agctcctata attaaagcca
    10561 ccacatcctc atgcaaatcc acattagaac ctgcatcaaa aaaataatta taagtataaa
    10621 atataacttt taaaacatca taacttgcaa taaaaaacaa tacaaaagct ccaattaaac
    10681 caaaaattac gggtaaaatt gtaacaatac gacttctaac aagtaaagat tcaaatattt
    10741 tctctaacat ttttttcctt atttattttt taattctaac catttttgcg caatacgcac
    10801 agcatttgtt gcagcaccta cacgaatttg atctgccaca caccaaagat ggagtatttt
    10861 tttatcatac acatcagcac gaattcttcc tacataagtt tcattagtat cgctagtcat
    10921 taaaggcata gggtattttt tatttttaag atcatctatg acaacaacac ttggtgcttt
    10981 ttctaaaatt tctttagctt tttttacatc tatttctttt tcaaaatgca tagtaatagc
    11041 ttcgctatga cttcttaaaa caggcactct tacacaagtt gctgaaactt ctaaattttt
    11101 atgtaaaatt ttttgagttt cattgaccat tttaagttct tctttagtgt aatcattatc
    11161 cataaaaaca tcaatttgtg gaataagatt aagtgctaaa gtataaggaa aagtttgagg
    11221 ttcaaattca tcaagtttaa aagcaaaaaa actttgcatg gcttcaacca attcttgcat
    11281 tccttctttt cctgctccac ttgcagcctg ataggtactt acatcaacac gctttaaatt
    11341 aaatgcatca tttaaaggtt ttaaaacttg taccatttgt atagtagaac aatttggatt
    11401 agcaataatc cctgtttttt tccaatcttt aatatcctca ggattgcatt caggaaccac
    11461 caaaggaaca tctttttcca ttctaaaatg acttgtatta tcaataacaa cagcacccga
    11521 ttctactgca aatttagcat atttttcact cacacttcca cctgcgctaa aaaaagcaat
    11581 atcaatagga ttttctttaa atacattttc agtaagttct ttgactttat aagctttgcc
    11641 tttaaattct acttcactac ctacactttt tgcacttgct aaaggtaaaa tactttccac
    11701 tggaaaatca agttcatcta aaacatttaa aagctcttcc ccaaccgcac cagtagcacc
    11761 cacaatggct attttttgtt tttttgacat tacctatcct ttatttgata ttttttaatt
    11821 ttttcattta aaatttttat atccatgcct aaaatttgag aagcttgatc cttgtcataa
    11881 tctacactta aaagaacttc acaaatcaat tctttctcta aattctttac atcttttttt
    11941 atacttctag cttctaagaa caagtcttca cttgaaattt catcattttc acttaaaata
    12001 caagctcttt gtacaacgga tattaattct ctaatattac caggaaaatc atattcaagc
    12061 aaagcatttt tagcttcttg gctgagctgt ttttccttaa aatcatattc tttacaagta
    12121 tcttctaaaa ccttttgagc tatacctaaa atttcttctt tacgctctct taaaggcggg
    12181 atattaatag gaacagtgtt taaacgataa tataaatctg agcgaaattc gccatttttt
    12241 attttttcat ccaaatttgc attagttgca ctgataattc ttacatctat tttgatgctt
    12301 ttcgtacttc caagtcgcgt aatttctttt tcttgcaaag ctcttaaaag tttggcttga
    12361 atttcataag gcatttcgcc aatttcatct aaaaacaaag taccctcatt agccatttca
    12421 aaaagcccta ttttagttgc attggcatca gtaaaagcac ctttttcaaa accaaaaagc
    12481 tcactttcaa tcaaatttgc aggaatggct gccatattaa tagcaacaaa aggcttatta
    12541 gagcgtttag aatgagtgtg aatataacga gaaaatacct cttttcctac tccactctct
    12601 ccaaaaaaca ttacagaggc atcagtttta gccgcttttt gacttaaatt taatgttttt
    12661 tccaaattag gagaagttga aaaaaaatct ttattttctt cttttttttc attttttttg
    12721 ctttttttat cggctatttt ttctcttatg attttagcac gcttaatagc ctcgactaaa
    12781 gtatcaacat caaaaggttt ggttagaaaa tcttttactc ccaaacgaac cgcttctata
    12841 gcacggctta aagtagcatt tcctgtcata ataataaaat catatttatt ttcacaggct
    12901 ttaacaaatt ctatgccatc aattcctggc atattaatat ctgtaataat caaatctgta
    12961 ttctcatcta ttttttttaa agcttcagta gcagatttat aagatttaat attaaattct
    13021 tcatactctg ctaatgcaat ttctaaggat ttgcgcatat taatatcatc ttctactatg
    13081 actaaattca tcctaagcct tttaaaaaat ttctgctata gtatccaatt tgcgcttaat
    13141 tttgaattta ctttttttta agataataaa ttatcgcatt ttgttcgcca aattccacgg
    13201 taaaacgcaa gggtaaaatt ttaatataag tttcactttg agcacgtaat aagtcggtat
    13261 taacaatatc cttaacactg attttagctc ctataaagca atcacttaac tcatctttat
    13321 gagaatttaa aaaattaaat ttaattgttt ttagcatatt atcatcaatt aatcctaaag
    13381 aagttcgagg taaaactttt aaatcttgat cactataaga aatttcacat acccattgtt
    13441 cttcaacatt ttcactttgc gtcattgcta aggataaatt ttgattttga tgaaagagaa
    13501 tgaaattttt actagaaagc tctgcccaaa aaataaattc atcttgggca aaaagcttaa
    13561 agctaagaaa aattaataag caaacaattc tttccacttg tctgcatcga ttttaagttc
    13621 taagtttact ctataaagcc cttgattaaa attctgatca ataatacttg cattttttat
    13681 caaaccattt acttgcgcag taatagttga acttctaagc attgcatctt ttacagtgtc
    13741 tttaccattc actttcacac cataaagctt acttgcaagc tgtctgtaag catctgtaat
    13801 cgctgctctt tttgctaaag ctagggcttg agcagtagaa actgtattca tcggagcaat
    13861 cccttcacca actgctgtaa aactaagttc cgtttcacta gcgtctggag ctaacatttt
    13921 ttcttctctg ataatatcac gcacatcatc tttgtcgact ttttgcacga taacatcttg
    13981 agatggagca gtgctatttg cacttgaatt tttagttgta ctgtttgcac ttggtacaca
    14041 accagcgaaa attcctgcta ttgctagcat aaaataaatt tttttcattt ttacaccttc
    14101 aaaatattgt aattagtaaa ataaaaagca ataagcgttc caactttaaa cttattacaa
    14161 atctaaacca aagttttcat cgcttaactc atcctcatca ttttcctctt taggacactt
    14221 agcgatgcta accacctcgt cattttccac attaacaacg atgacgccac ttgtattacg
    14281 ccctgctttt ctaatacttt gcatatcaac acgtatcatc ttgcctgaac ttgtaagagc
    14341 catcaaatcc atagtttcat ctactataac tacgctaata agatctttgg ttttttctgt
    14401 aagtttcatg caaattacac ccttgccacc tctactttgc aatctatatt ctccagcatt
    14461 ggtgcgtttt cctatacctt ttgcacttat gcttaaaatt tcttgctcat cattttctat
    14521 aacaactgca cctactaatt cgtcattttt ctctttaaac ttaatagcgg tcaccccacg
    14581 acttacacgg ccgatttcac gcactttagc aagtgggaat ttgatacaca tacctttttt
    14641 ggttactgca aagagcattt taccttgtgt gtttacactt tcttcatttt caaaattttc
    14701 atcatctaaa ttttcaattt ctcgattttc taaattttct tcaccaccac tggcaaaaat
    14761 ttcattttca tctctttgaa caataatagc agttaccaac tcatcatttt catccaagtt
    14821 gatcgctcta actcctacac ttctgatatt ttgatattca ctcaaatttg tacgctttac
    14881 aataccattt ttagtaaaga aacataaaga tttgctctca tcaaaatccg tggttggaat
    14941 aatagccatg attttttctt cagcttgtaa attgataaga tttaccactg cttttccttt
    15001 agccgttctt gagccttcag gaattttata aactttaagc caataaagct gtccacgatc
    15061 tgttacaaac ataagcgtat catgtgtatt tgccgtaaag aaactttcta taaaatcatc
    15121 atcataagtc gtaacggcta attttccttt tccacctcgt ttttgttttt catattgttt
    15181 actaggcaca cgcttaatat aaccacgatg tgtgatagtt acaaccatat tttcattagg
    15241 aatcaaatct tcaatatcaa tatcatcgta atcatcttca atttgagtaa tacgtggcac
    15301 atcaaattta cttctaattt cttttaattc atcgcgaatt aaattttcaa gcaaggtttc
    15361 actttttaaa atttcttcaa gtcttgcaat ttctttcatt aattctgcaa gttcattttc
    15421 gattttttct ctttcaagtc ctgttaaacg accaagtttc atatccaaaa tagcattggc
    15481 ttgaagctca ctaagaccaa atttagctac taaagaatct cttgcggtat tattatcaga
    15541 actattttta attaaagcaa tcacttcatc tatattatca agtgcaattt taagaccttc
    15601 taaaatatga gctcttgctc ttgccttttg aagttcaaaa atcgttcttc taataataac
    15661 tgtttttcta tgagttaaga aaagatttaa aagttccaac aaagagaaaa ttttaggttc
    15721 tttattatga attgccaaca taatcacacc aaaagtactt tccatagtgg tagatttaaa
    15781 tagattattt aaaacaattt cactcatagc ctcacgttta agctctataa caacgcggat
    15841 tccttcttta ttactctcat ctcttacttc agatattcct tcaatttgcc tttctttaac
    15901 aagctctgca atctgctcta taagcctagc tttattggtt tgataaggaa gctcatcgat
    15961 aacaataaca tctttatttg tctttttttc aatatgagtt ttagctcgca ctttcacgcg
    16021 accacgtcct gtgcgataag cttctataat acctttttta ccataaatta ttccacctgt
    16081 tggaaaatct ggacctttga taaactgcat aatctcttct aggcttgcat ctttattatc
    16141 aagcaaatat aaaagtccat ctatcaactc atttaaacta tgaggtggga tgtttgtcgc
    16201 catacctaca gctataccac ttgaaccatt taataataaa tttggaaccc tagaaggtaa
    16261 aacatcaggt tcgctttctg aaccatcata atttggaaca aaatcgaccg tatctttatc
    16321 tatatctttt aaaagctcat gagaaagttt actcattttt gcttcagtat aacgcatcgc
    16381 agcggcacta tcaccatcta tagatccaaa gttgccttgt cctgtaatac ttggatatct
    16441 catagaaaaa tcttgagcca ttctaaccaa agcatcataa actgctgtat ctccatgtgg
    16501 gtgataacga cctataacag cacccactat acgggctgat ttgacaaaat ctgttctact
    16561 ttttgcctca tcattttgca tagcatataa aattcttcta tgaacaggct ttaaaccatc
    16621 tcttgcgtca ggcaaagcac gacctataat aacactcata gaatagtcta aataactact
    16681 ttttatagaa ttttctatat ctacaagttc aatatcagaa tctttgctaa aaatattctc
    16741 cataaaaatc cttctattag ttcaaagttt tgattatagc atattaaact tttgcatcag
    16801 ctaaaacaag agcaaaaagt acagaaattt tattttcttc taaaactttt ttagcttcca
    16861 aaaggctaga accagttgtt acaatatcat ctactaaaat tacaggttcg tgaatggttt
    16921 ttaagagttt gtaatttctt ttatgttttt gacgaaattc taaacttttt ccagaatatt
    16981 tcacagaatt ttgtgctttt aaaacattaa aaacaggttt tacaaatttt gttttaagat
    17041 atctagctaa aatagcagaa tgtgaataaa gcatatcttc aaccttatca tctaaagcta
    17101 taacattaat tgtcattcta ggatcaaaaa aatctttaaa ttttgcaaaa cttaatttag
    17161 caagcatttt ataaacaaaa taaccataaa aataatgttt agagtgaagc aagtgttgta
    17221 tttcatggta tttataaaaa gaataaactt tgaaattatt atcaagcttt cttacattta
    17281 aggaaaattc agaaagctct agctcacata aatcacaaaa gcagagcaga gcaaaagctc
    17341 cgcaatttat acacctcaaa gttcagagat taaactagct gctttatttg ccatttgttt
    17401 tattaacaaa tgagtataaa aagttgtttc ttttagatca tcaaaacctt gtacatcttg
    17461 cttggtacgg attgtaaatt tcttattttt atttatatca ctaacttgta aaactcctac
    17521 tagttttgaa tgtaatccta tagcatcttg agttgctcca taagatataa attctaaatc
    17581 aatcttactc acataaggtg aattttgatc gttattgtca agcacaacta ttcctctagc
    17641 ttcaagttct tgttttaaat aagtataaaa taccgcatta aaattcacat caacaaataa
    17701 ctttttccct ttagcattta aaaccttttg cccttctttt aaatcataaa atctatgtaa
    17761 ataaaccttt ttcaaagcaa taccagtgtc taaagtgcgt ttattggcac aacattgaat
    17821 tccaacatcg ctaatatata aaagcccttt aatctttgct tcaaaaccac caggactttc
    17881 acaagaactg cattgagaat ttttagaaat ttgattaact tgagcaaaag tatcttgttt
    17941 agttgcacaa gcactcaaaa ataaaatagg cactataaaa atcaaaaatt ttttaaacat
    18001 tttttctcct tagaaaatta ttttaaaatt gtattaaaaa tacaagcaaa tttcaagcca
    18061 agttttaaat ttatcatcaa tctatcttta aaacactcaa aaaagcctct tgaggtaaat
    18121 ttaccttacc tatagctttc attctttttt taccttcttt ttgcttttct aaaagctttc
    18181 tttttctagt aatatcccca ccataacatt ttgctgtcac atttttaccc atggatttaa
    18241 cagtttctct tgcgatgatt ttatttccaa tacttgcttg aatggccact tcaaaaagct
    18301 gtctaggaac tatttctttc atagcactaa caagttctct tcctttactt tgcgcttttt
    18361 cattaggcac gataatgctt agcgcatcaa cattttcacc cgctacctta atatcaagtt
    18421 ttaccaaatc ccctactcta aattctatag gctcataatc aaaactcgca taaccttttg
    18481 ttaaggactt taatttatca taaaaatcca tcacaatctc atttaaaggc acatcatatt
    18541 ctagcaaaac acgctcaggt gtgatatagt ccattttaac ctgtactcct cttttgcgat
    18601 ttaaaagagt gattaaattc cctaaaaatt cacttggagt aatgatagta gctttaacat
    18661 aaggctcttt tatatgatcg attttattaa caggaggaag ctcgctagga ttttgaattt
    18721 taataaactc tccatcggtt tgataaattt cataagtcac agttggagct gtagcaatca
    18781 aatcaagatt aaattctctc tcaagccttt ctttgataac ttccatatgt aaaagcccta
    18841 aaaatcctac cctaaaacca aagcctaagg ccaaagaagt ttcaggctca taagtaatag
    18901 aactatcatt aagctttaat ttatccaaag catctcttaa atcttcaaat ttatccgttt
    18961 ctataggata aagtcccgca aatacaaaag ctttagcctt ttcaaaacca cctatggctt
    19021 ctttagcttt gttttttacc aaagtgatgg tatcgcctac ttgtacatca cctacggttt
    19081 taagccctaa aaccaccaca cctacttcgc ctgattgtaa agattgagtt ttaattggac
    19141 ttaaagggtg gggataaaaa agatcttgaa ctatatgttt tttatccgta ctcatgacta
    19201 aaacttcatc gtttttagca atacttcctt cataaatcct aaccaaagcc aaagcaccca
    19261 aataattatc aaaccaagaa tcataaatta aagccttagt aggagcttca tcatctgttt
    19321 ttggtgcagg gattttagta ataattgttt ctataagctc ttttataccc actcctgttt
    19381 ttgcactcac acaaattgca tctttgcaat ctatacctat aatatgctcg atttcatgct
    19441 ttactttctc aacatcagca ttaggtaaat cgattttatt aatcacagga atgatttcaa
    19501 gattattttc aagcgctata taaacattag ctatagtctg tgcttcaaca ccttgagaag
    19561 catctactac aagcaaagct ccttcacaac ttgccaaaga acgactcact tcataagaaa
    19621 aatccacatg gccaggagta tcaataagat ttaaaacaaa attttcatta ttaaatttat
    19681 aatttaaacg cactgattgt gcttttatgg tgataccacg ctctttttct atatccatag
    19741 tatccataac ttgtgaactc atctgcctat cgctaatagc accacactca ctaataatcc
    19801 tatctgcaag agtagatttt ccatgatcta tatgagctat
//
LOCUS       DAPIWV010000017        19771 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.018, whole genome shotgun sequence.
ACCESSION   DAPIWV010000017 DAPIWV010000000
VERSION     DAPIWV010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.018"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1277)
                     /locus_tag="RJ272_000429"
     CDS             complement(<1..1277)
                     /locus_tag="RJ272_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDV7381552.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLL"
     gene            1250..1522
                     /gene="yajC"
                     /locus_tag="RJ272_000430"
     CDS             1250..1522
                     /gene="yajC"
                     /locus_tag="RJ272_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDV7381553.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1515..3095
                     /gene="secD"
                     /locus_tag="RJ272_000431"
     CDS             1515..3095
                     /gene="secD"
                     /locus_tag="RJ272_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDV7381554.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASAFIVIFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNTRFWFGYRRR"
     gene            3095..4066
                     /gene="secF"
                     /locus_tag="RJ272_000432"
     CDS             3095..4066
                     /gene="secF"
                     /locus_tag="RJ272_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDV7381555.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVIIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            4076..6505
                     /locus_tag="RJ272_000433"
     CDS             4076..6505
                     /locus_tag="RJ272_000433"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDV7381556.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6502..7014
                     /locus_tag="RJ272_000434"
     CDS             6502..7014
                     /locus_tag="RJ272_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7381557.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6998..8395
                     /locus_tag="RJ272_000435"
     CDS             6998..8395
                     /locus_tag="RJ272_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381558.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            8361..9545
                     /locus_tag="RJ272_000436"
     CDS             8361..9545
                     /locus_tag="RJ272_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDV7381559.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGMQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            9532..10434
                     /locus_tag="RJ272_000437"
     CDS             9532..10434
                     /locus_tag="RJ272_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7381560.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYIIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            10371..10766
                     /locus_tag="RJ272_000438"
     CDS             10371..10766
                     /locus_tag="RJ272_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDV7381561.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            10766..13702
                     /locus_tag="RJ272_000439"
     CDS             10766..13702
                     /locus_tag="RJ272_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDV7381562.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDALIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIESEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            13704..14465
                     /locus_tag="RJ272_000440"
     CDS             13704..14465
                     /locus_tag="RJ272_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7381563.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            14462..15148
                     /locus_tag="RJ272_000441"
     CDS             14462..15148
                     /locus_tag="RJ272_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HDV7381564.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            15145..15957
                     /gene="thiD"
                     /locus_tag="RJ272_000442"
     CDS             15145..15957
                     /gene="thiD"
                     /locus_tag="RJ272_000442"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDV7381565.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNIVIDPVMFAKNGYALMPQENCDFFKQTIVKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEINANDVFYDGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            15947..16579
                     /gene="thiE"
                     /locus_tag="RJ272_000443"
     CDS             15947..16579
                     /gene="thiE"
                     /locus_tag="RJ272_000443"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7381566.1"
                     /translation="MKNKLDLSLYLVATKGSKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            16557..17186
                     /locus_tag="RJ272_000444"
     CDS             16557..17186
                     /locus_tag="RJ272_000444"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDV7381567.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(17183..17635)
                     /locus_tag="RJ272_000445"
     CDS             complement(17183..17635)
                     /locus_tag="RJ272_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381568.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQARQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLNKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(17632..18294)
                     /locus_tag="RJ272_000446"
     CDS             complement(17632..18294)
                     /locus_tag="RJ272_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381569.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLSQQGLISKNISSFNLQNNKLKICLKRQTKYCLKKRI
                     LL"
     gene            complement(18291..18593)
                     /locus_tag="RJ272_000447"
     CDS             complement(18291..18593)
                     /locus_tag="RJ272_000447"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381570.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYTQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(18590..19321)
                     /locus_tag="RJ272_000448"
     CDS             complement(18590..19321)
                     /locus_tag="RJ272_000448"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDV7381571.1"
                     /translation="MLYILANGAMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(19321..19710)
                     /gene="fliW"
                     /locus_tag="RJ272_000449"
     CDS             complement(19321..19710)
                     /gene="fliW"
                     /locus_tag="RJ272_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HDV7381572.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT         7189 a         2289 c         3534 g         6759 t
ORIGIN      
        1 cttaaaagct ttttagggag tataactata ttctctttgc catttgtagc atgataaaca
       61 ctaaccccat atttacttgc ataaaatttc attaagagtt gctggagttt gtattcgcta
      121 ctattattaa accaagcatt gttgcttagg gctataataa tttgtgaatt ttgatagttt
      181 tgttctttgg tagcttcata acaaattgca tttgtgataa tttgattatc taatttatat
      241 ttgctttgta taggaccttt ggaaaattct tcaatatttt tgagaaaata tttttttgtt
      301 aagtctttaa aaaatggaat ttcttcacca aagggaacta aaaaatgctt atttaaaata
      361 tagacattgc cttttttaaa gatataagta ctattgtaag tatgctcttt ttcaacatga
      421 aatgctcctg taataatggt gattttataa gataattctt taagcataag ctcatatttg
      481 gtatttttta aatcaaaagc aaaagcggtt tcaggcaaga ttacaagttc ttttttttca
      541 tttatagctt gaagtatatc ttgaattaag atatcagaat ttgattttaa attttcttgt
      601 aaaaattttt gatcttgaga gatattagta ttgatgagtt tgtagtttaa attaagagtt
      661 tgagcttgtt tttcattata ttgaaatcca ctaaagaata aaataagaac aattgctatt
      721 ttataatatc ttgatatata accctcatag atgaaatatg ctattaaaaa tatgcaaata
      781 atgccacgat aacttgggtc aaaaaaacca taaactgtaa aaatccccca attaaaccaa
      841 tcaaatccta aaggatggat aaaacttatg caaaaaattc cacaaagcct taaaaaatca
      901 aattttaata aataacataa tctaaaaagt aacccataaa taaaaccaat gataattggt
      961 ataattggta ctaaatagtt tagattaaaa taaattgaag ataaaccaat ccaccaaaac
     1021 caaagaatcc ctacaaaaaa acctatccaa aaatattgtt tagaagtttt actttttaga
     1081 agtaaaacta acccccaaat agctaaaaat ggactaatgg tttgtgtaaa aatattttca
     1141 aaaaatgata gataaataga atttgaaagt aaaattgcaa taaaaaagac ttttattatt
     1201 ttaaaaatga tagaattagt gtttaatttt tttggaataa aggaaaaata tggcagaaaa
     1261 ttcaatttta acttcattgt tacctcttgt agtgttattt gcaatttttt atttcttggt
     1321 gatcagaccg caacaaaaac aagcaaaagc acataaacaa atgcttgagt ctttgcaaaa
     1381 aggagataaa atcatcacta atggcggact tatttgtgaa gtcgtaaaac cagaggagga
     1441 ttttatcaaa gttaagctta atgaagacaa tgttactgca aaaatttcaa gagaatttat
     1501 agcaaagaaa attgatgcgt aattctaaaa tcaattatcg cttgattatt tttatagcgg
     1561 tatttatttt tggagtggct ttttcactcc cttctttttt gcagtcagaa cgtggtgcga
     1621 agattaattt agggcttgat ttgcaaggtg ggctttatat gctcttaggt gtagataatg
     1681 aagaagctgt aaaatctaaa ataaaatcaa ttgcatcttc attgagttat tcttttaata
     1741 aagaaaatat tttaaatgat ggcttaaata cccatgatga tattttagaa tttactttgc
     1801 ttgataatgc agatattgca aaagttgaaa atttgcttaa agaaataaaa ggaattaata
     1861 tacaaagtga aaatatgcac tataaaattt cttttacctc agaagaagta aaaaatatag
     1921 aaaattttgc acttttgcaa gcagttgaaa ccataagaaa taggcttgat caatttggtt
     1981 tagcagagcc aacagttgct aaacaaggtg atgataagat tttggttgaa cttgcaggga
     2041 ttaaaaccaa agaagatgaa ctaagagcaa aagaacgcat cacaaaagca gcgcatttgc
     2101 aacttatgga agttgatgat tctaaaatgg gtcaagcttc tacaatgagc gatgctgagg
     2161 ctgcgagtta tggactgatt ttagtgcctg attctagaaa tccaaattta aaatatacct
     2221 taaaaagtat acctatttta gatggatcta tgcttactga tgctagagta ggacttagcg
     2281 ataagagtaa ttatcctgtg attaatttta ctttaaatgc tgagggttct aaaaaatttg
     2341 ctgattatac aggagcaaat gttggaaagc gtcttgctat tgtacttgat aataaagtat
     2401 attctgctcc atctatcaat gaacgcatag gcggaggtag tgggcaaatc agtggagctt
     2461 ttactcaaga agaagcacgc gatgtggcgg tagctttaag aagtggagct ttgcttgcgc
     2521 ctgtaaaatt acttgaacaa agaagcatag gaccatcttt aggtgctgat agtattaaaa
     2581 tgagtatgat agccttaatt ggtgcatcgg cttttattgt aatatttatg atgatgtatt
     2641 acggtgtggc aggaattttt gcaaatattg caatgttagt taatgttttg gtagtagtgg
     2701 ctgttatggc tatgtttgga gcaactttaa ctttaccagg gatggcagga cttgttttaa
     2761 ctgtgggtat ggcagtagat gcaaatgtga ttatcaatga gcgcatacga gaactcttgc
     2821 gagatggagt aaatataaga gctagtatag aacaaggtta taaaaatgct atgagtgcga
     2881 ttatagattc aaatatcact tctttagtta cttcggtagc gctttatgcc tatggaacag
     2941 gagcagttaa aggttttgct gtgactttgg gaattggtat tgttgtttct atgattacag
     3001 ctattttagg aactcacgga atgtttgatt attttatgca acgcatagaa aaaagtaata
     3061 atacaagatt ttggtttggt tacaggagaa gataatgcag ttttttagcg aaaagaaaat
     3121 ttatgatttt atgagaatgc gttttgctgc tatttctctt tcttttattt tgttttttgg
     3181 ttctatttat ttgctttggg ataggggttt gcaatatggc attgatttta gcggaggaac
     3241 tttagttcag cttaaatatg aaaatgcagc tcctataaca caaattcgag aaattttaga
     3301 aaatcaagga acttttcaaa atttatctgt aactgaattt ggaagcaatg aagaagtaat
     3361 catacgcttt ttaggaagta atgataatgt aagcaatgat ataggtgagc atataagcac
     3421 tcttttaaag gatacgggaa aatttgaagt gcgtcgtgct gatgtggtag gtccaaaagt
     3481 aggtgatgaa cttagaaata aaggacttat ggctatagct gtatctttga tagcaatttt
     3541 aatttatata gcgttgcgtt ttgagtggcg ttttgctctt gcggctataa tcagtgaaat
     3601 tcatgatgtt gtgattactt taggggcaat ttctttattt aaaattgatg tcaatctaga
     3661 tactttggct gctgttttaa ctgtgcttgg gtactctttg aatgatacaa ttattatttt
     3721 tgatagaatc agagaaggta ttaaaacaag taaaaaaacc gaacttgcac ctattatcaa
     3781 tgaaagtgtt tcagcaactt tgtcaagaac ggttttaact tcagggttaa ctttagcaac
     3841 tgttgtgata ctttatttct ttggcgggga aatgatacaa ggattttctt tggctttaat
     3901 tgtaggtatt atagcgggaa ctttaagctc tatttttgtt gcaagtccga cattattatg
     3961 gtttaaattt agtgtgcttg agtttagaaa taaagaaatt gaaaaagcaa aaagaaaaca
     4021 agataaagaa cgcaatcgtg caatgtatga aaaaggaact gtgtaaggag aatttatggc
     4081 ttatgaagca agtttaatag aaaaaaaatg gcaaaaaatt tgggatgaaa atgaatattt
     4141 tgagccaaaa gatgacttaa atttgcctaa aaaatatatt ttatcgatgt ttccttatcc
     4201 tagcggacgc attcacatgg ggcatgtaag aaattatact ataggtgatg ctttagcaag
     4261 atattatcgc aagataggtt ttaatgtttt acatcctata ggttttgata gttttggcat
     4321 gcctgctgaa aatgcagcta ttaaacataa aattcatcct aagtcatgga cttatgaaaa
     4381 tatagcttat atgaaaaaag aacttttttc tttaggtttt tctttttcta aaaaaagaat
     4441 gcttgctact tcagatccac tttatacaaa atttgagcaa gaatttttta ttaagatgtt
     4501 tgaaaaaggt ttgatttaca ctaaagaagc aaatgtaaat tggtgtgaac aagatcaaac
     4561 ggttttggct aatgagcaag ttgaagacgg aaaatgttgg cgttgtggtc atgaagtggt
     4621 gcagaaaaaa atgccaggtt attatgtaaa aatcactgct tatgctgagg aacttttaaa
     4681 agatttagaa gaattaaaag ataaatggcc taatcaagtt ttaactatgc aagaaaattg
     4741 gattggtaaa agcgaaggtt tggaattttc tttaaattta gacgaagaaa gtaagcaaaa
     4801 aaccaaagaa agttctttag aagtttttac tacaagagca gatacaattt atggagtttc
     4861 gtatatcgct ttagctccag aacataagat tgttcaaaat ttgctttcac aaaatttatt
     4921 aaatcaagat gtattaaata aaatcaaagt tattcaaaat caaagcccaa gagaaagaca
     4981 aagttctgaa aaagaaggtt attttttagg aatttatgcc attcatcctt taagcggaga
     5041 aaaaattcct ttatgggtgg ctaattttgt cttggctgat tatggtagtg gagcggttat
     5101 ggctgttcca gctcatgatg aaagagattt tgaatttgca acaaaatata atcttgccat
     5161 caaacaagtt attcaaactc aagaaaattt accttatatg caaaaattag gaaaattaat
     5221 taatagtcaa gaatttgata atcttgattg taatgaagca agattaaaaa tcatttctca
     5281 gtttgaagct aaaaatatag gaaaaagggt tgtaaatttt aaaattcgtg attggggtgt
     5341 ttcgcgtcaa agatattggg gtgcgcctat tcctatgatt aaatgtcaaa gttgtggtat
     5401 agtacctcaa aaactagaaa atttacctat tactctgccc gaagatgtgc aaattacagg
     5461 tgagggtaat ccacttgata aacatccaac ttggaaaaat tgtatctgtc caaaatgtgg
     5521 taaagaggct caaaaagaaa gcgatacttt agatactttt tttgaaagtt cttggtattt
     5581 tgcacgtttt gcaagtgatg agaaaacttg gcaggaaaaa gctttagatg aaaaaagtgt
     5641 aaagtattgg atgagtgtgg atcaatatat aggtggtatt gaacatgcaa tcttgcattt
     5701 actttatgcg agatttttcc aaaaagcttt aagagatttg ggttatttaa cacaaaatga
     5761 accttttgat agacttttaa ctcagggtat ggtgttaaaa gatggtgcta aaatgtcaaa
     5821 atcaaaaggc aatgttgtag atcctgatga gattatagaa aaatacggtg ctgataccgc
     5881 aagacttttt atactttttg ctgcgcctcc ggctaaagag cttgaatgga atgatgatgc
     5941 ggttgaaggg gcttatagat ttatttgcaa actctatgat agggcgcaaa atgttaaaaa
     6001 aggtgagctt gtagaattaa aacaagaaaa tttaaacaaa gaagaaaaat atgcaagatt
     6061 aaaggtatat gaagctttga aaaaatcttt tgaagtttat catcaaagtt ttgcttttaa
     6121 tactttaatt gcagcttgta tggaagcttt aaatgcttta gcactttgta aaaatgaagc
     6181 tttggagcaa gaggcttttt atattatttt aaatatttta gagcctatta ttcctcatgt
     6241 ttgttttgag cttagcgagg agctttttaa atgtaaaaat ttcaaaaaat tagaacttaa
     6301 agaagaggtt tttgtaaaag atactttaaa tttagctgta agtattaatg gtaaaaaaag
     6361 ggctgaattt gaaatttcaa gtagtgcgag caaagaagaa attttagctt ttgcaaaaga
     6421 aaatactgct aaatggcttg aaggtaagag tatagttaaa gaaatttatg tggaaggaaa
     6481 gctagttaat ctagtgatta aatgaaaaag attttaattt tttgtatagg tttattttta
     6541 ggtgcttgtg gatatattcc tacatcaaaa atcgctaata atattttcga tgagaaggtt
     6601 tatgttaatg ttgaattaag tcaacaagac ccaaaaaata gtatctatgt tgccgatact
     6661 ttaaaagaaa tggtaatttc aaaattaggg cgtaaacttg ctttaaaaca cgaggcagat
     6721 gatgtaatta atgttaaaat gaataattta gaatttattc ctttagctta tgataaaaat
     6781 ggctatgtta ttagttataa agctaaatta aatttagatt ttaatgttgt ctttaaagat
     6841 ggttcaagtc aggcttttag tacaagtgga agttataatt ttgaaatttc tccaaatagt
     6901 attattagtg attctgcaag gtatgaggct attcgagcag cttcaagcga ggcatttgat
     6961 gagtttattt ccgtaattgc tattaaaggg caaaaacgtg attccaaata ctaatgaaat
     7021 agcaaagcaa actttaattg cattaaaaga aagaaaacta aaaccaactc ctgaaaatta
     7081 tacggaaatt tttgaagaat tatctttaaa atatggtatc acaagctcaa ataaagctaa
     7141 acttgacaaa tacaaaacct tgcttttgcc gatttatcaa caagaattaa attctaaaac
     7201 tataagaagt ttagaagaac taattagttt tttaatttct gttttaaata gacaaagcgg
     7261 aaaacaattt agtgaatttt ttgatttttt atataccata tctaaaactt tgcaaataag
     7321 taaggataaa aagataagag atttggctaa ggtgacttcg attagaattt ctaaaactat
     7381 ggatagtgaa agtatttact tgcttactaa aaaatggaaa gagcttgaaa gaaattatga
     7441 tgaaaatgac ttagaagaac aagctcgtaa atatggcatt agtaaatatg atgattatga
     7501 tagcgtgatt aaaaaactct tagtcaagct tgaagagcgt agttatgagc actttagtga
     7561 attattatgc ttgggtttaa atccttcatt ggtagaagat ttaaaaattc aaggttttat
     7621 acaaaattta acacaaaagc cttttgtaat aggcgaagaa aattttaaaa atgaactaat
     7681 ggaatttata aatcatcgca taatggttga taatatgtat gtccaaaaaa atttaaattt
     7741 ttttaacgat aatctaaaaa aaatctatga attgcttgtc ttacttaata aatcgaatga
     7801 aaaaaatatg gattttatca ataccttaaa accagatgaa aatggggaag taaaacttag
     7861 ttttgaggat ttaaaactaa aatttaaaca acttggagaa aaaattacat ctttaaataa
     7921 tcaaattgaa ttcacgcaaa gcttagaaga gagagaggct tggagtgttc ttaaagagct
     7981 tgataaaatg gatgaaaatt ttaataagta taaagttaat tattctttag ctttattttc
     8041 tatagtaaat taccgtttca ttatggaaaa atatggtatg ggaagtttga atgaaatttt
     8101 tgttcgattt aaaaaaattt taaaagattc ttgtagtgaa tttgatgaac tgtggatgat
     8161 agatgaaaag agttatttga ttgtttcgcc aggaaaaagc aaagatgaaa ttacacagct
     8221 tgtaaataca aatcttaaaa ctatagaaaa ttttagattt atttataagc aagatattat
     8281 aactcctaaa attcacgtgg cttatcttga taagcaaagt aagccaagta ttaatatttt
     8341 agatgagtta ataaagcaaa ttgcagcggt taatgaacaa cataatgaaa gttgagaatt
     8401 ttttagctca aaaaagtata aattacgata aaattgatcg ttttttgatg tttagaatgt
     8461 atgaaaaata taagaaatat tttaaaaata ttcctataat ccaacttata ggcacaaatg
     8521 gtaaaggtag cacgggtaga tatttaaccc aacttttaga aaatttaaat tataaaatag
     8581 ggcattatac tagcccgcac attttcagtt ttaatgaaag attttatctt gatggtaaga
     8641 ttgcgaatga tgaagaatta gaacaagctc atataagact tgaagaaatt tttaaacaag
     8701 acttgcaaaa attaagttat ttcgaatatg ctactttttt agctatgatt ttatttcaaa
     8761 aatgcgattt cattgtttta gaagcaggag tgggtggaga atatgatgct acttctattt
     8821 ttgaaagaag aatgagtatt tttacaagaa ttggatttga ccatattcaa attttgggca
     8881 attctttaga agatattgca agaaccaagc ttaaagttat ggcacctata gcacttataa
     8941 gtgatgagca agagcaaaat gttttaaatt tagcaaaaaa aattgctttt ttaaaaaaag
     9001 ctaatttgca agtttcctcc ttaaatcctt ttttgaaaga aaaatttgag atttattgta
     9061 aaaagtttgt tttaccttat tttttaaagc ataatttaaa gcttgcatta aaggcttgtg
     9121 aaattttaac ttcgcaagaa aaaaccttag aagctttaaa aaagttacaa gagttaaatt
     9181 tacaaggaag atgccaagaa atttctccaa atttttttgt tgatgtgggt cataatccca
     9241 tggctgctaa ggccatgctt gataaatttc aaggagaaaa aataaatctt atttataatg
     9301 cttatttgga taaggatatt tttcaaattt taaatacatt aaagcctatt attgatacaa
     9361 tacaaatata taaatataaa agtgcagaac gaaagctggc cgatgatgaa atttatagta
     9421 ttgcatcaaa gctaggcatg caatgtaaag aatttgtaaa attagaagag aataaaaaaa
     9481 atctagtttt tggttctttt atgctggtag aaaatttttt aaaggagtgg tgtggtaaaa
     9541 aataaattca ctattaccat tacagatatt aacggttcaa gacattttta tttaaatcaa
     9601 ataatcaaaa aaatagtttt ttatattatt gcttttattg ttttattttt agtttttagt
     9661 ggtttttata tcaaatatct cgatagcaaa cttagtgata tcagtgaaaa gcgtgaggag
     9721 cttttgaaaa aaagcaaaga attggaatta tctaattcgc aaatgcaaaa aagcatagaa
     9781 gaaaaaactc agcagtatgc agctatagaa gataaaatag cttcttttga agaggctttg
     9841 ggcttagaag cagaaaataa tcttacaatt agtgcaagac ttgataatct tcagcttacc
     9901 aatgagcagc aacttggaat tttggggcaa attcctaatg gatggcctat tgaaaataaa
     9961 ggcattacag gaaattttgg ctggagagag catccgcttt taaaaagaag ggaatttcat
    10021 cctggtattg atttaagagc agaaattggt actcctattt atgcaccagc aagtggagta
    10081 gtggaatttt caggttatag tgataatggc tatggctata atgtaatttt attgcataat
    10141 tttggtttta aaacagtatt tgctcatatg atgcgcaaag aagtggtcaa agcaggtcaa
    10201 tttgttaata aagggcagtt gataggttat agtggcaata caggtctttc tacggggccg
    10261 catttgcact atgaggtaag gtttattaat aaaactttag aacctttgta ttttttaaat
    10321 ttgcaaagaa aaaatatgaa tgattttttt aatcaagaaa ggagagttcc atggcaatct
    10381 ttaataaagg cggtatcagc ccaacatcca gctctagctc agaaacaaca gtaatttctt
    10441 caggtgcgag aattgagggt aaattttatt ttgcttctat gcttcatgtt gatggagagt
    10501 taagtggtat tattcattct gaaagcattg tggttatcgg aaaaaatgga aatttaaaag
    10561 gtgaattaca agcagataaa attgtagtaa atgggtgttt tgaagggcaa cttgaggcta
    10621 atagtttaga aattttagcg ggcggagttg ttaatggtga tatttcaacg caaaaaattt
    10681 ctatagaaaa tggcggtcgc tttaatggaa ctagtaaaat taaagaagat actatcaaac
    10741 ttattgaaaa taacaacgaa gaataatgca agcttcattt tatgaatact tacaaaatcc
    10801 aaaaatttgt gaactttttc tttgtaaaga tgaaaaacaa gcagatttac tcgctcaagt
    10861 ttcacgattt aagggtttaa aaacctttgt tttacctgat tttagagcgc agtttggaga
    10921 tgatttaagg gctttttcta aagaactttt tgatctttgt aagattttaa atgcttatca
    10981 taaagaagaa gaaaaaaaaa tccttatttc tcctttaaat actgttttaa aaaaacttcc
    11041 ttcaaaaaaa catttacaaa attatcatat cgataaaaaa caaaattttg atttgaaatg
    11101 ttttgaagat gaaatttcaa gattgggata cgaatttgta gatatagttc aggataaagg
    11161 tgaaatttca attcgtgcgg atattattga tattttttgt atcaatgaag aaaatcctat
    11221 tagaatttta ctttttggcg aagagattga aagtataaga tattttgatt tgcaaagtca
    11281 aaagtctatt cctaacgaac tagaacattt tgaaatttgt ccttttttaa aatattttga
    11341 caaagaaaat tatgaaattt ttaaggacaa attagaagat tttcaaagcg atgctttaat
    11401 acatgatatc aattctttag gcttttggtg tattgatgat ttttttgatt atttagaact
    11461 tgatttttta gcttgtgaaa agtttgatat taatgaatat gaaaaagata taagttttgt
    11521 gaatgcaaaa attttacctc aagctaaaaa atttaaagaa ttgcaaagtt cttacaataa
    11581 agattttttt gaatttcata aaaataaaaa aatcacactt ttagctaaaa acgaagcttt
    11641 atttaaagct ttagagcttg aagatactca aaatatccat tttgtaaaaa gtgatttaag
    11701 gcttaatctt attagtcctg aagagctaat tatttcttta aatcaaaaag aaaaacaaaa
    11761 aacaagaaaa aaagctagtt tgattataga tgagcttaaa aatggggatt atatagtaca
    11821 cgaagattat ggggtaggta aatttttagg tcttgagatg atagtgataa gcggagcaaa
    11881 aaaagagttt gttgctatag agtatcaaaa ttctgataag cttttattac cagtggaaaa
    11941 tctttatttg attgataaat atttgggcgt gagtggatct attccaagct tagataaact
    12001 aggtaaaaca agctttatta aacttaaaga aaaattaaag actaaacttt tagccatagc
    12061 ttctgaaatt gttattatgg cggctaaaag atctttggtg caagcaaaaa aaattacagt
    12121 ggatttaaat agacagactg attttatagc tagtgcgggt tttatttata caagcgatca
    12181 agataaagcc tgtcatgaaa ttttgcaaga ttttcaaagt ggaaaagtca tggataggct
    12241 tttaagcggt gatgtgggtt ttggaaaaac agaagtcgct atgaatgcta tttatccagt
    12301 agttaaaagt ggattttgcg catttttatt tgcgcctacg actttgcttt ctcatcagca
    12361 ttataaaacc ttaaaaaagc gttttgatcc ttttgatata aaggttttta aactggatcg
    12421 ctttacaagt agtgcagaaa aaaaacaagt tttacaaaat ttaaaagaaa ataaagcttg
    12481 tgtagttgta ggaactcatg cacttttaag tgtagaatgt gaaaatttag cccttgttat
    12541 tattgatgaa gagcataaat ttggagtgaa gcaaaaagaa aagcttaaag aaatcactca
    12601 aaattcacat attttatcca tgtcagcaac ccctatacca agaagcttaa atcaagcttt
    12661 aagttctata aaatcttata gtgttttgca aactccacca gaagatagaa tggatgtaag
    12721 aacttttgtc aaagaaaatg atgacgcact tttaaaagaa gctatagcaa gagagttaag
    12781 acgtggtggg caaatttttt atattcataa tcatattgca agtatagagc aatgtaaaaa
    12841 gcatctatta gaactttttt ctactttgcg tattttgatt ttacattcta aaatcgatgc
    12901 caagatgcaa gaagaagaaa tgttgaaatt tgaaaacaaa gaatatgatt tgcttttaag
    12961 tacctctatc gtagaaagtg ggattgattt accaaatgca aatactatca tagtagaaaa
    13021 aagcgatcgt tttggcatgg ctgatttgca tcaattgcgt gggcgtgtag gaagaagtga
    13081 taagcaaggt tattgttatt ttttaattga agataaaaat gctatcacaa aagatgcttt
    13141 aaagcgtcta gtttccttag aaagtaattc ttttttaggc gcaggttcta ttttggctta
    13201 tcatgatctt gaaattcgtg gcggtggaaa tttattaggc gtagatcaaa gtggacatat
    13261 tgagcaaatt ggatatagtt tatatcttaa aatgttagaa gatgaactta atgctttaag
    13321 taaaaatgaa gtggatcaaa aagaaaataa acttgattta aaactcaatg ttaatgcctt
    13381 tttaaacagc gaacttatca gcgaagatcg cttaagatta gaactttata gaagacttag
    13441 caagtgtgag caagttcatg aggtttatga gatcgaaagt gaaattgaag atcgctttgg
    13501 aaaacttgac atttatacta agcaattttt atctttgatt actattaaaa ttttagcttt
    13561 aaataaattt aaaagcatta gtaactatga gcaaaatatt caatttactg ctttaaatga
    13621 tgaaaaagaa ctcatcaagg caaaaagcaa agatgatgat gatattttag aggcaatttt
    13681 aacgcattta agaaaggctt aaaatggatt ggaataaaac ttatgcagca atttatagag
    13741 caagaaaaga ttatttaaag cctatttttg aaatcgatcc tattgcttta aaagatttag
    13801 taggtatgga aagtcaaaaa aaagcacttt atgaaaatac tttaaatttc attcaagata
    13861 agggagcaaa tcacgcactt ttatggggat ctaagggcac tggaaaatca agtttaatta
    13921 aagctatatt taatgaattt aaagaacagg gcttaagact tgtcgaatta aataaagaag
    13981 atttatttgc cttagcagat atcatcgatg aaatcagatt agaaaatttt aaattcatac
    14041 ttttttgtga tgatttttct tttgaaaagg gagatgatag ttataaattt ttaaaacctt
    14101 tacttgaggg aagcatagaa aaagccccaa ataatgtaat tatttatgcg agttcaaatc
    14161 gtaggcattt attaagtgaa agcattactg ataatcttga tacgcaaatc acacatacag
    14221 aacttcattt aagcgatgct gctgaagaaa gattaagttt gagtgataga tttggtttgt
    14281 ggttaagttt ttatcaggga aatttagaag agtatttaaa gatgatagat ttttatttta
    14341 aagattattc ttgtgataaa gagcttttgc acgctaaagc taaagaattt gctactctaa
    14401 gagcaagtag aagtggtcgt accgcaaagc aattttattt agcttttaag gagaatttta
    14461 aatgactgga gcacaaattt ttaccaagct tttaaatttg gatttaaatt atcatgattt
    14521 tgattggctt gaaaatcaag gattgagtga atttgagctt ttaatttctg tcgttttaac
    14581 tcaaaataca aattggaaaa atgtcttaaa agctttagaa aatttaaaaa aagaaaatat
    14641 tgcaagctta gaacaaatca atactttatc caatttagaa cttgcaactt taattaagcc
    14701 tagcggattt tataatacca aaactaagcg tttaaaaggt ttggtagaaa gtatcataaa
    14761 cacttatgaa aatttagaaa attttaaaac aaatgcaagc agagaatggc ttttaaatat
    14821 caaaggttta ggttttgaaa gcgttgatag tattttaaac tatctttgca aaagagagat
    14881 tttggttgta gataattata gtttgcgttt ggctttttac ttaggttatg agtttgaaaa
    14941 ttatgaagaa ttaagagaat tttttcaaag tgacatagag agtgagcaag aaaatttgta
    15001 taaaatttta ggaaaaaaat gcgaacttta cgaactttat caaatttttc atgctttgat
    15061 tgtagctttt gcaaaacaga gttttaaagg acaaaaatta agccctaagg gtgaagaatg
    15121 gattaaaatt ttaaaggaag atttatgaaa gcaaaaggaa gcgaacttat acctgtttta
    15181 actatagcag gaagcgattg tagtggtgga gcggggatac aagccgatct taaaaccttt
    15241 agtgcgcaca atctttttgg tatgagtgtg gttttaagtg tagtagctga aaataccgca
    15301 agggtgattt ctgtacacga tatacctact caaagcgtag atgaacaaat gcttgccgta
    15361 tttgaagata tagtgccaaa ggcaactaaa atcggaatga taggttcttg tgaattaatg
    15421 agctgtgtag ctaaaaattt aagcgagttt aaacctcaaa acatagtgat cgatcctgta
    15481 atgtttgcta aaaatggcta tgctttaatg ccgcaagaaa attgtgattt tttcaagcaa
    15541 accatagtaa aatttgcaga cattcttact cctaatattc ctgaagcaga gtttttatgc
    15601 ggttttaaga tcgctaatga agagcagatg ataaaagcag ctaagcattt atgcagcttg
    15661 ggggctaagg cggttttact taaaggcgga catagtgaaa taaatgccaa tgatgtgttt
    15721 tatgatggaa aagaaattta tattttaaaa ggcgaacgca tagaaactaa aaatactcac
    15781 ggtacaggtt gtacgctttc ttcggctatt gctagtaatt tagctaaggg caaggattta
    15841 tttcacgctg ttagtgaagc taaagagtat gtaagaaatg cgatttatta ttcacttaat
    15901 cttggaaaag gttgtggtcc tacaaatcat tttttcaagt ttctagatga aaaataaatt
    15961 agatcttagc ctttatttgg ttgctactaa gggaagtaaa agcgaggagt gttttttaaa
    16021 tactttagaa aatgctataa aaggcggagt aagtatcata caacttcgtg aaaaagagct
    16081 taatgcaaga gaattttata aactaggctt aaaggtgcaa aaactttgca agtcttataa
    16141 aatacctttt ttgattaacg atagggtgga tatagcttta gccttagatg ctgatggggt
    16201 gcatttagga caggaagatt tagaagcaaa attagctaga aagcttttag gagatgaaaa
    16261 aatcataggc ttaagtctta aaaagttaga acaacttgag tttatacaag gagtaaatta
    16321 tctaggttgt ggagctatta aggcaacgcc tactaaagaa agttcgcttt taagccttga
    16381 gcttttaagt caaatttgtg ataaaagccc tataggggtt gtagccatag gtgggattga
    16441 caaagaagca cttgttgagt taaagggtat aaatttaagc ggtgtggctg tggttagggc
    16501 gatcatggat gctaaagatg cttttttggc agctaaagag ctaaagcgta aaatctatga
    16561 aaatttatct cttaaatgaa actccttttg aaggggtgga aaatcttatt ttaaatgaga
    16621 ttgtttttta tgattttagt gtggatttga gtttgtatga tgctttaatc tgcacttcaa
    16681 aaaatgcttt aaaagcttta caacatgcaa aaatcacttt aaatttcaaa ctcaatttat
    16741 acgctgtggg acaaagtaca gctcaatacg ctaaaaattt aggttttaaa aagattaaaa
    16801 ttccatcaaa ggcttatgga aaagatcttt ttcttgaatt taaagaggag ttaaaaatgc
    16861 aaaaatgttt gtatctaagg gctaaaaata ttgtttcaac tttaaatttg gatcttaaaa
    16921 atgtaggtgt ggatttagat gaaatgattg tttatgaaaa tgtttttaaa aaaggcgaca
    16981 aaaagcttat ctatcctgct atttttatat tcacctctcc tttaagtgta gaaaattttt
    17041 taaaatttta tagcttaaaa gaagaagata aggttgtagt tatagggcaa agcacagcaa
    17101 agaagctttt aaattttaaa aatctttata tatgcgaaaa tcaaagtctt ttagactgtg
    17161 ttaagctcgc taagactttg gtttaatttt ttaaattcca aaaattttct ttgggataaa
    17221 taataatgct ttttgtgagt aaaatttcat cattgacgtt tttatcacga tttaaagcaa
    17281 tactaatgtg ggctatgata acaccatctt tgtttaaatt tgcatcggga ttgaagttgg
    17341 aaaatttaaa attaacacat tgtgcaatag gataaaaata ttttatttta atcaaagctt
    17401 ttgtgtaatt aaaatatata ttatctaaac attctttatt ttcttgcctt gcttgatata
    17461 aaaaatattt agaaaattgt gttgcattat gacttaaaat ttgagcttga aggtagtaat
    17521 aactatcttg gattattttt ggagtatagc tggatatgtt taaggtcaag ctcatccata
    17581 gacttattag tagtattaaa aaaattgtcc aaattaaaac ataagctttt ttcatagtaa
    17641 aattcttttt ttaagacaat attttgtttg tctttttaga caaattttta atttattgtt
    17701 ttgcaggtta aatgagctta tgtttttaga aatcaatcct tgttggctta attgttcatt
    17761 aaattttggc tttatttcat atataagttc ttcattttgc aatttgataa ctaattgagc
    17821 ttgcaaagga ataaaactgc ctgtaaaatt tgcagatata ccattttcca agatagatat
    17881 tttttcaatc ttattaattt tataagcata gctaatatgt tcattgtcgt tatataaatc
    17941 ttttctattt tggagttgtg ttttaaaatc agaatgaggt gaataaagtg tatgattatt
    18001 ttctaaaata agagcagaat taataagata aagtttatta tcttttaggc taattaactc
    18061 atcttttaaa agacatttta atgtattttg tgaaaatgta atattaatac aattttgtat
    18121 taatttttct attttaagca agtttaaatg tgcttgagtg ataagattgt ttgtatgtaa
    18181 agcagtgaaa tttaaatgat aaaaatccat taaaggtttt gaaagtaagc tagttataaa
    18241 agtaaaaagt attagtgata ttataagttc aaaaagtgta aaagctttgc tcattcttta
    18301 aaataaacgc tataattttg atcttgaaag tataattttt gaaattgaaa tataccatca
    18361 ttaacaaact gttcttgtaa aactataggt tttaaggctg aagtttgaag tatgatggtt
    18421 ttaaaaatgg gcttttcata taattcttct tgaagtttat agagtctttc aaaaatattt
    18481 aaattttcat agtttttgta aagttgagta tagtaataaa aaatgccaat gaaaattaaa
    18541 gatatgatcg ttatagcact aatactttct ataagtatga aagccttttt catttagcgc
    18601 tgctagcatt tatggcttca aaaaaacttc cgcgaattcc tttttgttcg agtattttta
    18661 tgccttttat tgtaactccg ccaggggagc aaatattttc tttgataata gctggatgtt
    18721 catgttctag taaagcacta gagcttttaa ataaagagcg cgtaagattg agactaagtt
    18781 cttttgacaa accttcataa actccagcat tagcaatgct ttccgctata agtgctaaaa
    18841 aagcaggagc gcagccgcta atcgccatag ctgcattcat ttgtatttca ttatctaatt
    18901 tataagccga gccaaaagtt tttaaaatgt ctaaaatttc attttcaaaa tgagagtttt
    18961 taagtatata tggtgtggtt gaagccttat atttagctgc tgtattgggc attattctaa
    19021 cataattttg agctttgatg gtttgtagtt tttcaaaatc aacattggct aaaacagaga
    19081 ttaagatacg tgcttgtcct tttagcattt gagcaatatt ttctaaagca tagggtttaa
    19141 atgctaaaat aacatcttta ccttctatgt taaaatcttt gtaaagtaag gttttaaagc
    19201 cttctttggt gagggcttga agtttttcta tacttcttcc tactatacaa atttcataat
    19261 catcttttaa tccataggct aaggctgttg ccatagctcc atttgcaagt atatagagca
    19321 ttatttttta atataattag caatttgatc agcttgaaaa aagtccggat aattaactgt
    19381 atctagtatc acttgtacca tagtattatt atcaagatta atgactactg gagctagaaa
    19441 attcactgtc gattcttcaa tgctttttgc tatggctact atattaaaaa ttttcatatt
    19501 agattcaggt gttaaagaaa gaagctcttg ataataagtt ggtatatcaa attcataatc
    19561 aggtctaatc aaataaggat taattaaaac aaaagaaaag tctttaccat caagactttt
    19621 aagtcttaca aatacttcat cgatagttga aaattccata tttttggttt cttcaaaacc
    19681 taagataggg catttaacag ctagggtcat gttttctcct caagttataa tgtttaatat
    19741 tttaacataa aataagcaat aatcattcca a
//
LOCUS       DAPIWV010000018        19328 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.019, whole genome shotgun sequence.
ACCESSION   DAPIWV010000018 DAPIWV010000000
VERSION     DAPIWV010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19328
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.019"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            17..772
                     /locus_tag="RJ272_000450"
     CDS             17..772
                     /locus_tag="RJ272_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7381573.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(796..1435)
                     /locus_tag="RJ272_000451"
                     /pseudo
     CDS             complement(796..1435)
                     /locus_tag="RJ272_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
     gene            complement(1432..2421)
                     /locus_tag="RJ272_000452"
     CDS             complement(1432..2421)
                     /locus_tag="RJ272_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381574.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2425..3204)
                     /locus_tag="RJ272_000453"
     CDS             complement(2425..3204)
                     /locus_tag="RJ272_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7381575.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVSPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNMGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILIGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3205..4044)
                     /locus_tag="RJ272_000454"
     CDS             complement(3205..4044)
                     /locus_tag="RJ272_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7381576.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLAITFIANFLSKKYNF
                     KVL"
     gene            complement(4041..4851)
                     /locus_tag="RJ272_000455"
                     /pseudo
     CDS             complement(4041..4851)
                     /locus_tag="RJ272_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
     gene            complement(4848..6173)
                     /locus_tag="RJ272_000456"
     CDS             complement(4848..6173)
                     /locus_tag="RJ272_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HDV7381577.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6184..7230)
                     /locus_tag="RJ272_000457"
     CDS             complement(6184..7230)
                     /locus_tag="RJ272_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDV7381578.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDIGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7347..8330
                     /gene="corA"
                     /locus_tag="RJ272_000458"
     CDS             7347..8330
                     /gene="corA"
                     /locus_tag="RJ272_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDV7381579.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8351..8893
                     /gene="mog"
                     /locus_tag="RJ272_000459"
     CDS             8351..8893
                     /gene="mog"
                     /locus_tag="RJ272_000459"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDV7381580.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAMCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8890..9075)
                     /locus_tag="RJ272_000460"
     CDS             complement(8890..9075)
                     /locus_tag="RJ272_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HDV7381581.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            9203..10390
                     /locus_tag="RJ272_000461"
     CDS             9203..10390
                     /locus_tag="RJ272_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7381582.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGVIIMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPILNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            10387..11202
                     /locus_tag="RJ272_000462"
     CDS             10387..11202
                     /locus_tag="RJ272_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDV7381583.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIKI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFNIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELELKITACDINPKALELALENAKLHKVDHLIDFKL
                     CHFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            11215..11685
                     /locus_tag="RJ272_000463"
     CDS             11215..11685
                     /locus_tag="RJ272_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HDV7381584.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFKIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENTTKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            11724..12473
                     /gene="flaC"
                     /locus_tag="RJ272_000464"
     CDS             11724..12473
                     /gene="flaC"
                     /locus_tag="RJ272_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HDV7381585.1"
                     /translation="MMISDATIMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            12508..13140
                     /locus_tag="RJ272_000465"
     CDS             12508..13140
                     /locus_tag="RJ272_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDV7381586.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(13152..16754)
                     /gene="dnaE"
                     /locus_tag="RJ272_000466"
     CDS             complement(13152..16754)
                     /gene="dnaE"
                     /locus_tag="RJ272_000466"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDV7381587.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGIIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGTKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            17004..17189
                     /locus_tag="RJ272_000467"
     CDS             17004..17189
                     /locus_tag="RJ272_000467"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381588.1"
                     /translation="MAEELQSDFKDVEVEFEIGGRGDFIVEVDGKVIFSKTQLINCES
                     ERFPYQNEINQLIKNRV"
     gene            complement(17202..17531)
                     /locus_tag="RJ272_000468"
     CDS             complement(17202..17531)
                     /locus_tag="RJ272_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HDV7381589.1"
                     /translation="MKFYGIKNCNSVKKAIDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(17528..18868)
                     /locus_tag="RJ272_000469"
     CDS             complement(17528..18868)
                     /locus_tag="RJ272_000469"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HDV7381590.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(18892..19305)
                     /gene="uraH"
                     /locus_tag="RJ272_000470"
     CDS             complement(18892..19305)
                     /gene="uraH"
                     /locus_tag="RJ272_000470"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HDV7381591.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         6815 a         3259 c         2597 g         6657 t
ORIGIN      
        1 atatcaaagg aaaaaaatga aaaaaatatt aagcattgct ctagttgctt tagttggttt
       61 atttttaggt gcttgtagtg attctaaaaa taaagaatca aatgcaagtg tagaattaaa
      121 ggttggaact gctccaaatt ataaaccttt taattataaa gaaaactcaa aacttacagg
      181 ttttgatact gatttggttg aagagattgc caaaaaaaat ggtattaaaa ttgtttgggt
      241 tgaaaccaat ttcgatggat tgattcctgc cttaaaagct ggcaaaatcg atatgattgc
      301 ctcagctatg agcgcaactg atgaaagaag acaaagtgtt gattttacca aaccttacta
      361 tatgagtaaa aatctttatc ttaagctaaa aaacaacgac tctcttcaaa caaaaaatga
      421 tttagaaggt aaaaaaatag gagttcaatt aggaacttta caagaaaata ctgcaaaagc
      481 tatcaaaaat gcacaagtac aaagcaataa agatttaaac atagctgttt tagcactaaa
      541 aaacaacaaa attgatgcta ttgtagctga tcaagatact gctaaaggtt ttttagctga
      601 aaatccagaa ttggtaagtt tctaccaaga aacagatgga ggagaaggct ttagttttgc
      661 ttttgataaa aataaacaaa aagatattat tgaaatattt aacaaaggca tagatgaagc
      721 aaaaactgat ggattttatg atactttaat taaaaaatat gaattagaat aagcgtgaat
      781 tttcacgctt atagcttaaa aagttaaaat ttcatatttt ctctcttttg caatttttaa
      841 aattttttca tcgccattac atacaaaggc tttgctaaca gactctagta aaggtaaatc
      901 attgatagaa tcactaaaaa aataagaatc tttcatccat ttttcataat ctttacccaa
      961 atattcctta agtcttaaaa ccttgccttc cttaaagcta taaatcccat aagcttttcc
     1021 actaaattta tcacccacac gctcgcattt tatggctatg ctttctctca ctcccaaaaa
     1081 agaggcgatt tttctaacta aaaattcagc cgtagctgaa attataatac acctttgatc
     1141 ttgatatttg attataagtt ctttagcttt ttcataaggt tttatataaa tttttataaa
     1201 ttcatctact aaagatgaaa ttctatcttc atttttaccc ttaacacttt gaagaaaaaa
     1261 aagtcataaa ttcatccata tcaagctttt tttcttgata ttgtttttga taaaaaacga
     1321 ttttttctaa atattcttga ggtaaaaaac ctttttcaac acaaaattta agccaaagtt
     1381 tagcactatc gccttgtatt aaagtatcat ctaaatcaaa taaaacaagc ttcattttaa
     1441 ctcttttgct aaagaaagat tgaattttaa agcgatttta tcacctgctt cataagtact
     1501 atgagtgcta aaatttaaag tatctacctt aaattcaatt tcttgcactc taaccctata
     1561 gcgtatgata ttacctagca atgatttttc tttgatctta gcctctaagc cttcgttaga
     1621 aatttctatg gtttcaggac gcaaggctat atctttttta aaatcgtgtt ttaaacccaa
     1681 gctatcaagc tctttagggc ttaaaatatt gtaatttcct ataaagctag ccacaaaatg
     1741 agattctggc aaaagataaa gattgtttgc gttggaattt tgtatgattt taccctcatt
     1801 cattaaaata atcctatcgg ataactctaa agcttcttct tgatcgtgcg ttacaaaaat
     1861 agtggtgagt tcaagttctt tttgaatttc tttaatttgc acccttaaat gcttacgaat
     1921 tttagcatca agtgccgata aaggctcatc aagtaaaagt aaatcaggtt tagtcaccaa
     1981 agatcttgct aaagccactc tttgcatttg tccgcctgaa agcttatgtg gataagtttt
     2041 agcgtattct tcaagctcga cgagttttaa catttttttc actctttttt ctatgtcctt
     2101 tttatccatt tttttgatct ttaaaccaaa agctacattt tcaaaaacgt taagatttgg
     2161 aaaaagagcg taattttgaa aaaccatacc tatatttctt ttttgaggac ttaatttggt
     2221 aagatcttta tcatttaaag aaatttttcc tccattaatt tggctaagcc ctgctataca
     2281 ccttaaaaga gtggattttc cacagccact tgggcccaaa agggttataa actcaccctt
     2341 tttagcacta aaattaatat cttcaaaaat aattttatcc ccataagctt ttttaaaatt
     2401 tttaatcttt aaataagcca ttttttactc cttaatcaaa ctagctataa aagttgttat
     2461 aaaaattaac acaaaataaa ctattaccaa agcactagaa taatgcccac tttgattttt
     2521 gatattataa agataaactt gcaaagtctc ataagcactt cctataagaa tatttgcgta
     2581 taaaaattcg cctattaaaa aagaaaaact taaaaaaact gccaccaaaa ttccatttct
     2641 taaattaggc aagacaagct taaaaatcgc tcccattaaa gaacctccaa gcatagcatt
     2701 agatgcgatg agttcattta aattgacatt agacatagca ttatctaaag ccctatatat
     2761 aaaaggcaaa gctatagtaa aataagtaaa aatgagtatc caagctgtgc ctcccatatt
     2821 gtcagcataa agttgcaaaa gccctacaca gctaactata ggaggtacag caaaaggcat
     2881 gataataagt atatttacaa aggcttttaa ttttaaaaaa taataattta gcacaaaaac
     2941 caaaggggaa acaagaatca cagaaagtaa aatactgccc acacaaacaa gcaaagaatg
     3001 ccaaagagca agtaaaaatc tttcatcatg aaaaagttct tgataccatt taagcgtaag
     3061 atcatcaggc aaaacactta caccccaaga agtggaaata gaatataaaa aagtagccat
     3121 taaaggcaaa gctaaaaata aaaaaaccaa aaacaaaact gcataatgat aaattttagc
     3181 ttttaaactc aaattttcat tcatttaaag caccttaaaa ttatattttt tagaaagaaa
     3241 attggctata aaggtaatag caagcatgat aatagttata atgatgctta aagcactagc
     3301 catataagga tcaagattga tatcgcctgc gattaaagca gcgattctta caggggcgac
     3361 attaaaattt cccgaactta aagcataaat agtcgcataa gctccaaaag cattggcaaa
     3421 taaaatcaca aaaacaccaa acaaagcagg agcgagcaaa ggcaaagcta tttttaacca
     3481 atataaaaaa ttgcctccac ctaacatttt acaagcattt aaatgtgaat tttcaagact
     3541 tttaaaagct ggaagcaaaa gcaagattgc caaaggaatt tgaaaataca cataaacaat
     3601 atttaccccg aaattagcat aaacactaac aaaaggctct atgcctaaat ttttcaaaaa
     3661 cacattaact acaccattgc ttccaagaac tataatgaaa gcaaaagcta aaggaactcc
     3721 tgaaaaatta cttatcatag tatttaaaga aaaaagaaat ttacatattt ttgatggagc
     3781 taaaacaaat aaagaatagc tcgccaaaag ccctattaaa agtccaaaaa tactagaaat
     3841 aaaactgatt tgtaaagaat ttataatgct ttgtagatag aatttggact caaaaatatg
     3901 tataaaattg gctaaagaat aaatttcatc ctcttctaca taaaaagcat taaaaacaat
     3961 ccaaatcaaa ggtgctatca taaaaaaagt aaaaactata aaaaaaggta aaatacttaa
     4021 aaaggctaga aatttttctt tcattttctg gcctttaaaa tttcatcatt atatctctta
     4081 tcgtgtttaa gtcctaaaat ttcacagaca ctgccacaaa tttcatcctg ttttatctta
     4141 gcattttcat acgaaaaagc actaccaaaa gtgaaaaaag gcactaaaat ttcatcttcg
     4201 cttaagcctc catgactttt accctctgtc ataccatgat cgcttgtgat gattacatta
     4261 ataccttgtt ctaaccaagt aggcaaatac tcagaaatca aaacatcaac ttttttggtt
     4321 ttattagcat actcgataga gtgtgagcca aatttatgtc ctgcatcatc tatattcata
     4381 gagtgtataa gagtaaaatc tagattatat ttgtttctta aatgctcccc atctgcaaat
     4441 aaatgagaat ctaaataatc atcttcataa taaaaatgtc cataaggtaa agttaaattt
     4501 tcatcttcta tatggcgatg taaagaagga ataaattctt ttttattata aagctcaaaa
     4561 acccaatgat aagctgcgcc tccagctttt aagccttgtt ctttgcaaag gtcaaaaatg
     4621 cttgtttgtt ttgaaaaact cgatttatta ttaattatcc cacttaaaac aggctttacg
     4681 cctgttaata agcactcgta taaagggacg agacatacta ggaagttcgc attctaaaga
     4741 ataaaatttg cctaaattct ctttgcaaag tgcattcaaa tatcccatat ttatactagt
     4801 gcttttacaa tttaagccat caagcacaac taaaataact ttggacatca tttactcttt
     4861 aaaaaatctt ttacttcaag caaaataaac tcattatcat cagtcttatt aggttctcta
     4921 cttgaagaat aaggaaagtt attgtcattt tctacaacta tatgagagtc atctactata
     4981 tccacacctt ctatggtttc aaaaggaaaa acaaatttat catttaccaa aggcttttta
     5041 gaaattttat ttctatcctt aatatttaaa agatctatat aagaaatttt ttgagcttca
     5101 tgagttttat catctaattt aaccttataa attcttttaa attgagctac attattaaaa
     5161 caatgcttag tatcttcacc ttctttgcaa gccttatctt tagtgccttc tttttgatct
     5221 ctttctatga tgatgccgta tttatcatct atcatattaa aatcacctat ggaatggctt
     5281 ttatcttcta agaaatattt ataagttttt ccggtgaatt ttttattttt tacatcaaat
     5341 tctatgattc ttagatattc tttacctttt tcattctcat aagcgttgtt attataaatg
     5401 cttccttcta aaagcaaata aagtttagaa ccatctttag agcttgccat agcttcaaag
     5461 cctttagaac gcttgatatt aaatttctca ttttctccat caggcttatc gctaaatttt
     5521 aaacttggat tatcaggaga aataagtttt ttaccctcca catacacatc aaaaacttct
     5581 ttcaaattcc cattcttatc aaaatgaagc aaataaggac caaattcatc acctatataa
     5641 aattcatcat tgataacctg tatactctca gtatcaaaat cagccccact taaatacctt
     5701 tctttagttg tttcggtggt tataggatag gggtattttt tatcactatc tttaaaaaaa
     5761 actgttttta aaagttcgta ttttgagttt ttaaaatcaa atttaaactc gtgagcataa
     5821 agcatagaat cataagaatt atacttttta cccaagccat tatcgctaat tacccaaaaa
     5881 acatcttttt ttggaatata ttttatccca ctatgtcctt gtataggttg atttttaaaa
     5941 ggtaaataaa aatctgtttc cctgtttccc ttagatttaa aagttccaat tttttcttct
     6001 ctagtgatat ttgcaaattt cccataagtt ttaaaaaaat caggagcatc cttaggaggt
     6061 tttactgtac ttttagaatc tatgataata tgccctgcta aattggcctc atactcttga
     6121 actccaaata aaacactgca aagcatagca cttgttaaaa taaccttttt catccaatct
     6181 cctttatttc atatccacta taactttttc ttgccaaagt tgtggtaatt ctttagcgct
     6241 tttttcccaa gctttttgat ctttgattgc tcttgcattt ttgtattgct cacttggtaa
     6301 aagtttggct tttatatcat ctggcaaggt aatatgatca attcttattg gccttgcata
     6361 accttttgct agattgattt gtcctttatc agaaagtata aactcacgag ctaatttagc
     6421 cgcatttgga tgttttgcgt atttattgat aatagttgta taacccgaaa taacactacc
     6481 atcagcaggg attaaaactt cataacgatc tttgcccact ttatctctat agcctaaacc
     6541 attaaaatcc caaactaaac ccacttcaac ttcacctttt tcaagattgg ctatacttac
     6601 atcattattt acaagtcttc cttgtttagc taaagtatta aaaaaagcta aagcaggact
     6661 taaatctttt tcatccccac ctaaggcata attagctgcc aaaactgcac tcacagcttg
     6721 agctgctaca cttacatcac ccacggtaat tttataattt cccttaagca aatcttgcca
     6781 agttttaggt atatctttta ctacatcttt attgactata aaagctatgg ttcctgtata
     6841 agctaaaagc caatttccat ctttatcttt agcccaagtt ggaatttgat cccagtaact
     6901 tgtcttaaaa ggctgagcca ctccttgttt aaccgctatc tctccaaaag aagcccctat
     6961 atcccctata tcaccgcttg catttttctt ttcggcttta aatttagcaa tttcttgagc
     7021 tgaactcata tctgtatcac tatgttctat gccataaaga tttttaagat ctgcccaagt
     7081 atccttccag tttgcccaag tatcaggcat agctaaagaa tttaccctac cttctgcttg
     7141 cgcagcttta atcaaattct catcaatagc ttgtgaattt gaaaacaata aggcaacaag
     7201 acctaaactt aagaaaaatt ttttactcat ttttttcctt tcaaaaaata ttttggaaat
     7261 ttaatgagtt ttagaaacat tttagaaaca agttaatttt taagcaaaca aggttataat
     7321 tttaaagtca taaacaagga gcgatcatgc tttatattta tatcaaaact caaaatgctt
     7381 tagttcaaag aatcaatttt aatctcgata gccaagaact accgcaaaat attttatgga
     7441 ttgatttact tcatccaagt gcagcagaaa ttgcttttat atcaagtgaa tttaatcttg
     7501 agtttcctac aaaagaagaa agggaagaaa tagagcttag cgcaaaatat tgggaagata
     7561 atgcgacaat aaccatcaat gctcattttt tagtaagaga tcttaaaagt gatgaagaag
     7621 ataggaattt aatcaagctt cgcacagaaa ttgttacttt tgctaccgct aaaaatatct
     7681 tatttactat aagatataac gaatttagca cttttgaaga aattcaagca aggattttag
     7741 ctagtccgaa gaattttgaa gatggttttg atattattga taaaatgttt gaagtacgcg
     7801 ttgaaaaaga tgcggattta ctagaatgga tagataaaga agcaagacgc ttaagaacaa
     7861 gtgttttaga aaaaaaagat gaatatagtt atgatgaaat gctaaaggat atttcaagtt
     7921 tgcaagagct taatatgcgc gtaagagatt ctttatttga taagcgtcgt gctatgactt
     7981 ctttgctaaa aagcgataaa atcgataaag atataaaaca aaatctcact atagttttaa
     8041 aagacttaaa ttctttggtt gaatttagtg tttcgcaact taatatctta gataatattc
     8101 aaactatttt agccagccaa atcaacatag aacaaaacaa aatcattaaa atttttaccg
     8161 ttgcaactgt tgccatgatg ccacctactt taataggaac tgtttatggt atgaatttta
     8221 aattcatgcc cgaacttgaa cttcactatg cttatcccat agtgcttggc gtaatggtaa
     8281 tttctatcat tttacctttg gttgttttta agaaaaaagg atggttataa aaatttatta
     8341 aggagaaaca atggatacaa taaacatagg aattttaacc ctaagcgata gagcaagtag
     8401 tggcatatac gaagataaag ccactgctga aattgaaaga gtgttaaatt catatataaa
     8461 aaatgatatt atttatcata aagaattaat ccctgatgat tatgatttga tcattaaaaa
     8521 attactttat ctagcagatg aaaaaaaatg tgatttgatt gttacaagcg gaggtacagg
     8581 tccagcactt cgtgatgtaa ccccagaagc cacggaagct atgtgtgata aaatgatgcc
     8641 aggttttgga gaacttatgc gcttagaaag tttaaaatat gtcccaacag ctatactttc
     8701 aagacagagt gcaggaattc gcaataaatc ttttatcatt aatttaccag gaaatcctaa
     8761 ggctataaaa gaatgcctag agcctgtttt tccggctata ccttactgta tcgatttgat
     8821 agaaggtgct tatatagaag caaatgatga agttattaag gtttttcgcc ctaagaaaaa
     8881 atgtcaaaat taaaatttat tagctctgat aagtctgctt aattgtctag caagcagact
     8941 tgccgaagct tcatctttgc ttatcttttg cactttattt ttaaacttac aaagtctgtc
     9001 atctaaaatc acatcattga ttggaatttt aggcttttct ttttgttttt gtgaaatctt
     9061 tttcttaaaa aacattcttt aatccttttt ttataaatat acaccaactt agttgaaaag
     9121 aatattattt tagattttaa actattaact ttatttcatt attttaagct agaattcgca
     9181 aaaaaccaat caaggaaaaa taatgacttt aattgcaatt ttatgtcttt acacagcact
     9241 tttatcttgg atttcctatg ctcaaattcg tttcttagaa agagaaaaag acaaacaagc
     9301 tcaaatttta agcgaaaaag actatcaaaa tgcagcagat attgccatcg aaaatgaaaa
     9361 atttaaacta ttttccaatt tttataattt aatcatcaat attgcatgga taggttttgg
     9421 atttttatat cttaaagaat tgcttatctt aaacaacact cgttttgaaa atactttatt
     9481 tttattatct tttttaataa tcacaagtat tttaaatcta cctttaagta tttatgaaag
     9541 ttttatcaaa gataaagccc atggtttttc aaatatgact gtaaaacttt ttatcaaaga
     9601 cactatgaaa agtcttattt taactttaat atttggattt ttaatccttt atgctttgct
     9661 tttttgctat gatttttttg gaactttttg gtggattgcg gcctttattt ttgccttttg
     9721 tattatagtg attataaatc tcatctaccc taccttaata gcacctattt ttaataaaat
     9781 gaaaaaacta gacgatgaaa atttgctgaa aaaaatcagc tctttgatga aacaatgtgg
     9841 gtttagtgca aatggggttt atgttattga tgcaagcaaa agagataagc gtttaaatgc
     9901 ttattttggt ggacttttta aaagcaaaag agtggtgctt tttgatacat tattaaaagc
     9961 cttaaatgaa agagaacttt tagctgtttt aggacatgag cttggacatt ttgttcataa
    10021 ggatattatc aaagctttat ttaacggcgt tataattatg tttttacttt tttttgtttt
    10081 tgcaaattta cctgaatttg tttacttaga aagtcatcta gaaggagtaa atggtggcgt
    10141 gtttgctctt ttatttatct tggcaaatat ttttagcttt ttaatctctc ctatacttaa
    10201 cgccttaagt agaaaaaatg aatttgcagc tgatcaacac ggagctaaag ttacaagcaa
    10261 agaagatatg aaaaatgcgt tgatagctct agcaagagaa aataaagctt ttatcaaaac
    10321 aagtaaaata tatgcatttt tttatctcag tcatccaagt attagtgata gaatcaaggc
    10381 tctttcttga ctataaaaaa tgctcttatg gaagctaaat ctagcttaaa aggttatgaa
    10441 aatgaagcag tatttatact ctgtgaatat ctaaaaaaag ataaagcttg gttattttta
    10501 aaccaagata taaaaataga tcatgaacct tattttgagc ttataaagcg ttttaaatct
    10561 ggagaacctt ttgaatatat atttgaaaaa gtggattttt ggggcttaga atttaatata
    10621 aaaaaaggcg ttctaatccc tcgctatgat agtgaaattt tactttttca aattttaaat
    10681 ttatgcaaaa aaaatacttt taatgggatt ttagaaatag gatttggaag cggaatttta
    10741 agcattgttt tagccaaaga acttgaatta aaaatcacag cctgtgatat caatcccaaa
    10801 gccttagaat tagctttaga gaatgccaaa ttacacaaag tcgatcactt gattgacttt
    10861 aaactttgtc attttaagca aattaaagaa aattatgatt ttattttttc aaatccacct
    10921 tatattaaaa attcatatcc tatagatatt tgggtgcaaa aagaaccgaa agaggcttta
    10981 tttggcggag aaaaaggata tgaaattcta gaagaaatca tacatttttc ccttgataaa
    11041 aaagttaaat ttttagcttg cgaatttggc tatgatcaaa aagaaatttt ggaaaaaatt
    11101 ttatatcaaa ataatttcat tgttgatttt ttcaaagatg aacaaggtta taatcgtgct
    11161 tttatagcta aatttacaaa tatgcgttat gataaaaaat aaaaggagaa actcttgaaa
    11221 gctgttaatt tatttttact tgcctctatc ataggggttg aactcatact aggaatagtt
    11281 gttgcaccaa caattttttt tcctcaaaat cttataggag aaggagtgtt gagccatttt
    11341 caaagtggct taatgatgac gcaaattttt attaagatgg gatatttgct gatttttgtt
    11401 tcagtggtta attttttata tgaaatttat tctcttataa aagatgaaat gaaatttaaa
    11461 ataaaatttt caaaatttat gctgagtttg cttattttga ttttaagctt aatatttgtt
    11521 ttttatttta ctaataccat aattgaactc caaaacttag gcgaaaacac tacaaaaact
    11581 caagaattta tcagcatcca taatgcaagt gaagtggtga ttaaaatcat cttgataatg
    11641 caagtttttt tatatttctt aagctttaaa atagcaaaaa aatgataaaa tattaaataa
    11701 atccaaaaga gaaggagtag gccatgatga tctctgatgc aactataatg caacaaaatt
    11761 attatttaaa taatgcacaa aaagctagcg ataaagcttt agaaaatatt gcagctgttc
    11821 gcgcaataag tggagttgat agtgctaatt tagctattgc tgattcttta agatctcaat
    11881 caagcactat agatcaaggt gtcgcaaatg cttatgatgc tataggggtt ttacaaattg
    11941 cagatgctag ccttaccaat atctctcaaa gcgcagatag acttaatgaa ctttcagtaa
    12001 aaatgaacaa tgctgcactt aatgattctc aaaaaggaat gctaagaaca gaagcaacac
    12061 gcatacaaga atccatcaat gattctttta ataatgcaac ttataatgga aaaaatgtct
    12121 ttcaaactat gaattttgta gtaggtagcg gaactgaaac tacaaattta aatccattag
    12181 caacagatgg attaagcata gataatcaag atagtattac aaattttatg gatcaacttg
    12241 gaagtttaag aagtgaaata ggctcaggta tcaatgccat cacatcaaat attaatgcaa
    12301 gtgttcaaaa tagcatcaac tcaaaagcag ctgaaaataa tttactaaat aatgacatgg
    12361 caaaaaatgt taatgatttt aatgccaatt atctaaaaga aaatgctgct gcttttgttg
    12421 ctgcgcaatc caacatgcag cttcaaagca aaattgctaa tttattacaa taaaataagc
    12481 cctaaatagg gcttattttt tatcaaaatg actttagagc aaattttaga aaaaaccaaa
    12541 aacgttcgtc ttgtagccgc aagcaagtat gtcgatgcaa gtataattga aaagcttttt
    12601 gatcaaggta tagtagaatt tggagaaaat caagtccaag ctctagcaca aaaaaaagaa
    12661 aatcttgatg aaaaaaaact agacataaaa tggcatttta taggaacgct acaaagcaac
    12721 aaaatcaatc tcttaatcaa acaaaaacct atattatggc actcttgtaa tggtattaaa
    12781 atagctaaag ctatggacaa aagacttgat tataaattaa atactttatt agaaatcaat
    12841 agtgcaaatg aaaatagcaa aagcggtcta gatccaaatc aagccgtaga agaatattta
    12901 caaatacaag aagaatgctc taatttaaat ctttgtggcg taatgagcat aggatcacac
    12961 agccaagata aagaaaatat tataaaaagc tttgaaacta catttaaaat ttatgaaatt
    13021 cttcaaaaac atggggctaa gatttgctct atggggatga gtaatgattt tgaaattgct
    13081 ataaaatgcg gatccaactt ggtaagactc ggaagcattt tatttaaaaa tcttaagtaa
    13141 aacaatctta cttaagcata tttattagaa atttcctcta ctatactatc agagataata
    13201 aaatctgtat gataaagcag gcaagatccc gcgctaataa cttttaaaac aagtttttta
    13261 ttattttttt cattaggatt atgtgcattt ctagcaattt catgaatttc atagattaat
    13321 tctctattta accttgtcaa atctagctct atgatatttt tttcaaattc cttaggttct
    13381 gcggtaaaat gattttcttc tttattttta aaatcttttt ttgtgccaaa tttttttata
    13441 gctttaatct caccatcttc aagactttgc aagtctttaa ttgcttttaa aaaaaagctg
    13501 ggcttttccc ctccttcagc tttaaatccc aatacaaaac cataagcatt atttttcaaa
    13561 ttttcatctt taatgatatt ttctatttct tctacattac tttcaaatac agtagcatca
    13621 aacgaagaat aataatccaa aatttcaatt ctaccataac gcttattatt tttactcatc
    13681 atagatttaa aatcttcaat tttacctata cttaaaattt ctccattgtt ttttaaacct
    13741 tcaaactcta aacttttaac ataatctatg gcattaattt gttcataaaa tcgatctaaa
    13801 ggatggcctg aaacataaat tcctaaaatt tctttttcat atcccaattt ttccatcact
    13861 tcaaattctt catttttggg agtaaaattt acttgaacac ctgaagttaa ctcctcttca
    13921 ccaaaaagag aacttgcagc attttttctt acttcagcca ttttacgcga tgcttcgcta
    13981 agattttcca tattatcaaa caaagctttt ctagtaaaac caaactcatc aaaagcccct
    14041 gccttaataa gactttctaa tgttctacgg tttatcttag taggatctat cttacctaag
    14101 aaatcattaa tatccttaaa ttctccatct tgccttgctt caagtaaatt ttcaactgca
    14161 ggaataccca cactttttat agccccaagt ccgtatataa tagcatcctt gccatcttgc
    14221 tctaaagcac taaattcacg gatcgctttg ttaatcgatg gaggtaaaag tttaatattc
    14281 atttttttca tctcatcaat ataaacagca attttatcca cattgttttc ttcgcttgtt
    14341 aaaagcgctg ccataaattc actaggataa taagttttta aataagctgt ttgaaaagta
    14401 atcaacgcat aagccgcaga gtgagattta ttaaaaccat atcctgcaaa ttttacgata
    14461 agctcccata aatcctcagc ttttgctcta tcatatcctt gtttttctgc tccatctgca
    14521 aaatcagttt taagcttttt catcttctca ggatcttttt tacccatagc acgacgcact
    14581 acatcagcac ctcctaaaga aaagccacct ataatttgaa caatttgcat aacctgttct
    14641 tgataaacaa taatcccata agtaggctct aaaacctttt ctaaactgtc aaaaggatat
    14701 tctatacttt ttaaaccatg ctttctgtcg ataaaatcat caagcattcc tgattccata
    14761 gggcctggac gataaagcgc aagaaccgca atgatatctt caaaacgctc tggttttaag
    14821 cgtgcattta agctttgcat accgcctgat tcgatttgaa aaattcccaa agtatttcca
    14881 ctttgtatgg ttttataaac tttgctatca tttacatcta tagtttccca aataatgtct
    14941 ttattgtaac gctttttaat aagcttgatc gcattattga ttactgttaa ggttttaaga
    15001 cctaaaaagt caaattttat caaatctaca tcttctaaat gatctttaga atactgcgtt
    15061 accaaatgtc tttcatcatt tttactttgt ctaaaaagcg gagttttctt ccataaactt
    15121 tcattagaaa ttacaacacc tgctgcgtgc atacccgcat tgcgatttaa tccttctaaa
    15181 gctcttgcat actcccaaac ttcaggacct ttaggatgac gatcaataaa ttctttgatt
    15241 ttaggttctt tttcataagc agcatcaaga gtgattttaa gctcttcagg cacaagttta
    15301 gcaagctcat cagcatcttg aatactcata tcacaaactc tagccacatc acgaatcacc
    15361 cctttagcca aaagtttacc aaaggtaatc acctgtgcaa ccttatccgc tccatattta
    15421 tcaatcacat agtcaatcac ttcagcacgt ctgtcttgac aaaaatccac atcaatatca
    15481 ggcatgctca cacgctcagg atttaaaaaa cgctcaaaaa gtagactata aggaatagga
    15541 tctaaatccg taatccttaa acaataagaa accaaacttc ctgcagctga tcctcttcca
    15601 gggcctactg gaataccttt atctttagcc actttaataa aatcatgaac aataagcata
    15661 taacctgaaa atttcatatt tttaatgatg ttaatttcta cttcaagtct ttgtttgtat
    15721 tcttcatgct tgctttcatc gataaatttt aatctctctt caagtccctt tttacaaagt
    15781 tcttcaaaaa ctatgtcatc attatcaaag ctaaattctt ttgtttcttc aggtaagata
    15841 atattatgat ctttagcata ttctcttgta aatttaaaat tcggtggagt gggattgcca
    15901 agattaagct ctaaattaca tttttgcgcg atttcttgtg tattttctat agcttctgga
    15961 atatctgcaa aaagctcact catttgctca gggcttttaa cataaaattc atgcacacta
    16021 tgacgcattc tatcagggtc attaagtttt tttcccatag ctatacacat aaaaacctca
    16081 tgggcagccg ctctttcttt aaaagtataa tgcgtatcat ttgtagcaat aatttttata
    16141 tttaattctt tagaaagtct gataatatca tcatctatca ttctttgatc acctatacca
    16201 tgacgcatga tttcaaaata aaaatcatct ttaaaaactt ttttatacca taatgctgct
    16261 tcttttgctg cttcatagcc ttttgcacca aaacgcacat ttctttcact ataagtattt
    16321 aagtgccaat ttacttcacc ttgcaagcaa gcagaagaac aaataagacc ttcgctataa
    16381 tcttccaaaa gctttttatt gatacgcgga taataataca aacctttaat ataactttga
    16441 gaacttaaat acattaaatt ttgatatccg atctcatttt ttgcatacaa acaaaggtga
    16501 aaacgctgac gagaactttt atcatctaat tcatcatgat tatgtaaata cgcttccata
    16561 ccaatgatag gttttaaacc ttgtgctttc attgtttgat aaaaatcaat tgccccaaac
    16621 atatttccat gatctgtcat agcaacactt gtagcaccct gctcttttaa agtcaaagct
    16681 aattctttaa gtttattggc tccatcaagc aaagaatatt ctgtatgtaa atgcaagtgt
    16741 gtaaattgac tcattttctt cctttaattt tttaaggctt attttaattt tgataaaaat
    16801 tataaatttt tctcgctgaa tttgaaagaa attagcccta aatttcaact taaatttgac
    16861 aaaaaggcaa aaattcagcc aaaataaact ataataaagt ctaagatttt aatcttaata
    16921 aaaagaactt ttcaaaggat gaaatgatga aagtaaaaat tgcttattgc aatctttgaa
    16981 attatcgccc acaagctgca aggattgcag aggaactaca aagcgatttc aaagatgttg
    17041 aagtagaatt tgaaattggc ggcagaggtg attttatcgt tgaagtagac ggaaaagtta
    17101 tcttctctaa aacacaactt attaattgcg aaagtgaaag atttccatat caaaatgaaa
    17161 ttaatcaatt aataaaaaat agagtgtaat caaacactct atcataacat tttctcatat
    17221 tccttaccaa tatatatgtt ttgctcatac tcgataatag gacgcttaat acaacttgga
    17281 ttttctaata caattttttc aagttctttt tcatttaaat ttttaacttt ttctttgttt
    17341 aagccaagtt ttttagaagt taatccagca gtattgataa gttcttcaaa agatttttgt
    17401 tttaaccatg tgtataaaat atcttgatta atctttttaa tatccataaa atcaaacaca
    17461 ataccttttt gtgttaaagc atctatagct ttctttacag aattgcaatt tttaatacca
    17521 taaaatttca ttttctagcc ttttttacca aatctgcgat taaaaaagca agttctaatg
    17581 cttgatccgc attaagtctt ggatcgcatt gagtctcata acgatcttcc aagctttgag
    17641 cagtaacatt gcttgcacca cctgtgcatt ctgttacatc tttcccagtc atttcaagat
    17701 gcactccacc tggataaacc ccttcgctta ttgcaatctc aaaaaaagat ctcacttctt
    17761 gcataatttt atcaaactca cgtgttttaa aattgcctgc ttttaccgta tttccatgca
    17821 taggatctat gctatatact aaatttaaac cttcactttt aagtttagag aaaatttttg
    17881 gcaaattatt gataatttta tctgcaccca tgcggataat aatatttaat cttccttctt
    17941 cattatttgg atttaaaaca tttgctaaag ctatgatatc atcagcactt gcactaggtc
    18001 ctattttaac ccctaaagga ttttttactc cacttaaaaa atgcacatga gcttcatcaa
    18061 gcgcccttgt tctttcacct atccaaagca tgtgagctga acaatcgtaa atttctccac
    18121 ttaaactatc cactctagtt aaagcttctt cataaggcaa aagtaaagct tcatgtgaag
    18181 tataaacact aacttctctt agacttggag tattacttgt attaattcca caagcttcca
    18241 taaaagctaa agcttgtgaa attttttcac tgatatcagt atattgctta tggagttcac
    18301 tcttttttaa aaagcccaaa ttccaacgat gtacttcatg taaatctgct aaaccaccct
    18361 tagcaaatcc acgcaacaaa tttagcgttg ttgcgctttg ataataagct tcaagcattc
    18421 tatgtggatc aggaatgcgt gcttgttcac taaattcaaa accattaata atatcaccac
    18481 gataactagg aagacttata ccatctaact cttcaaaatc actacttctt ggcttggcaa
    18541 actgccctgc aatacgacca atttttataa caggacatcc accagcaaat gtaagtacta
    18601 tagccatttg aagtaaaatt ttaaacatat cacggatatt tacagcgcca aaattttcaa
    18661 aactttcagc gcaatctcca ccttgaagta aaaaagcttc ttttttacaa actcttgcta
    18721 aagacttttg aagatttctc acttctccag caaaaaccaa aggaggaagt ttctcaagtc
    18781 ttgctaaaac tctattcatt tcctcttgat ctggatagat aggttgctgt tttataggat
    18841 agtttttcca agaattctta gcccacatgg ttttttcttt cgttttattt atcagcttcc
    18901 tctataagtt gaataaccaa aaggagaaag ggttattgga acatgataat gtttctgatc
    18961 tttagaaagc tcaaaactta cctctacaaa aggataaaaa gtatttattt tgtgtgatgt
    19021 gtaatagtct tttgtaaaaa atttaagctt ataaattcca aaagccctat tttcagcttt
    19081 ttcatatggt aataaatctc ctattctacc attttcttcg gtaaattctt cacttacttt
    19141 tttccactgt tgatttgctt ccaacttata aagctcaact tttactttag gagcaggttg
    19201 tccagaagta atatccaaga catgagtact taattgatat tcagtagcac tcaaaaacat
    19261 tggcacgctt gctagtatta ataaagtttt tttaatagaa aacattttct ctccttgtat
    19321 aatattta
//
LOCUS       DAPIWV010000019        19194 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.020, whole genome shotgun sequence.
ACCESSION   DAPIWV010000019 DAPIWV010000000
VERSION     DAPIWV010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19194
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.020"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            76..591
                     /gene="nrfH"
                     /locus_tag="RJ272_000471"
     CDS             76..591
                     /gene="nrfH"
                     /locus_tag="RJ272_000471"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HDV7381592.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            606..2438
                     /locus_tag="RJ272_000472"
     CDS             606..2438
                     /locus_tag="RJ272_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HDV7381593.1"
                     /translation="MKKNILRLGIVVLVLLIVGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2574..3128
                     /locus_tag="RJ272_000473"
     CDS             2574..3128
                     /locus_tag="RJ272_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381594.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQK
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3192..3281
                     /locus_tag="RJ272_000474"
     tRNA            3192..3281
                     /locus_tag="RJ272_000474"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3226..3228,aa:Ser,seq:gct)
     gene            complement(3354..4346)
                     /gene="ceuB"
                     /locus_tag="RJ272_000475"
     CDS             complement(3354..4346)
                     /gene="ceuB"
                     /locus_tag="RJ272_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HDV7381595.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(4359..5114)
                     /locus_tag="RJ272_000476"
     CDS             complement(4359..5114)
                     /locus_tag="RJ272_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381596.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(5111..6049)
                     /locus_tag="RJ272_000477"
     CDS             complement(5111..6049)
                     /locus_tag="RJ272_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDV7381597.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISMVINFLGGIYFIYLVLKGNKL"
     gene            complement(6042..7010)
                     /locus_tag="RJ272_000478"
     CDS             complement(6042..7010)
                     /locus_tag="RJ272_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7381598.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVGIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKAYA"
     gene            complement(7096..8085)
                     /locus_tag="RJ272_000479"
     CDS             complement(7096..8085)
                     /locus_tag="RJ272_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HDV7381599.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALKYEKQGDYKKAMEIYKKLALK
                     NSSVLISREQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(8082..8657)
                     /locus_tag="RJ272_000480"
     CDS             complement(8082..8657)
                     /locus_tag="RJ272_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDV7381600.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVNKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     KNELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELR"
     gene            8720..10027
                     /locus_tag="RJ272_000481"
     CDS             8720..10027
                     /locus_tag="RJ272_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HDV7381601.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            10029..10367
                     /locus_tag="RJ272_000482"
     CDS             10029..10367
                     /locus_tag="RJ272_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381602.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            10376..11101
                     /locus_tag="RJ272_000483"
     CDS             10376..11101
                     /locus_tag="RJ272_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDV7381603.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVAFL"
     gene            11098..12168
                     /locus_tag="RJ272_000484"
     CDS             11098..12168
                     /locus_tag="RJ272_000484"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDV7381604.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAIDFSKIPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            12170..13564
                     /locus_tag="RJ272_000485"
     CDS             12170..13564
                     /locus_tag="RJ272_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HDV7381605.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINRELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            13561..14568
                     /gene="tsaD"
                     /locus_tag="RJ272_000486"
     CDS             13561..14568
                     /gene="tsaD"
                     /locus_tag="RJ272_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDV7381606.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNTNLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            14569..15084
                     /locus_tag="RJ272_000487"
     CDS             14569..15084
                     /locus_tag="RJ272_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDV7381607.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGNFNGTKEVNFRVGDDKECLKLLF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            15084..16335
                     /locus_tag="RJ272_000488"
                     /pseudo
     CDS             15084..16335
                     /locus_tag="RJ272_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            16345..18195
                     /locus_tag="RJ272_000489"
     CDS             16345..18195
                     /locus_tag="RJ272_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7381608.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLKFIQNKTCFRFSIDENLNIY
                     DKTHNVFMYENLEEELNFFYQGILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDVCEPKMELQLSILFDQKDMFEWLNLYEMFI
                     SCNFYKMYYQDVILKTDQTCMDNIFVVIRNFDPNDQLTTICYKQFLQNIPHLLQNIPF
                     QRLLSERKAKFDTAVVVSAGPSLHKQLALLRQYQENVVIFCADGALNMLENEGIVADY
                     VLNLDIEDLAVKFFNCSKSLDYSKTIAVLAVNTHPNVIDCLINKFLYCIALRDEYLYK
                     QFHLDDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDKDGNSHSKGFAFGENS
                     NAEKNFQLLQVPSYYKDGNKVTTHVSWNDYRIKLEYLIARNSEINFYNATEGGAYINF
                     AKNTSFKECCEKFFTQKKPCFDIPKTFTYNRSLKFLSKVFLHLKNDLQNAQDILRDAH
                     LLNNVLIGVVNIKNPLPLDFLQNIYKSIGDFNSVLDDDKFIQDGILKGVLYYRGSFLS
                     EAIKKDLKDEAYYLLNFISAYQKWLEKFIERLEIKNAIIKDTVLKYGNLI"
     gene            18290..>19194
                     /locus_tag="RJ272_000490"
     CDS             18290..>19194
                     /locus_tag="RJ272_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7381609.1"
                     /translation="MGFRINTNVAALNAKANSDLNSRALDQSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGGFTNQEFQIGSSSNQTIKAS
                     IGATQSSKIGVTRFETGSQSFSSGTVGLAIKNYNGIEDFKFQNVVISTSVGTGLGALA
                     EEINRNADKTGIRATFDVKSVGAYAIKAGNTSQDFAINGVVIGKVDYSDGDENGSLIS
                     AINAVKDTTGVQASKDENGKLVLTSA"
BASE COUNT         6869 a         2630 c         3231 g         6464 t
ORIGIN      
        1 tcatctatgt taaaattaaa aaatttattt ctgggaaatt ctgtgacatt gttgtttcat
       61 tgaagatttt aagaaatgat aattttaagg aggaaaattt tgaagaaaac ttcgaatctt
      121 tttactattt ttcttgtttt gctttttgtt ttctttgcgg ttgggtttta tactttttat
      181 aacgctaagg gcacatctta tttaagcaat gcaagtgaat cttgtaataa ctgccatatt
      241 atgaatgaag tttataacga atacatggca ggaccacact ctcaaaaagt caaaggcgaa
      301 ccaagagcaa cttgtgtgga ttgtcatttg ccacataatt ttgtagctaa gtggatagct
      361 aaagcgcaaa gtggtttagg acatgcttat gcttttactt ttaaacttga tgagttgcct
      421 acaaatttga gtgcgactga aaaaagcaga aaaatggtgc aagaaaactg catacgctgt
      481 catgcagatt ttgctcaaac agctatcaat gctacaacaa atccacatgc agacaagtca
      541 ttaaattgtg cttcttgtca taaagatgtt ggacataaac acggaattta ataaggagaa
      601 gatgaatgaa aaaaaatatt ttacgcttgg gtattgttgt tttggtttta cttatagtgg
      661 gagttttatg gctaaataat gatatcaatc aaaaaaaaga agatgaagca aataaaaatg
      721 ccattgcagc aaatgctgat ttttctttgc ttagtgatga tgatccaaat tttgaaaaat
      781 ggggtaaggt ttttccagag cagctaaaaa tgtatttaac agttgaaaaa gaagagccta
      841 aagctactga atttggtggt aatttagctt attcaaaatt aattcgcttt cctcaattaa
      901 ccatactttg ggcaggatat ccttttagtc ttgatttcaa tgaagaaaga gggcattttt
      961 gggttcaagt agatcaaatg aaaacagcaa gaaacaacaa agattttctt aatgctcacg
     1021 gccttgctgc ttttaaaggc cagcccgcag cttgtatgaa ttgtcatagt ggatggactc
     1081 catggcttat aaaaaatgtt gctaaaggag attttactgc ttttaactct acaaattatt
     1141 ggactatgat taaaaatatc ccagccgttg atggtatagt ggaaaattca cctgaacatg
     1201 caggtccaca tggtggtaaa agaatgggtg taacttgtgc agattgtcac aatccaaatg
     1261 atatgagttt aagacttact cgtccagcag ctattaatgc tttagtttct agaggatatg
     1321 aaaaagatcc agtgcaaggc gtaaaagcta caagagaaga aatgagaact ttagtttgct
     1381 ctcaatgcca tgttgaatac tattttaaac caacagggga aaaagtaaaa gtaatgggtg
     1441 aaactattgt agatgatagt tctaaaaaat ggtggaatgg aactcagaaa aattatgatg
     1501 agtatgaatt ttggagagat ggtaataaag ctaaagagat tgaaaccgat ggtatagttt
     1561 taacttttcc ttggagtgag tggaaaaaag gacagccatt tagaattgaa atgctagatg
     1621 attattatga taaagttcgt ggagtatttg gagctgattt tactcataaa ttaacagggg
     1681 cacaaattat taaaattcaa catccagaaa gcgaacttta tagtggcggt gtgcatgctg
     1741 caaatggggt aagttgcgtg gattgtcata tgccttatgt tagagaagga gctaaaaagg
     1801 ttactcaaca caatatcact tctcctttaa gagatattaa ctctgcttgt aagtcttgtc
     1861 ataaacaaag cgaagattat ttaaaagctc aagtgcttga catacaaaac agcgttgcgc
     1921 atgatcaaag aactgcagag tatgcaattg ttagtttgat tatggatact aaaaaactac
     1981 gcgatgaact aggtaatatg gaaaaattcc aaagcgatgg aaaagctgat gcgaaaaaaa
     2041 ttagcgaaga actaaaagaa gttttagaac ttcatcgtaa agctcaaatg agagcggatt
     2101 ttgttaatgc tgaaaactca actggtttcc ataatcctcg cgaagcttca agaatgttat
     2161 tgcaagctgt tgatatggca agaatgggac aaactaaact tgtagaaatt gcagcggcaa
     2221 atggaattaa agattttaaa acttcaaatt taggttttga agatattcaa aaatttaatc
     2281 caggagagct ttattataaa gtagatgtta ataatcataa agctggagag cgttactatg
     2341 cagatgaaaa agatgttaat ggcaatcctc caaaagaact tttagagcat gataaagagc
     2401 ttgctcctta taattatcaa gtgattgata aaaaataatt cttaagccct ataatcatag
     2461 ggctttttct tttctttgtt ttaaaaaata taaacttttt atttaaaatt cacttttgct
     2521 tcactttgtt ttgtcaaaat atcacaaatt ttgataatca aaaaggagtt aaaatgatca
     2581 ataaaaataa attgtttaga caggttcata tctatcttag tttgttcttt ttgccttgtg
     2641 ctttgctttt tgctttaacg ggtatagcgt atatttttgg tattaatcaa gatgtgggct
     2701 taaaagttga gcagtatcaa ttgtcaaaag ttatagaaag tggtaaagaa agagaagctt
     2761 taatagagta tttaaaaaca aatggtttaa aagtaccatc taatacaaat ataattaaaa
     2821 gtaaagataa aggtataaca ataggtggaa ctcattatag tgctaatata actcaaaaat
     2881 ctactaatga atacaatatt accttaaaaa caagatcttt acttggcgat atgattatgc
     2941 ttcataaaga taagggtgct tggtattttt ctgtgcttag tgtaggcttt ggtattactt
     3001 tatttatgct ttatatttca gggcttatga ttactttgtt tgcaaataaa aaagatagaa
     3061 gtaagcaatt tgcagttctt ggagtagggg ttgttgtaac tttgcttttg gcttatctta
     3121 gcctttgatt tttcctagct ttttaagcta ggtattattt atttttttgt ataatcatac
     3181 tttactttat tggacagatg ggtgagtggc tgaaaccaca cccctgctaa gggtgcagat
     3241 cttaacgggt ctcgagggtt caaatccctc tctgtccgcc actaaaactt tcttgaaaat
     3301 cccaagtatt ttattaggta tcgaagcaag agactagccc ttgcgaagtt atattatttt
     3361 acagcgtttt tgatttctaa aatcatagtt tttaaagact ctagtccatt tccacttgct
     3421 aaataccagt attctggatc aagatagatg atttttttat tttgcgctgc tttggtttta
     3481 gcgacaagtg cattatcgag tatgccttga gcacgttctt tgttgcctaa gatgacattt
     3541 ctatcaacaa caaaaatata atcaggattt ttttctaata taaattcaga attgatactt
     3601 tttccgtgtg tgcctacttt tatattctca tctaccgcgt taatccctaa aacatcgtga
     3661 ataatcccaa agcgagattg aggaccaaag gctgaaattt tgttagaatt tgtaagaatg
     3721 ataagagctt ttttatcttc atcaactata cttttggctt tttcaatttc atttttaata
     3781 tctgaaattt tttctaaagc ttctttttct aaaccataaa gttttgcaac gcttaagaca
     3841 ttgttttcaa aagagcttaa aaaatttgca ttatcaagac ctacaaataa agttggagct
     3901 atttctttta atttgtcata aaatttactt tggcgtccag aaatgatgat aagatcaggt
     3961 tttaaagcat taatggcttc aaaatcaact tgttgtactc cacctacact aggtttgttt
     4021 ttaaattgtt gtaggtattt tggtaaattt ttagcaggaa cgccaacgac tttatcattt
     4081 aattttaaag catcaaaagt atctaaaatt ccaagatcta agatcactac cttagaagga
     4141 tttttaggga ttttattttc tcctagacta tccttcacta aaaaactatc accctcatcg
     4201 ctcatactaa taggcaaaac tttcaccgta gcagtgttgg tttttgttgt agaacttgcg
     4261 ttgttttcat ttgagtttga attacaagct gttaagatta gacttaaaaa aaatgcaaaa
     4321 aatgcaaaaa ctaaagattt tttcatattt tctccttttt aaaaataaat acaaattttc
     4381 ttaccattaa tttgacttac gggtatatcc atatcataaa tttgttttaa attttcttga
     4441 ttgatgattt catcttttga gccttgtttt aaaagctttc catcttttaa ggctatgatt
     4501 tcatcagaat aaatcgaagc aaaattaata tcatgtaata caacagctat acttttgtta
     4561 aagtctttga ctaaattttt cattagttgc atgatttgta cgctatgctt catatcaaga
     4621 ttgttcaaag gttcatcaaa cattataaat tcagtatcct gagcgatgat catggctata
     4681 aaagctcttt gcttttgtcc cccgcttaat gtatctaaaa attcatttct taagttgcta
     4741 agttccatgt attctaaagc ttcattgatt ttgattttat cgtttgtatt aagtcttcct
     4801 tgagaatgcg gaaaacgccc aaaagcgact aattcttcaa cttttaatct taaattgata
     4861 ttgttttgtt gtttgagaat ggaaattttt tgtgctaaga tttgctcttt ataatttttt
     4921 aaattcattc catcgatata aatttctcca ctactaggtt ttatcaaacg acttgctaga
     4981 gctaaaagag tggattttcc agcgccattg gctcctatta tagaagtgat tttgccttta
     5041 tgaaaatcaa ggctaagatc tgaaataatg actttattat cataaaattt ggtgatattt
     5101 tttagtttaa tcataattta ttacccttta atacaagata gataaaatat atcccaccta
     5161 agaaattaat aaccatgctt atagtggcat tataatcaaa aactctagag acaaaaaaca
     5221 cccctccaag caaagccaaa atactaataa gtatacaagc gcttagcaaa atactatgct
     5281 ttgcagtttt aaatagttca taagtgatat ttaccaccaa aagccctaaa aaggttatag
     5341 gacctacaag tgcggtgcta atagaagtta aaatagctat gataatcatc aattgttttg
     5401 aaattttttg ataatttatc cctaaattta tcgctaaatc tttgcctaaa tttaaaggat
     5461 ctaaaaattt catatagcga aaaatccata taaaacttaa aaagctaatg atataagcaa
     5521 gaattaaaac atcaaaagca atattatcga aactagcaaa cattcttcct tgtattacca
     5581 tgaattcatc agggtcgatt aatacttcaa aaaaagagct taaagtgcta aaaagtgttc
     5641 caaaaactaa gcctaaaagc atgataagat aaatacttct atcgctacta aataaaattt
     5701 tataaagtcc tagtgaaaaa accaccatac aaactagagt gattaaaaaa ttgatatcgt
     5761 ttttataaac acttaaatta gctgcaccaa aagaaaagat aagagcactt tgaagtaaca
     5821 tatataaaga atctaatcct atgatggcag gggttagaat tttgttattg cataaagttt
     5881 gaaagattac tgttgaaaca gcgatacaaa tagctactat gataatagct gcaatttgta
     5941 aaaaacgact ttttaaggca tactcatcaa agccatttaa acccacaagt ataaaaatcc
     6001 ctatcatacc aagtgttaaa aagcttaaaa tcagcatttt tttacgcata agctttcctt
     6061 tttagcaaaa gaaagataaa gattaaagat cctaaaacac ctgtagtgat acttaaaggc
     6121 atttcaaaag gaaagatgac aagtcttgaa atgatatcgc aaacaagtaa aaacaaagct
     6181 ccacaaagtg ctatatagat aagatttttt ctaagattat cacctagata aagagctact
     6241 aaatttggga taattagccc taaaaaaggg ataattccaa cgcttacaat cactaagcta
     6301 gtgataatgc ctacaatcat caagcctaaa aataatatcc cattataaga aattccaaga
     6361 tttaaagcta tatcttcgcc catgccaact atggtgattt tatgagctaa aaaataagca
     6421 agtataaaaa gtggtaaaga aatgtagagc aattcataat ttccctgcat aacatttgcc
     6481 atactgcctt gtaaccagcc ttggatattt tgtatataat ttaaagcata ggcaaaaaaa
     6541 gtagttatag cactaataat gcctccaaac atcaagccta tcaaaggtac aaaaatcaca
     6601 tctttgagtt tgatttttct taaaatttga ataaatataa aagaacccaa aagtgcaaat
     6661 acagaagcaa tgatagcttg agtgaaaaaa gacgctccag taaaaaatat taaagaaata
     6721 agtatgccaa atttagcaca atccatagtc cctgctgtag ttggagaaac gaatttattt
     6781 tgcgtgagtt gttgcatgat aagcccacat atactaagac tcattcctgt gagtaaaatc
     6841 gctataagtc taggaattct tgtgagggtt atgatttcta gttgagtgga gttaagatta
     6901 agaatatctt ttacattgat actgataact cctataaata aacttatcat tccaaagaat
     6961 aaaagtaaag ctataagcac ttttaaactc aatatatgct taaaaaacaa atctttcctt
     7021 atagtaataa taattatcaa aaatgaaatt gtaatgaaat ttgttttaag aaatgataaa
     7081 actacaaagg atattttagt aagaaatcaa aaatccagtg gaaagtcttt gcaagtgttt
     7141 gttatagtct ataaggcttt ctccatagcc attaaagtat tgtaaatacc aataaattcc
     7201 gttattaaaa atatcatatc ctagatcaac ttgtatagca cctttgttat tgtggaattt
     7261 aagattgttt cttagcataa gattgataaa ataatcatcg cccaaatacg ctaaattcac
     7321 atcaaaattt cccatataat gcaagatagc aggattatca tcatcttttt tgttttcagg
     7381 aattctatac caaaggcgtg gaacaaataa aaatttatta tataaaatag cagtagatac
     7441 ataaattcta ttccatgagc gagattgtaa attctcatct cccttgccat tgctttcatg
     7501 caatatacct acgcgtagat tgttaaaaaa ttcataatct ttaagataca aaggaaaatc
     7561 tataaaaaat tctggttgat agttggtttc tctaaaagga gaagaatgct cataaatttg
     7621 ccaccaagaa gtttgagtat aggctatata atatttttca tctagtccta gtaaattttc
     7681 aaaaagtctt tttttaacac taagttggaa tttcgcctca ctcttattat tatttactcc
     7741 taaagaatta aaactataag caaaaggtaa aaaataattc atcttataag agctaatgcc
     7801 aaggggatta aagctttcat tttcaccaag ataattagcc aaagctaagc gagaaaagtc
     7861 ttgtttttct tcttttttta tagtgataga attttgcatt tgtgttgctt cgcttgagtt
     7921 attttgttct cgagaaatca aaacagatga attttttaaa gcgagttttt tgtaaatttc
     7981 catagctttt ttataatcgc cttgtttttc atactttaaa gcttgttgta aatcactagc
     8041 ccatataaaa acgcataagc ttaaaaataa agcaattttt ctcatcttaa ctcgctttta
     8101 aatttttcat attcttcata aaaattaaga tttaaaaaag catcttcatc ttcaaattct
     8161 acaaatttgg ttttaatctc agaaaataaa agtcctattt tttgttcatt tttttctaag
     8221 aaatttttac aagtttgagc taaagagctg tgataaaagc cacataaggg atgtttatgt
     8281 aaaggggttt tggctatgat tattttatag ttttgctcta aaaaaggaag catttttaaa
     8341 agctcatttt tacctacttt aggactatct acacttaaaa caaaaacaaa ttcattttta
     8401 aaatttgaaa gtatagagta aagcgcaagc ataggagagt aaacttcaaa ttctaaagaa
     8461 tcttttatca agctaaaatg gttttcaaat ttgtcttctt tcgcactcac atagacattt
     8521 ttaaaaattt tagaaaattt atttacttga aattgagtta aattttgatt tttaagaatc
     8581 aatttgcttt tatcttgtcc catacgacta gatttaccac cacataaaat cacgcaattt
     8641 agctcattaa gctgcacaaa tttccttttt taatgtaatt ctaccacaaa attcgccaaa
     8701 atattttata atttctttta tgaaatacac agaactttta caattacaaa cttttttttc
     8761 tcagtttaaa aaaatcgatt ttatcaagcg tatcaatgac aatattttgg aattaagctt
     8821 tgatagagaa agatttattt ttgatcttac tcgtgcaatg agtgcgattt atacagctaa
     8881 atttaatgca aaaaattata atgcaccttt tgattttatg cttaaaaagt attttagcaa
     8941 tgcttttata aaggaagtta aagtccttga aggcaatcgt attttatgtt ttagtgtaaa
     9001 agctaataag gcttataaaa gctatgagag caaaatttat tttgaattta cgggtaaaaa
     9061 taccaatgtt attcttacag atgaaaaaga tttgatcata gaggctttaa ggcacattga
     9121 taaaagttat cgtgttgtaa aacctaatgt gattttagag tctttaaagc cttataaaat
     9181 ggatgaaaat tttgaggaaa ttaaagactt tgcagattat ttttctcgca aatttacaag
     9241 catttatgag agtaaaatca aacaaataaa aaatttaaaa cttgcacaag tggataaaaa
     9301 aatacaaaat ttacaagaac ttttttctag tttagatgaa gaaaattctt tactcttaaa
     9361 agctttagaa tacagaaaaa gggctgatgt attgtttgca aatttgagtg ttttaaaaga
     9421 ttatgaaagg gaatttaagc ttgatgattt tgaaggcaaa gagcttgaat ttaagcttga
     9481 atttaatcct aagcaaagcg ctaatttata ttataaaaat gctaaaaaat tagaacaaaa
     9541 agctaaaaat ttaaacatac aaagacaaaa tttaaaagaa aagttagatt ttaccttgag
     9601 tttgaaagaa ttattgcttc aagctaagag tgagatagag cttgaaattt tactacctaa
     9661 aaaaaatagc aaaaaaaatc aagatcataa acaagaagat cttgtggcaa atttttattt
     9721 taacgagttt aaaatttgcg tgggtaaaaa tgaaaaaggc aatgaatttt tacttaaaaa
     9781 tgctaaaaaa gatgatttgt ggcttcatgt aagggatatt cctagcgcac atactttgat
     9841 tgtatcaaac aagcaaaaaa tcagcctcga tgtgatagaa tttgctgcaa ggctttgtgt
     9901 aagcttttct aagttaaaga aaggttcgta ttgggtcgat tataccttaa aaaattttgt
     9961 taaggttcag caaaaggcgt ttgtaaatta tacaaatttt aaaagtatta atatcacaaa
    10021 ggattaaaat gccagttagc cctttaggaa atatcaatta tataaatcag aatatggctt
    10081 atccagctac acaagcaagc aatgagcttg caaaagaagg ttttgcagct acgctaaata
    10141 tggctgaatt taatgaaaaa gaaaaaactt taaacaagct tgagaaagtc aatgagactc
    10201 atgaaatcaa agaagagatc aaagaaaaag ccgaacaaga agaaaaaaag aaaaaacaca
    10261 atcaagaagc taaaaccagc gatgatgaga aaaatgaaga agatgagtct aaagatccaa
    10321 attttaaaga cgcacaaagc attcatcgct tagatattag tatataagga aaaatatgtt
    10381 taatacaact agaattattt cagctcttgt gatgataggg gctattatta ttatcgcgtt
    10441 gattgatcaa ttttttatca attttatcgt ttttgcggtt ttattgtatt tatcttttag
    10501 tgaagcaaaa aaactttttg ctttagaaaa tatttctatt atccctttgg ctatagcttt
    10561 tattttggga agtttatcgc ataaagcttt gctttttggg attttagctt tgttattagt
    10621 cgttggatat ttggtttata aaaaggcttc cttaaaacca gctcttattt atatttatcc
    10681 tagtttgcct attttagcac tttggcaagt gtatttagat cagggtatgt ttgcgctttt
    10741 ttggcttatc attatcgttg cagcttgcga tagtggggcg tattttatcg gaaaacttat
    10801 gggtaaaact cctttttctc caacaagtcc aaataaaacc ttagaaggtg ttataggtgg
    10861 tttgatttgt gcgagtgtta ttggaactat tttgggagtt tttgtttata gtttttggct
    10921 ttctttactt tgttcgtttt ttgtagcgat ttttgcagtg attggagatt tgcttgagag
    10981 ttattttaaa agagaagcag gtgtaaaaga tagtggagat cttatccctg gtcatggagg
    11041 tgtgcttgat aggatcgatg cagtgatcat tgctgctttt gtgatggttg cttttttatg
    11101 atactttttg gaagcacggg cagcatagga gtaaacgctc ttaaacttgc tgctttaaaa
    11161 aacattcgta tttctgcttt agcttgcggg gataacatcg ctcttttaaa tgaacaaatc
    11221 gcaaggttta aacccaaatt tgttgccata aaagattcaa aaaataagca tttagttaaa
    11281 cacgatagag tttttatagg gcaagaaggt ttagagcaaa ttttaacaga atgtcaagat
    11341 aagcttttac tcaatgccat tgtaggtttt gcaggactta aaagcacttt aaaggctaaa
    11401 gagcttggca aaaacatagc tttagctaac aaagaaagtc ttgtagtagc tgggagtttt
    11461 ttgaaagggg ctaaattttt acccgttgat agtgagcatg cagctttaaa atttttactc
    11521 gaaggtaaaa aaaatatagc aaaactttat atcacagcaa gcggcggagc tttttataag
    11581 tataaaatca aagatttaaa tcaagtcagt gtcaaagatg ctttaaaaca tcctaattgg
    11641 aacatgggag caaagatcac tatagatagt gcgactatgg caaataagct ttttgagatt
    11701 atagaggctt atcatttata tgattttaaa gaaattgatg ctttaataga accaagatct
    11761 ttagtgcatg caatgtgtga atttaaaaat ggagctagca cggcgtattt ttcaaaagca
    11821 gatatgaaac tagctatttc agatgctata tttgaaaaac aagatacgcc tattttagag
    11881 gctattgatt ttagtaaaat acctgcttta aaatttcatc caatcagcac aaaaaaatac
    11941 cctattttta agcttaaaaa tacattttta aaagagccaa atttaggtgt tatcatcaat
    12001 gctgctaatg aagttggtgt ttataatttt ttagaaaata aaagtggatt tttagacatt
    12061 gctaaatgca tttttaaagc ccttgatcat tttggagtac ctaaaatttc aagcatagaa
    12121 gaagtttttg agtatgattt taaaacaaga gagtatttaa ggagttaaaa tgaaattttt
    12181 tttaacaatt ttatttttta taacaagcat ttttgcttta gagctagact ttagcgtagg
    12241 agaaaatgga aaaagtctag atgataataa tacagtttta atttttggtg gaattcaagg
    12301 cgatgagcct ggtggatttc atgcggcaag tttgcttttg agtgattata atatcactaa
    12361 gggtaagatt atagtggctc caaatttagc ttttgatagc attatcaagc gttctcgtgg
    12421 gaataatggg gatttaaacc gtaaatttgc aagcattagc ccaaaagatc ctgattataa
    12481 aaccgttcaa cgcattaaag agcttatttt acttcctgaa gttagtatgg tgatcaatct
    12541 tcacgatggt tggggttttt ataaacctac ttatatcgat gcgatgcaaa atcctaagcg
    12601 ttggggaaat tcaagtgtga ttgatacaag cgaaatcaat gcaagcaaat accctgatct
    12661 tgaaaatatc gccactcaaa ccgtaaatag tgtcaattct tcacttgctg atccaaagca
    12721 tgcttatcat cttaaaaaca ccaaaaccca agagcttggc gatacggaaa tgcttaaagc
    12781 tttaacttat tttgtgattt caaatcacaa agccgctttt gcaaatgaag caagtaaaaa
    12841 tctgcctgta aatttaagag cttattatca tcttttggca attgaaaatt atttaaaaac
    12901 tgcaggaatt gaatttagca gagatttcga actcactcca caaggggttg ataaagccat
    12961 aaaccgagag cttgaagtga agctttttaa tgatagaatt ttactttctt taaaaaatcc
    13021 aagaaaggtt atcaactatg tgccttttcc ggtaaataaa gagttaaatt ataacacaag
    13081 taatgaactt actgctgtta tcgcagaagg aaattctttt tatatccagt atggcaatcg
    13141 ttttcaaaca agattatatc ctgagtattt agaatttagc gatgctttta atgaggtaac
    13201 ttttcaagtt gatggcaatg aaaccaccgt tccttttgga accaaggtga aagtaaaaga
    13261 gaattttctt attccaaaga tagctaatgt gcgcgtaaat atcataggct ttgatcactc
    13321 aaaagatgaa agtggtattt tagttcataa aaaaaatatg caaacacaat attctttaga
    13381 catggcaggt aaaatttata gagtggaatt ttatgagtta agaggtgcaa atttgcaaca
    13441 acttttagag gcaaatatca atagcaagtt gatcaaaaac gctaaaaatt tggatttaaa
    13501 tactcttaaa atggcaagat caaaagataa attcttaggt tctattttag tggaatttga
    13561 atgaaaaatc ttatcctagc tatagaaagt tcttgtgatg atagttctat agctatcatt
    13621 gataaaaata ccttagaatg taaatttcat aaaaaaattt cccaagaatt agatcatagt
    13681 atctatgggg gagtggtacc tgaacttgct gcaagacttc atagcgaggc tttgccaaag
    13741 atacttaagc aatgcaaaga gcattttaaa aatctttgtg ccatagctgt gacaaatgaa
    13801 cctgggctta gcgtttcttt gctcagtgga atttctatgg caaaaacctt agcaagtgct
    13861 ctaaatttac ccttaatccc tataaatcat cttaaaggtc atatttatag tcttttttta
    13921 gaagaaaaaa tttctttaga tatgggaatt ttacttgtta gtggtgggca cactatggtg
    13981 ctttatctta aagatgatgc aagcttagag cttttagcaa gtacaaatga tgatagcttt
    14041 ggagaaagtt ttgataaagt ggctaaaatg atgaatttag gttatcctgg tggggtcatc
    14101 atagaaaatt tagcaaaaaa cgccaaactt aaaaatatct cttttaatat acctttaaag
    14161 cattctaaag aactcgctta tagtttttca gggcttaaaa atgcagtgcg tttggaaatt
    14221 ttaaagcatg aaaatttaag cgatgatata aaagcagaaa tagcttatgc ctttgaaaat
    14281 acagcttgtg atcatatcat ggataaatta gaaaaaattt ttaatcttta taaatttaaa
    14341 aattttggcg ttgtaggtgg agctagtgca aatcttaact tgcgttcgcg tttgcaaaat
    14401 ttatgtcaaa aatataatac aaatttaaaa ctagctcctt taaaattctg ctctgataat
    14461 gctttgatga tagcaagagc tgcggttgat gcttatgaaa aaaaggaatt tgtaagcata
    14521 gaagaagata ttttaagccc taaaaataaa aatttttcaa ggatataaat gaaaaaagct
    14581 tttaccatat tagaacttgt ttttgtgatt gttattttag gaattttagc cgctattgct
    14641 ttaccaaaaa tgagttcaag taaggatgaa gctgaagtta gtaagtcttt aaataacctt
    14701 aaaactttga tcaacgatat aagcatttat actttaaaaa aggatcattt aagctctata
    14761 aaaacgatga gtaatgtaag tggggttgaa aatgtcgatc ttggcaattt taatggcaca
    14821 aaagaagtaa attttcgcgt aggcgatgat aaagaatgct taaaacttct ttttataaat
    14881 aaagctgatt ttatactcat gggaatttca agcaatgaag caagtaaaaa tgctatcatt
    14941 aacgcagcca atcaaagcca tgaagattta gaaaatatag actttacaag ctcttctagt
    15001 aataaagctt gtgtgatctt aagtaagaat gaaaatttta aaaacctagc gagtaaaact
    15061 tatcttttaa tagggggaat gtaatgatag tgagtaaaac ttatgagatt gactcttgtg
    15121 atgatgtaga acttgatata aaaagagaat caaagcttga atttaagctt tgttttgatg
    15181 atgaaaaaga aataaaagct ttagtgttta tcatccctgg gcttggtgga gatgtggatg
    15241 aaaattaccg tgaacactta gctgaatttg tagcaggcga atttaatgtg gctgtagcaa
    15301 gtgtgaatta tcattgtata ggtaatcgtc ctcaaactgg atcaactttt tatttagatg
    15361 acatagacaa gcttatttta aaagtaagtt gtgaagctgc ggatatcaag cttccttatg
    15421 atgttgataa aattcaagat tataaacaaa tgagtgaaat ttttcatttt gtaaataatc
    15481 aaatagttga aggtaagcaa aaaggtaatt ttacaccaaa ttattttcta aatttacatg
    15541 tgagtttgca acctgcaaaa aacgaatatc aaaattttgg aatcatgcaa gctcaagatc
    15601 ttttaaatgt tgcactttat cttaaaaaac atgctccttt tgatactatg gggggggggt
    15661 ataccagtta tcatgatagg tagttctcac gggggatatt tagcgcattt ggcggctaag
    15721 attgcacctt ggctaataga tggagttata gataactcaa gttatgctaa atttctttgg
    15781 cgtcttatag gttttggaaa ggaaatggat tttgtgcaat atagcgaatt ttctactttt
    15841 gatttttttc atcatattaa aacacattgc tcgacaaaaa ctttttggac aagtaattca
    15901 agttcaaata attttttttc aataccaagg agaatgataa gatatatctt agaaccaaag
    15961 catcttgaaa ttcaaacaaa ttatccaaaa ccatgctata caagttatca ttctttttat
    16021 gataaagaaa tagctccacc tgatgaaaaa ttagaacttt acaaatattt agaacaattt
    16081 gggtttgatg cagagcttta tatgataaaa aatccagatc aagttgatgg tagatttatc
    16141 aaaagtttag aacatggcat gggaatgtct ataaaaactt taatttccaa agaacttcct
    16201 ttaatgctag aaaaaataaa acaaaatcca aaaaaagatt gtaaagaaaa atacatctct
    16261 tatccttgtg aggatttgtt gtataaattt agcgaaaaag atgacaaaat atcactaaaa
    16321 atagataaaa tttaaggaaa tctaatgacc atactagaaa aaaacataca agctttatta
    16381 agtggggtaa atgaaccctt aggaaataaa cttttaaaat tcatacaaaa taaaacttgt
    16441 tttcgtttta gtatagatga aaatttgaat atctatgata aaactcataa tgttttcatg
    16501 tatgaaaact tagaagaaga attaaatttt ttctatcaag gtattttaga aaaaactcct
    16561 agatatcctt ttatatgtat ttatggtata ggcaatgctt tactgattaa aaatttagct
    16621 aaacactata aacatctttt tgtatttgaa agtgaaatag aactttttat cctagcttta
    16681 agcacgatag atttgagtga agagctttgt agtggaaaaa tttatcttgt ggatgtttgt
    16741 gagccaaaaa tggagcttca gcttagtata ttatttgatc aaaaagatat gttcgaatgg
    16801 ttaaatcttt atgaaatgtt tataagttgt aatttttata aaatgtatta tcaagatgtt
    16861 atattgaaaa ctgatcaaac atgtatggat aatatttttg tggttattag aaattttgat
    16921 cccaatgatc aattaacaac tatttgctat aagcagtttt tgcaaaatat accccattta
    16981 ttacaaaata taccttttca aagactttta agcgagcgta aggccaaatt tgatacagcc
    17041 gttgtagttt cagctggtcc tagtcttcat aaacaacttg ctttgttaag acaatatcaa
    17101 gaaaatgtag ttattttttg tgcagatggt gctttaaata tgcttgaaaa tgagggtatt
    17161 gttgcagact atgtattgaa tttggatata gaagatttgg cagtgaaatt ttttaattgt
    17221 tcaaaatcct tagattattc taaaaccata gcggttttag cggtcaatac gcaccctaat
    17281 gtgatagatt gtttaataaa taaatttctt tattgtatcg cgctaagaga tgagtattta
    17341 tataagcagt ttcatttgga tgattttggt tatatagata caggtaccca tgtaagccat
    17401 ttttcttata ctttagcttt ggctttagga tttaaaaata tcattatgat aggacaagat
    17461 ttagcttttg ataaagatgg aaattctcac tctaaaggtt ttgcatttgg tgaaaattca
    17521 aatgctgaaa aaaattttca acttcttcaa gtcccatctt attataagga tggtaataaa
    17581 gttaccactc atgttagctg gaatgattat cgcataaagc tggaatatct tattgcaaga
    17641 aatagcgaga taaattttta caatgctaca gaggggggtg cttatattaa ttttgcaaag
    17701 aatacaagtt tcaaggaatg ttgtgaaaaa ttttttactc agaaaaaacc ttgctttgat
    17761 attccaaaaa cttttactta taatcgttca cttaaatttt tatctaaagt ttttttgcat
    17821 ttaaaaaatg accttcaaaa cgctcaagat attttgcgag atgctcattt gctaaataat
    17881 gtcttaattg gcgtagtaaa tataaaaaat cctctgcctt tagatttttt gcaaaatatt
    17941 tacaaaagta tcggtgattt taattctgtt ttagatgatg ataagtttat acaggatggt
    18001 attttaaaag gggtattgta ttatcgtggg agttttttat ctgaagctat aaaaaaagat
    18061 ttgaaagatg aggcgtatta tcttttaaat tttattagcg cttatcaaaa atggcttgaa
    18121 aagtttattg agaggctaga aataaaaaat gccatcataa aagatacagt gttaaaatat
    18181 ggaaatttga tataaaattt tataaaaact ctaaactatt tttcctttta aacgatatag
    18241 tttataacaa gttcatggat ggacttgaat ttatttaaaa ggatttaaaa tgggatttcg
    18301 tattaacaca aatgttgcag cattaaatgc taaagcaaat tcggatctaa acagcagagc
    18361 attagatcaa tcactttcaa gactcagttc aggtcttaga atcaactccg cagcagatga
    18421 tgcttcaggg atggcgatag cagatagttt aagatctcag gcaaatactt tgggtcaggc
    18481 tatatctaat ggtaatgatg ctttaggtat cttgcaaact gcagataagg ctatggatga
    18541 gcaacttaaa atcttagata ccatcaagac taaagcgact caagctgctc aagatggtca
    18601 aagcttaaaa acaagaacta tgcttcaagc agacatcaac cgtttgatgg aagaacttga
    18661 taatatcgca aataccactt catttaatgg caaacaactt ttaagtggtg gttttaccaa
    18721 tcaagaattc caaatcggtt caagttcaaa tcaaactatt aaagcaagta taggagcaac
    18781 tcagtcttct aaaatcggtg taacaagatt tgaaacaggt tcacaaagtt tttcttcagg
    18841 cactgtagga cttgctatta aaaactacaa cggtatcgaa gattttaaat ttcaaaatgt
    18901 agtgatttct acttctgtag gaacaggtct tggagctttg gctgaagaga tcaacagaaa
    18961 tgcagataaa acaggaattc gtgcaacttt tgatgtaaaa tctgtaggag cctatgcaat
    19021 aaaagcagga aatacttctc aggattttgc tatcaatggg gttgttatag gtaaggttga
    19081 ttattcagat ggtgatgaga atggttcttt aatttcagct atcaatgctg taaaagatac
    19141 aactggtgtt caagcctcta aagatgaaaa tggtaaactt gttcttactt cggc
//
LOCUS       DAPIWV010000020        18361 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.021, whole genome shotgun sequence.
ACCESSION   DAPIWV010000020 DAPIWV010000000
VERSION     DAPIWV010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18361
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.021"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            48..329
                     /locus_tag="RJ272_000491"
                     /pseudo
     CDS             48..329
                     /locus_tag="RJ272_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782082.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            336..635
                     /locus_tag="RJ272_000492"
     CDS             336..635
                     /locus_tag="RJ272_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7381610.1"
                     /translation="MALGLILCALVNVLLGFSNSFYAYVGFVIALGVFQGMGVGPSFI
                     TLANWYPKKERGIYTAVWNISHNIGGGIVAPIVSLSGFALAAFLGVSLADFNETH"
     gene            672..854
                     /locus_tag="RJ272_000493"
                     /pseudo
     CDS             672..854
                     /locus_tag="RJ272_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778094.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1559..2311
                     /gene="peb3"
                     /locus_tag="RJ272_000494"
     CDS             1559..2311
                     /gene="peb3"
                     /locus_tag="RJ272_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HDV7381611.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            2408..3502
                     /locus_tag="RJ272_000495"
     CDS             2408..3502
                     /locus_tag="RJ272_000495"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDV7381612.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDAVLCIDSPAFNI
                     PFAKALKKAGNKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            3514..3999
                     /gene="greA"
                     /locus_tag="RJ272_000496"
     CDS             3514..3999
                     /gene="greA"
                     /locus_tag="RJ272_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDV7381613.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIARAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            4132..4767
                     /locus_tag="RJ272_000497"
     CDS             4132..4767
                     /locus_tag="RJ272_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDV7381614.1"
                     /translation="MGDIFDLLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDF
                     NLSCFFKKVKIFNLQKQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTL
                     RNHYLLVFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWV
                     CEGHYHQNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            4760..5716
                     /locus_tag="RJ272_000498"
     CDS             4760..5716
                     /locus_tag="RJ272_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HDV7381615.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIIFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            5720..8029
                     /locus_tag="RJ272_000499"
     CDS             5720..8029
                     /locus_tag="RJ272_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7381616.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAEPEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNVAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            8034..8555
                     /locus_tag="RJ272_000500"
     CDS             8034..8555
                     /locus_tag="RJ272_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HDV7381617.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            8555..9178
                     /gene="serB"
                     /locus_tag="RJ272_000501"
     CDS             8555..9178
                     /gene="serB"
                     /locus_tag="RJ272_000501"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDV7381618.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            9178..10155
                     /locus_tag="RJ272_000502"
     CDS             9178..10155
                     /locus_tag="RJ272_000502"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDV7381619.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQNEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(10156..10578)
                     /locus_tag="RJ272_000503"
     CDS             complement(10156..10578)
                     /locus_tag="RJ272_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HDV7381620.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(10575..13844)
                     /gene="carB"
                     /locus_tag="RJ272_000504"
     CDS             complement(10575..13844)
                     /gene="carB"
                     /locus_tag="RJ272_000504"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDV7381621.1"
                     /translation="MPKRTDIKNILLIGSGPIVIGQACEFDYSGTQAAKTLKEQGYRV
                     VLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAVNPTNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(14105..14854)
                     /gene="mreC"
                     /locus_tag="RJ272_000505"
     CDS             complement(14105..14854)
                     /gene="mreC"
                     /locus_tag="RJ272_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDV7381622.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(14844..15884)
                     /locus_tag="RJ272_000506"
     CDS             complement(14844..15884)
                     /locus_tag="RJ272_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDV7381623.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(15895..17118)
                     /gene="clpX"
                     /locus_tag="RJ272_000507"
     CDS             complement(15895..17118)
                     /gene="clpX"
                     /locus_tag="RJ272_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HDV7381624.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(17111..17902)
                     /gene="lpxA"
                     /locus_tag="RJ272_000508"
     CDS             complement(17111..17902)
                     /gene="lpxA"
                     /locus_tag="RJ272_000508"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDV7381625.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(17902..18342)
                     /gene="fabZ"
                     /locus_tag="RJ272_000509"
     CDS             complement(17902..18342)
                     /gene="fabZ"
                     /locus_tag="RJ272_000509"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDV7381626.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
BASE COUNT         6267 a         3102 c         2892 g         6100 t
ORIGIN      
        1 cattatttaa actataaaaa tataaagtta gtaaggatgg tttaaatatg tttgattttt
       61 tcaaacctaa ggcaaaagct attaaatttc ctctttagga aattttacct agatattaca
      121 aaatgagaac ttggagttta agtggggttt ttataggata tatgggatat tatcttgtgc
      181 gaaataatat cactctttca actccattta tacaaaatca acttaatctc agtaaatcag
      241 acatcggaac aatcacaggc tcaatgctta tagcttacgg gattagcaag ggtgcaatga
      301 gcgttataag cgacaaagct ggtcctaaaa aatacatggc tttaggtctt attttatgtg
      361 ctcttgtaaa tgttttactt ggtttttcaa attcttttta cgcttatgta ggttttgtta
      421 tcgcgcttgg ggtttttcaa ggtatggggg taggtccttc ttttatcact cttgcaaact
      481 ggtatcctaa aaaagagagg ggaatttaca cggccgtttg gaatatctca cataatatag
      541 gaggcgggat agttgctcct atagtgtcgc tttctggatt tgctttagca gcatttttag
      601 gcgtaagctt agcagatttt aatgaaacac attagcatat caatcatttt tatgttcctg
      661 ctttttgtgc tgtgcttatt agcctttata tgctttatgc agtcaaagga agtcctaaaa
      721 atgaaggttt ggttgatatt agcgaaatca acgaaatgag aggtattaaa accgaagaaa
      781 ttaaagctgt agaaagtcca aatttaagcg gtcttgaaat tttttatcat tatgtcctta
      841 aaaataaaaa tgcttggtat gtagcttgga tggatacttt tgtttatatg gtgcgttttg
      901 ggcttatttc ttggcttcct atttacttgc tagaaacaaa aggctttaat aaagaacaaa
      961 taggtattgc cttttggctt tttgaatggg ctgctatacc ttctacttta cttgcaggat
     1021 atatttcaga taaaattttt aaaggctata gaatgcctcc tgctataggc gccatggtga
     1081 ttattttctt tatgattatt ggatatttta cttcaaataa tctttatatg gttattttct
     1141 ttgcagctat ggcggggtgt ttagtctata taccacaatt tttagcaagt gtgcaaacta
     1201 tggaagtcgt tcctgctttt gcagtaggat cttgtgtagg atttcgtggc tttatgagtt
     1261 atgtagtcgg cgcttcactt ggaacaaaag ctataggttg ggctgtggat tactatggta
     1321 gttggaatgc tggtcttatc atgctcctta gtgcttgtat tctttgtata ctttgttcta
     1381 ctttatgtca ttttagcgct aaaaagaagc atcaataaca attttaactt ttgcttgcaa
     1441 aaataccaag caaaagttag atttaataat atttttgtta cattataact atttattaac
     1501 atacaatttc taaaatctta ccttcaatca ataaaaattt atcataaaag gaaatactat
     1561 gaaaaaaatt attactttat ttggtgcatg tgccttagct tttagtatgg caaatgcaga
     1621 tgtaaacctt tacggaccag gtggcccaca cacggcctta aaagatatag caaacaaata
     1681 tagcgaaaaa acaggcgtta aagtaaatgt aaattttggc cctcaagcga cttggtttga
     1741 aaaggctaaa aaagatgcag atattttatt tggcgcttca gatcaatcgg ctttagctat
     1801 agcgagtgat tttggaaaag attttaatgt gagtaaaatc aagcctttat attttagaga
     1861 agccatcata cttactcaaa aaggcaatcc tttaaaaatc aaaggtttaa aagatttggc
     1921 taataaaaaa gtaagaatcg ttgtgcctga aggtgctgga aagagcaata cttctggaac
     1981 tggagtttgg gaagatatga taggtagaac tcaagatata aaaaccatac aaaattttag
     2041 aaacaatatc gtggcctttg ttccaaatag tggaagtgca agaaagcttt tcgcacaaga
     2101 tcaagccgat gcttggatca cttggattga ctggtcaaaa agcaatcctg acataggaac
     2161 tgccgtagct atagaaaaag atttggttgt ttatagaact tttaatgtgg tagctaaaga
     2221 aggtgcgagc aaagaaacac aagattttat tgcttattta agttctaagg aagctaaaga
     2281 aatttttaaa aaatacggct ggagagaata aaccttcata cacgcttttt agcgtgtatt
     2341 cttgcataac ttcttttaat taagccaaaa taagataaaa tgtttaaaat attgataagg
     2401 aaattttttg aaaacctttt tagtttgtgc tttagagcct tcagcaaatt tgcatttaaa
     2461 agaagtttta aaagcttata aaaaagattt tggtgaattt gaacttcatg ggatttatga
     2521 tgagagttta tgcaaagaat ttgatttaaa ttctaaacca ctttatagct cacatgaatt
     2581 tagtgctatg ggttttatag aagttttacc tttgattttc aaagcaaaaa aagcgatcaa
     2641 agaattagtg aatctaactt taagccaaac aatggacgca gttttatgta tcgattctcc
     2701 cgcttttaat atcccttttg ccaaggcttt aaaaaaagca ggcaataaaa ttccacgcat
     2761 ttattatatc ttgcctcaag tttgggcgtg gaaaaaaggt cgcataccta tcatagaaag
     2821 tcattttgat attttagctt ctattttgcc ctttgataat caatttttta acaaaagcac
     2881 ctatataggc catccgcttt tagatgagat aaaagaattt aaaaatcaag aagacattaa
     2941 tcatacattt tcaaaaaaag atgatgaaaa aactatagcc tttttaccag gttcaaggcg
     3001 tagtgaaatt aggcgtttaa tgcctatttt taaagaactt tctcaaaaat ttaagggtga
     3061 aaaaattctt tgcgttccct catttaatct tgaaaaatta gaagtttatg gtgatattag
     3121 cgaatttaag atagaaagta acactccaaa agtgcttaaa aaagctgatt ttgcctttat
     3181 ttgtagtgga acagctactt tagaagcagc tttagtggga actccttttg ttcttgctta
     3241 caaggcaaag gctatcgata tttttatcgc aaaacttttt gtaaaattaa aacatatagg
     3301 acttgcaaat attttttgtg atttcgctgg aaaagaagct ttaaatcctg aatttttaca
     3361 agataaagtc aatgttttaa atttatatga agcttacaat aaatatgatt ataaggcatt
     3421 ttttgctaaa gttgattttt taaaagaata tttacaattt ggaagtgcta aaaatttagc
     3481 aaaaatccta aacgaaatat aaaagggtaa atcatgcaaa aagaaccaat gagtcaattt
     3541 ggctatgata agttagccgc agaattaaaa gatttaaaag acaatcaacg ccctgccgtt
     3601 gtaatagaaa tcgatacagc aagaagtcat ggggatttga aagaaaatgc tgaataccat
     3661 gctgcaagag aaaagcaagc tttgatagaa agtcgtattg cagagcttag tgacttgcta
     3721 gcaagagctc aagtaatcga tccttcgagc tatgaacacg atagtgtgaa atttggttca
     3781 agtgttgtga tcatggattt ggatacagaa aaagaaagca aatatactct agtaggaatt
     3841 tgcgaaggaa atttagataa gggttatatt tccatcgcat ctccaatagc aagagctatg
     3901 cttgggaaaa aagaagggga tgattttaaa gtgcgtttgc caaaaggtga gagtgaattt
     3961 gaaatccttt ctataaatta tgagccttta aaattttaag gataaaaaat tttactacaa
     4021 aatggagcga ttttaatcgc ggatgctcat gaaaatgaac aaagaaaggg attttgggaa
     4081 tttttacaag ccttaaaaaa aggtaaaatt tccacccctc aactcatact tatgggtgat
     4141 attttcgatt tacttatagg cgaaatctct gctacacatg aatttgctaa accttacata
     4201 gaacttttag aagaattagc cttaaagatt gaaattatat acttagaagg caatcatgat
     4261 tttaatcttt cttgtttttt taaaaaggta aaaattttta acttacaaaa gcagcccata
     4321 aagcttaatt tgcatacaag taaaggtaat aatcttgttt taaatagtgc ttttataaaa
     4381 ttagctcacg gagatatttt tttaccacct cttttgcaat ttactcttaa aacattaaga
     4441 aatcattatt tgcttgtatt tttgaatttt ttaaatatta ttactcgtaa ttttatttca
     4501 aataaaattc ttcaaaatca aaacaaaaaa aacctttttt atcaaataaa agattttgaa
     4561 aatttagcga aaaaaagata tgaaaaatat gaaaatttag gattttgggt atgtgaagga
     4621 cactatcatc aaaatcatca aatcaacaaa gaaaacatta aatatcttaa cttagctagt
     4681 tttgcatatg agagaagttt ttttgtagta gaatatcaac aagaaatcaa atttcgagaa
     4741 cagaaattga ggggtcaaaa tgtttgatga aaatatcgtg aaaacgggtt caaatgaaat
     4801 ggagcttgtc gatttccgta tctttaagca agggcacgat aaagtctatg aaggaattta
     4861 tggtgtaaat gtttctaagg taagggagat tataaaaatc ccaagcctta cagaacttcc
     4921 aggtgtacct gattacatcg aaggtatctt tgatcttcgt ggagtggtta tacctgtagt
     4981 caatcttgcc aaatggatgc aaatcactga gccagaaagc actatgctaa aacctagagt
     5041 tattattact gaatttagta atattcttat tggttttata gttcacgaag caaaaagaat
     5101 tcgtagaata aactggaaag atatagaacc agcaactttt tctacaggat caggtgcttt
     5161 agataaaggt aaaattacag gtgtaacacg cattgaaaat gatgaagtgt tgctaatttt
     5221 agatcttgaa agtgttgttg aagatttagg aatttacgct ccaaaaacag atatagattt
     5281 tggaaaaata gaaaaattta ctggaacagc acttatactt gatgacagca tgactgctag
     5341 aaaacgcgtc aaagaaatga tgcaacagat gggctttcaa gttgttgaag ctaaggacgg
     5401 cgtagagggc ataaacaaat tagaagaatt aagccaagtt tatggtgaaa gtttaaacga
     5461 tactttaaaa attatagtaa gcgatgtcga aatgccacaa atggatggtt tccactttgc
     5521 tgcacgcatt aaagaagatc caagatttaa agatattcct ataatcttta actcatcttt
     5581 atcaaatgaa tttatgaatg agaaaggtgt tcaagaagct ggtggagaag gctatcttgt
     5641 caaatttaac gctagcgatt tcttcaatga aattgcaaag gttattaaaa aacatcaatc
     5701 tcaagaacag gggtaaaata tggaagatat gcaagaaata cttgaagact ttttggttga
     5761 agcttttgag cttgttgagc aaatcgacca tgatttagta gagcttgaat caaatccaga
     5821 agatttagaa ttattaaata gaattttccg tgttgcacat acggttaaag gatcatcaag
     5881 cttcttaaat tttgatgttt taacaaagtt aactcaccac atggaggatg ttttaaacaa
     5941 agcaagacat ggcgagttaa aaataactcc agatatcatg gatgtggttt tagagtctat
     6001 tgatagaatg aaaactttac ttaattccat tcgtgataat ggcaacgata ctgctattgg
     6061 tatggatata gaaccaattt gcgcaagatt aacagctatt tcagagggag agtctcctgt
     6121 tgtggcaaca gattcaaatg aaaaatctac tccacaagca gaaccagaag caccaaaaca
     6181 agaaatagct actccagaac ctgaagtaga tgttaatcaa ttaagtgatt ctgaagttga
     6241 agctgaaata gaaagacttt taaaagttag aaaagctgaa gatcaagctc gtcgcgcaca
     6301 aaagaaacaa acaacaaatg tggcacctaa accgactaac aatacagcaa ataaacctac
     6361 ggaaagtgga gagaaaaaag ttcctgcttc aggtagtaat gctagcagta tggatcaaac
     6421 catacgcgtg gaggtaaaaa gattagatca cttaatgaat ctaattgggg agcttgtttt
     6481 aggcaaaaac cgtttgctta aaatttacga tgatgttgaa gagcgttatg aaggagaaaa
     6541 attccttgaa gaacttaatc aggttgtaag tcaattaagt attattacaa ctgatgttca
     6601 gcttgctgtg atgaaaacaa gaatgcaacc tatagcaaaa gttttcaata aattcccaag
     6661 agttgttcgt gatttaagtc gtgaattagg aaagcaaata gaacttgaaa ttacaggtga
     6721 agaaactgaa cttgataaat ctatcgtaga ggaaattggc gatcctatca tgcatatgat
     6781 tagaaattca tgtgatcatg gtgttgagga tccagcaact cgtgcagcga atggaaaacc
     6841 tgaaaaaggt atagtccaac ttaaagctta taatgagggc aatcacatcg ttgtagaaat
     6901 tacagatgac ggtaaaggac ttgatccaaa tggcttaaaa gcaaaagcta tagagaaaaa
     6961 tttgattacc gaaagagaag cagatcaaat gacagacaaa gaagcttttg ctttgatttt
     7021 caagcctggt ttttcaactg cggctaaagt aacaaatgtt tcaggtcgtg gcgtaggaat
     7081 ggatgttgtt aaaaccaaca tcgaaaaact taatggggta attgaaattg atagtgagtt
     7141 aggtaaagga agttcattta aacttaaaat tcctcttacc ttggcaatca ttcaatcttt
     7201 acttgtagga actcaagagg aattctatgc aattccactt gcaagcgttc ttgaaacagt
     7261 tagagtgcca attgatgata tctatactat cgaaggtaaa aatgtattac gcttaagaga
     7321 tgaagtgctt tctcttgtga gactttcaga tgtatttgga gttaaacaag tccttgaaag
     7381 cggtgatcaa acttatgtcg ttgttatagg ggtagcagaa agcaagcttg gtattatagt
     7441 agatactctt gtaggacaag aagaaatagt tattaaatcc atgggtgatt atttacaaaa
     7501 tatccaaggt atagcaggag ctacaatccg tggtgatggt agggtgacat taatcattga
     7561 tgtaggcgct atgatggata tggccaaaga aattaaagtt gatattaaag cgcaattaga
     7621 atcaagtgcg aaaaaaccta aagaacaacc aagtgattat aaagtcttaa ttgtagatga
     7681 ttctaaaatg gatagaactt taatgcaaaa agctttagaa ccgctaggag ttagtttaat
     7741 cgaagcaaca aatggtgttg aagcattgaa tattataaaa tctggcgaac atgatattga
     7801 tgcaatgctt atagatatcg aaatgccaag aatggatgga tacaccttag ctggtgaaat
     7861 tagaaagtat tctaaatatc gcaacttacc attgatagca gttacttcaa gaacaagtaa
     7921 aactgaccgt ttaagaggtg ttgaagtggg tatgactgaa tatatcacta aaccttattc
     7981 tccagaatac ttggaaaatg tggttagaaa aaatttgaaa ctaggataag aatatgagta
     8041 atgaaaaatt agagcaaatt ttgcaaaaac agcaaactca gatggctggt cctgatgtcg
     8101 atcaaagaga agatgatatc atccaacttg ttggctttgt agttggagat gaggaatatg
     8161 cgattccaat tcttaatata caagaaatca tcaaacctat agaatatact agagttccta
     8221 gtgtacctga ttatgttcta ggggttttta atatgcgtgg taatgttatg ccgctcattg
     8281 atctagctca acgctttcat ttaggaagtt ctaaaatgac acctcaaaca agatatattg
     8341 ttttaagagg tgagacaaat ggaactggag ttggaggaaa tgctggtttt gttatagata
     8401 gattaactga agcaattaaa attcacagaa acagaatcga tccaccacct gaaactttag
     8461 ttaaagacaa aggtatgatt tatggtatag gaaaaagaga tgaaaatatc ttaactatac
     8521 tcaaagtaga agctttactt aagcgcgaat tttaatgatt aaactttgtg tttttgactt
     8581 tgatgctact ttaatggatg gtgaaaccat cgatatttta gctacagcgc atggcaaggg
     8641 taatcaaaca agcgaaatta cccgccatgc tatgactgga gaacttgatt ttttcgaaag
     8701 tcttcaaaaa cgagtaagct ttttaaaagg tatgtcttat aaaaaagttt tagaattaag
     8761 tagcacactt ccactaatgc gtggagcaca tgaacttatc caatatttaa aatctaaaaa
     8821 tatacaaatt gttattttta gcggtggttt tcatgaaggc ataaatcctg ctatgcaaaa
     8881 acttggaatt aacctcggtt ttgcaaatta tctgcatcat aaaaatgaca ttttaacagg
     8941 gctagttggt ggggaaatga tgttttcaaa ttcaaaaggc ttaatgctac aacgattaaa
     9001 aagcttttta aatttgaaaa cagatgaagt gatgtgtgtt ggcgatgggg caaatgattt
     9061 ggcaatgttt aacgaaagtg gattaaagat tgcattttgt gctaaagaaa ttttacgttc
     9121 tcaagctgat atttgcatag atataaaaga cttaaaagaa ataataaagg taatataatg
     9181 aaaaattttt ctctttggtg tgattttata gaaaatagtt ttttagataa tgaattttta
     9241 aatttattat cacatggaat taatggcgct acttcaaatc ctgctatttt taaaaatgct
     9301 attttaaatt ctccaattta taaagataaa attcttaaat taaaagaaaa aaaaacaaaa
     9361 gatatttatg aagaattagc aatttctgat attcaaaaag cagctgataa attagctcct
     9421 cttttttatc aaaaaaatga tggatttata agtattgaaa tagatccaag acttcatgat
     9481 aacacgactc ttagtttagg cgaagctaaa agactttata gtgctattag caaagaaaat
     9541 gtaatgatta aaataccagc tacaaaagct tcttatgaag taatgtatga acttatgaaa
     9601 aatggtatta gcgtcaatgc taccttaatt ttttctcttg aacaaagtca aaaatgtttt
     9661 gaagctttaa atgcaggttt agtcgaattt agaaaaaaca atatagcctt aaaagaacaa
     9721 aatactagaa caccacaagc tgttataagt atttttgtaa gtcgttttga tagactttta
     9781 aatcctaagg ctaaggagca aaatcgtatt ggaattttaa atgcaaattt agcttataac
     9841 aatatctact caaaaaatga acctaatatt cgcgccttgt ttgcaagcac cggagttaaa
     9901 ggagatgatc tgccaaaaga ctattatatc aaagaacttc tttttgagaa ttctgttaat
     9961 actgctcctc ttgatgcaat agaggcattt aaaggaaaaa tgcattttaa aaaaccttta
    10021 atgaattttg aaatttatac agaacttaat caaatcattt ctcaaaatga acgagaaaaa
    10081 gcttgcaatg acttattaag tgacggccta gagcaatttt gtattgcttt tgaagatatt
    10141 ttaaaagctc tttaattaac gtatttttat cattttattc tttgaaagtt ttaatatttt
    10201 tgatgggata ttttcgaaaa atttctcatc aagtattata tcggcaacac ttctagccca
    10261 ttcttcatca aattcttttc catgcttgtt tgccgaagat gaataaaaat agccattttt
    10321 acttaaaaaa ttcgcatgtt tacactcttt cacaatacga atggcctgat tattgggata
    10381 aataaaagtt gtttttttag aacgacgtac taaattttta aaagattttg gaattcttgc
    10441 taaacttttt aactcgcaaa atttcgcaga agtgattaag caaggctgat ttttatctct
    10501 accttttaaa gcattaatct cttctaaatt tttacttaaa aatcctaccg tagtatctgt
    10561 ttgagctaaa taaatcaaga tttaagccac tcttgcaaac tctttacatc taggcaagat
    10621 ttactctgta tagctttaat cgattttgca cctgctaaag ctgatcgtaa atttgtaaaa
    10681 taaggtattt taaaacgaat aatattttca cgaatttttt tcgtatcgcc tttaaaactg
    10741 tgactatcgc ttgtattgat aactaagtga atttctccat ttttcaattt atcttcaaca
    10801 ttggggcgtc cttctgaaat tttatgtaca agttcgcact caaaaccact ttctaaaatt
    10861 tccttgcaag ttccccctgt tgccataagc ttaaagccaa gctttacata ttctgcagcg
    10921 atttttttgg tatatttttt atccttatct tttaaggaga taaataccac gccttgctct
    10981 ggaagatgat taaacgatgc aatttgactt ttcgcataag aatttgcaaa atccttgctt
    11041 atacccataa cttcacccgt tgaacgcatt tcaggaccta attctaaatc acttccacta
    11101 agttttgcaa atggaaatac tgcttctttc acgctcatat attttggagt tttagggcgt
    11161 aaaattttag tatcaaaatt aaccacttta aaagtatcat aaaattttaa agcttctttt
    11221 aaatttcctt gccacatcac acgcgttgcc acttttgcta aaggaatacc cgtagcttta
    11281 ctaacaaaag gtatggtacg actagctcta ggatttacct ctatcatata aagctcatta
    11341 ttatgtaaag caaattgtat atttaaaagt cctacaactc ccaaatttaa agcaatatct
    11401 gcggtttttt gtgcaataaa ttcttgcatt ttttcatcga tattgcaagg cggcaaagaa
    11461 caagcactgt cacccgaatg aattcctgct tcttctatgt gctccataat tcctgcaaca
    11521 taaacatctt tgccatcaca aatcgcatca acatcaattt ctgtagcatt gtctaaaaac
    11581 tgatcgatca aaacagggct tttatcgctt acatccacag cttcttgcat atagagtcta
    11641 agttcagcct catcatttac cacgcgcatc gcacgcccac ctaaaacata acttggtctt
    11701 acaagcacag gataccctat atcactagcc ttaagaaccg cttcttctac gcttgttgca
    11761 gtagaatttt ttggctgatt gatacctagc tttgtaataa attcggcaaa tttctttcta
    11821 tcttctgcca tatcaattac tcttgcgcta gtacctataa tcttagctcc aaaagcactt
    11881 aaacgcttag caaatttcaa aggagtttgt ccaccaaaat gcacaatcac tccatcaggt
    11941 ttttcacgct caatcaccgc tcttaaatgt tcgaaatcaa taggctcgaa atacaaaata
    12001 tcacttgtat catagtcagt cgaaacggtt tcaggattac aattatacat aatagtttta
    12061 atacccatat ctttaagcgc aaaagaagca tgtacgcaag catagtcaaa ttctatacct
    12121 tgtcctatac ggtttggccc cccacctata atcatcactt ttttttcttt tttatcctta
    12181 gcatcgtttt tactttgagt gagttcgctt acattgatac ttgaataaag ataaggagtt
    12241 aaggcttcaa attcacccgc acaagtatcc acttcactaa attctgcgat gattttttgc
    12301 ttcattcttg cataataaat atcattttgg cttaattcta aattatcttt caaatttaca
    12361 agcaaggcta tcattttatc tgaaaagccc atagtttttg cttttctcaa aagagcctta
    12421 ttgtttaaaa tatccatatc aatttgttct tcaaaatcta caatttcttt aatctgtgtt
    12481 aaaaaccaag gatctatttt acaaagctca taaagttctt ctacgctaaa accttcccta
    12541 aaagcttgag caacataaag taaacgcttt tcattggcat tgcgaatttt aaaaacaaga
    12601 tcatttctat cttcaaattt taccctatca aaaccactta aagaacgctc aagcgaacaa
    12661 agtgcttttt gtatactttc tttaaaagtg cgtcctatag ccattacctc acccacactt
    12721 ttcatagctg tacctaaagt tgtatttgct cctggaaatt tttcaaaggt aaagcgagga
    12781 atttttgtta caatataatc aatcacaggc tcgaaagatg caggagttcc tgtaatatca
    12841 tttttaatct catctaagct aaaacctact gccaaaagtg ttgcaacctt tgctatagga
    12901 taacccgttg ctttagaagc tagggcgctt gatcttgaaa cccttggatt catttcaata
    12961 actatcattc taccatttgt tggattgaca gcaaattgca catttgatcc gcccgtatcg
    13021 acgcctattt cacgcaaaat ggcaaaagag gcattacgca taacttggta ttctttatca
    13081 gttaaagtaa gagcaggtgc aaccgtgata ctatctcctg tatgcactcc cataggatca
    13141 agattttcta tactacacac gataatgcaa ttatcatttt tatcgcggat aacctccatt
    13201 tcatactctt tccatccaag caaactttct tcgataagaa tttcatggat tggcgaaagt
    13261 gctaaggcag tattagcgag ttctttaaat tcatccatat tataaaccac accacttcca
    13321 gcacccccta aagtataaga agcacggatc atcaaaggaa agccgatttc atctacagct
    13381 tttaaagctt catcataatt atacgcgtac atagattttg acaaatccat gccgattttt
    13441 ttcatacatt ctttaaaaac ttgacgatct tcgccttttt taatcgcttc agggtttgca
    13501 cccaaaaact tcacatcacc taaaagtccg ctttcataaa cttccatagc tacatttaga
    13561 gccacttgtc cacccatggt tggcaaaatg gcatcgattt tctctttttt aataatactt
    13621 aaaatacttt ccttggttac aggctctata taagtagcat cagcaaattc aggatcagtc
    13681 ataatagtcg ctgggttaga attgattaaa actacgcgat acccttgttc ttttaaagtt
    13741 tttgctgctt gagttcctga ataatcaaat tcacaagctt gacctataac gataggacca
    13801 cttcctataa gtaaaatatt tttaatatct gttcgttttg gcatgaattt tcctaagagc
    13861 ataaatttgg gctgattata acaaaaatta gttttataaa ctttgaaatt atcgatataa
    13921 ttttaaaaaa taaacactct gcttttaatc taggaaataa tacataaaga aatttaagat
    13981 tttttataaa attctcattc aattataaac atttatttga taatttaaca aaatttttag
    14041 cattaaacaa agttataata attagcaaaa atatagaaaa tttttaaaaa gtctaatcct
    14101 tgacttataa attatctact acatataaat aagcaggaat actaatctta acataaggct
    14161 ttacttctac actttgatac atatcttcat cattaactct attcacaata ccgacaggta
    14221 tatctgaaaa gaaaatatta tcaagtccac ttgttaaaat ttcatctccg gtattaattt
    14281 ttgcccattt tggaataaat ttaaccacaa tcctgccatc ttcaccctgg attaaacctg
    14341 gagctttgga ttttcctata taaacagaaa aaacacactg atcatcacct tgtaagagag
    14401 ccattgctct accattttta ttaatagcta tacctgcagt atatccttga tatattaaac
    14461 cacgattttt accaactgga attttgctcc aatctaacca taatttttta taatcattca
    14521 attgaacgta agaaataact ctagttaaag aaacttgagg taaatatttt gtagaatttt
    14581 gatcctctaa aatacgattt aattgatttg caaaactagt tacctttaca gcaatatctt
    14641 ctaattcttt atttctagct tttagttgct gaatttgatt tgcttgatta aagtgttctg
    14701 aaattttttt tcccaaataa tctttaatat tataaaaatt acctataaca aaatcattaa
    14761 cacggagaac attttgcttg ataagtcctc cataataaaa agatataaaa accaaaaagg
    14821 ctaagacaag aacataaaaa atcttattct tcattggtta attgttgcaa taatgaaatt
    14881 tcctctaaag ctttacccgt tccttttgct acagctaaaa gcggttcatc tgcgatataa
    14941 actggcaaac gtacaatttc acttaagtat ttatcaaaac cacgaatcaa tgctccacca
    15001 cctgttaaaa ctacaccatt ttctactata tcacttgcta aatcaggcgg catcatttca
    15061 agaaccattt ttaaagcatc agcaatttct tttaaatact cacgcattgc ttctcttaca
    15121 tcttcacttg taagttcaat acgacttaaa agtccactta cttgatcgcg tccttttacc
    15181 accatagaaa gttcttttgg aagttgtatt gctgaaccta tggtgatttt gatctcttcg
    15241 cctgttcttt cacctatgat aagattgtat ttttctttta cataattaac tatactcata
    15301 tcaagcttat ctccagccgt acgaatagac tttgaaatca caagtccacc caaagaaatc
    15361 actccgatct cagtagttcc accccctata tctactacca aatttccttt aggttcttgt
    15421 ataggtaaac ttgcaccaat agctgctgcc ataggctctt cgatcaaaaa tacctctctt
    15481 gcacctgcac ttaaagcact ttctcttacc gcttttcttt ctacttgagt taaaccataa
    15541 ggaacagaaa taataattct agggcgtaaa aaactttttc tacgatgtgt tttttctata
    15601 aaatagcgga tcattttttc agtcatatca aaatctgcaa tcacgccatc tttcatagga
    15661 cgaatagctt cgatattgcc tggagttttt cccaccatat ctttagcttc tttacctacg
    15721 gctaaaattt ttgctttgga accatacctt tctctttcaa ctgccacaac agaaggctcg
    15781 tttatcacta tacccttatc ttttaccaaa actagcgtat tagctgttcc taaatcaatc
    15841 cccatatcac tagaaaaaaa tcctataagt tgatctaata tcatttctat ccttttaact
    15901 tatttttctt tttattaata atgcctttgc attgtcttta acaacttctt tggttattac
    15961 aatatcatag tttttatact ctggtaactc aaacattaaa tctaccatca tttcttctat
    16021 aatacttcta agccccctag cccctgtttt tctctccaat gcaagctgtg cgatagctct
    16081 tagagcatct tcttcaaatt ttaaatttac cccatcaata gcaaaaagct tttgatattg
    16141 cttaataatg gcatttttag gctcagttaa aattcttacc atatcttctt cattaagctc
    16201 atttaaagat gcaatcacat gcaaacgacc tataagctca ggaatcaaac caaaatgcac
    16261 caaatcatca ggttcaattt tctcaagtaa agctttattt tcttcttttg catcatcaaa
    16321 aaagcccaca actttatcgc caagttttct ttttaagata gtttccaaac catcaaaagc
    16381 tccaccacaa acaaataaaa tatttgaagt gtcaatttgt ataaactctt gatttggatg
    16441 ttttcttccc ccttttggtg gaatatttac caaacttcct tcgataatct taagtaaagc
    16501 ttgttgcaca ccctctccac ttacatcacg agtaatagaa cgattttcac tcattctagc
    16561 aattttatca atctcatcaa taaaaactat acctttttga gctctttgca catctccatc
    16621 tgcagcttgt aaaagacgtg ttaaaatatt ttccacatcc tcacctacat atcctgcttc
    16681 agttaaagaa gttgcatcac aaattgctat aggtacatct aaaaatttag ctaaagtttg
    16741 cgccaataaa gtttttccac ttcctgttgg cccaacaagt aaaatatttg acttaaaaag
    16801 ctctgtatca tcatcttgaa gttcagcttt aaaaagtctt ttataatgat tgtatactcc
    16861 aacactaaaa acttttttag ctctatcttg tcctatgaca taacgatcta aataagcttt
    16921 taattctttt ggagtgatat ctttaaattc tgtattatga ctttgtttag gttctttaaa
    16981 ttctttttct tctccataaa taatactata agcaccttca acgcaatatt cacaaataaa
    17041 agcatcatca ttttcatttg ctaaaattct tctttgtgga ttctccactt cattgcaaaa
    17101 actacatttt ctaggcatta tttttacccc tatagacagg aattccacgc tttgtttcta
    17161 atataaaatg gcacattttt ttaacatttt cactttcttg attttcaagc aaatttttag
    17221 cattttcttt taaatctcct tgtctaaata aagttttaaa agctctacta agtctatcta
    17281 cttcatcttt atcaaaacga cgacgagtgc ctactaaatt taaacttcta atacttgcac
    17341 gatttccttc tgctaaacaa aacggtacta tatcctgaga aagtgcactt gctcctgcta
    17401 tcatacaacc ctcacctact ttgacaaatt gatgaatagg tgtaagcccg cctacaaccg
    17461 taaaatctcc aagctctaca tgtcctgcca aagttgcatt attagctaaa ataatattat
    17521 tacccaaaag acaatcatga gcaatatgac aataagccat aataaaagca ttatcgccta
    17581 tacgagtaaa accatctcct ttagctgtac ctgaatttat cgttgcaaat tctctaatag
    17641 ttgcattttt ccctataaca acaccgcttt tttgctcttc tttataagat atgtcctgag
    17701 gaatatcgcc tactattgca taagaaaata cacgagaatg atcacctata gttgtatctg
    17761 aaagaattcg agcaccttgt ttgatgacaa cattattacc tattttagca tctttgctta
    17821 cataagcata agcttctatt acaacatcgt caccaagttg tgcaccctct tcaatcaccg
    17881 cacttggatg aatttttttc attatttatc cactatcata gctttaagct cggcctctgc
    17941 aactaaattt ccatctacaa aagcttgccc tttaaaaatc cacatattac cacgattttt
    18001 aaccacgctc atttcataat caagcctatc tccaggacgc acaggatttc taaattttgc
    18061 tccatctatg cctgtgaaat aaactacttt actttttgga tccactttat cttccatact
    18121 ttcaaaagct aaaactccac ctgtttgagc cataccttct aaaatcaaaa ctccaggata
    18181 aataggatgc cctggaaaat gtcccataaa aacatgatca cttatactga tgtttttata
    18241 tcctcgtacc acttctttaa cttttaattc tgtaatttta tctactagta aaaaaggata
    18301 acggtgtggt aaaatttctt gaatttgcat tacatctatc attattaaat taaccttgaa
    18361 a
//
LOCUS       DAPIWV010000021        17895 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.022, whole genome shotgun sequence.
ACCESSION   DAPIWV010000021 DAPIWV010000000
VERSION     DAPIWV010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17895
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.022"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            45..1064
                     /locus_tag="RJ272_000510"
     CDS             45..1064
                     /locus_tag="RJ272_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381627.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNNTFNTSISE
                     NNQSLNNNTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            1087..3699
                     /locus_tag="RJ272_000511"
     CDS             1087..3699
                     /locus_tag="RJ272_000511"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDV7381628.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVDKEVILPISKKAIKIIADKHVEKDFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEARERIVAKLKSLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3704..4714
                     /locus_tag="RJ272_000512"
     CDS             3704..4714
                     /locus_tag="RJ272_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDV7381629.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNVKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4711..5622
                     /locus_tag="RJ272_000513"
     CDS             4711..5622
                     /locus_tag="RJ272_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7381630.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            5815..6588
                     /locus_tag="RJ272_000514"
     CDS             5815..6588
                     /locus_tag="RJ272_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7381631.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGIKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            6637..7407
                     /locus_tag="RJ272_000515"
     CDS             6637..7407
                     /locus_tag="RJ272_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7381632.1"
                     /translation="MNLFKIIILAYILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     HSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            7417..8193
                     /locus_tag="RJ272_000516"
     CDS             7417..8193
                     /locus_tag="RJ272_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7381633.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            8277..8939
                     /gene="flgA"
                     /locus_tag="RJ272_000517"
     CDS             8277..8939
                     /gene="flgA"
                     /locus_tag="RJ272_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HDV7381634.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            8936..9499
                     /locus_tag="RJ272_000518"
     CDS             8936..9499
                     /locus_tag="RJ272_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDV7381635.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            9539..10015
                     /gene="coaD"
                     /locus_tag="RJ272_000519"
     CDS             9539..10015
                     /gene="coaD"
                     /locus_tag="RJ272_000519"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDV7381636.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            10006..10584
                     /locus_tag="RJ272_000520"
     CDS             10006..10584
                     /locus_tag="RJ272_000520"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDV7381637.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDF
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            10581..11807
                     /locus_tag="RJ272_000521"
     CDS             10581..11807
                     /locus_tag="RJ272_000521"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDV7381638.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEKVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            11804..13639
                     /gene="speA"
                     /locus_tag="RJ272_000522"
     CDS             11804..13639
                     /gene="speA"
                     /locus_tag="RJ272_000522"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HDV7381639.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13640..14278
                     /gene="cysE"
                     /locus_tag="RJ272_000523"
     CDS             13640..14278
                     /gene="cysE"
                     /locus_tag="RJ272_000523"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDV7381640.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            14451..15620
                     /locus_tag="RJ272_000524"
     CDS             14451..15620
                     /locus_tag="RJ272_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDV7381641.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGKCDKDIEKMRQAFEKRRNLALDMLKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGTDGYFRLSYATSDELIEKGLERISHFIANYK"
     gene            15626..16414
                     /locus_tag="RJ272_000525"
     CDS             15626..16414
                     /locus_tag="RJ272_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDV7381642.1"
                     /translation="MKRPLPFILAATNNGSMIINHLDRHDTPQGSYGVGFQFLNYGSF
                     DPEEIDLCINLLKLRREYYKDNVFAIDCGANIGAHTIKWAIEMHNWGGVLAFEAQERL
                     FYALAGNIAINNCFNAKAIHAAIGNPEKNQNELEILTPDYTQKASFGSLELKSQNNNE
                     FIGQIPQKKEKVPYLKLDNLNFKRLDLIKIDVEGMEQEVILGCLNHIKTFKPILQIEI
                     IKSNTRDIINILENLEYEIFQSGINILAIYKADPVINHLSSSNP"
     gene            complement(16438..16779)
                     /locus_tag="RJ272_000526"
     CDS             complement(16438..16779)
                     /locus_tag="RJ272_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDV7381643.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(16849..17871)
                     /locus_tag="RJ272_000527"
     CDS             complement(16849..17871)
                     /locus_tag="RJ272_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7381644.1"
                     /translation="MNLSFKTFDISNTQRSKAKKVQGKKYEIFLNENEHSLITPKVSF
                     KEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPVF
                     NTHASPISFINKAFKNAPVYNVNDFNEIFAVIITHSHFDHLDAKSVKALKEKARFFIT
                     PLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWASFV
                     MEFLSVDKRVFFSADGGYFTHFKKIGEYFGDFDLACLESGQFNIAWPYSHSFPEQILK
                     EAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQD
                     FWWKEE"
BASE COUNT         6799 a         2605 c         2897 g         5594 t
ORIGIN      
        1 acaatgctaa aattatttaa ctttctgttt ttaagggata gcaaatgaat ttgaaaattt
       61 tttctattat tgttggcata ttaattgctg ttattgtaat attaggtgga acctattatt
      121 atctttttga atattcaaaa ccaaagaatt acaccttaaa taccaacact tacaccgaac
      181 aaaaatcgta taccaataac tacgataatt cctattcacc ctcgatccaa accaacaata
      241 gttcatcaga tataaatatt aataacaata ccatccaaaa gcaagaaaca aacctattag
      301 atgaaaatca aagcttaaat aacaatacat ttaatacatc aataagcgaa aacaatcaaa
      361 gcttaaataa taacaccaat acaagtaata atattaatac aaatgaaaat aagcaaattt
      421 tagatacgga taaagaaaaa ttaaaacaag aaaataaaca agccaaaata gaagctctta
      481 aaaaagaaat cagcaaacaa caaaagatct tagaaagaga aagagctgta aaaaaagaac
      541 ttcaatcaaa caaatcaaac aaaaataaat atctaaatac cgctagagag tatctaagca
      601 taggaaaaaa cagtcgttta gaacctgagc ttagcacaga aaatatgaaa gtttacattt
      661 tagatggaaa atttttaagc caatacagaa tcaatctgtt aaaagatatg ctaagcgtta
      721 tacaagataa tgcaaaagat tattatctaa gtatttttgt taaaatgcta ccaaaagggg
      781 aaatgaaatt aactatctat aacaaagaaa ttatcttttc agatatgaaa aaagcttata
      841 aatatattag tttagataga ttaagcccat atttaaacaa tccaaaagaa ttaaatgaac
      901 atgtagcacg tgaagaaatt ttagaaagac ttaaacttca aattaaaaaa gacggcaaag
      961 gaagtgattt ttctaaacat atcaaaagtt tgaaaactgg acttaataca gcacaatatt
     1021 tcttcccgtt ttgtgaaatt atagaaatta gctctattaa ataagctaaa acaataaagg
     1081 caaataatgt atgataaaaa tttagaaaaa gagtattatc aaatttgcga agaacgcgga
     1141 tattttgaaa tcgatggcaa taaaaccata caagaaaaag ataaaaattt ctgcattatg
     1201 atgcctcctc ctaatgtcac tggagtttta cacataggac atgctttaac ttttactctg
     1261 caagatatta tgacgcgtta caaaagaatg gatggctata aggttcttta tcaaccaggg
     1321 cttgatcacg caggtattgc cactcaaaat gttgtagaaa aacaactcct tgctcaaggc
     1381 attaaaaaag aagaactagg tagagagaaa tttatagaaa aagtctggga gtggaaagag
     1441 caaagcggtg gaaaaatttt agaccaaatg agaacactag gcatcactcc tgcatggagt
     1501 cgcttgcgtt ttactatgga tgaaggtttg gttaatgccg taaaaaaagc ctttgtagaa
     1561 ctttatgata aaagacttat tgtacgtgga aactacatga taaattggtg tacccatgat
     1621 ggcgctttaa gtgatataga agttgaatac aaagaaaaca aaggaaaact ttatcatatt
     1681 aaatactttt taaaagatag cgatgaattt ttagtagtag ccacaacgcg tcctgaaact
     1741 ttttttggcg atactgcagt tatggtgcat cctgatgatg aacgctatac taaatttgtg
     1801 gacaaagaag tgattttgcc tataagcaaa aaagccatta aaatcatagc cgataaacat
     1861 gtagaaaaag attttggaac aggagttgta aaagttactc ccgctcatga catgaacgat
     1921 tatgaagtag gacttagaca taatttagat tttataagtg tttttgatga aaaaggaatt
     1981 ttaaacgagc attgtttaga gtttcaaggt ttagaacgct tagaagcaag agaaagaatc
     2041 gtagccaaac ttaaaagtct tggttttata gaaaaaatag aagagcataa caatcaaata
     2101 ggatattgtt atcgttgcaa caatatagtt gaaccttata tctccaaaca atggtttgta
     2161 aaaaaagaaa tcgcccaaga aagtatagaa aaagttgcgc ttggagaaag caaattttac
     2221 ccaaatcact ggataaatag ctttaatgct tggatgaaag atttaagaga ttggtgtatt
     2281 tcaagacaac tttggtgggg gcatcaaatt cctgtgtatt attgcgaatg ctctcatgaa
     2341 tgggcaagcc aacatacgcc taaaacttgt ccaaaatgtc aaagtcaaaa tttcaaacaa
     2401 gatgaagatg tacttgatac ttggttttct tcaggacttt gggctatgag tactctaggc
     2461 tggggaaatg aaaattgggg taaagataaa atttggtctg aaaaggattt aaaagatttt
     2521 taccctaatt ctttactcat tacaggtttt gatattttat ttttctgggt ggctagaatg
     2581 atgtttcaaa gcactaatgc cttacatcaa cttcctttta aagatattta tttacatgct
     2641 cttgtgaaag atgagcaagg tagaaaaatg agtaaaagcc ttggaaatgt catcgatcca
     2701 aatgaaagca ttaaagaata tagtgctgat attttacgct ttactttagc acttcttgct
     2761 atacaaggac gcgatattaa acttagcaat gataaacttt tacaagttag aaattttaca
     2821 aataaaattt ataatgctac aaattatctg cttttaaatg aaagtaaatt tgaagatttg
     2881 gaaaatatca cacttcattc agaattagca aaatatattt atgccaaatt tcaaacttgt
     2941 gttaaggatg taagagaaaa tttagacaat tatcgcttta atgatgcagc caatactcta
     3001 tataaattct tttgggatga tttttgcgat tggggtatag agcttagcaa agccgaaaaa
     3061 tcgagcgtta aagaacttgg tagtattttc aaagaagctt taaaactttt aaatcctttc
     3121 atgcctttta tcagcgagta tttataccac aaactaagcg atacagaact taaaacaagc
     3181 ccttctatta tgataagcaa atatccaaaa tttaaagaac aagataaaaa tatagaaaaa
     3241 atcttttctt tgctcataga aagcatagtt agtatccgcc gtgctaaaag tttaatcgat
     3301 cttggaaatt ctaaaataga aaaagcttat atcaaattta acgataaaaa aatcaaagat
     3361 gaaatcaaag cttatatgaa ttttatcata atgctcgcaa agtgcgagca aatagaattt
     3421 agtgaagaaa aattaccaaa ggcaatatgt gatgttagcg agaatttaga aatttttatt
     3481 acgcttgaaa atgttgattt aagtggtatt ttaacaagac ttgaaaatca aaaaaataag
     3541 cttgaaaaag aaagtttcaa gcttaactcc atgctttcaa atgaaaaatt catcgctaac
     3601 gcacctaaag aggtggtgga gcaaaataaa gaagctctag aaaatttaaa aattcaactt
     3661 gaaaaaatat cagttgaact tcaaaatcta agaggttaaa aatttgataa aaataaaaaa
     3721 tttaaaaaaa tattatggca aggaactcgt gataaacgat gtttctttgg agattaaaaa
     3781 gggtgaaatt tacgccatag taggtcatag tggagctgga aaatccactc ttttaagatg
     3841 tattaatgga cttgagaatt atcaagaagg aagtttaaaa gtctttgatc aagaaattaa
     3901 agatttaagt caaaaaaaat caaaagagtt aagaatgctt agaaaagata tagggatgat
     3961 ttttcaaaat tttgccctaa tggagcgcaa aaatgtattt gaaaatgttg ctatgccttt
     4021 aagaacacac tatactcagt gtaaatttca tgccaagctt tttaataaag aatacatgag
     4081 cgaaaaagaa attgcccaaa aagtcaattc cttacttgaa atcgtagggc ttgatcataa
     4141 aaacaaatcc tacccaagag aactgagcgg agggcaaaaa caacgcgttg ctattgctag
     4201 agccttagct ttaaacccaa aaattttact tagtgacgaa gctacttcgg ctcttgatcc
     4261 aaacactaca aaaaatattt tagagcttat atctaaaatc aatgctgaat ttgggattac
     4321 tgttgtttta gtaactcacg aaatggatgt ggtaaaagac atagctcaaa aagctttatt
     4381 acttgaacat ggacaaatca taggaagtgg agcaattgat gagctttttt taaggcctaa
     4441 tgtcaaaatg aaagaatttt taggagaaag cgacttcttg cctgagcacg gacttaatat
     4501 caaactttac tttccaaaag aagttgccca aaatagcgtc atcactcata tggcaagaac
     4561 tctaaatata gactttaaca tagtttgggg taaaatagaa aaactgaatg gaaaagcctt
     4621 gggaaattta gttataaata taaatgaaaa ggataaagac aaggttcttg attacataga
     4681 aaaaagtgga gtattatggg aggtggcatc atgaatgaag aaaacatctc tattgtcagt
     4741 gcttttttta gtagaatttc tcaatttttt aatgaatttt cttggcagga tattaaagaa
     4801 gtgagtttaa gttctatcac gagtttcaat gaaaattatg aaaacatttt aaaacctgca
     4861 cttaatgaaa caatttatat gagtttaatg gctgtactat ttggattttt attggctatc
     4921 attcctggaa ttttacttgc tatttgggat aaaaatggaa ttaaagaaaa taaaatcgct
     4981 tatagtattt tagattttat taccaatata ttacgcgcct ttccattttt aattcttata
     5041 gttgttcttt taccactttc taaaatcata gtaggcacaa gcataggtac aaatgctgcc
     5101 atagttcctt tagctatcgg aatagctcct tatttggcaa agatgcttga aagcgctttt
     5161 aaagaaatag acaaaggaat catagaagca gcaaaaagtt atggtgctag caatattcaa
     5221 attatcttca aggttatctt tagtgaggcc cttcctgcta taattagcgg aattacccta
     5281 actttgatct ttaccattgg tttttctgct cttgctggaa ctgtcggtgg tggaggtttg
     5341 ggagatgtcg ctattcgcta tggttatgaa agatttaaca aagaagttat gattcaaact
     5401 gtagttattt tacttatatt agttcagtta gttcaaattc taggtaattt attttatact
     5461 tgggctaaaa atagtaaaac tacatatatc attgccactc tattgatttt acttggagtt
     5521 agtatagtta tcaatataaa caatgatgaa aatttctttt ggcaagtaat tgtttttatc
     5581 ttatttttag gaagtttgct ttataaaggt ttcaaaaaat aaggagatta tatctccttt
     5641 taagataaat ataagttttt ttaagtaaaa tttaaacaaa aaactataag gaattaaaat
     5701 gatgtatcag atgcgttaat ctgactatca acaagttttt atatacttct tcctgatagt
     5761 cagagtgaat ttattaagat taaagcaagc acaaaatgac taaaaaggaa aaaaatgaaa
     5821 atcaaatctt tatttatagc aagtatttta acattaagtc ttaatgcaaa tgcattagaa
     5881 accatcacag ttgcagcaac tcccgtccct catgctgaaa tcctagaaca agtaaaacct
     5941 gatttagaaa aacaaggcta taaacttgaa atcaaagaat ttacggatta tgttttacct
     6001 aatctagctg ttgataacgg agaagccgat gcaaattttt tccaacatac tccttatttg
     6061 gaagaattta ataaaaacaa aggcaccaaa cttatcaaag tagctgccat acacatagaa
     6121 cctatggctg tttactccaa aaaatacaaa agtctagatg atattaaaga agggattaaa
     6181 atcgccattc caaatgatcc aaccaatgaa agtagagctt tagatattat tgcaaaaaaa
     6241 ggtttggtaa aatttaaaga taaggcttta aaaacacctc ttgatattat agacaatcct
     6301 aaaaaaatta aatttgtaga attaaagccc gcacaacttc caagagcttt ggatgatgtt
     6361 gattttgctg taattaattc caactacgct ctctctgcaa atctaaatcc tgcaaaagat
     6421 agcgtattta tcgaagataa agaaagcccg tatgcaaaca ttcttgttgt aagagtggga
     6481 catgaaaacg atccaaaaat caaagcctta atccaagctc tacaaagtga taaaatcaaa
     6541 caatttatca tagaaaaata caacggatct gttttacctg ctttttaatt ttgtccctta
     6601 cctagggact tttttcttaa atacaaagga gtttttatga atttatttaa aattattata
     6661 ctcgcttata ttctaaattt atctagccta tttgcacaaa acattactat aggagccact
     6721 ccaaatcctt ttggtagctt actagaacta atgaaagatg attttaaaaa caaagggtat
     6781 gagcttaaaa tagtagaatt ttcagactat attttgccca atcgtgcatt agaggaaaaa
     6841 gaacttgatg caaatttata tcaacacaaa ccttttttag aagaatacaa cctaaaaaaa
     6901 ggttcaaatt taattgcaac aacgcctgta cttatagctc cagtaggagt ttatagtaaa
     6961 aaaatcaaaa atttagaaaa tcttaaagaa ggtgctagag ttgctatacc taatgatgcg
     7021 accaatgaaa gcagagcttt agagctttta gagaaagcaa aattaataga gcttaacaaa
     7081 aatactctaa aaaccccatt ggacataaac aaaaatccaa aaaaacttaa atttatagaa
     7141 cttaaagccg cacaacttcc aagagcttta gatgatgttg atattgctat aattaattct
     7201 aatttcgcac ttggagccgg tctgaatcca agtaaagata ctatttttag ggaagataaa
     7261 aatagccctt atgtaaatta tgttgtggta cactcagaag ataaaaatag cgaaaaaacc
     7321 aaagtaattg atgaaatttt aagaagcgat aaatttaaag ccatcattaa tgaacattat
     7381 aaagatatat taatcccagc tttttaggag tataatatga atattaaaaa aatattttta
     7441 agtgttttat ttacaattag ccttagtttt ggggcggata aaaccataat cataggtgca
     7501 acaccaacgc cttatgctga aattttaaat ttctctaaac ccttatttca agaaaaaggt
     7561 tggaagttaa tagttaagga atttaatgac tataatatac ctaacatcgc tttaaatgaa
     7621 aaagatttag atgcaaattt atatcagcat aaaccttttt tagatgattt taatacccac
     7681 aaaggaacaa aattaagttc tttaggtgct attgttttag ttcctatggc tatatattct
     7741 aactccataa aagatataaa agacattcct aatggtgcta aaatcgctat acctaatgat
     7801 gctaccaatg aaagcagagc tcttgattta ctagctaaag caaatttaat agagtttaaa
     7861 agtcaaagca cccttaaaac ccctattgac ataagtaaaa atccaaaaaa acttaaattt
     7921 atagagctta aagccgcaca acttccaaga gccctaaatg atactgattt ggctattatt
     7981 accacaaact atgctcttgg agcaggctta aaccctttaa aagatggtat ttttatggaa
     8041 gataaagata gtttatatgc tattgtttta gctacaagaa aaggtgaaga aacaagtcaa
     8101 aaaagtcttg ttattaaaga aattttaaca agcgataaaa ttaaaaattt tatcatagaa
     8161 aaatacaaag gctctgttat ccctactttt taactctata caaagccttc taaaggcttt
     8221 gttaaactta taaaagctaa aatactattt attgcattat aattcttagg ataaaaatga
     8281 aaattatttt tttaactttt tttattgtga taaattatat ccaagcagct agtttagaag
     8341 aaatcaaaac agcactagct aaagaattta gaaataattt tcctaaaatt ataatttctc
     8401 aaattgattt aaaaataaca tcattgccta aagattttga tcaatatgaa tttctaagaa
     8461 tcgctaatgg gcgttttaat caagcacaag gctttttaag ggctgaattt aaaactccgc
     8521 aaaatataca aaaaaatgta ttttttagat atttcattca agcaaattta gaagttttaa
     8581 aaagcgaacg cgctataaaa agaggagata aacttggagc ttttgactat aaaagcgtat
     8641 tgattgattt tgataaagtt cctttaaatg ccttaacctt agatgatgta gataatcttg
     8701 tagctaaaag caatattaac aaaaacgcca ttttaagagc aaatatgttt aaaaccacag
     8761 ctttaatacg ccgaaatgat cctataatcg ggattttaag cgaagcaaat gttgatgttt
     8821 taatcgaact tgtggctttg caaagtgcaa atatgggcga aaggattcgt gcaaaaaaca
     8881 aagaaggtaa agttatgcaa ggcatcgtag tgggtaaaaa taggatgatt atacaatgaa
     8941 ggttttatta ggaatttctg gttcaagcag tgtcaattta ggcttaaaat tattaaaaaa
     9001 tctagaaaac caatgcgaac tttattgcat tttaacccaa ggtgcaaaac ttagcttcaa
     9061 aactgaaaat caagcaaatt tagaagaaat ttgtcaagaa aattttaaat acacttattt
     9121 tttagatgat aaaaatttaa gtctaagtgt agcaagtgga tcttttggaa tagaaaaaac
     9181 catcattgct ccttgttcaa tttcaagttt agcaaaaatt cacgctggtt ttgcagacac
     9241 tcttttaatg cgtgctgcag cagtggcctt aaaagaaaga aaaaaactta tcttaggcgt
     9301 acgcgaaatg cctttttcta ctttaaattt agaacatatg ttaaaactta gccaaatggg
     9361 agttattatc gcccctccta ttatcgcaag ctattctaaa gcaaacaatc tagagcaaat
     9421 ggaaaatttt atcgcaggta aatggttaga tcttttagaa ataaaacaca atttatatga
     9481 aaaatggcaa aatttttagt ttaaatttgt tatattttta aaaaaaattg gagcaaaaat
     9541 gacttgttta tatcctggga cttttgatcc tattaccaac gggcatttag atgttataaa
     9601 acgggcttta aaaatttttg atgaagtcat cgttgccata gcaaaaagtg aacataaaaa
     9661 accttgctat gatttagaaa aacgcaaaga actagccctg ctcgcaacac aaaatttaaa
     9721 aaatgttaaa atcattgctt ttgataattt acttgtagat ttagccaaag aattaaaagt
     9781 taatactata atccgtggac ttagagcagt gagtgatttt gaatacgaat tgcaaattgg
     9841 ctatgcaaat cacgcacttt gggaagatat ggaaaccatt tatcttatgc caagtctaaa
     9901 acatgctttt atttcaagtt ctattgtgcg ttctatagta gcacatgggg gtgatgtaag
     9961 ttctcttgtt ccaaaagaaa ttctaccttt tttaaaggat caatcttgta tgtagttttt
    10021 gaaggtattg actgcgtagg aaaaagtacg caaatttcac ttttaaaaga aatttacaaa
    10081 gatgccattt tcacactcga acctggcgga acagaacttg gaaaacattt aagagaaatt
    10141 ttacttaata aaactcatcc tattaacaaa agagctgaac tcttgctttt tttagctgat
    10201 cgtgctcaac attttgaaga aatcttaaaa accaatcaaa acaaactcat tattagcgat
    10261 agaagtttta tttcaggcat ggcttatgcc aaagattttg aaaacgattt tctttttgct
    10321 ttaaatagtt ttgctttaga aaattttttt ccacaaaaaa ttatcttttt aaaaggagat
    10381 gcaaacctta tccaagaacg cctcagtcaa aaagaactag atagtataga aaaacgtggc
    10441 attgagtatt ttttaagtgt acaggacaaa ctcgaaaaag tgcttcattt tttaaaagaa
    10501 aaaatttctg tagaaatttt aacacttgac gcaaaagaaa gtaaagaaaa attacaccaa
    10561 caaataaagg aatttttaca atgattaacg ctttaaaagg aatgaaagat ttattagata
    10621 aagatgcata ttattatgaa aaagtgatta aaacctgcga aaaagtagct aaaaactatg
    10681 gctttacttt tatcaataca ccgcatttag aactttgcac cctttttaaa agaagcgtag
    10741 gagaaagttc tgatatagta ggtaaagaaa tgtatgaatt tatcgataaa ggtgaaaatc
    10801 atgtttgcat gcgtcctgaa ggaactgctg gggtggtgcg tgcctatata gaaaaaaaac
    10861 tcgataaaaa cactagtgtg aaaagatggt tttatcatgg ttctatgttt cgttatgaaa
    10921 gacctcaaaa gggtcgctta agagaatttc atcaatttgg agttgaaagc cttggcatac
    10981 ctaatgttta tgaagatgca agcattattt taatgctagt agaaattttc tcacgccttg
    11041 gtattgattt taaacttcaa cttaattctt taggctgctc acaatgcttg ccaaaatacc
    11101 gcgataggct cgttgaattc ttagattcca aagaaggttt ttgtgaagat tgtttgcgta
    11161 gaaaaaattt aaatcctatt cgtgtcttag attgtaaaaa tgagcattgt caaaatttgc
    11221 ttgaaaatgc tccgcttttg atcaataatt tatgcacctc ttgccaaaaa gactttgaaa
    11281 cactgcaaca aattttaaag gataatggag ttaaatttga gttagattca aaacttgtga
    11341 ggggtttgga ttattattct aaaacggctt ttgaatttat aagcgatgaa ataggagcaa
    11401 aggctgctat cgcaggtgga ggacgctacg atagacttat agagtattta ggtggaaaaa
    11461 gtggctatgg tataggtttt gccatgggta tagaaagaat tataactatt ttagaacaaa
    11521 aagaagaaaa gattcaaaga gaaggaattt atctttgtgc tatggatgaa atttatatcc
    11581 aaaaactttt gcatatcgct acaaatttaa gaaaagaata taaagtactt ttaagctatg
    11641 aagcaagaaa actagccaaa catcttgaaa acgcggataa aaataatact gaaatttttc
    11701 tttgcatggg agaaaatgaa gcacaaaatg aaagtttgtt ttataaaaat ttagcaaaaa
    11761 aagaagaaaa aatgattaaa atttcagact taaagaaggt tttatgatgg attatggtat
    11821 tgatatttgg ggaaatgaaa atttcattat caaaaatggt aaagtttgta tcaattacga
    11881 gaaaaaacct gctattattg atatagttaa agaattaaga gatgatggat acaaggggcc
    11941 tttactttta agatttcctc atcttatcca aaaacaaatt gaaaatattt acggaaattt
    12001 caataaagca agaaaggaat ttggctataa aggaggattt aacgctgttt atcctttaaa
    12061 ggtcaatcaa taccctggtt ttgtaaaaaa tcttgtaaaa cttggaaaag actataacta
    12121 tggacttgaa gcaggttcta aggcagagct tttactcgct atggcttata ataacgaagg
    12181 cgcacctatt accgtaaatg gctttaaaga tagagaactt atcaacatag gctttatcgc
    12241 agctgaaatg ggacataata tcactttaac catagaagga cttaatgaac ttgaagctat
    12301 catagacata gctaaagaac gctttaaacc taaaccaaat ataggcttac gcgtgcgttt
    12361 gcattctgct ggagttggaa tttgggcaaa aagtggtggg attaattcta aatttggact
    12421 tacatccact gaactcatag aagcggtaaa tttactcaaa gaaaacaaac ttttagaaca
    12481 atttaccatg attcactttc atctaggctc acaaattacc gaaattcacc ccttgaaaaa
    12541 agccttaaat gaagcaggaa atatctatac agaacttaga aaaatgggag ctaaaaatct
    12601 aaaagctatc aatcttggtg gcggtttagc tgtggaatac tcacaattta aaaatgaaaa
    12661 aagtagaaat tacaccctaa gagaatacgc taacgatgta gtttttatcc taaaaaacat
    12721 agccgaacaa aaaaaagatt tagagcctga tattttcata gaaagtggac gttttgtagc
    12781 agctaatcac gctgttttaa tcgctcctgt attagaactt ttttctcaag aatacgcaga
    12841 aaacaaactc atacttaaaa aacaaaatcc aaaacttatc gatgagcttt atgatcttta
    12901 taaaagtata aaaccttcca atgctttaga atacttgcac gatagcatag atcatttaga
    12961 gagtatttta actctttttg atttgggcta tgtggattta caagatcgtt ccaatgctga
    13021 aattttaact catttgatta caaaaaaagc catcttgctt ttaggcgata agcaaaatcc
    13081 tgcggattta cttgccatac aagatgaagt gcaagaaagg tatttggtaa atttttcgct
    13141 ctttcaaagc atgcctgatt tttggggttt agaacagaat ttccccatca tgccacttga
    13201 tcgcttagat gaagaaccga cacgaagtgc aagtatttgg gatataacct gtgatagcga
    13261 tggagaaatt tcatactcta aagataaacc tttatttttg cacgatgtag atgtagaaaa
    13321 agaaaattat tttctagggt tttttcttgt aggtgcctat caagaagtac ttggaatgaa
    13381 acacaatctt tttactcatc ctactgaagc tattataagc atcaatgaaa aaggctatga
    13441 agtcgagggg attatagaag cgcaatccat acttgatacc ttagaagatt tagactatga
    13501 tatacacgct atcatggata tacttaatga acgcataagt aattctaagc ttgtaaatga
    13561 taagcaaaaa aagcatattt taggcgaact ttatcttttc ttaaatgata atggttattt
    13621 aaaaagcata ggggtttaga tgaatttttg gggtattata aaagaagatt tttctcagcc
    13681 aaaggcacaa gatccagctt ttaattcttg tatagaactt ttttttaatt accctggagt
    13741 atgggctgta gtaaattacc gctttgcaca ttttttttac ataagaaatt ttaaacgcat
    13801 tgctagaatg attagcggaa tttcacaatt cttaactggg gtagatttgc accctggagc
    13861 agaacttgga aggcgtattt ttatagatca tgccaatgga gtggttatag gtcaaacagc
    13921 aattatagaa gatgatgttt taatttatca aggcgttact ttaggtggaa caagccttga
    13981 aaaaggtact aaacgccatc caaccataaa aaaaggagtg atcataggct caggcgcaaa
    14041 agtacttggc aatatcacca taggagaaaa tgccaaaata ggctcaaatg ctgtagtggt
    14101 taaagatgta ggtgcaaatt taactgccgt tggaattcct gcttatatta tcgaagagcg
    14161 taaaaataaa aacattagag ctatagatgc aaattgcgat gacaaactag aaaagttaga
    14221 aaagaaaatt ttagaacttg aaaatcttat attaaaacaa cctgaatcac aaaaataata
    14281 attttttata atacataaaa ttatatgtat tattatgcgt attaattttt cctaaaaaat
    14341 taatacaaat tttcacattt attgaaattt ataactcatt tttaaattaa atttattgta
    14401 aaaatgcaat tttctgctaa aattaaacaa aaattattaa ggattgaaaa atgcttacaa
    14461 aaagatctca agttttagaa gaatctatca ctttagctat cactgcactt gccaatgaac
    14521 ttaaagccaa aggcgaggat atcattagtt tttcagcggg tgaacctgat tttgacacac
    14581 cacaaaccat caaaaatgcc gctataagtg ctattgaaaa aggatgtgga aaatacactg
    14641 ctgttgcagg aattcctgaa gtattaaaag ctattcaaac caaatttaaa aaagataata
    14701 atcttgatta tgaaacaaat gaaatcatca ccaatgtagg tgcaaaacac tctctttttg
    14761 aatgtataga atgcttagta gaaaaagatg atgaagtgat tatccctagt ccttactggg
    14821 taagctatcc tgaaatggta aaatttgcag gtggaaaacc tgtatttata gaaggcttag
    14881 aagaaaatgg ctttaaaatt accgctgaac aactaaaaaa agctatcaca gctaaaacca
    14941 aggttttaat gttaaattct ccttcaaatc ctgtaggatc gatttattct aaagaagaat
    15001 taactcaaat tgctaaagtt ttagaaggaa ctcaaattac cgttttaagt gatgaaatgt
    15061 atgaaaaact tcgctatgat ggttttgatt ttgtagcttt tgcaagtgta agcgaagacg
    15121 ctttaaaacg tactgtgact attaacggac ttagcaaatg tggagctatg ccaggatggc
    15181 gttttggcta tatggcaagc aaaaataaag ccctaatttc agccgttaaa agacttcaag
    15241 gacaaagcac ttcaaatatt tgctccatta ctcaacatgc agccattcct gctttaaatg
    15301 ggaaatgtga taaagatata gaaaaaatgc gtcaagcctt tgaaaaacgc cgtaacttag
    15361 ctttagatat gcttaaacaa atcccaaata tcagtgttta taaaccagaa ggtgcttttt
    15421 atctttttgt aaatatacaa aaaatagaaa aagattctat gaaattttgc caaaaattac
    15481 ttgaacaaga aaaagttgcc gttgttccag gcataggttt tggcacggat ggatacttta
    15541 gactttctta tgccacaagc gatgaactca tcgaaaaagg tttagaaaga ataagtcatt
    15601 ttattgcaaa ttataagtag tttccatgaa aagaccttta ccttttatac ttgcagctac
    15661 aaataatgga tctatgatta ttaatcatct tgatagacat gatacgcctc aaggaagtta
    15721 tggagttggt tttcagtttt taaattacgg cagttttgat ccagaggaaa ttgatctttg
    15781 tattaatctt ttaaaattac gcagagaata ctacaaagat aatgtctttg ccatagattg
    15841 cggtgcaaat attggagctc acactattaa gtgggctata gaaatgcata actggggggg
    15901 ggtattagcc tttgaagcac aagaaagact tttttatgct ttagcaggaa atatagcaat
    15961 taataattgt tttaatgcta aggcaataca tgcagccatt ggaaaccctg aaaaaaatca
    16021 aaatgaactt gaaattttaa ctcctgatta tactcaaaaa gcttcttttg gaagcttaga
    16081 attaaaatct caaaacaata atgaatttat aggacaaata cctcaaaaaa aagaaaaagt
    16141 tccttattta aaacttgata atttaaattt taaaagatta gatcttatta aaatagatgt
    16201 agaaggcatg gaacaagaag ttatattagg atgtttaaat catattaaaa cttttaaacc
    16261 tattttacaa attgaaatta ttaaatcaaa cactcgagat attatcaata tattagaaaa
    16321 tttagaatat gaaatttttc aatccggaat taatatcttg gctatttata aggcagatcc
    16381 tgtaattaac catttaagtt cttcaaaccc ataaacctta aaataaaagg cttatggcta
    16441 aggcttttta agcacagcat ttaccctttg aacactatct gatttattta aactcaatct
    16501 tattatagaa ttttccaatc cacctaaaga atgcgctaca tttgcctcta ggcttatcat
    16561 atccaaagca tttaattcaa atttttcctt ttccacttca aaccaaattt taccgcttaa
    16621 aacttgaaca tgtatagcaa aaggagcttt atgctctttc atcacgctat ctttagctaa
    16681 taaaatttga atttctttac ctttttcatt atcaattaaa acattgattt tcacttcttt
    16741 tgggctaaat tccgctccat tccattgaat gattttcaca aaatctcctt ttttagtttt
    16801 ataaaactat agcaaaagcc aaaatataaa ttataaactt gtgttaattt attcttcttt
    16861 ccaccaaaaa tcctgtttaa atttagctcc tacttcataa gcctcgccca tttttggtgt
    16921 gataaggggt aaatctaaat tttcataaag aaattttacc acctcattcc atgcatgagt
    16981 tcctgctaaa aatctccccc aatgtatagg catgacagct tttgcattaa gatcttttgc
    17041 ttcttttaaa atttgctcag gaaaagagtg tgaatatggc caggcgatat taaattgtcc
    17101 gctttcaaga caagctaagt caaaatctcc aaaatactca cctatttttt taaaatgtgt
    17161 aaaataccct ccatctgcgc taaaaaacac tctcttatct acacttaaaa attccatcac
    17221 aaaagaagcc caaagggttt tgtttttacc atctcccctg cttgaactgt gttgtgcagg
    17281 tgttgcaatg atttttaaat caccaaattc tatgccgctc caccaatcaa gctctatgat
    17341 ttttttctca ctcaccccat agctttttag ataatttccc acttttaaag gtgtgataaa
    17401 aaatcgtgct ttttctttta aagctttgac actcttagca tctaaatgat caaaatgtga
    17461 atgcgtgata atcacagcaa aaatttcatt aaaatcattt acattataaa caggagcatt
    17521 tttaaaagcc ttgttaataa aagaaatagg cgaagcatga gtgttaaaaa caggatcgat
    17581 caaaatttta tattctttaa aacttataaa aagcgaagaa tgtccaagcc aagtaatatg
    17641 cggagtgcta aaaccactca aatcaggctt gaaaaaaggt aacttaaaag aagggatggc
    17701 attttttgga taaagataat aatacctcaa aatttcttta aaagacactt taggagttat
    17761 aagactgtgc tcattttcat taagaaaaat ttcatatttt ttaccctgca cttttttagc
    17821 ttttgatcgt tgtgtattgg aaatatcaaa ggttttaaat gataaattca aatttttcct
    17881 tttatgttta ttaag
//
LOCUS       DAPIWV010000022        17708 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.023, whole genome shotgun sequence.
ACCESSION   DAPIWV010000022 DAPIWV010000000
VERSION     DAPIWV010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17708
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.023"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1535)
                     /gene="recJ"
                     /locus_tag="RJ272_000528"
     CDS             complement(<1..1535)
                     /gene="recJ"
                     /locus_tag="RJ272_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDV7381645.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRG"
     gene            complement(1522..3153)
                     /locus_tag="RJ272_000529"
     CDS             complement(1522..3153)
                     /locus_tag="RJ272_000529"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HDV7381646.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            3273..3896
                     /locus_tag="RJ272_000530"
     CDS             3273..3896
                     /locus_tag="RJ272_000530"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HDV7381647.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            4016..5401
                     /locus_tag="RJ272_000531"
     CDS             4016..5401
                     /locus_tag="RJ272_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7381648.1"
                     /translation="MDKQFFQDFLMLSQAHTITTLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIYEG
                     NKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISTKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MFMMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAIIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(5440..7809)
                     /locus_tag="RJ272_000532"
     CDS             complement(5440..7809)
                     /locus_tag="RJ272_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDV7381649.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLCEYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSCQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(7825..9153)
                     /locus_tag="RJ272_000533"
     CDS             complement(7825..9153)
                     /locus_tag="RJ272_000533"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7381650.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLIDDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            9231..10133
                     /locus_tag="RJ272_000534"
     CDS             9231..10133
                     /locus_tag="RJ272_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7381651.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILIAKNKKAQIDLKSLFEKKLVQKEYLALAHGKIE
                     ENFIVDKAINLTKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKQQIESILDEKLNPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFDINSKINIKEIFNNSIK"
     gene            10245..11123
                     /locus_tag="RJ272_000535"
     CDS             10245..11123
                     /locus_tag="RJ272_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HDV7381652.1"
                     /translation="MKFVNFIQGQKHNLGVLNSSGKIVSFTDLGIETNDMNEFIIYFD
                     KFKHKLTDLDSKIAYEIPKENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            11187..12101
                     /locus_tag="RJ272_000536"
     CDS             11187..12101
                     /locus_tag="RJ272_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7381653.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISAQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            12091..13869
                     /locus_tag="RJ272_000537"
     CDS             12091..13869
                     /locus_tag="RJ272_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7381654.1"
                     /translation="MTNKKSSFLIKFIILSTLVLTFILVLLAIIFNNYSSSKDNKDLI
                     NIVQQLEISDEKINSVFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYNMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            13975..14142
                     /gene="dba"
                     /locus_tag="RJ272_000538"
     CDS             13975..14142
                     /gene="dba"
                     /locus_tag="RJ272_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HDV7381655.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            14154..15680
                     /gene="dsbI"
                     /locus_tag="RJ272_000539"
     CDS             14154..15680
                     /gene="dsbI"
                     /locus_tag="RJ272_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HDV7381656.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(15701..16375)
                     /gene="queC"
                     /locus_tag="RJ272_000540"
     CDS             complement(15701..16375)
                     /gene="queC"
                     /locus_tag="RJ272_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDV7381657.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            16451..17677
                     /locus_tag="RJ272_000541"
     CDS             16451..17677
                     /locus_tag="RJ272_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HDV7381658.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRGEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
BASE COUNT         6114 a         3067 c         2537 g         5990 t
ORIGIN      
        1 attcccctaa attcattctt agaaatactt ccaagcaaag aaatattttg attcaattct
       61 ggctctttat caaaattaaa aaataaagct tctatggttt tattttcctt agttaaaaca
      121 agctttaagt gtttttcatc tttacctaga agttttttat tttttacaca aagattttct
      181 aaaacaaaaa aaggtcgtgg atttttatgt ccaaaaggtt caaaagattc taaaatttca
      241 agcatttcaa aatcaatttc gctaggttct aagattccta aaatttcatc tgtatccaaa
      301 aattcacttt cagaaatttg cgaacattct tttttgattt tatttttaaa ttgttcaaaa
      361 ttttcagagt ttaaactgat tccagcagca cctttatgac caccataatt gcttaatata
      421 gaatttgtct tagaaattaa agctaaaata tcaatcttgc caacacttct tgcgctgcct
      481 tttaggtgtt cttcattttg agaaaataca aaagcaggtt tattaaaatg tttagctaaa
      541 cgacttgcca caatccctaa aacaccttca tgccaattta aacccgatac cacaatacaa
      601 gaatcgtttt catcgatttg atttaaacta tcttcaaaaa gctgtttttc ttcatcttta
      661 cgactttcat taaaactaac aatttgctct agatattcta aagctttatt aaaatcttta
      721 gtgtgtaaaa attcataaga aatacttgca tcatccattc ttccagcact atttataagc
      781 ggagcaatta aaaatcctat attatcaaga gcaaatttat ccttttgata ataatgctta
      841 atagccctaa aagcagccct tttagatttg ttaatatgat ctatgccacg ccttactaaa
      901 gcacgattta aatctctaag ttccatcata tctgcaacaa ttgcaatcgc caaaagttct
      961 aaaaatttac acatgtcata tttaagcttg cacacctctt ttaaagccgc tatcaaatac
     1021 catgcgactt gagctccaca aatttcaatt tctggaaaat cacaatcttt ttgctttgga
     1081 ttgataatgg caaaagcatc aggtaaaaca tcttgaggca tatgatgatc agtgataatc
     1141 aaatctatat ttttttcttt acagagtttg gctgcttcaa gagcagctat tccattatct
     1201 actgttatta ttaaatttac atcaagttcg ttgatgatct cagcatttaa tccatatcca
     1261 tctttaaaac gatttggaat tcttataata taatcaaaac ctatatcatc gaaaaattct
     1321 gccataataa cacaagaaat gattccatca acatcataat ctcctactat ggcgactttc
     1381 tcattttttt ctacagcttc tttgatgcga ttagctgctt tatatgcatc ctttaaacag
     1441 catggcaaag gcagatcaca aagtttggta tgcaaatctt tttcaaagcg tgaagccaaa
     1501 atttttttaa tttcattttt attaattatc ttcatagttt atagctgcct tgataaaact
     1561 gcaaatcaca ggattaacat gctcaagtct tgatgtaaat tctggatgaa actgcacagc
     1621 caagaaaaaa ggatgacagt taagctcaac tgcttcaatc aatcctttgc tttcaccact
     1681 tacaatcaaa ccgtgttttt caaaatctgc tctatatttt ggatttgctt catagcgatg
     1741 acgatggcgt tcttttacac tctttacttc attataaacc ttagccaaaa gggatttttc
     1801 cttgatatca catttataag cccctaaacg catagttcca cctaaaggag tttttgcagt
     1861 acgaatttgt ttttctccat ttgtatccat aaattcatca atcaaataaa ccacaggatt
     1921 ttggcatttt tcattaaatt cacttgaatt tgcatcttta agttttaata catttctagc
     1981 aaattccacc aaagcaagct gcatacctaa acaaattcct aaaaaaggaa ttttattttc
     2041 tcttgcgtat tgaatggctt ttatcttacc ttctacacca cgatatccaa atcccccagc
     2101 aaccaaaatt ccactcacat ctttaaatac ttcagaactt tccatatttt caagtttttc
     2161 actatctacc cattttaact ccactttagt atctagggct gcacctgcat gtataatagc
     2221 ttcagtaagg cttttatagc tttcttttaa atccacatat ttgcctacaa aagcgatttt
     2281 aacttcattg cttggagcta taactctttt taccaaagag tcccaatttt ccatattagg
     2341 ttttaaattt ttcaaatcca aaatttcagc aataggactt aaaatatctt gctttaaaaa
     2401 attaagtgga atttgataaa tactagccgc atcaacactt tctatcacgc aatttttttc
     2461 caccccacaa gaaatagcaa ttttatcttt taaatctcta tcaagagctt tttcactacg
     2521 acaaataatc atatcaggac taatacctat gcgtcttaac tcgcctacac tatgttgagt
     2581 tggctttgtt tttaattccc ctgcagcctt aataaaaggt actagagtaa gatgaatatt
     2641 catagcatta tttttaccca cttccaaacg caaagcacga atagcttcta aaaaaggcaa
     2701 gccttctata tccccaacag ttccgcctat ttcaacgata agtatatctt tgccttctcc
     2761 tgctttttta atgcgatctt tgatttctcc tactatatga gggataactt gaatggtttt
     2821 gccaagatat tctccacgcc tttctttttc aatcacactt tgataaaccc gtcctgtagt
     2881 gaagttatta tcttgagata aactctcatc caaaaaacgc tcataatgcc ccaaatcaag
     2941 atccgtttct gctccatcat cagttacaaa aacctctcca tgctcaaaag gactcatagt
     3001 gcctggatca acattgatat aaggatcagc ttttaaaata ctcactttaa gccctgaatt
     3061 ttttaaaagt gttgcgatag aagcagcggc tatcccttta cccaaagaac ttaaaactcc
     3121 acctgttaca aaaatatatt ttgtttgttt cattgataat aagccttatt tttttatcta
     3181 attatagctt gataaaactt tttatttcat tagaatttta agtaaaaaat gcaagaatta
     3241 caaaaaatat ttttatcaaa aaaggaataa gcatgcaaat cactttactt tttcacactc
     3301 cattatctgt ttgttctcat gcaacaagaa cttgttggca aagctttgaa aaaggcgatt
     3361 gcggtggcga aaaagataaa gaacttatcg atcgcgtagg caacaaattc aaacacgctt
     3421 caaccttaga acatctaaac tatacttttt atatacaagg aatttcaaga gcttgcttac
     3481 aagaagttgc aagacaccgt cacactagtc ctagtgtaaa aagcacgcgt tataccttaa
     3541 aagaacttcg caatgaagct gaatttaaaa taggagattt tgaaaatgca agccgttatc
     3601 ttgtgctttg tggcaatgaa gaggttgata acgcaagcat taaagcctta gaaaatttac
     3661 gcactatttt acaaaaaagc attagtctag atatagccaa atactgctta ccagaaagct
     3721 ataaaactga acttacacta acgattaatg caagaagttt gcagaatttc atttctttgc
     3781 gtagttcaaa atcagctctt tgggagatta gaaatttagc aaatgcttta tttgaagcct
     3841 tgccacaaga acacaaattt atatttgaac attgcttaca taaagatata gaataaatca
     3901 tactaatttt atcttattta aaatattgtt atgctaccat ttataaaatc aagctttacg
     3961 caagtatatt ttcatatacc ttgtgcttga ttatagtttc ttataaggac tttttatgga
     4021 taaacaattt tttcaagatt ttctaatgct ttcacaagct catactataa ctactcttgc
     4081 tatgctttgt gttgtttttt acgcattaaa aaaaatgcgg gatataaaaa tcaatttttc
     4141 tcttcgcatg ctatttgcgc ttttaatggg tttggggttt ggttttgctt tgcaatattt
     4201 ggcaaatttt ccagatgcta aagaagcaag taatattctt tggtatagcg aaacaaaaca
     4261 ttggtttgca tttgtaagtt ctgtttttgt agcttttata aaaatgctgg ttgttcctct
     4321 tgtaagcatt tgcattataa aagtaattat agaaattgat aaaaatatca aaatatcctc
     4381 cttgcttgga ataagtcttt tttggatact ctttagcaca gccatagctg caaccttggg
     4441 tatattttta ggttatagtt ttgatttagg aagtaatttt gctatatatg aaggaaataa
     4501 acaaattcgc gaaattcaaa ctttttcaaa tattatacta gggctaatac ctagcaacat
     4561 cattgcagct attaataaag aaaatattat agctattgtc attttttctt tttttatagg
     4621 aattagtgct aaaaaaattt ctacaaaaga agagtatgaa caagccttta aaagttttca
     4681 taattttatc ctaacctttt ataatattat gatgaacatg actgctacag ttattagatt
     4741 tatgccttat gctgtagttt gtatgatggc taatgtgctt ttaagcaatg gttttgaagc
     4801 tatcaaaaca gctggacttt ttataatgct tatttatata gctatgttta tgatgttcgg
     4861 ggtgcatttt ttacttcttg cttcacaagg gctaaaccct ataaaatatg caaaaaaagc
     4921 atttcctgta tggttatttg catttagctc aagatcttct ttgggcactt tgcctatgac
     4981 cacttcaact ttgcaaaata aatttggagt taattcagct atagctaatt ttgtagcatc
     5041 tataggtaca acaacaggac ttaatggttg tgcgggatat tttccagctt tagcggcagt
     5101 ttttgtagct tttgctacac atacacatat tgattttaca tttgctttaa tgatagtttt
     5161 ggtagctatt attggatcct tgggtatagc tggagtacct ggaagtgcaa ctatggcagc
     5221 ttctattatg ctagcaggga ttggatttgg taataatttt gtcatgctaa gtttgatttt
     5281 agccatagat cctattatag atatggcaag aacagcaagc aatgtctcag gagctatgac
     5341 ttcggcactt tgtactgcaa aaaatctaaa agctctagat aaagaaattt acaattctta
     5401 atcttttaaa acccaatgct tttcattggg ttttagtatt tattggcaac cttcacattc
     5461 tatgctacga tctgcaacat tgactttttc actatcaggg ctttcacttc ttaaataata
     5521 agtagatttt actccaagct cccaagcgag ttgataaatt tcatttaaat atcccccact
     5581 tgctttatca agtgataaaa agatatttaa actctgccct tgatcgatcc atttaccacg
     5641 cacagcagca gcctttacaa gaattttttg atcaagttcg taggctggag tatagtattg
     5701 ccaagtatca aggcttaaat ttggcacaac aacaggtatc ataccactta aattttgttc
     5761 aaaccacttt cttttgtaaa caggttctat agtctgcgta gtacccacca agatagaaat
     5821 agaagaagta ggtgcaatgg ccatcaaata accatttctc ataccatctt ttttaacttt
     5881 ttctctaagt ttaacccagt cgcattcact ttgatcaaat aagccctctc ttaaagttaa
     5941 agctttagcc ttaggacttg ctacatcaat aggaaaaatc cccttgctcc aatttgatcc
     6001 ttcaaaatct tcataagaac ctttttcaag agctaaattt gaactcgcat taatagcctc
     6061 aaagctaatt tgctccataa tctcatcgat tttatttaaa tgctcatcgc ttccccaatg
     6121 aatcttagcc tcagcaagca tttgtgcctc gcccataact ccaagaccta tggcacgaga
     6181 ttttaaattt gtatctttta cttttctatg aggataaaaa tttaaatcaa ttacattatc
     6241 aagcatacga atagctgttg gaacaacacg ctctatatct tctttagtat atactttgct
     6301 aagatttata cttgctagat tacaaacggc tgtttttcca tcatttttat atttttcgac
     6361 tatataaact ttattaccat caatgctatc taaagttgat atttttttgg ctggtttttc
     6421 atatccccca tcgatcacaa ccttttgctc ttcatcaaaa tgaagctcat ctccattttc
     6481 aaaaactact ttgatttgat aataatttgg ctcggtattt tgaaaaattt cagtacataa
     6541 atttgaactt ctaataattc ctacatgagc atttggattt gctctgttag cactatcctt
     6601 aaaacataaa aatggcaagc ctgtttcaaa ataatttagc aaaattttct tccaaagctc
     6661 tttagcttct acgatttctt tggtaatgct ttcatctttt tcatattctt catagcgttt
     6721 ttcaaaagct tcaccatata aatcacacaa atccgccgta tccgcaggat caaaaagagt
     6781 ccatttatca ttagctctta ctctcttcat aaaaagatca ttgatccata aagcagggaa
     6841 aagttcatga gcacggcgtc tttcttcacc tgaattttta cgcaaatcaa taaaatcact
     6901 tatatccatg tgccaaggtt ctatataaac agctatagct ccttttctgg ttcctagctg
     6961 atctactgcc acggcaatat cattagtaat tttcaagaaa ggtataatcc ctcctgcggc
     7021 atttttatgc ccatctatgc ttccacccat agcacgcact ttagaccaat cccaacctat
     7081 accgccacca aatttagaaa gcaaagccat ttcttggcaa gaatcaaaaa taccttcaat
     7141 attatcaggg gttgatccta tataacaaga actaagctga tggcgcgttg ttcttgcatt
     7201 agataaagtc ggagttgcaa gcatgagttc aaatttagaa attaaatcat aaaatttctt
     7261 cgcccattct tgaggattaa attcattctg cgctaaaaac atcgcaatgg ccataaacat
     7321 ttgttgagga agttctatag gcataccttt actatcttta atcaagtatc tatcatataa
     7381 agttttaata ccaagataag taaattgcat atcgcgttca ggtttaatat aagcatttaa
     7441 atcatctaaa tcatattttt ctttaagacc aagtaaaatt cttccttctt tttcaccttt
     7501 ttcaaaatac tcacacaaat gattatagcg attcatacca ttaacttttt tatataaatc
     7561 aaataaaaaa agtctagctg caacaaaggt ccaatttgga caatcaatat ctatcttatc
     7621 tactgcagtt ttaattaaag ttttttgaat ttcttcagtt gaaattccat cgcgaaattg
     7681 aatctttgca tcgagttcaa gttcgcttaa attcacaccc tctaaatctt ttacagcatc
     7741 agaggtgcat tttttgatct tggaaacatc caattcttct gtacgaccat ttcttttaat
     7801 aactttcatt gccttccttg ctttttattt aaatgttctt ttaaaaattg catcaacatt
     7861 ttttgtatag tagttataat cgaaacattt tcttacatcc tcttcgctca aactttttct
     7921 taaatcttca tcgcttaaaa gcgctaacaa aaacaaactt tcattttttt cattgatagc
     7981 agccttgcca ttttgcaaat ctgcccaaac tttcatagcg tttctttgaa ctattttata
     8041 agcttcttca cggctaatgc ctttaaatgg aagttctaaa agcaccctcc ctgaaaatac
     8101 aagcccgcct gtaagattta aatttttcat catattttca ggataaacca aaagcttatc
     8161 aatcaaattt gtaagacgca taagcataaa atcagccgtg ataaaagcat caggcaaaat
     8221 aaatctttca acactagaat gagatatatc tctttcatgc caaagtgcaa cattttccaa
     8281 agctggagtt acaaaagatc taagcacacg acaaagtcct gtgatatttt cacttaaaac
     8341 aggatttctt ttatgtggca tagctgaact tcctttttgt cctacactaa aatactcctc
     8401 agcctcataa acttcagttc tttgaaaatg tcttatggct acagcgattt gctcacaact
     8461 tgaagctaaa atcgcaatag cagaaataac ctgagcataa cgatctcttt ggatcacttg
     8521 atttgaaaca ggagcggcct taagacctaa atttttacaa acttcttctt caaattctaa
     8581 aggagcatga gcaaaatttc ccattgcacc gctgattttt ccatagctta tcacttcttt
     8641 tgcatgttct aaaagctctt ttgcatgcga aatttcatca taccaaatag ctaacactaa
     8701 accaaaagtg ataggttctc catgaattcc atgacttctt cctaccatta aggtgttttt
     8761 atgctccaaa gcacgctttt tgatcgcttc taaaagcaaa gaaacatctt ctaaaataag
     8821 ctccaaactc tcttttatct gtaaagcaac agctgtatct atacaatcag aacttgtcat
     8881 tgcataatgc acaaaacgac tctcttctcc caaactttca cttacacttg taagaaaagc
     8941 tataacatca tgttttgtgg ttttttctat ttcgtctatt cttgcaatat caaattttgc
     9001 atttttaaga attttttcgc agtctgtgtc atcaatgaga ccgagtttat tccaagcttt
     9061 tacagcggct aattctactt ttaaccacgc atcgtatttt gcttgcatgt cccatttttt
     9121 agccatgatt tctctgctat atctttcaac catctttgaa acctttttag ctataatttt
     9181 atattttaaa aaacagaaat tatatcaaat tatcctaaga aagttattaa atggcctaca
     9241 taaaaataaa actctcaaac aatggaaaaa aggcgtttca agtccttatg gaaaatttaa
     9301 aaattagcat aaatgaagca caaaaactca tagacaaaaa aagacttttt tgtgatggaa
     9361 ttttagtaga agaaaagaat aaaattttaa atggtttagt agagcttata gtctatgaaa
     9421 acaatcccaa aggagtagaa attgtctttg aaaatgaaga ctttgccata cttgaaaaag
     9481 aaagtgggat cttaagccat ccaaatggta gacattgcaa atacagtctt agtgatgaaa
     9541 tttggcatct ttggggaaaa gaagcttgcg tagcacacag gctcgataaa gaaacgagcg
     9601 gacttatact tatagccaaa aataaaaaag ctcaaattga tcttaaaagc ttgtttgaaa
     9661 aaaaactagt tcaaaaagaa taccttgctc tagctcatgg aaaaatagaa gaaaatttta
     9721 tagttgataa agctataaat ttaactaaaa actacgatga tgtaaaaaca agaatgcaaa
     9781 tttgcaaaga aggaaaacaa gctatcactg aatttgaaat tttagaatac tttcctaaaa
     9841 tcaacgctac tcttttactt tgtaaaccct taacaggcag acaacatcaa ataagagtgc
     9901 atttacacta taaaaatcat accattttag gcgatccact ttatgggctt agcaaacaac
     9961 aaatcgaaag tattttagat gaaaaattaa atcctaaaga acgcttaaaa cttacaggtg
    10021 ccttgcgttt gtgtttgcat tcttatcgtt tgaaatttca atataaaaat caaaattttg
    10081 atatcaactc aaaaataaac ataaaagaaa ttttcaacaa ttccataaaa taaaatgatg
    10141 tttcactacg ctacaatcaa tcactttttt accaaatttt aaaacaaaaa aataattctt
    10201 gctaaaactt taagtataat taaataaaaa agcgagattt tccaatgaaa tttgttaatt
    10261 ttatacaggg tcaaaaacac aatctaggag tactaaattc tagtggaaaa attgtaagtt
    10321 ttactgatct tggcattgaa actaacgata tgaatgaatt tattatctat tttgataaat
    10381 ttaaacacaa gcttacagac ttggattcta aaatagccta tgaaattcca aaagaaaatt
    10441 atctagcccc tattatagaa cctcgccaag atattatatg tcttgggatt aattttttag
    10501 atcatgccaa agaatctgcc aaatttaagg gtgaaaaatt tgaagaaaga gaatatcctg
    10561 tatattttgg aaaacgctgc aatcaagcta cgccaccttt tggcgatata cctttacatg
    10621 cagatgtaac ttctcagctt gattatgaat gtgagcttgc atttatttta agtaaagatg
    10681 cttataaaat caaagctaaa gatgcaaaag attatatctt tggctatact attatcaatg
    10741 aaatttcagc tcgcgaactt caaaaacgcc acaaacaatt ctaccgagca aaaagtcttg
    10801 aaggtagcac tataatggga ccttatatca caagcgtaga tgaaatttct tatcctccta
    10861 aactccaact tcaaagctat gtcaatgatg aactacgcca aaactctaac actcaattgt
    10921 ttatttttga tattgcttat gtcttagaag aacttagtgc aggcatgctt ttaaaagctg
    10981 gaagtattat atctatggga actcctagtg gagtaggtat ggggttaaat ccacctactt
    11041 ttttaaaatc aggagataaa gtacgttgcg ttatagaaaa tttaggagaa ctttgtaata
    11101 aaataaaaaa tatcaattat taaataattt actaaaatta tactataatg gcattttaaa
    11161 aacttaaatt aaggcaaaaa tttatcatga aaaaaataat aatgatttta tgtttatctt
    11221 atgcaaatat agtctttgca gtagatatga taacccctat tccaaattcc atctcttatg
    11281 ataaagaaaa agctaaactt ggaaaaagtc tttatatgga taaaagttta tccaaagatg
    11341 gaaaagtttc gtgcaatact tgccataggc ttgatcaaca cggcgttgat ggacttgaat
    11401 tttcaatagg agttgataat caactcgata aaccctttaa cactcctaca acctttaatt
    11461 ctgtatttaa ttttgtgcaa ttttggaatg gtagagctaa agatttagca gaacaagcta
    11521 tgggaccttt tttcaatcct aaagaaatgg ggctaagtcc tgaacttctt ttacaaaaag
    11581 ttaattcaaa tgaaaattat gtaaaaactt ttaaaaaact ttatggagaa gttacggtag
    11641 aaaacatagc tcttgcaatc gccgaatttg aaaaaacctt gatcactcca aattctcctt
    11701 ttgatcgcta tcttagcggg gatcaaaatg ctatttcagc tcaagctaaa aaaggttacg
    11761 aagattttaa agctaatggc tgcatctctt gtcatcaagg tcaaaatata ggtgggaata
    11821 tgtttcaaaa aatcggtatt tttgaagaat acccaaacca agaagattta gggcgctatg
    11881 aaatcacaaa aagagaagct gataaaatgg tatttaaagt tcctagtctt agaaatatag
    11941 ccaaaaccgc accttatttt catgatggat ctatacctac tttagatgct tgtgttcagt
    12001 ttatggctta ctatcaacta ggaaaatttt tagatcaaga aacagttgac aatatagttg
    12061 cattcttaga aagcttaaca ggagaatatc atgacaaata aaaaaagttc atttttgata
    12121 aaatttatta tcttatctac actagttttg actttcattc ttgttttatt agctattatt
    12181 tttaataact attcttcatc taaagacaat aaagacttga taaacatagt tcaacaacta
    12241 gaaatttcag atgaaaaaat caattctgtt tttcaaaata gttttaattt tatcaactac
    12301 gatccaagtg ttcaagcaat aaaaaaaatg caagaaaact ttacaaaact taaaactttt
    12361 gggattgaca taaacaaagc agaagaaatt tttaatgcca aactaatcca gcttaattat
    12421 tttaaatccg caaattccat agcagtaaat tcaaaacttt atttatttga actagctaaa
    12481 aattattttg aagaattgga acaaaaccat gaaacaaata aaaacaacta taaaacaatg
    12541 agttctatgt taagcgttct ttcaactgaa aatattttac aaaaaacaac actaaatcaa
    12601 ctcaacaatc ttatgaaaga aatcaaaaat gatacaaaaa gtgaaaattt acaacttttt
    12661 ttaaaacact ataacatgat tgtaaagcaa atttctatta tgcaagataa ttcttctatt
    12721 tatgagaata attctctcat gaaagagtta aaacaactta acacttttac ccaaaatact
    12781 atagaacaat ctaatttatt taaattttat atcgctttag cagtatttgg aattactctt
    12841 gtattatttg tattttttat tttattaaca ctaaaaaaag tcatcatgcc aattcatact
    12901 ttagaaaaac taagcgctaa tttagctagc aaagaagcca atctacactc tcgtttaaat
    12961 atagatccaa aaagtgagct tggacaaagt gctcaatata ttaattcatt tatttccacc
    13021 gttcaaaact caatcataga agccatagaa aatgctaaat caagtcatca aaattcacaa
    13081 aaactcaaaa acaactctat gatgcttgaa aacagctcta attcgcaaca tgaacaaatt
    13141 caaggagtta aagaaatcac tcatgtttta gatgatcata tcaatcttgc gggaaattta
    13201 gcacaagaaa gtatagaaaa tatgcaagat atgcacatac taatggataa agtagaactt
    13261 actctatctg aacttgtaaa tttaataaat gaaaacaatg aaaaagaaca aaatatagta
    13321 gccaatatgg acaatctaac ccaaagtgcg gataatatta tagaaatcac aaactccatt
    13381 aaagacatag ctgatcaaac taatttactt gccctaaatg cagctattga agctgcaaga
    13441 gcaggcgaac atgggcgtgg atttgctgtt gtagccgatg aagttggaca gcttgctgat
    13501 aaaacaagta aatctctttt aaacatcaat gctactgtta atactatagt ccaacaaatc
    13561 aatgacaaca aagccttaat ggatcttatc catgattcta tgaaagaaac ctcttcaaaa
    13621 accaatgatt tacaacaaga acttgtaaat tctatgcata aattggaaag ctctatagaa
    13681 tcaacccaaa ccatgaaaga taaaagcatg gaagtaaaag ataaaatgct tatcttagga
    13741 acaaatatag ataaagttaa cgaacttgca aattctgtta aagatttatc atgtgaaatc
    13801 aataatatct ctcaaaatgt tctaaatggt gcctctaaac tctccgaaaa attaagtagc
    13861 tttcagtaac ttttttcacg ttaatttaac ttaacgtgaa atttcaataa aaattttatt
    13921 tttaatttat gtttttcaag taaaattagc agtttttatt tcaaaggaga tactatggag
    13981 tttcttgaac ttttattagt tttaatcgcc ttgatactga ttatcaaaaa accagaaaaa
    14041 gaaaatttgg cttttggttt ggtaatggta gcttggcttt taatggtttt tttctatgtt
    14101 ggccacaaaa caggcgcact attaacaata atgaatctgt aaggaagggc taaatgaacg
    14161 aaatcaataa aacaaaaaat ttctacacac taatgtgttt agcaggcttt ttgattatac
    14221 tcttgcctgt aggtattgca aatttgatat ttggttatat gttgggcgat agtccttgca
    14281 cgctttgctg gggacaaaga gaagcaatga tctttatcgg tgtaatggcg cttttcattg
    14341 ttcgttatgg tatgaaaggt aaataccttg ctgctctttt aatcatgaca gcagtagggc
    14401 tttatcaatc ttttgctcac tatggtaatc acgctcatag agatttagat caaggttttg
    14461 gtttagcagt ttttggtatc catacttatt tttgggctga agtagtattt tgggctgttg
    14521 tattgctctt aggtgtgatt tttgcttttg ctcctaaatt taatgctttt gaagctgaac
    14581 taaatggaga aaagtttaga aaatatacta aatttagctt tgcagcagtt ttaatcagtg
    14641 ctatcatcgt agcatcaaat gttttccaag cctttgttag cacaggtatt cctccttatg
    14701 taggacaagg cgatcctgta agatttagtt taaatccaaa atacatcatt tggagtaaag
    14761 aaggttggaa tggtttatgg caaaatattt ctttcttagg aaaacgcgat gttaaagctc
    14821 ctgattatgc ttttgcacct gcaagtgaaa aacttggcat aaaatttgat aatgatatca
    14881 acaatgctcc atttgcaaaa atcaatgatg agcttaaaat cacaaatgaa caaaccataa
    14941 attttgacaa agctatcaat actcttgatt atatcaataa cgaatttgta gcaagttcta
    15001 aatgggatgt agctttctta gataataatt ttagcgttaa agaaggtttt gaacttgatc
    15061 cttatttttc agcttctatc gatccaatca tcggtatcat accttatatg aacgataaat
    15121 tcattcttat gggctcaaac aaatctttct taagatttgc aaaaaatcct aatgcaagtg
    15181 aagaagatat cgctaaacaa tacgctgact ttgtaaaagg caatgataaa tttaaaggtc
    15241 aaggcgaaag tttaggtcgc ggaagacttg ataccgtaag agcaaaattt aaccatgtag
    15301 caagtatgac tacagatgga aattatcttt atcttgcaac tgttccaaac aacaaagacg
    15361 ctaaaacttt tgtaatctct aaagtttctt taaaagatcg tgttctttca ggagaattta
    15421 ctccaaaagc aaatcttaaa gaaggtaaaa ctttaggcga tctttatgta acttctatga
    15481 cttttaaaga tggggaaatt tatgcactta gcaaaaatca caatgtgatt gccgtaattg
    15541 atccagtcaa agaagaagta gtgaaaacta tcgctttccc aagctctatc actaatgcta
    15601 gaagcatttt ctttaaagat ggaaaaatca atattctttc ttatcaagat ggagcaaaca
    15661 agctttatac tttaaactaa gctttaagtc ctagtgaaaa ctaggactta tatttaatct
    15721 tatctttaaa tcctgctttt tcaaaacctc ttaaacgaag caaacaacta tcgcactccc
    15781 cacaagcttc atcttcactc tcataacaag accaagtaag ttctaaaggt acattttctt
    15841 ttaaggctag ttctacaatt ttagctttgt ttagtctaac aagcggagtt tttatacaaa
    15901 ctttgaaatt cttactcgta ccttcattga taaattcttg tgccttttgt ataaactcat
    15961 cagtacagtc aggataacca ctgccatctt cttctaccac ccctataaaa atactctcac
    16021 aattttcctt ttcagccaaa gatcctgcta tacttaagaa aattccattg cgaaaaggca
    16081 cataagtgat aggtggagta tcgcttgtac aaagctcatt tttagggatg tctatacttt
    16141 tatcggttaa ggcattgccc cctatatctt tgataaaact cacatctaaa atataagatt
    16201 tttctacttt taaagccttg caaatttgct taaaacattc tttttctttt tcttgagtgc
    16261 gttgttcata gtcaaaatgc aaagcgatga tttcataacc ttcttttttg gccagataag
    16321 cacacaaagt actatccata ccgccactta tgatacaaag tgctttttta ctcattttta
    16381 tccttaaatt tgctataatt tcacaatttt aacgaaaatt tttaaattta aattgcaaaa
    16441 aggcaaaagc atgataaaca taaaactcat agaacacatt tttaaagccg cttctatcag
    16501 tcgttggaat gattatccaa gaatggcaaa tttggttgaa cttgacaaac aagctcataa
    16561 attcatcatc gcatatttta tcgctaaaat ggaaaaagat gtggatatga gagtgattat
    16621 agaaggggga atttttgagt ttttaagtcg tgttgtggta actgatatac gccctgatgt
    16681 gtatcatgaa atcgtgcgtc aaaaaaaagc tgaagttaat gcttgggttt taagcaaaat
    16741 cgaacctatg atagaagata tagaagatgg ggaatttcta aagcgttttg aagcgtattt
    16801 aaatggtaat gcttatgcta aagaaagact tatcttaaaa gcagcttcat attttgctac
    16861 aagatgggaa tttaacatag tttatcaaac ctcagctttt ttaaatgata ttgatgagat
    16921 taaaaacaaa gttgaagaag aattagaaga ttactatgag cttataggag ctagaaaaat
    16981 cgctttaaat caaaaaatag ccaaaattat tgatcttagc ggaagacttc gctttcaaaa
    17041 acgttgggct caaactccac gcataccaga aaccgcggtt ttaggacata tgcttgtggt
    17101 ggcgatttta ggatattttt actcactaaa aatcaaggct tgcgataaaa gacttgagaa
    17161 taatttttat tgtgctttgt ttcatgattt gccagagtct ttaacacgtg atattatcag
    17221 ccctgtaaaa tacggcattg atggacttca tgatatcata aatgattatg aaatgaaact
    17281 tattaatgaa agaattttac cctttgtacc tgagggttta aggggtgagt tttcttatat
    17341 tttaggcatt agagaaggta gaaacggtga gtcaaatttt gtaaaaaatg agtttgaaaa
    17401 tcgcacttat aaaaatgcta aaatcgagct ttgcagcgga agtttaagct cttttaatga
    17461 aaatgaattt ggtgctatag atggtaaggc gcttaaatac tgcgataaaa ttgctgctta
    17521 tatagaagca ggacttagta taagttatgg tgtaaagtct aaagaacttg aaagtggttt
    17581 tttaggaatg catgagtttt ttaaagaaaa tcctaccata gatggggtga atttttttga
    17641 aatttgtgaa agtttaagag agtattttaa aatttaaata agatttttat actactattt
    17701 tcaatatg
//
LOCUS       DAPIWV010000023        17355 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.024, whole genome shotgun sequence.
ACCESSION   DAPIWV010000023 DAPIWV010000000
VERSION     DAPIWV010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17355
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.024"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            100..1164
                     /gene="mqnE"
                     /locus_tag="RJ272_000542"
     CDS             100..1164
                     /gene="mqnE"
                     /locus_tag="RJ272_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HDV7381659.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1174..2493
                     /locus_tag="RJ272_000543"
     CDS             1174..2493
                     /locus_tag="RJ272_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDV7381660.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMS
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAAASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2507..2950
                     /locus_tag="RJ272_000544"
     CDS             2507..2950
                     /locus_tag="RJ272_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HDV7381661.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            2995..3693
                     /locus_tag="RJ272_000545"
     CDS             2995..3693
                     /locus_tag="RJ272_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDV7381662.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLVPLRFVGNILQFKFEE
                     AGEEFKRFTTNTIMGFGGLMDMASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            3703..4272
                     /locus_tag="RJ272_000546"
     CDS             3703..4272
                     /locus_tag="RJ272_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDV7381663.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4272..6743
                     /locus_tag="RJ272_000547"
     CDS             4272..6743
                     /locus_tag="RJ272_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HDV7381664.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMITYIKSDLVLYGVSLVFLLGFALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYIALVLIITLSVVVHLITHFIENTQNHPK
                     ATVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSILSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(6774..7376)
                     /gene="rdgB"
                     /locus_tag="RJ272_000548"
     CDS             complement(6774..7376)
                     /gene="rdgB"
                     /locus_tag="RJ272_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDV7381665.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            7543..8838
                     /locus_tag="RJ272_000549"
     CDS             7543..8838
                     /locus_tag="RJ272_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7381666.1"
                     /translation="MLNYVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            8835..9644
                     /locus_tag="RJ272_000550"
     CDS             8835..9644
                     /locus_tag="RJ272_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7381667.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENVKFNYNG
                     TIYKIFIAKNKNENSNYKYKIIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLA
                     FDTQKRTKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGG
                     LFAIDTLLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSII
                     KGVAKLNAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
     gene            complement(9637..11298)
                     /locus_tag="RJ272_000551"
     CDS             complement(9637..11298)
                     /locus_tag="RJ272_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7381668.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLILADSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAENLSVVRK
                     DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIMLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFSCIECGKE
                     FATKKAVEKIANLMKPKFGNDEDKIKTLYCCADCKAKVMIKAMIN"
     gene            11376..12698
                     /locus_tag="RJ272_000552"
     CDS             11376..12698
                     /locus_tag="RJ272_000552"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDV7381669.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELIEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEANIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            12695..14500
                     /gene="selB"
                     /locus_tag="RJ272_000553"
     CDS             12695..14500
                     /gene="selB"
                     /locus_tag="RJ272_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDV7381670.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFIVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENYEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQLYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            14549..15259
                     /locus_tag="RJ272_000554"
     CDS             14549..15259
                     /locus_tag="RJ272_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDV7381671.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            15265..15795
                     /locus_tag="RJ272_000555"
     CDS             15265..15795
                     /locus_tag="RJ272_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381672.1"
                     /translation="MSKITLILSFFITLFMSACTNTTFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLKNKIINQIVSFFYF"
     gene            complement(15841..16332)
                     /gene="fldA"
                     /locus_tag="RJ272_000556"
     CDS             complement(15841..16332)
                     /gene="fldA"
                     /locus_tag="RJ272_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDV7381673.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(16332..17027)
                     /locus_tag="RJ272_000557"
     CDS             complement(16332..17027)
                     /locus_tag="RJ272_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381674.1"
                     /translation="MLFGFDDKREFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DFLRLLRIYLYGICFDVQILFSSYVYDKISFQNNEKNIDQDGDLIIIDKKFAILPLCK
                     EINTYNLKIENEIHELLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            complement(17030..17344)
                     /locus_tag="RJ272_000558"
     CDS             complement(17030..17344)
                     /locus_tag="RJ272_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HDV7381675.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
BASE COUNT         6218 a         2609 c         2521 g         6007 t
ORIGIN      
        1 aacaaaaata tcttttattt tggctttttc tataaactct ttttcagtaa gcaaaaatta
       61 taatgcttta tttaaaaaca gcaaaagagt aaaattaaaa tgaaaaattt aatcaccaaa
      121 ctagaaaatg aagaaagatt aaaccaagaa gaagccaatg cactttggga tctagatctt
      181 tttaccttag gcaaatacgc tcacaaaaaa cgcactaaac ttcatggaaa aaaagtctat
      241 tttaatatca atcgccatat caacccaact aatatctgtg cagacacctg taaattttgc
      301 gccttttcag cgcaccgaaa aaatcctaat ccttatttga tgactcatga agaaatcatg
      361 aaaatcgtcg atgaaactgt aaaacgagaa accaaagaag tgcatatcgt ttcagctcac
      421 aacaaagata caacttggca atggtattta gaaattttta aaatgataaa agaaaaatat
      481 cctaatcttc atgtaaaagc tatgactgct gctgaaattg attttttaca tcgtcgtttt
      541 aaaatgagtt atgaagaagt gatagaaaaa atgcttgaat acggcgttga ttccatgcca
      601 ggcggtggag ctgaaatttt tgatgaagaa gtgcgtaaga aaatttgtca tggaaaagtt
      661 agcagtgaaa attggcttaa aattcataaa ctttggcatg aaaaaagcaa gcaaagtaat
      721 gctaccatgc tttttggaca tatagaagaa agacatcaca ggatcgatca tatgttaaga
      781 ctgcgtgatc ttcaagatca aaccggtgga ttcaatgctt ttatccctct agtttggcaa
      841 agggataata gctttataca aactgataaa atcatggata gtgaagaaat tttaaaaacc
      901 attgccattt ctcgtttagt gcttgataat atcaaaaata tcaaagctta ctgggcaaca
      961 atgactttaa atttagccat ggtagcacaa gaatttggag ctaatgattt agacggcact
     1021 atagaaaaag aaagtataca aagtgcaggt ggtgcaaagt ccgccaaagg cacaagttta
     1081 aaaactttta tcgatatgat aaaaacttca aatcttattc ctgtagaacg cgatagttta
     1141 tacaatgagc taaaaaccta ctaaggagaa aaaatgagct tttttaaact caaagaaaac
     1201 aatacgagtt ttaaaaccga agttatagca ggacttacta cttttttagc tatggtttac
     1261 attatccccg taaattctag catagtagga aatacaggaa tgtctataga agctttaatc
     1321 accgcaacag ctttaattac aatagttgca agtgctttta atgctttttt tgccaatact
     1381 cctgtagcta tgagtgtagg aatgggttta aatgcttatt ttacctttgc ggtttgttta
     1441 ggtcaaaaca tagcttggca aagtgcctta ggagctgttt ttatttcaag tattattttt
     1501 ctcatacttt cttttacgca ttttcgcctt tgggtaatcc gcaatatccc aaaagattta
     1561 cgccttgcaa tttgtgcggg cataggttgt tttattgcat ttttaggctt aagtcaaatg
     1621 ggtgtgataa tgcataataa agatacctta gtcagcatag gaaatttcaa aagccctcat
     1681 gtgctttttg gaatttttac tctagcttta atcatctttt tttgggctat aaaacttcgc
     1741 ggagctttta ttttgggggt attagcaagc tctattattg cttggatttt ccatttagac
     1801 aatgcaagtt ttcctgtgca aatcttttct tggccaaatt ttagcatgga aaatggttta
     1861 ggagccatct ttttacaact tgatatcaaa agcgccttaa atattactat gatacctata
     1921 attcttactt tttttatcac tcaacttttt gatagcatag gaactatcac aggtgtgggt
     1981 gaaagaggaa agatttttga tgatcccaaa aatggagaaa aaaaactaag caaaacctta
     2041 atggcagatg caacaggatc agccttagga gctatgacag gcacttctac agttacagcc
     2101 tttgttgaaa gcactacagg ggttgaaagc ggaggaagaa ctgggcttac agctttagtt
     2161 gtagctattt gttttgcttt tacacttttt ttactgccac tttttaaagc cattcctgca
     2221 aacgcaatat accccgtact tgtaatggtt ggaattttaa tgtttatgga agttaaaaat
     2281 atagatttta aagatagtgc tatagctgca gcaagctttt ttactatcat catgatgcct
     2341 tttacttact ccatcaccac aggttttgct tttggttttc tttcttattt acttgtaaga
     2401 atttttaaac gcgaatggga taaaatcaat cttggcatta tagttttaag tttattatct
     2461 ttgggtaatt ttttacttat ggcactacaa taaataagga tatataatga tattttactc
     2521 ctatgaagaa tttaaagaag atgtaaaaat tcttgctaaa gaaattaaag aagattttaa
     2581 ccctgatgca cttttagcta tagcgagagg ggggatgagt ttaggacact ctttagcagt
     2641 ggctttaaaa acgcgtcaac tttttgcttt aaactcaatt cattacgata atacgaaaaa
     2701 acttgatact attgaaattt ttaacattcc cgatttaagc aagcacaaaa aaattctact
     2761 cattgatgat atagtagata gtggagaaag tttagcagaa ataaaaaaag ttttgcttga
     2821 aaaatttcct catatagaac ttaaaattac aaccattttt tacaaaaaaa ccgctctttt
     2881 agagcctgat tttaaagtaa aagaagctac tgaatgggtg gatttttact gggatataaa
     2941 tcttgattaa aaatttgcta taattttact tttaaaattt ttaggagttt ttgcttgaga
     3001 ataaaattta tatcttttat tttaattttt tttgctattt ttgcttttgc taaagaacaa
     3061 aatttagatg atttcgaaca agaataccaa aactatcaag taaacgatcc actttcagga
     3121 tataacaaag ctatgacaag ttttaatgtg gctttgtatg attatggttt gcgtcccgtt
     3181 cttaagggct ataacactat cactcctgaa tttataagat taggggtaag aaatttcttt
     3241 gataatttac ttgttccttt gcgttttgta ggcaatattt tgcagtttaa atttgaagaa
     3301 gcgggagaag aatttaaaag atttaccacc aataccatta tgggctttgg tggacttatg
     3361 gatatggcat caaaaatggg tcttaaaaaa catcccgcgg acttaggaac cgttttggct
     3421 cactggggtg taggaagcgg ttttcatatt gtcttaccta tactcggccc tagtaatctt
     3481 agagatactc ttgctttacc tgcaacttgg tatgcaagtt ttactgctta cattgatcct
     3541 acttgggcaa gtatagctat aagtgcttat ggatttggta atgaacttag ttttagactt
     3601 gatgaaattg atgaaattta tcacaacacg cctaatttat atccattctt gcgtgatgct
     3661 tacgagcaaa gacgcaatga acttagcaaa taaaggaaaa taatgaaaaa aatattttta
     3721 atcttggctt tattttttaa tgcttttgcc ttacagctag atgaaatttc tagtactatg
     3781 caaaaaaaca ttgatgcaag cttaaaactt ttacaagata gcaaagaaga caaaaaacaa
     3841 gctgctgatg gaatttttaa actttttgat agcataatag attataaact catggcaaaa
     3901 ctcagtcttt cgaaaaatta ttctaaatta aatccaaaag aacaagaaaa atttaccaca
     3961 gcctttgaag caagtcttaa aaaaagtttt accgataaac tcagtcttta taaagatcag
     4021 gttttaaagg tcaaaaatgg tgagttaaaa aatgaaaaac gctatttttt aaccacttct
     4081 atggtagtag atggggaaga aaaaaatatc attttcaaat tttacaatga taataacaac
     4141 tggcttgttt atgatgtgga tgttttaggt gtgagtatag tacaaactta tagatcacaa
     4201 tttggagata ttttagccaa ccaaggcttt gatgccctac ttcaaaaact tgagagtatt
     4261 gtcatagaat aatgtttgca aagcttttaa agttttttat ttctcgtcca aaaagtactt
     4321 tttttggaac cttgtttata tgcctgtttt taagcttttt tgcttttaag cttagcgtag
     4381 atgcaagtgc tgaaagttta cttttagaag atgatgcaga tttaaaaact tttagagaaa
     4441 tttcaaaaca ttataaaagt gataattttt tacttttagc cttcaaaccc tatgatgaaa
     4501 aacctttttc aaatgaaaat ttagccaaat taaaaaaact tcatgaagaa ttagaaaagg
     4561 cccctttagt agagcgcgtt tttagcatca tcaatgcccc tttgcttcaa agttcacaaa
     4621 atacggattt aaaagaactg ttaaaaaata tcccaaacat agaaagccaa gatataaacc
     4681 gcacaaaagc ccgaaatgaa attttaaata gtccctttta taaaaataat atcatctcaa
     4741 aagatggaaa agtaacaggg cttattattt acttaaagcc tgatacagtt tataatgatc
     4801 ttgtagaaaa acgcgatctt gctaccgatg aaaaagaaaa agatcaaatt cgtcttgcta
     4861 taaaaaaaca tcaagacaag caaaaagtta tcacgaaaca aagtctagat actattaaaa
     4921 gcatagttcg aaattatgaa aaaaataaag atacgctcta ccttggtggc gtaagcatga
     4981 tcgctgatga tatgataact tatataaaat ctgatcttgt actctatggt gtttctcttg
     5041 tatttttact aggatttgca ctttattatt ttttccgttc atggcgcttt gtttttttac
     5101 ctctttttat ttgttttata agcttaagtg cagctagtgg agtttttgca cttttaaatt
     5161 ttcaaatcac agttatttca tcaaattaca ttgctttggt tttaattatc accttaagtg
     5221 tagttgttca tttgatcacg cattttatcg aaaataccca aaatcatccc aaagctacag
     5281 ttgagcgcat agtgcttgaa accttactag ccaaagcaaa tcctagcctt tatgccattg
     5341 ttacaacgat gataggattt ttttctttaa tgctttcaaa tatcgaacct atcataaaac
     5401 ttggtattat gatgagtata ggtataggtt tagctcttat ctttagttat ttatttttag
     5461 caagtatctt agttctttta aaaccaaaaa actatcataa aaaagagttt aaatttaatc
     5521 ttttagcctt ttgtgctaaa accgctcttg atcctaaaaa gcgtcgcatg atttatggaa
     5581 tttcagttct tgctataatc ttagctttaa taggcatttc aaaactcaga gttgaaaatt
     5641 cttttgtcaa ttatttcaaa gatggcagtg aaatcaaaaa aggacttttg gttattgata
     5701 aaaatctagg tggaaccttg cctttagaag tcatcattcg ttttccaaat aataaaaacg
     5761 atcaaaatac aagcaatact cttgatagtt ttgaaagcga atttgaaaat ttagccacac
     5821 aagaaactta ttggtttgac tctaaaaaaa cacgcattgc aaaaaaagtt catgaatttt
     5881 tagaaaataa agaatttgta ggctcgattt taagtcttaa tagtctttta accctaggga
     5941 aaaatatcaa cgatggaaaa gagttagatg attttgctct tgcgttttta aatgagaatt
     6001 tacctgctaa atttaaacaa gacttgcttt caccttttgt aagtatagag aataacgagt
     6061 taagatttag tatgcgtatt gttgattctg atccgaattt aagacgtaat gaatttttaa
     6121 tagatcttaa aaaacagctc aacgagcttg taaaaaatga tggagtagaa gttcaaatca
     6181 caggtataat ggtactttat aacaatatgc tccaaagtct tttttcatcg caatttgata
     6241 ctcttatatt tgtaatttta gctattttta tactttttat cattgttttt agagatttaa
     6301 aattttcagt tgcggctata ttggtaaatg ttattccttt aagtgtggtt tttgctctta
     6361 tggggctttt aggtattcct ttggatatga tgagtattac tatagctgct attgctatag
     6421 gtataggcgt tgatgatgct atacattata tttatcgttt tagggaagaa attaaaaaca
     6481 aaagcctaga agaagccatt atgatttctc accttagtat aggttcggca ctttattata
     6541 ctaccattag catagtttta ggttttagtg ttatgatgag tagcaatttt attccaacaa
     6601 tttattttgg aattttaacc gtttttgtaa tgattttgct tttaagtgga agtttgttct
     6661 tattgccaag ctttttaatc actatttatt ctaagaaaac caagtttcca aaccaacata
     6721 aagagcatat attaaaacaa taatagctat atattttaaa aaatttttca tttttatcct
     6781 ttgtttaaaa tctttaaaat gatttttgca agctctaagg ctttaaaacg atgagagatg
     6841 ttattcttct catccacgct aagctgggct aaggttttat caaaaccctt tggaataaaa
     6901 agactatcat aaccaaaacc attttcacct ttttctgtat ctattacttt tccatgcatg
     6961 gttccatgcg tactaaattc ccccatcaaa cctaccatag caatagcagc aacataatgc
     7021 gccttacttt gtttaaaacc tttttttatc atttcattga caagtttatc acggttactt
     7081 ttatcatcgc ccttaccgct aaatcgagca gaataaattc ctggatttcc ttctaaaaca
     7141 tctacacaaa tgccactatc atcacttaaa gcgataaaat cttttttttg cttttcatcc
     7201 aaagcattaa aaaccgctct tgctttaatc aaggcgtttt ctttaaaagt ttttccattt
     7261 tcttcaatct caaaaggcat tagaacttca tcaaaagcat aaatttcaaa atcttttaaa
     7321 atttctttaa gttctaaaac tttatgttta ttgctcgtag ctaggataat cttcataaca
     7381 aaagctccaa aataatatca aaaacaaaaa tatgatttta taaaatttat ccttgtgcgt
     7441 agcttttaaa tatcaaatga taaaacgatg ttaatcaatg cttaatccat ttcatagtaa
     7501 aattatccta atttaaattt caaatttaat aggaaattga taatgctaaa ttatgtctta
     7561 cccttatctt tcatagttgg aacaagattt tttgggcttt ttatagtttt gccagtttta
     7621 agtctttatg ctttaaaact tgaaggtgct aatgaatttt tagtgggact tttagttggt
     7681 gtttacgcct taacccaaat gattttacaa atgccttttg ggattttaag tgataaaatt
     7741 ggtcgtaaaa aaaccatgct cattggactg attattttta taataggctc tttaatctgc
     7801 tcttttgcgg aaaatattta caccatgctt ttagggagaa tgctccaagg tgcaggagct
     7861 attggagcag tagctacggc aatgataagt gattttatca cagaagaaaa tcgtggtaaa
     7921 gccatggcgg taatgggttc ttttatagga cttagttttg cagcctctat ggtcatttct
     7981 cctctaatga gtgcaaaatg gggtttatct agcctttttg atcttagtgc ggctttgtct
     8041 cttttatgta taattttact ttataccgtt gtacctaaag aaaataaaat cactcatgaa
     8101 aatgaaaaaa ctcctttttt tcatcttatt aaacaaaaaa atttagccct tatgaatctt
     8161 actaatttca tgcaaaaaat gcttatgagt atagcatttt taagtattcc tattattcta
     8221 gtaaaacatt taggctttgc ttctgataaa ctttggattg tttatagcgc ttctatggta
     8281 gcaggtttta tcgctatggg ctttgctgga agtttaggcg aaaaaagagg tttagctaaa
     8341 caaattttac tcttaggaat tgtttttttc atactttctt atcttttttt tgcttttagt
     8401 aattctattg atttttttat catagcagtt gtgatttttt ttataggttt taatttacac
     8461 gaacctatta tgcaaagttg tgcatcaaaa ttttgtaaag ttcatgaaaa aggtgcagca
     8521 ttagggttat ttaatgcttt tggatatggt ggaagtttta taggtggtat tatcggaggg
     8581 atatttttac atctagatac cttaaatctt ttagctatta ttttagtaat tttagctcta
     8641 atttggcttg tggcattatt tttcttaaaa aatccagctg attttaaaaa cctttatcta
     8701 cctttagaaa cgcctttaaa tttcagtact tttggtgaaa atttaggggt tgtagatatt
     8761 tataaaaact ctaaaaatct tgttgttaaa tttgatagca aacttacaag taaagaagaa
     8821 ttagaaggca aattatgaaa aaaatattat ttttattctg ttcttttttt ctagcttttg
     8881 caaaaccaag tctagagata cccaagctct caaaacaagc aaaacaaaac tttattttag
     8941 aaaatgtcaa atttaattat aatggcacaa tatataaaat ttttatagct aaaaacaaga
     9001 atgaaaactc aaattataaa tataaaatca tttatttact cgatggaaat gccttttttc
     9061 ctcttttttt aaatcttttc aacactcctg tcaaagaaaa tcttttaatt attggaatag
     9121 gttatgataa taatttagct tttgatacac aaaaacgcac taaagattat acgcctacaa
     9181 caaatttaaa taaacaaggt ggaggtagta aagaatttag aaatttctta ataacccaac
     9241 tcatccctta tatcaacaaa atgtatccta ttgattttag ccatcaaatt ctctttggac
     9301 attcttttgg aggacttttt gccattgata cacttcttta tgatagtaag atttttagtc
     9361 attattttat tatttcacct tctttatggt gggataatag tgagttttta cctaatatca
     9421 taaaattaca aacttgccct aaaatttaca tcggattagg ttcattggaa acaaattcaa
     9481 gtattatcaa aggtgtagct aagctcaatg ctcaaaaact tagcgaaaaa atatccaaag
     9541 aaactaattg taaaactcat tttaaacttt ttaaaaatga aactcatgga agtgtcatat
     9601 ctaaagctat gctgtggatg aaaaagcttc ttgatcttaa ttaatcattg cttttatcat
     9661 cacttttgcc ttgcaatctg cacagcaata aagtgttttg attttatcct catcattacc
     9721 aaatttaggc ttcattaaat tggctatttt ttctacagct tttttggtcg caaattcttt
     9781 accgcattct atacaggaaa aaagctcatc ttttgccatg gtttgatatt caaaataaga
     9841 agctctaaac tccattccac tacgaaataa ttttaaagta tctttttcag cacaacttaa
     9901 ctcacaatac ccacaagtcg tacaaagaga agcattgaat ttcaaagcat tttcttgttt
     9961 atcagcgatt aaagctccta cattacaggc acccacacaa gaaagacaaa gcgtacaggt
    10021 attaggattg atttctacct taccataacg caaccattcg ccactttcta tactaccaaa
    10081 atcttcattt tttatcattt cttgcattct tttggcaaaa ttttctcttg tagttaaggt
    10141 gttattatga aaatcatatt ttaaatcttg tatgaattct tgctctttta aaacattttg
    10201 caattctttt tcatctttag caacaaaaat agcttttttt tgaaattttc tctcaaaaaa
    10261 agtatttaaa agcataatgg cttcattgct accacgagat acaaagtccg tataaaaaac
    10321 caaatttgca ccactatttt gcaaaagtgt taaaaaatgc atagaagaaa gccatttttc
    10381 accctctatc ataaagggta aaacatcttt tggtaaagca agatttaaat tttctaaaga
    10441 cattttttta ggaatgatta aaattttttt atctttataa aactcacaaa gggtaaaaaa
    10501 actttctctt ggcataggag cataatcaag cgatccgcta ggacacacac taatacatcc
    10561 tccacaaccc aaacaatcca cttgagaaaa ttctaaatgc tttttttcat catcttttaa
    10621 aatcgccaca gtaggacaaa tttcagcaca ttttgcacaa tgctcactgc gtctttcatg
    10681 gtattgacac acgctagcat tatagctaat ataagtttta taaggatatt ttggactttt
    10741 gctttgcaaa aactctaaca atgcttcaag attttcaaaa tttaaaagat tataacatcc
    10801 actttgtctt gtaaaatctt tacgcacaac gcttaaattt tcagctttaa aaagtaaaaa
    10861 atcaaaatct atttccactt cttcgccttg atttttaacc acagcacaaa gctcccccac
    10921 acttccaaaa acagctaaaa tttctgcact acttaaagca ataaccttaa atccatgttc
    10981 ttttaaaaac tctacagttt gagtatcact atctgccaaa atcaaacgat tttgcacttc
    11041 tttgctttgt tctaaatcaa gccctaaatc ataaacgcta gcccttgctt cataaagcgt
    11101 taaaacattt ttactttgct ctaaaatttc atcttgagaa tttttaagat aaaagttaat
    11161 ctctggggca taaatttgtg ctttttgatt tttatcattg caaattaatg cttctttatc
    11221 atttgcctga tctaaaattt caatagcatc aggcaaaggg attaaaacat cattttttat
    11281 ataaacaaaa tcttgcattg tcttccttaa tctctttaaa acatcatttt ataaattcta
    11341 tgttaaaata accaaatatt ttcttaaggc ttaagatgaa caaatttaga acttttccac
    11401 agattaacac tcttattgaa gatgagagtt taaaatccta tcctttttat atcaaagcat
    11461 ttttttgtaa aaaagttgtc gcaaaactaa aagaaaattt ttcccaagat gaaatttcta
    11521 aagataaact acttttagaa atcaaaaaag aaatcaaaac tttttaccgc aaagatttac
    11581 aaagtgtgat caatgcaagt ggagtggtta tacacacaaa ccttggcaga agtgtaatcc
    11641 atgaagaact ttatgaagcg tgtaaagata tcatttgtaa ttattctaat gtagagtttg
    11701 atttagaaaa tggaaaaaga ggctctcgct atgctttggt gttggaaaaa cttaaaatgc
    11761 tttttgaatg cgaagatgct ttagtagtca ataacaacgc tgcggcagtt tttttagtgc
    11821 ttaattctct ttgttatgat aaggaagtca taagctcaag aggagaactt atagaaattg
    11881 gcggaagttt tcgtgtgcct gaagtgataa aagctgcagg tgtaaagctt tgcgaagttg
    11941 gaactagcaa caaaacacac ttaaaagact atgaacaagc tatcagtgaa aataccgctc
    12001 taattttaaa aacccacaag tctaatttcg ctcttatggg ttttcatagt gaagcaaata
    12061 taaaagatct acatgaacta gcaaaagaaa aagggctttt gagttattat gatctaggtt
    12121 ctggctggtg tgaaaattta aatgaaaagc tgattaaaaa tgaacctaaa atcaaaaaac
    12181 tcgtacaaga atgtgatatt ttaagtttta gtggagataa actttttggt agtgtgcaag
    12241 caggcattat acttggaaaa aaagaactca tagaaaaact taaacaaaat caacttttaa
    12301 gaatgctaag agtggataaa ttaaccctat cttttttaaa tgaaagctta aaagcttatt
    12361 tacaaaaaga ttatgaaaaa attattacct taaaactttt aaatgatgac ttatccttta
    12421 tagaagaaaa agctttaaga gtgcaaaaag aattaaaatt tcaaacccaa ctcaaaaaaa
    12481 gcaaaagttt agtaggagga ggttctatgc ctgataaaag tttagatact tatatactaa
    12541 cttttcaagg agatgcttta aaactacaaa ctcgatttag aaaagaaaat atcataggac
    12601 gcattgaaaa tgatgaattt gttcttgatt ttagaactat acgagaaaat gaacttcaaa
    12661 aacttattct tacaattaat caaatggaaa acttatgaaa tctgttatta taggaaccgc
    12721 aggacatatt gatcatggaa aaacttcact cattaaagct ttaaatggtt ttgaaggcga
    12781 tagtttaaaa gaagaacaag aaagacaaat caccattaat ttaagttttt caaatcttaa
    12841 attaaaagat aaaaacattt cttttatcga tgttccagga cataaagatt tggttaaaac
    12901 tatggtaagt ggagcttttg gctttagtgt ttgtttattt atcgtagata ttaacgaggg
    12961 tttaaaagaa caaagtttag aacatttaga aattttaaaa attcttgata ttaaaaatat
    13021 cattttagta cttagcaaat gcgatctttg tgaaaacata gagcaaaaaa gtgtagaaat
    13081 tttagaagag ttaaaaaatt tagattatcc cattttaaaa gtatttcata ccagtataaa
    13141 aaataatcaa ggcatagaag aattaaaaaa ttatctttat accatagaaa acaaagaaaa
    13201 ttatgaagaa ctgatttttc attattatat cgatagagtt ttttctctaa aaggtatagg
    13261 aactgtcgtt acaggcagct tgaatgaagg aagtatcact ttaaatgaaa aaatcatctg
    13321 tttagacact caaaaagaac tcattgttaa aaatatacaa aatcacgata ccaatctaga
    13381 gcaaatcaaa gcttgcaacc gtgtggcttt aagtttaaat tgtgattata aagagttgaa
    13441 aaaaggttat ttactaagta aaaaaggtta ttttaaagcc tttaaagaat gcgatgcttt
    13501 agttaaagca aaaaatttac aaaatagcaa aatgattttt tgtgtgggtt caagacaaat
    13561 agaatgtaaa ataaatatat taaaaaaact agaaaatgat gaattttttg tgcattttag
    13621 ttttgataaa aatgtatttt taagttttga tgaggctttt attttattac aaaacaatcg
    13681 tgttataggc ggtggtaagg ttttaaatcc tttaagcgaa cctttaaaaa aagaacaaaa
    13741 aaataaattt ttaatgtttt tgaaaaataa agattttaaa gcggcttttt ctttcttaaa
    13801 agacgcacac aaatacggct ttggcttgct ttcaagttat cagagattta aactttctca
    13861 tcaaaaagca ttgaaattag caaaagaatt aaatcaagta tttgttgatg aaaaaaatct
    13921 taatgtatat catttacaaa gtctagaaga aattaaaaat ttcatcaaat tcatacttga
    13981 aaaaaatcct tatgccatgc tttcagcaca ttctttagct ttaaggatta cttgggcaag
    14041 tgaaaatttt tgcgaactcg ggcttaaaga gatgtcaaat ttattggatt ttcaaaatgg
    14101 aatttatttt aaaaaaggca tagattttga aaaacttcaa gaaaaaaata ataatcaatt
    14161 atatgaaatt ttaaaaaaac aaggtattaa acccgaagct ccttataatc tttatgattt
    14221 tttagaactt gatagaaaaa gcggagataa tatactcaaa aaacttaccc aaaaaggctt
    14281 agttgtaaga ctttcacaca atctttttat agaaaaacaa gctcttgaaa aacttatgca
    14341 agaatgttta aatttattaa aaaatcaaag tcttgatgtg caaagtatga aagaatattt
    14401 caatctttca agaaaatatg ctattgctta tttagaatac ttagacaaat ttcctcaagt
    14461 aagcaaagaa gctgaaaaaa gatttttaac aaacatttag aaaatcatta tagaattaaa
    14521 cataatttat ttaaaggatt tataaactat gaaaaaatta agtttaattc ttgcctgttc
    14581 agcatctttg tttgctgcaa gtaattcaga aattagtgat ttttattcaa aaagcattaa
    14641 agcacaattt ccaaatgcta ccgttagtgt atcaaatcgt caaaaggttg gtaatacggg
    14701 ttttgaaagt gttattgtaa gcgttgaatt aaatggacaa aaacaagaaa acattctttt
    14761 tacaaaagat agtcttatta cccctgatct tatcgacttg aaaacgggaa tttcttatgc
    14821 tcaagaatat gaaatgaaaa aatttcaaga agcaagagaa aattttacaa aaaatgctaa
    14881 agctgtagca caaaaagaaa ccatggtaat agctttagga gataaaaata aacccgcaat
    14941 ttatgttttt tcagatcctg aatgccctta ttgtagagaa catttagctc aaattgataa
    15001 tgaacttaaa aactatcaag ttaattatat tttaactcca gtacatggaa aatctgcttt
    15061 tgaaaaatcc gctctaatct acaaagaagc aaaaaaagca aaaaatgata aagaaaaaat
    15121 cgcaatttta aacaaatact atgatgcaaa tatcaaaaat tatccaaaag taagcgatgc
    15181 agaattaaaa gaagtttttt ccttatatga aaaatatcgc tcattaggtc ttagcgctac
    15241 tccaactatt attaaataaa cctaatgtct aaaattactt taattttaag cttttttata
    15301 acactcttta tgagtgcttg caccaataca actttcacac aaagctttat tcaaacaagc
    15361 aatgaaggca tttttatcag atcacaaaaa caacaaagtt ttaaaatttc ctttcaaaat
    15421 cctagtcaac ttcaaactac tctagataga gatttggctt taaaacttaa aaatttaggc
    15481 ttaaaagaag taaaagagaa tgcagattat gaaattttaa tcaatcttgt agatatgaaa
    15541 aagcattctt atgctcaaaa aatcacaact tcagcaagat ttttttatga ttttgatcct
    15601 ttggaaagcg atggagaatg gatggtagaa aactactata ctatgcaagt taatttacaa
    15661 atcaactcta aaaatcacaa ttctcaaaaa acaagtcttc ttgcaagaac agcttatctt
    15721 ggaaataaag aacgctgtca attatcttta aaaaataaaa ttataaatca aatagtgagt
    15781 tttttttatt tttaagaaaa agacaatcaa gagtataaaa actcttgatt ttaagaatta
    15841 ttaagcaaaa taaggtttga tttgttctat ccaagcatca attcttgatt cagtttgatc
    15901 ttcttgatta tcattgtcaa gagcaagtcc aacaaattta ccatctacaa ccgcatcact
    15961 tgcttcaaat gtataaccat cagttgaaac ttctcctacc aaatttgcgc ctgcatcttt
    16021 taaattttga gctaatttac ccatgccacc acaaaaagta tcagaataac tttcactatc
    16081 acccatacca aatacagcta cggtttttcc accgagacta agccctgaaa aatcaaaacc
    16141 atcccaatca tcttgtaaat caccacttcc ccaagttgaa gttccacaaa ttaatttatc
    16201 gtaagaattc attttagccg catcaatatc tgagatatta aaaacatcgc taattccaag
    16261 ttttgaagca attgtattag ccgctccttc tgtatttccc atagcactac catagattac
    16321 tgctactgac attattttct ccttataatt tgatttgata ttttatacgg aactaatttt
    16381 aacatagttt tgtttaaatc acacaaaaaa tgttttattt caataaaatg tgtgaaattt
    16441 ttgttacgcg gacaaacaat ataaaatttt tcaaaattgt tttcttttat taaattcaat
    16501 aattcatgaa tttcattttc aatttttaaa ttatatgtat taatctcttt gcaaagtggt
    16561 aaaattgcaa atttcttatc tattataata agatcaccat cttgatctat atttttttca
    16621 ttattttgaa aagaaatctt atcataaaca taagagctaa ataaaatttg cacatcaaaa
    16681 caaatgccat aaagataaat tcttaaaagt cttaaaaaat cgacattctt agatatttta
    16741 gtattaaaaa tcaagctttt tcttttttga aagtaaaaag cgtatgcatt aagcttgata
    16801 tttatatttt gaatcttacc aaatgaaaca tgcattatat catgtaaaaa atttccaaat
    16861 atcattttta aactcttggt attttttgca tatgaaagag gaatttttag agcgctatca
    16921 acgctcgcat tatattgagt taaaaaagtc aacataagct cttgattgtt taaatagcga
    16981 taaatttgcg gtataaattc tcgcttatca tcaaatccaa ataacatctt taacctttat
    17041 agcaagaaaa ttctttatta agattaaaaa ttttacaata ttcacaatac acacaactta
    17101 cacttctttt tgcacaaact aatggaattt tacgcttttt agcttcattt ttgatttttt
    17161 tcatagtatt atgatttaaa aagcttgtta acattactat acattctgta tcacaaggaa
    17221 tcggcttgcg attaactcta ttttcattac gcgcatccca gtgttctatt tttttagcac
    17281 ctaaatcatg taaaacagct ctaataggag tgatttcatc tgcaccaata accaaaactg
    17341 acataaattc tcctt
//
LOCUS       DAPIWV010000024        17285 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.025, whole genome shotgun sequence.
ACCESSION   DAPIWV010000024 DAPIWV010000000
VERSION     DAPIWV010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17285
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.025"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            149..751
                     /locus_tag="RJ272_000559"
     CDS             149..751
                     /locus_tag="RJ272_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7381676.1"
                     /translation="MKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHIHKTDFKD
                     ITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKNIE
                     FINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIAIK
                     FDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIEPKFLD"
     gene            839..1057
                     /gene="infA"
                     /locus_tag="RJ272_000560"
     CDS             839..1057
                     /gene="infA"
                     /locus_tag="RJ272_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDV7381677.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1229..1342
                     /gene="rpmJ"
                     /locus_tag="RJ272_000561"
     CDS             1229..1342
                     /gene="rpmJ"
                     /locus_tag="RJ272_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDV7381678.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1345..1710
                     /gene="rpsM"
                     /locus_tag="RJ272_000562"
     CDS             1345..1710
                     /gene="rpsM"
                     /locus_tag="RJ272_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDV7381679.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1720..2112
                     /gene="rpsK"
                     /locus_tag="RJ272_000563"
     CDS             1720..2112
                     /gene="rpsK"
                     /locus_tag="RJ272_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDV7381680.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2140..2766
                     /gene="rpsD"
                     /locus_tag="RJ272_000564"
     CDS             2140..2766
                     /gene="rpsD"
                     /locus_tag="RJ272_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDV7381681.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2779..3792
                     /locus_tag="RJ272_000565"
     CDS             2779..3792
                     /locus_tag="RJ272_000565"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDV7381682.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDTYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3796..4149
                     /gene="rplQ"
                     /locus_tag="RJ272_000566"
     CDS             3796..4149
                     /gene="rplQ"
                     /locus_tag="RJ272_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDV7381683.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4322..5221
                     /gene="hisG"
                     /locus_tag="RJ272_000567"
     CDS             4322..5221
                     /gene="hisG"
                     /locus_tag="RJ272_000567"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDV7381684.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5229..6515
                     /gene="hisD"
                     /locus_tag="RJ272_000568"
     CDS             5229..6515
                     /gene="hisD"
                     /locus_tag="RJ272_000568"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDV7381685.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKHLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6512..7570
                     /gene="hisB"
                     /locus_tag="RJ272_000569"
     CDS             6512..7570
                     /gene="hisB"
                     /locus_tag="RJ272_000569"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDV7381686.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVHGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7567..8154
                     /gene="hisH"
                     /locus_tag="RJ272_000570"
     CDS             7567..8154
                     /gene="hisH"
                     /locus_tag="RJ272_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDV7381687.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKTKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8151..8882
                     /gene="hisA"
                     /locus_tag="RJ272_000571"
     CDS             8151..8882
                     /gene="hisA"
                     /locus_tag="RJ272_000571"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDV7381688.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            8867..9805
                     /locus_tag="RJ272_000572"
     CDS             8867..9805
                     /locus_tag="RJ272_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HDV7381689.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            9806..10573
                     /gene="hisF"
                     /locus_tag="RJ272_000573"
     CDS             9806..10573
                     /gene="hisF"
                     /locus_tag="RJ272_000573"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDV7381690.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            10575..11198
                     /locus_tag="RJ272_000574"
     CDS             10575..11198
                     /locus_tag="RJ272_000574"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDV7381691.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(11223..12383)
                     /locus_tag="RJ272_000575"
     CDS             complement(11223..12383)
                     /locus_tag="RJ272_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HDV7381692.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(12409..13515)
                     /locus_tag="RJ272_000576"
     CDS             complement(12409..13515)
                     /locus_tag="RJ272_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HDV7381693.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            13638..14753
                     /locus_tag="RJ272_000577"
     CDS             13638..14753
                     /locus_tag="RJ272_000577"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HDV7381694.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            14750..15637
                     /locus_tag="RJ272_000578"
     CDS             14750..15637
                     /locus_tag="RJ272_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7381695.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            15615..16775
                     /locus_tag="RJ272_000579"
     CDS             15615..16775
                     /locus_tag="RJ272_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HDV7381696.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            16780..17280
                     /locus_tag="RJ272_000580"
     CDS             16780..17280
                     /locus_tag="RJ272_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDV7381697.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
BASE COUNT         6432 a         2507 c         2978 g         5368 t
ORIGIN      
        1 agaagaaaaa accacaagca aaagttcaaa tcaaacccat ataatctctc ttaaacaatc
       61 tgatgatgaa tttttaaatt tattattttc ttttttagtg ccacaaagcg atgaagataa
      121 gaattttata gaaaaaactc gcacaaaaat caaaagaaat gagcataata ttgctctgat
      181 aaaaaatcca aattttaatg ctttaataga cacagggttt ttagatacta ttgatacatt
      241 aaaagaaaaa ttacatatcc acaaaaccga ttttaaagat atcactcata ttatcttaac
      301 acacgcgcat cctgatcata taggtgcttt aatgagcgaa gaaaatcttt ttccaaaagc
      361 tcaaatttta atcgataaaa aagaatatga tttttggatc aaaagcgata gacaagaaat
      421 taaaaacacc ttgcttaaac ttaaaaatat agaatttatt aaccactcta aagatttaat
      481 ctttcaaaat tcaggcatta aagccatacc tgcttatgga cataccccag gacaaaatgc
      541 tataataatt gatgataaaa tagtcttttg gggagattta cttcatcttt atgatataca
      601 aattccaaaa cctaaaatcg ctataaaatt tgatatagat caaaatgagg ctatacaaac
      661 aagggaaaaa ctacttaaag aatttaaaga aagaaaactc aaagttatag ggactcatgt
      721 gccttttatc gaacctaaat ttttagatta attacttaaa aattactaaa aattaagtaa
      781 aaattttaat aatttttgct aaaattatag cctttttatt tcatgaaagg agaaaatttt
      841 ggcaaaagat gatgtaattg aaattgatgg caccgtactt gaagcattgc ctaatgcaaa
      901 tttcaaggtt gaacttgaca acaaacatgt aattttatgt catattgcag gaaaaatgcg
      961 tatgcattat ataagaataa tgccaggtga taaagtaaaa gtagaactta caccttatag
     1021 ccttgataaa gggcgtataa cttttagata taaataatct aagttattta aaagctaatt
     1081 ttagataaaa ttagagtttt tgcgacaaat tacatcgaac tatatgaaga agtattttta
     1141 aaatccacca cttattttga aaatagttgg ttattcataa aacctgatgt agtcgtaaat
     1201 caagtggaat tcattcaagg agacgctcat gaaagtgaga ccatcggtta aaaagatgtg
     1261 cgacaagtgc aaagtagttc gccgtaaagg cgtggttcgc attatttgcg aaaatccaaa
     1321 acataaacaa agacaaggat aaacatggct cgtattgcag gtgtggattt accaaagaaa
     1381 aaaagaattg agtatggact aacctatatt tatggtatag gacttttcac ttcaagaaaa
     1441 attctagata aagtaggaat ttcttatgat aaaagagttc atgagttaag tgaagatgaa
     1501 gcagcagcta tccgtaaaga aattcaagaa aactatatgg ttgaagggga cttgagaaaa
     1561 caagttgcta tggatattaa agcgcttatg gatttaggaa gctttagagg tttaagacac
     1621 agaaaagggt taccagttcg cggacaaaaa acaaaaacaa acgcaagaac tagaaaaggt
     1681 aagagaaaaa ctgttggtgc aaaatcataa ggataaatca tggcaaaaag aaaaatcgta
     1741 aagaaaaaag tagttaaaaa aaatatagca aaaggtattg tttatatcag tgcgactttt
     1801 aacaatacta tggttacagt aactgatgaa atgggaaatg ctatcgcttg gagtagtgca
     1861 ggtggtttag gatttaaagg ttctaaaaaa tcaactcctt atgcagcaca acaagcagta
     1921 gaagacgctt taaataaagc aaaagaacac ggaattaaag aagtaggcat taaagtacaa
     1981 ggaccaggaa gcggtagaga aactgctgtt aagagtgtag gtgctatgga aggaatcaaa
     2041 gtaactttct taaaagatat cactccatta gctcacaatg gttgcagacc gcctaagcgt
     2101 cgtcgtgtct aagatataag aaaaatttag gagaatatta tggcaagata tagaggacca
     2161 gtagaaaaat tagaaagacg ctttggtgtt agcttagcat taaaaggaga aagaagacta
     2221 gctggcaaaa gtgcactaga taaacgccct tatgcaccag gacaacacgg agcaagaaaa
     2281 ggtaaaatta gtgagtatgg acttcaatta agagaaaaac aaaaagctaa atttatgtat
     2341 ggagtaagcg aaaagcaatt ccgtcgttta tttgctgaag cagcaagaag agaaggaaat
     2401 acaggggtat tacttatcca acttttagaa caaagattag acaatgtagt atatagaatg
     2461 ggttttgcta caacacgtcg ttttgcaaga caacttgtaa cacatggaca tgttttagta
     2521 aatggtaaaa gagtggatat tcctagcttt agagtagaag caggtgctaa aatcgaaatt
     2581 atcgaaaaaa gcaaaaacaa tcctcaaatt acaagagcta tcgaacttac agcacaaact
     2641 ggaatcgttg cttgggttga tgttgaaaaa gataagagat ttggaatttt cacaagaaaa
     2701 cctgaaagag aagaagttgt cattccggtt gaggaaagat ttatcgttga gctttactct
     2761 aaataatagg ggctaaatat gagaaatatt acaacatctg cttatacgcc aacagaattt
     2821 acaatagaaa acattagtga tactgtggct aaaatcagtg cttggccttt tgagatcggc
     2881 tatggaatca ccctagccca tcctttacgc cgtttacttt acactagcac cataggatat
     2941 gctccaactg cgattcatat tgatggcgta gctcatgaat ttgatagcat gcgtggtatg
     3001 cttgaagatg tagcactttt tatcattaat ctaaaaaaac tacgctttaa aattaaaggc
     3061 gaatcaaata aagaaatagt agaatttagc tttaaaggct caaaagaaat ttacggcaaa
     3121 gatctaaata atgatcaagt agaggtagta aacaaagaca cctatctagc aactatcaac
     3181 gaagatgctg aactcaaatt cacattgatc gttgaaaaag gtattggcta tgtaccaagc
     3241 gaagaaatta aagagcttat aaatgatcct aaatttatag ctttagatgc tttctttaca
     3301 cctgtaagag aagcaaccta tgatattgaa aaagttttgt ttgaagataa tcctgattat
     3361 gaaaaagtgg ttttaactgt aacaactgat ggacaaatca ctccaaatga agcttttcaa
     3421 aatgctctag aagctatgta taaacaatta tcagtatttg ataaaatcac caatgttaga
     3481 agcgtaatta aaaatcaagc aacaagcaat gaactagaaa atactaaatt attgcaaaac
     3541 attacagatt taaatttaag tgctagaagt tataattgtc ttgaaaaagc aggagtagtt
     3601 tacataggcg agcttgcttt gatgagtgta agtgaacttg cagggcttaa aaatttaggt
     3661 aaaaaatctc ttgatgaaat taaaaacatc atggaaagta taggttttcc tgtgggaact
     3721 tctaagctta gcgataataa agaaatactt aaaaataaaa tcgcagaatt aaaagcacaa
     3781 aacgaaggat aaagaatgag acataaacat ggatatagaa aacttggcag aacttcatct
     3841 catcgtgctg ccttattaaa aaatttaact atagctttag taaatagcgg aaaaatcgaa
     3901 actactctac caaaagctaa agaattaaga ggttatgtag aaagattgat tactagagca
     3961 agacttggag attttaacgc tcatagagca gtttttgctt cattacaaga taaaaacgct
     4021 actaataaat tagtgactga aattgctcca aaattcaaag atcgcaatgg tggatataca
     4081 agaatcatca aaacaagaat tcgccgtggt gatgctgctg aaatggcttt catcgaattt
     4141 gtagcttaat caaatcctag cttttgctag gattaatact tcaattaaat accttaaaaa
     4201 taaaaagttt taaataatta ttttaaataa aattaaattt atttattttc taaaaccctt
     4261 gctaaaaatt caactactta tgctaatata agtttttaat ttttaatttc aaggatatgt
     4321 tatgcaagaa aacactcgtt tacgcattgc gatacaaaaa tcaggtagac tttcaaaaga
     4381 atccatagag cttctttcag aatgtggtgt taaaatgcat atccatgaac aaagcttgat
     4441 cgctttttct acaaatttac ccatagatat tttacgcgtt agagatgatg atatccctgg
     4501 gcttattttt gatggggttg tagatttagg cattataggg gaaaatgttt tagaagaaaa
     4561 tgaacttgaa cgccagtctt taggagaaaa tccaagctat aagcttttaa aaaagctaga
     4621 ttttggatat tgccgtcttt ctcttgcctt acctcaagaa aataaatttc aaaatttgaa
     4681 agattttgaa ggcttaagga tagctacttc ttatccacaa cttttaaagc gttttatgaa
     4741 agaaaatggg attaattata aaaattgtac gcttacaggt tctgttgaag tagcccctag
     4801 ggcaaattta gccgatgcga tttgcgatct tgtttcaagc ggggcaactt tacaagcaaa
     4861 caatcttaaa gaagttaaag tcatttatga atctcgtgct tgtttgattc aaaaagaaaa
     4921 tgctttaagt aaagaaaaac aagccttagt ggataaaatt atgttgcgtg tagcaggagt
     4981 aatgcaagca agagaatcta aatacattat gcttcatgct ccaaaagaaa agcttgataa
     5041 aattcaagcc ctacttccag gagttgaaag accgactatc ttacctttag cacacgatga
     5101 aaaaaatgta gctttacata tggtaagtaa agaaaatctt ttttgggaaa ccatggaggc
     5161 tttaaaagaa gaaggtgcga gttcgatttt agttctgcct atagaaaaaa tgttaaagtg
     5221 agtaaaaaat gcaaatttta gtatatgata atttggatga aaaacaaaaa gaagaagcgt
     5281 taaaacgccc tgctataagt gcgaaagatg aaatttcaaa aatagtaagt tctatcatta
     5341 aagaagtgca agaaaaaggc gatgaagctt tgatagaaca agctttgaaa tttgataagg
     5401 ctgaaatttc aaagattaaa atcactcaag aagaaatcac tcaagcaagc aagcatttag
     5461 ataaagattt acaagaagct attttagtgg cttatgaaaa tatcaaaaaa tttcacgaag
     5521 cccaaatccc acatgaaatc gctcttgaaa ctacaaaagg cgttaaatgt gaagttttaa
     5581 cacgccctat agaaaaagta ggactttaca taccaggggg tttggcacct ttgttttcaa
     5641 cggttttaat gctagctatt cctgcaaaaa ttgcaggttg tgaaaaaatc gttttagcaa
     5701 gtcctgcaaa aatcaatgat gctgtgcttt tttgtgctaa gctttgtggc gtggatgaaa
     5761 tttatcaaat gggtggtgca ggagctatag cagctttggc ttacggtacc caaagtgttt
     5821 taaaggtgga taaaattttt ggcccaggaa atgcctttgt aaccgaagca aaacgccaag
     5881 taagtagtga tataaacgga gcagctattg atatgcaagc aggacctagt gaagttttag
     5941 tcatagctga tgatttagct aatgaaaaat ttgtagctag tgatttgctt tcacaagctg
     6001 aacatggtgc agattctcaa gtgattttag tgtgtttaag tcaagatttt gctaaaaaag
     6061 caagtgatga agtccaaagt caattagaac ttttgcctcg caaagaactt gcaagcaaaa
     6121 gcattgctaa ttcacgcatt atcatagcta aagatttaaa tcaagcctta gaaatttcaa
     6181 atctttacgc ccctgaacat ttgatcatac aaactcaaaa tccacgagaa cttttaaaag
     6241 gtgtaaaaca cgcaggatca gtatttttag gagcttattc cccagagtct atgggtgatt
     6301 atgcaagtgg gacaaatcat gttttaccta cttatggact tactaaaacg cattctagtt
     6361 taggtttggc agattttagc aaaagaatga ccgttcaaga gttaagtaaa gaaggttttt
     6421 tagctttagg taaaagtgtt gaaattttag cacaaaatga gcatttagac gcgcacaaaa
     6481 atgcagtaac ttttcgtttg gaaagcttaa aatgagtcaa aaaatccttt ttatagatag
     6541 agatggcact ttaatagagg agccaaaaag cgattttcaa atcgatactc ttgaaaaatt
     6601 gcgttttgaa aaagatgcta ttcccactct tttaaaacta aaaaaatttg gatttaaatt
     6661 tgttatggta agcaatcaag acggtcttgg aacaccaagt tttccaaagg aaaattttga
     6721 aatcgctcat gaaaaaatgc ttgatatttt aaaaagttgc ggtatagaat ttcaagatat
     6781 ttttatttgt ccgcattttg aaaatgaaaa ttgtgcttgc agaaaaccta aaaccgctat
     6841 gttagaagag tatatcaaac acgaacttta tgataaggag caaagttttg ttataggaga
     6901 tcgtgagagt gatatgatct tggcttcaaa tttaggcgtg catggtttaa aatacggcga
     6961 actttcttgg aaagaaatag aaaatgaaat tttaagttct tttagaagcg cgagttatca
     7021 aagaactact aaagaaacag atataaaagt aaaggtatgc ttaaatgggg gtaaggttag
     7081 cattaaaaca ggtattgatt tttttgatca catgttagag caaatcgctg tacatggagg
     7141 tatagggctt gaaatttctt gtaaaggaga tttggaaatc gatgagcatc atagcgttga
     7201 agatgtagcc ttagcacttg gagcttgtat caaaaaagct ttaggggata aaatcggcat
     7261 tgcaagatat ggttttgctt tacctatgga tgagtgtttg gcaagttgtg cgatggattt
     7321 ttgcaatcgt ccccatttag tctataaagc caaatttaaa aaatctcatt taggggcttt
     7381 aagcacagaa atgatcgagc acttttttta ttctttaagc tatgctatgg gcgtgagttt
     7441 gcatttaaaa gttaaaggca aaaacgatca tcataaagcc gaagggcttt ttaaagcctt
     7501 tgcaaaagct ttgaaaatgg cagtaaaaat agaaagtgaa aatttagcca gctctaaagg
     7561 agtgatatga aaatcatcat catcgataca gcctgtgcga atttagcatc tttgaaattt
     7621 tgtctagata gattaggttt taatgcaact atcagtaggg atttaaaaga acttgaaagt
     7681 gcggataagc tttttttacc tggagtgggt accgcaaaag aagcaatgaa aaatttagaa
     7741 caatttaatc ttattgattt tattcaaaat accaaaaaac ctttgcttgg tatttgttta
     7801 ggtatgcaaa ttttaggaaa tttttctgaa gaattaaatc aagaaacctt aaaactcata
     7861 gattttacaa ctcaaaaatt taaaactaaa gaaggcttta cttttccaca tatgggatgg
     7921 aatgaagttt atagctctca tgctttgttt aaaggcttag aaggggctta tttttatttt
     7981 gtgcatagtt attgtgtagg acttgggaaa tacactatag cagattgtga gtattcgcaa
     8041 aaatttagcg caagcgtaat gaaagataat ttttacggag tgcaatttca ccctgaaaga
     8101 agtagcgagg ctggggaaat tttaatttca aattttatta aggatatagg atgactcaaa
     8161 tcatacccgc actcgatctt atagatggcg aagtggtgcg tcttgtaaaa ggggattacg
     8221 aacaaaaaaa agtatataaa tacaatccct taaagaaatt taaagaatac gaaaaagcag
     8281 gagcgaaaga acttcatctt gtagatctta caggtgcaaa agatcctagc aaaagacaat
     8341 ttgctttgat agaaaaatta gccaaagaag tcagtgtcaa tttgcaagta ggtggaggta
     8401 tacgctctaa agcagaagtt agagctttgc ttgattgtgg agtaaaaaga gtagttatag
     8461 gatctatggc aattaaagat gcgactttat gtcttgaaat tttaaaagaa tttggtagtg
     8521 aagctatagt tttagcctta gatacgattt taaaagaaga ttatgttgtg gctgtaaatg
     8581 cttggcaaga agcaagcgat aaaaagctta tggaagtttt agatttttat agcaataaag
     8641 gcttaaaaca catactttgc acagatattt caaaagatgg caccatgcaa ggagtaaatg
     8701 caagacttta taaacttatc catgaaattt ttcctcatat ttgcattcag gcaagtggtg
     8761 gagtagcaag cttaaaagac cttgaaaact taaaaggaat ttgtagtggg gttatcgtag
     8821 gaaaagcttt attagacgga gtttttagtg tagaagaagg gataagatgt ctggaaaatt
     8881 gacctataaa gaattaatta tagaagtttt aaaacaaact aaaaagcctt taaatgtgag
     8941 tgaaatttgg caaaaagctc ttgaaaaagg cttagataaa aagctttcta gtataggaca
     9001 aacacccact caaacaattt ggaataggtt gcttacagat aaaattaact ttcttaaaac
     9061 ctcaataaaa cctacaactt tttggctaaa agaaagagaa aatgaacttt taaagcttga
     9121 taataaaaat gaaattacca atgaaaaaca agaaaaaaat aaatttcatg aaagagattt
     9181 acaccccttg cttgtaaaat ttttatatga aaatttagat tttaatttaa attgcaaaac
     9241 aatttatcac gaacaaagca aaaagggtaa gggcggggaa gataagtgga attatcctga
     9301 tattgtaggg gtttattttc cttacgatga ttatgaaaaa gagaccataa cacttttaga
     9361 aaatatcaaa caaaatagtt ataagctttt ttcttttgaa cttaaaattg ctttaaattt
     9421 ttcaaattta aaagaatgct attttcaagc tgtaagcaat tctagctggg caaatgaagg
     9481 ctatttggtt gttttacaag aaattgatag cgaagtttta agtgagttaa gacgcttaaa
     9541 tcaaagtttt ggcataggag tgataaaact tgaaaaagat atttcaaatt ctcaaatttt
     9601 aattagtgca aaagaaaaag aacttgatat tcaaacacta aatatgctga tcaataaaaa
     9661 tccaaatttt aaagaattta ttgatgatat aaacaaacaa attaaagtgg gcaaagaagc
     9721 aaaaattcaa gctaattttg atgaaattaa aagcgatgaa gaaatggaaa aatatcttaa
     9781 agaaaaatgt attttggaga aataaatgct tacaaaacgc ataattgcat gtttagatgt
     9841 caaagatggc agagtagtaa aaggaacaca atttaaaaac cataaagata tgggagatat
     9901 catagagctt gctaggtatt attctcaaaa tggtattgat gagcttgttt tttatgatat
     9961 tgctgcaagt gctagaaaag aacgcatatc aagagaatgg gtaagtgaag tagcaaaaaa
    10021 tatcaatatt tctttttgtg ttgcaggggg tattaaaagc gaagaagatg cagctgaact
    10081 tttggctaat ggggcagata aaatttctat caattctcct gctttaaatg atccaagcct
    10141 aatcacacgc cttgctaaaa gctttggcgt gcaatgcgta gtagtaggga ttgatagttt
    10201 taaagatgaa aatggaaatt taaaagtatt tcaatacaca ggggatgaaa aaacaagtaa
    10261 acatagtgga aaaagcactt tagaatgggt taaaaaagtg caagatctag gtgcaggcga
    10321 aattgtttta aatatgatga atcaagatgg tgttaaaaat ggctatgatt tagaacaatt
    10381 agaagctgta tataaaattt gtaaagtacc tttgatcgca agtgggggag cgggaaaaat
    10441 ggaacatttt ttagaagctt ttaaactagg tatagatggg gctttagctg cttctgtttt
    10501 tcatcaaaaa cttatagaca ttaaagaatt aaaaatttat cttaaaaatc aaggcttaag
    10561 tataaggata taatatgcaa aatttcaaag aacttaatga aaaaatcgct tggcaaaaag
    10621 tggataatct tttacctgtc atcatccaag atgcaaaaac ttgcgaagtt ttaatgctag
    10681 gctttatgaa taatgaagcc ttagaaaaaa gcttagaaag tggcaaagta gtcttttttt
    10741 cacgcacaaa acagcgtctt tggatgaagg gtgaagaaag tggaaatttc ttaaatatca
    10801 tagatttaag cttagattgt gataatgaca cgcttttaat tttagcaaat cctgtagggc
    10861 ctacttgtca tacgggcgat atttcttgtt ttgaaaaaat ttctaaaaat gcagattttg
    10921 tttttctagc cagacttgaa aaacttatta atgcacgcaa aaatgccgat gaaaatactt
    10981 cttatacagc aaaacttttc aaaagtggta caaaacgcat cgcacaaaaa gttggtgaag
    11041 aaggcgtaga aacagcttta gcagcgacag taaaagataa agaagagctt atttgtgaag
    11101 cagcggattt aatgtatcat ttaagtgttt tacttgcaga tgcaaatctt agtttctcag
    11161 atgtgatttc aaaattaaaa gaaagacata aagcttaaag ctttatgtaa aataaattta
    11221 tatcaatgca aggcttcatt aagtttgact gcttttttat ttaaagctac tatcatagca
    11281 ccacttatag aatcttgacg gaaatgtagc ccatttaaac ctttaagctc taagcctttg
    11341 taaatttctt tatcaaaatt aaaataagga ttaagtttag caagttcttc ggcatctttg
    11401 agtaaaaatt tcgttccttc tagcactgca atacctgcat caactataca attatcccct
    11461 aaaggaattc ctgtcactga attagcccct aaaagacaag ccttgcctac gcttatagca
    11521 ttgccacttg ttccacttaa aacacctaaa atcgaagctc cgccacctac atcagaacct
    11581 tctcctacta tagcacttga actaatacgc ccttcaacca tacaagctcc tgttgtacct
    11641 gcattaaaat tcacataact tgcccctggc atgatggttg ttcctgctgc taaagacgca
    11701 cccattctta ctttagaact ttctaaaatt cttgtattat cctcagggat aatatgtgct
    11761 aaaaatcttg ggaatttatc aacaaaatcg atttttggat attgattgct catttttaaa
    11821 cgcatttcat ttgctcttaa atactcaagc tcgataggct tatcatcact ccaagctaca
    11881 ttgcttaaaa gtccaaaagc tccatttaaa ttgatacttc ttaaaggtac ttttttagta
    11941 gaaagcaaat aaagttttag ataaatactt tctacactta aaggttcttt atcttcaaaa
    12001 agacaaacaa aagaaaattc atcgtcttta aatttatctt tgataatctt taataaatca
    12061 atattttgat gcccatcttc ttctaaaaaa ggtttaaaac aagaaagtgc aaaatcaata
    12121 tcttctaatt tcaaagtttg cacaaactca ctcgcattaa aatcaatctc cacgcccctt
    12181 tgcataaaag cttcaagcat gattgccgct gagccaaaat tttgctcata gttaatcaaa
    12241 gcaaaacttg cttgtaagat tttattttta tttaactgtc ctctatcaag ccttgctata
    12301 ccaaaagctt taggtttttt atagccactt ttttgctcga tttgtttgat taaaagtaaa
    12361 aaatcttctt tagtattaat cattttcttt tccttatcca cttaattttt aatgcgaaca
    12421 cgcacttttt ccattcatca caggttgtat agcagaatta tccgcaccac cttcattgtt
    12481 aatcttttct ataaaactcc aaattttttc agccgccatt aaataacgcc ttgaactcac
    12541 actttcaggg tgataaaaac tcacaggctt gccttcatct ccaccttctc ttactatcat
    12601 ttctatagga atttgtgcta aaacttcact tttataggct tttgccatat cttcagctgt
    12661 tcctttacca aaaatatcat actctttacc attatcagga cataaaaatc cactcatatt
    12721 ttcaatcaca cccgctatag gaatatgaag tttattaaac atatctaaag ctcttttgct
    12781 atcgtctaaa gatacggttt gaggcgtgct tacacaaact cctgcagtaa taggaatact
    12841 ttgcgcagaa gtaatttgtg catcgcctgt tcctggaggc atatctaaaa acaatacatc
    12901 aagttcaggc caaatcacat cagctaaaag ttgctcgatt gctttcataa tcatagctcc
    12961 acgccacata aggccttgac cctcttcgat caaaaccccc atactcatca tataaacacc
    13021 atgagttaaa ataggcttta atctctgccc tactacttca ggctgagttt tggtttcacc
    13081 tagcattctt ggaatatttg gcccataaat atccgcgtct aaaataccta ctctttttcc
    13141 cattttagcc atggaaattg ctaaatttac tgtagttgta gatttaccca caccaccttt
    13201 tccacttgaa accatgatga aattttttac ttgtggagcg atattttttc cacttcttga
    13261 attacttttt tcttcaggaa tttttggagt aatgatatta agttcaatat tttttaaagc
    13321 caaactcgat aaagcttcaa taatattttt acgaatttca ttagctactt caggatttgc
    13381 tgaaacgatt tctatatcaa tgaatacacc atcatcttga attttaatat cttttacaaa
    13441 gttaaaactc actatatcct tttcaaaacc aggatatttt acagttttta atttctctaa
    13501 aatttgttct ttcatatttt ttccttgtct tttaaaaaaa tcaattttac taataaaatg
    13561 ataaaattta gctttttata agtgtataat atggtaacat tataaaaacc aacaatatta
    13621 aaaagaggaa tgaaaaaatg agtgaaatga gcctcattat gttagcagct ggaaattcta
    13681 ctcgttttaa tacaaaggta aaaaaacaat ttttacgact tggaaatgac cctctttggc
    13741 tttatgcaac aaaaaattta agctcttttt atccttttaa aaaaatagtt gttacctcta
    13801 gtaatatcac ttatatgaaa aaatttacta aaaactatga attcatagaa ggtggtgata
    13861 ccagagcaga atccttaaaa aaagccttag agctcataga tagcgaattt gttatggtaa
    13921 gtgatgtagc aagggtattg gtgagtaaaa atttgtttga tcgtttgatt gaaaatttag
    13981 ataaagcaga ttgtattacc cctgctttaa aagttgcaga tacaacactt tttgacaatg
    14041 aagccttgca aagagaaaaa atcaaactca ttcaaacccc gcaaatttct aaaaccaaat
    14101 tgcttaaaaa agccttggat caaaacctag aatttacaga tgatagcaca gctatagctg
    14161 caatgggtgg aaaaatttgg tttgttgaag gtgaagaaaa tgcaagaaaa ctaaccttta
    14221 aagaagatct taaaaaactt gatttgccta cacctagctt tgaaattttt actggcaatg
    14281 gttttgatgt gcatgaattt ggagagaatc gccctttgct tttagcagga gtgcaaattc
    14341 atcctactat ggggcttaaa gcacacagcg atggagatgt tttggctcac tctttaaccg
    14401 atgcgatttt aggtgctgca ggacttggag atataggaga gctttatcct gatactgata
    14461 tgaaatttaa aaatgccaac tccatggagc ttttaaaaca agcttatgat aaagtcagag
    14521 aaataggttt tgaactcatt aatatagaca tttgcgtcat ggcacaaagc cctaaactta
    14581 aagactttaa acaagctatg caaagcaata tagctcatac tttagattta gatgaattta
    14641 gaatcaatgt taaagccaca acaacggaaa aattgggttt tattggaaga aaagaaggta
    14701 tggcggtgct tagtaatgta aatttaaaat attttgattg gacaagatta tgaaagtttt
    14761 aattattgaa aatgaaattt atctagcgca aagcattagc attaaactaa gtgatgctgg
    14821 atatagctgt gaaattatta actcgtttga tgaatacaat ggtgaaaaat actatgacat
    14881 tatactgctt tctacaaata ctaataattt tctaaaagcc gtaggtcagt ttaaacatag
    14941 tattattatt ttgcttattt cttatataag tacagataca gtttcaaatc ctttgaaatt
    15001 aggtgctagt gattatattc aaaaaccctt tatgatagaa gagctgatta gaaaaataaa
    15061 gcattatcag gattttagaa aactttcaat tcttaataaa gcttatcaaa gctatatcaa
    15121 atcaagatta gaaacaatca aaattccaga gtataattat aaaaaattaa aacttccatt
    15181 gatattaaaa tccaacaagc aaagcagtgc tgatgctttt gtttttaatt atgcaaatga
    15241 atgtgacatt actctttctt ttattgattt aacatctaca aattcagttg aaaaagttat
    15301 gaaacttccc acagaaaaca atctcttatt tttgagtaat tttcaagcat taaaagcaac
    15361 agaaaaggaa aaactcctag attttataca aaacaaaaat gttattttgc ataccaattc
    15421 aaatacagat gatttaaaaa taaactgcat taatttaaat gataatgaaa aaaatatcaa
    15481 tagcaatgaa attttaacta tagatgagta tgtaaaatat gttattataa attaccaaaa
    15541 tatatttcct gatactgatc tttcaaaaaa attaggcatt tcacgtaaat ctttatggga
    15601 aaaaaggaag aaatatgaaa tcagcaagaa aaaataaaaa cattaccata gatcaaaatg
    15661 aatttggcat cttgtcactt attaaagaag gtttgctagg tacttgcact catttaatga
    15721 atgaaaaaga agtcaatgaa atcattaaat caggaaaatt taaaggagaa agttttccct
    15781 atcccttaag ctttgcacca aaaaatgctg aagaagcact aaatgatata aaatctggcg
    15841 atagaatcga tctcatacta gatgaaaaag tagtaggaca tatagatttt aaaagccaat
    15901 ttaaaaataa taaaaatttt tctgatattt tcagtcctaa cacttgctct ttagaagaca
    15961 tgggaacaac ttgcataagt ggaaaaatag aaatttataa ttctcaaatt gaaaaaataa
    16021 aagaaaattt tcaacaaatc aaaaacaatc ttaatgcaca aaaaattact gctatagttt
    16081 caagttttga tcctttgcat cgtgcccatg aaagaatgtt tcgttggact attgataaag
    16141 cagatttagt tgtaattttt cttgtagaat cttttgatgt aaatgggttt gaattcgaac
    16201 ttaaagaagc atatttgaaa aaatttattc aaaactatct tccaccggat agaattttca
    16261 tttttccatt aaaaaatatt aatatttttc acgctcattt aaatcctggc ttagaaagta
    16321 ttatcgcaaa aagtctaggt tgtaccaaac tagtagtagg acaaaatcat acaggacttg
    16381 gaatgtttta tgacgataac caaccaaaaa ccatacttga tgatttttcc aaggactatg
    16441 gcatagaagt gatcgttttg cctgaatttg tattttgcga tcaatgtcgc atgattgtta
    16501 gcacaagatc ttgccctcat ggttgtcatc accatttgca ctataattct cagtctttaa
    16561 aagatttact aagagcgggt atcattcctc cagcaatttt catgcgcaag gaagtatcta
    16621 gtgttatttt aacttctctt tttccaaata gattaaaaaa tatgcaaaaa atttataatg
    16681 agctttttcc aactgatgga attttagaat acaaaaatga tgaagaattt tatcaaaaac
    16741 ttttagaaat tcatcaaatg tcttatatgg tgtaataaaa tgcaaaaatt atttttaact
    16801 tttttttatt caggttctgt aaaaaaggca agtgggactt ttggtactat cgctgcttta
    16861 atacctgctt tttttatact taaatatctc gggattaata ctttgttttt actaagcatt
    16921 ttaatttttg ttgcaagtat tcgtgttata gatgattatg aaaaaaaaac aggaattcac
    16981 gatgacaaac acatagttat cgatgaggtt gctggagttt ttcttgcttg tgctattgca
    17041 gcaagtgttg aaaactcgat agtcaatttt attttggctt ttgttttatt cagactcttt
    17101 gacattacaa aaccttctat tattggtaag atagataaaa aagtcaaagg cggactaggt
    17161 gtaatgcttg atgatatgtt agcaggattg tttgctggac ttttaagtgc ggtaatttat
    17221 ggatttttac ttaaatttaa tttagttttt tgggatataa atttaaaaga cttattttga
    17281 aattt
//
LOCUS       DAPIWV010000025        16969 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.026, whole genome shotgun sequence.
ACCESSION   DAPIWV010000025 DAPIWV010000000
VERSION     DAPIWV010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16969
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.026"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            155..1937
                     /locus_tag="RJ272_000581"
                     /pseudo
     CDS             155..1937
                     /locus_tag="RJ272_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
     gene            complement(1975..2913)
                     /gene="trxB"
                     /locus_tag="RJ272_000582"
     CDS             complement(1975..2913)
                     /gene="trxB"
                     /locus_tag="RJ272_000582"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDV7381698.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3047..3361)
                     /gene="trxA"
                     /locus_tag="RJ272_000583"
     CDS             complement(3047..3361)
                     /gene="trxA"
                     /locus_tag="RJ272_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDV7381699.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(3418..3756)
                     /locus_tag="RJ272_000584"
     CDS             complement(3418..3756)
                     /locus_tag="RJ272_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDV7381700.1"
                     /translation="MGLKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            complement(3756..5003)
                     /locus_tag="RJ272_000585"
     CDS             complement(3756..5003)
                     /locus_tag="RJ272_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HDV7381701.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENNKLIRARCGQSITPVIALSRSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFEQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(5007..6209)
                     /locus_tag="RJ272_000586"
     CDS             complement(5007..6209)
                     /locus_tag="RJ272_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HDV7381702.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVVIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYIVVNFPHNPTTVTCEKSFYERLITMAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            complement(6221..7027)
                     /locus_tag="RJ272_000587"
     CDS             complement(6221..7027)
                     /locus_tag="RJ272_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381703.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(7021..7959)
                     /locus_tag="RJ272_000588"
     CDS             complement(7021..7959)
                     /locus_tag="RJ272_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381704.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSVTVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(7952..8635)
                     /gene="rlmB"
                     /locus_tag="RJ272_000589"
     CDS             complement(7952..8635)
                     /gene="rlmB"
                     /locus_tag="RJ272_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDV7381705.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(8649..9473)
                     /gene="rsmI"
                     /locus_tag="RJ272_000590"
     CDS             complement(8649..9473)
                     /gene="rsmI"
                     /locus_tag="RJ272_000590"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDV7381706.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(9476..9676)
                     /gene="rpmE"
                     /locus_tag="RJ272_000591"
     CDS             complement(9476..9676)
                     /gene="rpmE"
                     /locus_tag="RJ272_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDV7381707.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(9755..10411)
                     /locus_tag="RJ272_000592"
     CDS             complement(9755..10411)
                     /locus_tag="RJ272_000592"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDV7381708.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(10413..10820)
                     /locus_tag="RJ272_000593"
     CDS             complement(10413..10820)
                     /locus_tag="RJ272_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381709.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(10820..11245)
                     /locus_tag="RJ272_000594"
     CDS             complement(10820..11245)
                     /locus_tag="RJ272_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7381710.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(11245..11826)
                     /locus_tag="RJ272_000595"
     CDS             complement(11245..11826)
                     /locus_tag="RJ272_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HDV7381711.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKVEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(11823..12566)
                     /locus_tag="RJ272_000596"
     CDS             complement(11823..12566)
                     /locus_tag="RJ272_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDV7381712.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIKFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(12569..13531)
                     /gene="moaA"
                     /locus_tag="RJ272_000597"
     CDS             complement(12569..13531)
                     /gene="moaA"
                     /locus_tag="RJ272_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDV7381713.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(13544..14059)
                     /locus_tag="RJ272_000598"
     CDS             complement(13544..14059)
                     /locus_tag="RJ272_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381714.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(14056..14553)
                     /locus_tag="RJ272_000599"
     CDS             complement(14056..14553)
                     /locus_tag="RJ272_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381715.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(14544..15428)
                     /locus_tag="RJ272_000600"
     CDS             complement(14544..15428)
                     /locus_tag="RJ272_000600"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HDV7381716.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            15499..16368
                     /gene="miaA"
                     /locus_tag="RJ272_000601"
     CDS             15499..16368
                     /gene="miaA"
                     /locus_tag="RJ272_000601"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDV7381717.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIQTRTKEMLDNGLLDEAKILFSKFD
                     YKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(16354..16917)
                     /locus_tag="RJ272_000602"
     CDS             complement(16354..16917)
                     /locus_tag="RJ272_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HDV7381718.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNINLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         5833 a         2703 c         2236 g         6197 t
ORIGIN      
        1 ttaagaagaa gaggttttaa ttagtcattt atacctagtg aaaaactagg tataaatttt
       61 ttcttcaatt taaatttttc atcaaagttt ctaaaaagtt tccaaatatt tttatacttc
      121 cattgtttta aatttcaata tggggtaaaa acaaatggaa agaagattgt ttttaaaagg
      181 ttcagcttta ggttctatgg tggctttttt tgcaagttca aatttaagtg ctgctatgct
      241 taaggataag gatttgctag gttttaaagc tgttagtgca agcacacaag ataaagttat
      301 agtaccacaa ggttatgaag caaaggtttt aatttcttgg ggtgatccac tttttagtaa
      361 agcaaaacct tatgatgaaa ataaaatcat cgacatgaat gcagttaaaa atgctcattt
      421 ggtttttgga gatgacaatg atggtatgag tttttttcca ctttcaaaaa acagaggaat
      481 tttagccgtt aataatgaat atataaatcc tgaaatcatg tttaatcatc atggtaaaaa
      541 tttaagcaaa gaagatattt tatatgagca agccagtggt gggtgtgagt atcttagaaa
      601 tcgaaaaaaa aggtgatgat tggactgtgg ttttagactc taagtataac cgcagaatcg
      661 atgcaaacac taaaatgcaa gtaagtggag cagctaaaaa agaagtttta aaaaatgaaa
      721 aatttgttca tggaactttt gcaaattgtg caaatggaca aacaccttgg ggaacttata
      781 tcacctgtga agaaaatttt gatgattttt ttggaagttt agatgaaaat ctagaattta
      841 atgactctct taaacgctat ggatttaaca aaactagtct ttatggatgg gaaaaatttg
      901 atgaaagatt tgatttagct aaaaatatgg atgaagccaa tcgttttggt tggatagtgg
      961 aaatcaatcc ttttgatgca caaagcacac ctgttaaaag aacttcttta gggcgtttta
     1021 aacatgaaaa tgcagaaatt atcgtagaaa aagatggttc tgttatagtt tatatgggtg
     1081 atgatgagat gaatgaattt atttataaat ttgttagcaa acataaatac aaaaaaggtg
     1141 ctgatacaag taaaatttta gatgaaggta ttttgtatgt aggacagttt aatggcaatg
     1201 tgggagattt taaaggacag ggaaaatgga tagctttaga atatggcaaa aacagcttaa
     1261 atgaaaaaaa tggttttaag tctcaagctc aagtactcat caatacgcgt cttgctgcaa
     1321 gtattgtagg tgcaactcct atggatagat gtgaatggat agcaagccat aaacaaagtg
     1381 gttctaaaga agtatttgca acactaacga acaacaaaaa tcgccaagaa cctaatgcag
     1441 caaatccaag gactaaaaat gtttatggac aaattttaaa atggatgcca aaaaattctc
     1501 ataaagacga tgattttact tgggaaattt ttgctcttgc tggaaatcct gataaccaac
     1561 aaggcttata taaaggctca aataatatta caagtgaaaa taaatttaat tctcctgatg
     1621 gacttaaatt tgatagagat ggaagacttt ggatacaaac agatggatct tattctaata
     1681 aagatgaata tgaaagtatg ggaaataact gcatgctagc agcaaatcca aaaacagggg
     1741 aaattagacg ctttttaaca gggcctattg cttgtgaatt aacagggatt gcttttagtg
     1801 aggattatac tacaatgttt gtaggcatac aacatccagg agaaggtttg aaaggtagta
     1861 cttttcctta tggaaaaaca ccaagatcaa gtgtaatgat gataagaaaa cttgatggtg
     1921 gagtgatagg aagctaaata aaaataaagt tgcttttagc aactttataa aatcttaatg
     1981 caagctttct atataagcca tagcacttaa tgcagctaca gctccatcac ctgcagcaca
     2041 aataacttgc ttaggcgcat cttttctaag gtcccctgcg gcaaaaagtc cagcaacgct
     2101 agtttgcatt ttaagatcaa cacttacttg cccaccttct tccatattgc ataaaaactt
     2161 actatcgtct tgttttaaaa tttcatttct tacgttaaga ccaacaaaag taaaaattcc
     2221 tggaacattt aaatctctaa tactaccatc ttttaatttt acttttactc cagcaacacc
     2281 cattttatcg ccatatactt catctacact tgcgctagta atgagttcta ttttttcgtt
     2341 tttcttaact ttttctactg tagatggagc tgctctaaac tcatctctgc ggtggataag
     2401 ataaatctta gaacaaatat ttgctagata taaagcttct tctaaagccg tatctccacc
     2461 acctaaaact gcaacttctt tatttttata aaaaaatcca tcacaagttg cacaagtgct
     2521 tacacctttt ccaaaaaatt catcttcgcc cttaaaacct gctttttttg gagctgagcc
     2581 tgtacaaact atcacagctt tagcaagttc tgttttacca ccttctaatt tgatggtaaa
     2641 acttccatca ctatttttta aaatttgttc tactccaacc atttcatgtt ttaaaccaaa
     2701 acgcatacat tgttcactcc aaggagccat aaaagaaatt ccatccataa cttgggctac
     2761 acctggataa ttttctatct cagaacttga ggtaatttgt ccaccaggca tacctttttc
     2821 aaacattact acattcttaa gaccacctct agttgcataa agtccagcac taagtccagc
     2881 aggacctcca cctatgattg ctacatctaa catttatatt tcctttatat tgaattttat
     2941 tattaataat gatataaaaa ttattcttaa tagtagttaa taaaaattat tatttagtat
     3001 aaatttgaaa tttttaagaa gaaggctagt tatactagcc tttagtttat agtaaagagt
     3061 ttagtttatc actaattgct tgtttagatt gtgcaccaac gagttgatct acaacttcac
     3121 catttttaaa gaaaataagt gtaggaatag agcgaacacc aaattcagct gctaaatcac
     3181 cttgttcatc tgtatttact ttgcaaattt tagctttacc atcgaagtca tttgcaagtt
     3241 catcaataac cggagcaagc attctacaag gtccgcacca tggagcccaa aaatcaacta
     3301 aagctacacc ttcttttgct tgagcaaaat tatcacttgt taattcaata tattttccca
     3361 taatttttcc tttctttaat ttttgtctaa ttgtatttta tttttttaaa tatcagctta
     3421 aaaacttata ttttcgcaaa attgtatcac atcattttta atgcaaatca gatcaatctg
     3481 aaaatccgat gaaattccat ttttaagatg ataaaattct atagttttta aaattttttc
     3541 aagttttttt ctatccaaac gctcggaaac ttcataatca ttttgagtaa atttaacctc
     3601 tataaaatgt aaaatttcat cttttttggc tattatatcg atttctccaa atttagaatg
     3661 gaaatttctt tttaaaattt caaagccctg tttttttaaa aatttacaag ccttatcttc
     3721 acctaaaatt ccatctaaat aagcttttaa acccattatt ctatacgcat cataaaaggt
     3781 ttggttttta taaaatcttg tttgcgtaaa atttcaagca aattttgtat gcttttttca
     3841 taagttaaat gcgtagtaaa aaacaaagta ctgtaatttt catcattttt tttaggtttt
     3901 tgtaagaaac tatcgataga aatattattt tcactcatca attgtgtgat tttagataaa
     3961 acccctattt tatcttcaac tttcaccctt aaataatatt ttgtataaat ttcatctttg
     4021 cttaaaagct cgtattctaa agtgttcaca aaaccaagca ttggtgcttt tacctgatct
     4081 cttgctatat ccataagatc tgaaatcaca gcacttgcag tggcctctcc tcctgctcct
     4141 gctccataat acaaactttc acccaacaaa tctccattaa tgcttatagc attcatcact
     4201 ccatcaactt ttgcaagcat tttttcttta tctatcatag taggatgcac tcttaattct
     4261 actttatttt cacgcacctt agctatacct aaaagtttta tagtaaattc aaactcatta
     4321 gcaaaataca tatcttcagg cgcaatttcg ctaataccct cgatcaaaat atcttcaggt
     4381 ttagctttaa gattataagc gatacttgat aaaacaagca gtttatgtgc tgcatcttgc
     4441 ccttctatat caaaagttgg atcagcttct gcataaccta aattttgagc tatttgcaaa
     4501 gcttgttcaa aactcatatt tttttgactc atagaactta aaatataatt actcgtacca
     4561 tttaaaatcc cttttatagc caaaatatta tttgcactta aaccttcttt taaaaccttt
     4621 ataataggaa ttcctccagc cacacttgct tcataaccaa aggctaaatt tttagccaaa
     4681 ttttcaagtt cataacgatg ataagcaagc atagctttat ttgcagtaac aacagctttt
     4741 ttctttttta aaatttcact cactatttta aaagcttcat ccaccccacc cattaattct
     4801 acaaaaacat ctacatcagc atttaaaatt tctgcaacgc tatgagtaat tggaattaaa
     4861 gcattttttt taggacttct agaaagagcg atcacaggag ttatgctttg accgcacctt
     4921 gcacgaatga gtttattatt ttctaaaaga aatttaacca cagcacttcc aacagtgcca
     4981 taaccaagaa tcgctacttt cataacttac tcttttaaat attttttgat attgcgtgca
     5041 gcttggcgta tgcgattttc attttcaatt aaagcaattc ttacatactc atcacctgct
     5101 tcgccaaaac ctaccccagg acttactgca acactggcac gctgtaaaag ttgctttgaa
     5161 aattctaaac tttttaaatg tcttttgctt tcagggagtt ttgcccaaac aaacatactt
     5221 gctcttggtt tttgaagttt ccagcctgca ttttcaaaag cttcaagtaa aatgtgcatt
     5281 cttttatcat aagttgcacg gatttcatcc acacaagttt gatctccatc taaagctatg
     5341 gtagctgcta cttgaatagg tgtgtacata ccataatcaa accaagattt tattttttta
     5401 agcgcactga ctaagcgttt atttcctact acaaaaccca cacgccagcc tgccatattg
     5461 taagattttg aaagagtgta agtttctacc gctacatctt ttgcgccttc aatttccaaa
     5521 atagaaggag ttttatagtc atcataagtt aaatctgcat aagcaatatc tgaaataata
     5581 taaaatcttt ctttttttgc cattgttatc aatctttcat aaaaactttt ctcacaagtt
     5641 actgttgttg gattatgcgg gaaattaaca acgatatatt ttggacgcgg gatgctttca
     5701 tttaaagttt tatgcaaatt ttcaaaaaat tgattttcat caagctcaaa tttttcatta
     5761 taagctaaag gcatttttgc tacattacct cctgctataa taaaagcttg agtatgtata
     5821 ggataagcag gagttggcac aataacaaca tctccaggat ttataatcgc tcttgcaaga
     5881 tttacaaaac cctcttttga acccatggta gctacaactt cattttcagg atctaggttg
     5941 acattatatt ttcttttata ccaattacaa attgctaagc gaagtttata aatccccatg
     6001 gaagtagaat atcccgaggt tttatctttg ttagcacttt cacaaagttt atctataatg
     6061 tgttgtggag ttttaccatc gggatttccc attgaaaagt cgatgatatc ctctccagca
     6121 cgtcttgctg ccatttttat cgcatttacc tctgcgaaaa cataatttgg aagtctttct
     6181 atggtattaa aacggatttc atcaaacatt tcttaatcct ttatttttta agtgtgattt
     6241 ttaaacccct gcgtatatta tctaaactat acatatcgct tacaatagca tatatagcac
     6301 catttggaat aagttctgaa aaatgattat ttttattttc gctttttact gctttaatta
     6361 gatttagatt tttatctaaa aagaagattt taggaaacca attgtctaaa tcatttgcat
     6421 caataatcaa atttgtagca ttttttaaat caagcacata gtctttaagg ggcttttcta
     6481 atgattttgg agtatttaaa ttaacatttg tattggtttt taatacagca ttggaaaaat
     6541 ttaaatcata ttcatagtca tatgccccaa tgcgcttaat attatctata tagacagaat
     6601 tttcttttaa gagattgtaa agcgttccag gatctaaaac atattgagat tctacttgta
     6661 tagtatagtc aatatttcct tctcttaaaa tcaaatctgt agggataaaa tatatatatc
     6721 cagcatctgt taaaacatcg gataaaattt taaaaaacat aacttcatca gcttttgctt
     6781 taaaatttag tcttagactt tgaggatttg atagtgttaa ggcaattaaa gaattggttt
     6841 ttaatatttg agatattttt gcaatatcac aatttccatt attatctatg taagaattat
     6901 ttgaaaataa taattctagt tgagaatttt tactaggatt gtttactaaa ttttttgcta
     6961 attcaagact tgagattgca aaagatatat taacccaaag agtaagaata ataatttttt
     7021 ttaccattct ttacctttat ttaattttac aaattcagca gctgaaatac ttgtaatttt
     7081 tccatcttta atcaagaaac gttttgaaat tcctgcagga aatttttgtt ctttattttc
     7141 ttgatcaaac attgttaaag ctgcagcccc tgttaaaatt aactgatctt tatctaaaga
     7201 aatattaaaa tctttttctt taacaaagct tgttttttta agacttttta aatctattaa
     7261 acctatccaa atcttggtag aggttttaaa atgtgcttct tttaaagaat cagtttttgg
     7321 tgtatttgtg tcttcttgaa tttgggtatt tttttcttca tcgagtaggg ttgtgttatt
     7381 ttcactgata ttattttcta tgcttatgtt tttatcattt tcttgtaatg agatgttttg
     7441 gcttggtaaa acgctctctg tttgatttgt ttcttgtgct ttattgttgt ctataacaac
     7501 aacattgttt ccacctaaag attttaaatt ttcttgtgct tgtcctatga tatctataac
     7561 tgttacgcta gtattatttt gttcatcttt gaaaaaagtt ttaagtgtat caaaataata
     7621 aattccactt cctataatca ctaaaacaat aagaacaatc aaaaaaggcc aagtgttaaa
     7681 ggatttttga ctataagcat ctagttttgg ggttatcatt tttgattttg tttgtggagt
     7741 aggattgttt tcgttaagat aagcttcata ctcttcgtta aaatcactaa agtcgagttc
     7801 gtattctctg ctcaaaattt taacaaaacc tttaacatta aaacgactta aaacagcaaa
     7861 attcttttct actaaagctt caagaaaatc aagttcaatt tgcgtttttg ctgcaacttc
     7921 ttttaaattt aattcttgta tttttttcca attaagcatt taacatccta tcacaaagta
     7981 ttgcaaaagc agcgctgaca ttaagactat caaaattatt tttcatcgca atgcccacac
     8041 attcatcgca tttttttaca attttagagc ttaaaccaaa accctcacta cccaaaacta
     8101 aaactttttt accattgttt atttttacac tgtgaatttc ttttcccgag ccatcactcg
     8161 cataaaaata aaaacctact tgttttagtt catttattac acttaaagca tcgttgctta
     8221 tcacaatagg taaatcaaga gccgctccgc tgcttgtgcg aattactcct tccatggcta
     8281 atttttcacc aataaaaatt aaagccccaa cccctaaagc ataagctgta cgcgtgatag
     8341 cccctatatt tcctacatca ctaattccat aaagcataac aataaaatca ttttttttga
     8401 tctcatttaa atttgcaaaa gaactttctt taatatctag caaaaaacct tgatgatttc
     8461 cacctttcgc ataagcttga gcagttttaa aatcaagttt tttgatttta aaacctgatt
     8521 ttgcgatttt ggaaaaagta attttatcac attcttttgc taaataaagc tcattgatac
     8581 agtctttatg atattctaaa atataaaaaa atatttgctt cccataaact atcatattaa
     8641 aattttacct aatcttgact taaaagcagt ttttgataaa tttcttttgc attttttcca
     8701 ttgatctttg ataataattt tgcttttgct tttaaagaca gctctaaatc cataatatct
     8761 ttttcacaaa gagtattttg caaaaaattt tgctcttttg attgcagtac tacaacccat
     8821 tcaccgttta aattagactt ttttaaaatt tcagaaagct ctttagcatt gcctttaaat
     8881 tttttttcaa attttttact gatttcttta atcaaaaaaa tttctctttg gctgtctaga
     8941 atcataatct gttctactaa agataaaata cgcttggggg attcgtaaat aatacttgga
     9001 taaggaaagt ttaaaatttt ttctatatct ttttgtcttt ctttgccttt atttgctaaa
     9061 aaaccaataa agataaattc tttttgacaa aatgctgagc ttacaagagc aactaaggct
     9121 gcatttgcac ctggtaaaat ttcataggtg atattatttt cttgtgcaaa ttctaccaaa
     9181 gccttgccag gatcactaat ccctggcatt cctgcatcgc ttaaataagc tacatttttt
     9241 tcaaatatct ttaaatcaat acttgctaaa acttcttttt cattatggga gtgtaaggct
     9301 ataaatttag aaatatgtat atcagtgtga aatttggtat ttaataacga aatcaaagac
     9361 ttacttactc ttgtatcttc gcaaaacaca agatcgcaag tctttaaaag ttctaaggct
     9421 ctaaaagaaa tatcgcttaa atttcctatg ggagtaggaa taaaataaag cataattatt
     9481 gcattgcgta ttttttctta aatttctcta cacgacctgc agcatctaca attttttcac
     9541 tgcctgtaaa aaaaggatgg caatttgaac aaatatctac tcttaattct gctttgtttg
     9601 actttgttgt aaaagtattt ccacaagcac aacttacttt gcattctaca tattctgggt
     9661 gaatttcttt tttcattagt tttccttaaa aattaaaaca ataagccgtg attataaatt
     9721 atttaacata aaaaagagat taatttaaga aaagttaaag caaaattttt gaagctatag
     9781 ctataatagc tgtttgactt tttagaatat tagagctttt aagagagatt ttccggttaa
     9841 acaataatct ctcatcattg ttaaatccac cttcaggacc tataaaatat aattcttttt
     9901 catcgaaatg actttgttgt tctccttgaa aatcaaccat aattgcattt ggaaattttt
     9961 gaacaaattc ttgagtgctt tggtggataa ttaaatccat tttagtattt ctaccgcatt
    10021 gttcacaaga agaaataatg attttttcaa atctttctaa atcgatttta aaatttcttt
    10081 gtgaaaaatt tgtaaaaacc aaatgtaact tttttactcc aagttcattt aagaaaggta
    10141 gagttttttc taaaatttta atatctataa tggctaaggc taagtttaat tcactttgtt
    10201 ttatattttg tgattttttg tttaaaaatt ttaaagtgca agaatttctt gttaaatttg
    10261 tgattgtata gttgtaaaga aaattatctt gtaaatttct aagatttagc tccgaatttt
    10321 cctttactct tcttactttt aaatggttaa agttttcacc ttgaagttgt ataaactctt
    10381 ctccagcttg cttgttatac aaaaattgca ttttatagat atctttctat taaaaaaggc
    10441 aaaaacaata aaaaaatttc aaaaggtaaa atcaaacaac taatccatct aaaagtggca
    10501 tattttctaa atcttcttgc ttttttaaaa caaacaaagt gaaaaattgc taaggcaaaa
    10561 attaagatcc aagaaaaaat cattacccag atattgacat tcatttgaaa ttgtttcatt
    10621 gctgataaca aacaacctgt aaaaataatc aaagctaaaa ataaataata aattggtaaa
    10681 aataatcgta ttctgcgaat aaaaatgaat tcggttttaa aatttccttg tgttagtata
    10741 agataaaaaa gcattaaaaa accgctcgca taaagactat aaagatgtaa agctaaaaag
    10801 aattcgtaac tttgatccat tattttcctt tgtttataaa atcagctaaa ttttgaattt
    10861 gttcatcact taaaaaacta tggtttttat cttttatcgt ttttattttt tgtataaaaa
    10921 ttttattgct caaggtttta atggccgtgc tgtttttagg ttttaattcc cctttttctc
    10981 catgacaagt ggcgcatttt tgtttatata aagagttgat aatactagga ttgacttcat
    11041 gttcatcatc tgaactttgt gcttcatcat ctacaggtaa aggcaggttg gagtcactta
    11101 attctgtttt ttcatcgttt tgttctattt ggactacttc ttgatctgta ttttgagtct
    11161 tagaaatatt tttttcatca ttagaacagg cagataaaac taataaaaaa aaacttaagg
    11221 caattaaaat tttagctttt tgcattaaat ctcctttgga tttataaaaa tttcttcatt
    11281 ttttaatttg ttataaaaat ctatatcatt ccattctact ttaatgccat tggaaaattc
    11341 tatgtcttga agtgaaattt ttggcattag ctcactatag gcatcttctc taaaaccttg
    11401 tgcatagcct gttcttgttt catgaacaat gatactttgt aaagtcactc cttgttctcc
    11461 atttaccatt tttgtttgtt ttaataaagc atctataagt atgaaaaata cacgacaaaa
    11521 attttcagca cttacattaa caggcaggca aatccaacga cttgaatatt ttttcatttc
    11581 ttctaaatat tttgcgtcat catatttaaa aagagttata gcatgatcaa aactatcaat
    11641 aatttggcgt atataggttt ttaaaagtcc aaaatcatag accattccag cattatctaa
    11701 atatttgctt tcaagtaaaa cttcaacttt gtaagaatgt ccatgaatgc tacttttgca
    11761 acgcttagaa gaacaaaatc taacaatgtg tgcgttttca aattcaaata attttcttat
    11821 aatcatacac cctctttatc gttccaaaga cgaatatgaa ttctatcaga ataattataa
    11881 ccattcttaa tacaaaattc agcaattttt tgagcatttt ttttaaggtt ttgctcattt
    11941 tcacccatag gcatacaaaa aatttgattt ggagcttctt ttagaatttc attgatttct
    12001 aaaaatgaat tatcaagggt attggcatct aaaacaaatt tataaaaact atcttttgcg
    12061 taatttttaa atgcttttaa agctttaaaa tttaatcgtt tatctttttt tatcccacta
    12121 ttttggagtt taacgcttaa agcaaaaata cattctttgt aaaaaggata tctatcaaaa
    12181 tcaatttcta tacttccatt gctttcaaag tgtatttcaa atttattttt taataacatt
    12241 tggataaatt ttataaattc aggattttca taatggatta atggctctcc acctgtgata
    12301 acaactatag gatcaaagtc ttgttttaat tttatcactc tttttaaaag ttcattagca
    12361 tttaaagttt cataactttc tttaaaatct tttgtgaaaa cagctcttat cgtgtcacat
    12421 ccaatgagag ttttatcgtt ttttgatatt tttacattaa aacctaaaca gttgaaattg
    12481 caaccagcaa aacgcataaa aatagctaat tttccattat atttgccttc tccttgaatg
    12541 cttaagaaac tttcaacaag ttgcaaaatt aacctccagt ttgataaaaa gcacgagatg
    12601 aggtttcatt atcaacaaca ctccatttat ttttttctgg tttatttctt aatacttctt
    12661 gtaatatttc tacagcggct ttaatatcac cttttcgaac cgcttctttt atgcttaatg
    12721 cttcatcaaa ataaaggcaa ggtattaaca agccttcagc acttaagcgt atgcgattgc
    12781 aagaatcgca aaattcatgg ctatgaggat ctataattcc aaattcataa tcatctgcct
    12841 tgtaaatact cacaggtgct ttttcatctt tttttataag ttgaatttga tatttttgac
    12901 tcaaaatttg tataatttca tctcttttta atccttgtaa tttaccataa gcatgagtat
    12961 tttccataaa ttctataaag cgaatttgag ctttttttga ttttgcaaat tccaaaagag
    13021 atatcagttc atcatcgttt aaatttttaa gagctacagt attaagtttt actttcaaat
    13081 ctagatttaa agcttcatca attccagata aaacactatc taatacatct ttttgcgcaa
    13141 gagtttttgc ttttttgtga tctagggtat caagtgaaat attaagtcgt ttaagtccag
    13201 cattttttag gtctttagca aagtctttta gtaaaaatcc atttgtagtt atagcaaggt
    13261 caatatcgct tttataatcg ctaatcattt ttataaaaat acttaaatct tttcttaata
    13321 aaggttcccc acctgttata cggatttttt caattccttc gtctatagct gctttaacaa
    13381 ataaaaaaag ttcttcaaag cttaataaat tttcttttgg ctgataatcg aaaggaattt
    13441 ttggcataca ataaaggcag cgaaagttac atctttgtgt aactgaaatt ctaagataat
    13501 ttatctttct accgaattga tctataagca tttattttcc attctatttt attaatttct
    13561 taaattttaa gacaagttct acatttccag tgccaatgcg taaatcttta gcgatttgtt
    13621 ctatgctttt tccttctttg aaaagatttt ctattttttg ttcttctgta tcgtaatttg
    13681 gtgtaagttt agccatgctt tgtgcttttt gttccaaatt taaaagacga ttttgttgtt
    13741 cattttgaaa atcttctatg atatgttcca tagtttttag tgttcttaaa acaggagtga
    13801 tttttgaact gatttgttta tcaagttcaa tcataatttc ttcttttaaa agagaggttt
    13861 tatagtcttc atcctcttcg ctatcatctt taactcctaa ttctttacga aaataatgaa
    13921 gttctttggt aatatcttct atcacatttt gaagttttgc tatttttgca ttattttctc
    13981 tttctttgat attcatgtag gctagcattg caattaaaag cacaattata aaaactaaat
    14041 aaagtacatc atcactcatt cttggccttt cttatttctt atcatatttc tttggatttc
    14101 aacaacaaaa gcatcaaaag ccattttgtc ttcaggctta attttgataa tttttgccaa
    14161 tgtttgactt tgagctttga taaaaatagc tattttttga ttatttaaat caaatcttaa
    14221 ataatattct ttatcttctt ctaaaatagt atccaaaaaa tttagatact caaaatttaa
    14281 agattctatt accccttttt gcttaagtgg tataagttct ttatttttat ctaaagaatt
    14341 ttcaagcctt aaaatatctt cttttagact taaaagaaga tcaaaaataa ttttttcacc
    14401 ctcgtcaaaa tcaatgcgta aagcaagttt tttccatttt aaaatttgag aaattgctcc
    14461 aagttttagg tattctccaa gaaaacggtt attttctatt tcacaacatt ctaaatgagc
    14521 ttcaaatcct gctttaaaaa gtgctaattc cataataaat caatccaaat aaaaataaaa
    14581 aagataatac ttaaataacc atttagagta aaaaatgctc tatcaatatg agcaaaattc
    14641 ttgtgaacaa ttttatgttc caaggctaaa ataataccgc ttataattac cccaataagt
    14701 gctatttttc caagtgctac accccaaact tcccacacaa aaagaagcca aaataatacc
    14761 gctaaaatat ggcaaaaagc tgatataaat aaagtagcct ttgaaccaaa tttagcagga
    14821 atagagtgaa gtcctatttt tttatcatac tccatatctt gtaaagaata aagcagatca
    14881 aacccagctg tccaaaaagt tacacctaaa cataaaataa cgctataaat gtgaatttca
    14941 cccataatta taacacttcc tgcaataggc gcaagtccta aacaaaatcc taaaactaaa
    15001 tgtgctaaag aactaaagcg cttaaaagct gaataaatag ccaataccaa aagcacagga
    15061 aaagacaaat aaaaggccaa agtattaata aaataagaac atgatataaa aataagtgca
    15121 ttaataatga taaaaatcca tacgcttttt ctacctattt ttccactgac attagggcga
    15181 tttgcacaac gaggattatc cttatctata tcttcatcca ttaaacgatt tgtagccatg
    15241 gcaaaatttc ttgcacttac cgcacaaata atgcctaaaa tcaacgcctt aaaaccaaac
    15301 caagcagtgt catttgcaag ttttgatgct acaatcatag aggaaaataa aaaaggcaaa
    15361 gcaaaaatag aatgcttaaa tactacaagt tctaaaatat ctttaaattt tatccagaat
    15421 gtgttcattt ttctacttta aaatattttt tgctatgatt ttactaaaat ttttataaat
    15481 tttaggataa atattaaaat gttttttgaa atagcattaa taggaacaac cgcgagtgga
    15541 aaaacataca tagccaatac tttagcaaga gaatttaatg ctgttgtttt aagtcttgat
    15601 agtctttgtg tttataaaga gattaatata gcaagtgcca agccttcaca agatgatctt
    15661 gcgagtataa aatactttgg ggtaaattta ttgagcgtga atgaacattt taatgttgag
    15721 ttattcataa gagaatatca aaaagcaaaa gaatttgctt tagctagaaa tttacctcta
    15781 attatagtag gtggaactgg attttattta aaaactatga tagatggttt aagtgaaaaa
    15841 accttagagt caaagagttc tttaaataac gatgaaattt atgctctttt attaaatatt
    15901 gatccaaact ataaaataga aaaaaatgat acttatagat taaaaaaatg gctgggtatt
    15961 tatgaacaaa caagagaaat tcctagtgaa tttttaaaaa gaacacaaaa aactggggtg
    16021 cttaaagata tagaaattta tgagcttgcg tgggataaag aaattttaaa aaaacgtatt
    16081 caaactagaa caaaagaaat gcttgataat ggacttttag atgaagcaaa aattcttttt
    16141 tctaaatttg attataaact taaagcatta aattctatag gtttgaaaga gtgtaaagaa
    16201 tatttagatg gagaaatttc ctttaaagag cttgaaaatt taatcacgat acatactaca
    16261 caacttgcca aaagacaaag aacttttaat aaaaaatttc aaagtaaagc cttggaattt
    16321 gataaagctt tagctacttt aagaatgaaa ttttcaatcg aaaaataaat gttctattag
    16381 aatttttact cctagtataa ttaaaaccaa tccgcctaaa agttcagctt tatttttaag
    16441 ataaattcca aatttattcc ctatttttag agcaatgata cataaaatga aggtgataat
    16501 acctattaaa aatatagcta ataatagatt tatatttaaa aatgcaaaac tcacaccaac
    16561 tgctagtgca tcgatactcg tagcaattgc taaagctagc atggttttaa agccaaattg
    16621 attggcatta ctatcgcaat tttcattttc caatgactct ttgatcattt ttaatcctat
    16681 taaagaaagt aaaataaaag ctatccaatg atcaatactc gcaataaaag atgcaaaagt
    16741 tatgcctata aaataaccaa tagttggcat caaagcttga aatccaccaa aataaattcc
    16801 aacaataaga taatgtttta aatgtagttt tttaacacta aaacctttgc atagtgatac
    16861 agcaaaagca tccattccta aagcacagga taaaaaaata agactataaa aatccataat
    16921 aaatcctaaa attttataaa aaattgaaga tgaaattata attaaacaa
//
LOCUS       DAPIWV010000026        16882 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.027, whole genome shotgun sequence.
ACCESSION   DAPIWV010000026 DAPIWV010000000
VERSION     DAPIWV010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16882
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.027"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..613)
                     /locus_tag="RJ272_000603"
     CDS             complement(<1..613)
                     /locus_tag="RJ272_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDV7381719.1"
                     /translation="MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISST
                     KSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMEL
                     SNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKD
                     IDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN"
     gene            complement(610..987)
                     /locus_tag="RJ272_000604"
     CDS             complement(610..987)
                     /locus_tag="RJ272_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vapd"
                     /protein_id="HDV7381720.1"
                     /translation="MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQ
                     YSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKD
                     FHQKLKEFTEKTPKNQKLKDLER"
     gene            complement(978..1301)
                     /locus_tag="RJ272_000605"
     CDS             complement(978..1301)
                     /locus_tag="RJ272_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381721.1"
                     /translation="MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKI
                     NKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEG
                     EGIWE"
     gene            1472..1735
                     /locus_tag="RJ272_000606"
     CDS             1472..1735
                     /locus_tag="RJ272_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HDV7381722.1"
                     /translation="MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLL
                     TIALMWCASRIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT"
     gene            1754..4522
                     /locus_tag="RJ272_000607"
     CDS             1754..4522
                     /locus_tag="RJ272_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB4 family type IV secretion/conjugal transfer
                     ATPase"
                     /protein_id="HDV7381723.1"
                     /translation="MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLV
                     GFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSN
                     FPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDI
                     KNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLR
                     KNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPK
                     RLKTYSKDDKTYSKQLEFYNYLFGGKFNPIRVLSSPIDQYLNGNLQNIQFGHDTIQFN
                     QNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTITQSFSPIPRVDAKSAISKQK
                     KQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTK
                     MNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKN
                     CWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIV
                     DQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNP
                     FMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISL
                     LLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDD
                     KDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFL
                     RLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNP
                     VKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLE
                     LKEIYKNS"
     gene            4533..5090
                     /locus_tag="RJ272_000608"
     CDS             4533..5090
                     /locus_tag="RJ272_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDV7381724.1"
                     /translation="MSNKAIINKQEVQFGTKGNQIFCTSLDVAKVFDKEHKNILRDIE
                     NILNDLREIGDLQCKLNFELSFKVRKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKE
                     ALQWKILFIDAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYS
                     KEAKNVFSLNYLVDNRTPKDPKKLQ"
     gene            5087..5752
                     /locus_tag="RJ272_000609"
     CDS             5087..5752
                     /locus_tag="RJ272_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381725.1"
                     /translation="MSDKELQKEILALENDVKQLEATIDVIKQRITHLKDIAWDRQSK
                     KESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMDKEIKKHLDNPNLRGMVTTQEMLSF
                     PKVAKGVEANNEARGYTWQVKANDGNTLVYGSRKYETNNEKIHRLATSHSKTEKNERQ
                     AEVGGRSHPHHPIFNDFNFRKSAENIISQQNKSTNDFKAKLEEFSTKKTNAIESINKE
                     FKR"
     gene            5786..6211
                     /locus_tag="RJ272_000610"
     CDS             5786..6211
                     /locus_tag="RJ272_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7381726.1"
                     /translation="MNNVNLIGYLGKDFEVGTTNSGRVYAKNSLAITKRWKNERGNEE
                     SSTTWIPIVLFGKSAESASTHIKKGSQFACSGELSSNQYQDEDGNTRTMLTVIVSKFY
                     WLGKKDKDDNGTQNPQVPPKEPNIDYENTNIESEETQVF"
     gene            6233..6502
                     /locus_tag="RJ272_000611"
     CDS             6233..6502
                     /locus_tag="RJ272_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381727.1"
                     /translation="MKNLSVEELAQELETSNHEKLIKALFLFEKNSSMEDLNSDQIEI
                     ILDEVYEFYINHKSISSFLQEDINQALDEAIDKELCKKQEKSFER"
     gene            6506..7477
                     /locus_tag="RJ272_000612"
     CDS             6506..7477
                     /locus_tag="RJ272_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7381728.1"
                     /translation="MKKNIFGVNKAIGKSHPHENGARLISLDYNYTKEYNYNYEICVT
                     QFNHLFSEVKFSHRVAALWLTPQNYIQKFKKSILILTSLLVLPNLAFSAGIPVVDVTA
                     NQQMATQNAKQVAEWAKDASRWTETVAHYQKQIQAYKDELLSKTGIRDSVTFLKDIKQ
                     IYSDFAEVGQNIQSFYNDVLRDPQKFLSDKGNEIFGKYTSFDRCNFDFLSQSEKNICK
                     MNLITYAAQVETYNQASKQMDTISQTLQKLQDKLVNSKDIKESTDVGNAIQLEVAKIQ
                     MVKNQVDLANASYENQRKIKEDMAMQEYSKSLQKPRESAMEFFKNNK"
     gene            7474..8472
                     /locus_tag="RJ272_000613"
     CDS             7474..8472
                     /locus_tag="RJ272_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7381729.1"
                     /translation="MNLDLFQTLGKSIQQIVDAIRQVGTNDKVAELSVLLSIIITLVI
                     MYKGYEVLMGRSQSPIRELTWDIVGKLVAITFALNLGGWLDLTISTMDGLYEWAGGGT
                     QMYKTLDEMYANTAQLTNIIWAKSSGVGGAILAIVAMLLCYVGFAIAVVPALTIFVVT
                     TFTQTLLVITAPIVFWLLVFKATKNVFTQWIGLLLSNTLVILLVGLFLGVFMEQISTW
                     IKYFAKVTQAGDEVLGTSIFFVIAALVLVIMIISAKLYAEKVANVSMEGAMGGVIGSV
                     LNPVGRLAGWAGGKVAGKTVNTAKAGGKLAAKGTLASAKGGYSFAKKMYERARNAG"
     gene            8462..8629
                     /locus_tag="RJ272_000614"
     CDS             8462..8629
                     /locus_tag="RJ272_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381730.1"
                     /translation="MQAKLIFILLLGVLFFSACSTKNQGKYDEFFNNQTGWIPVNTQN
                     KDLNKGTMDEK"
     gene            8619..9281
                     /locus_tag="RJ272_000615"
     CDS             8619..9281
                     /locus_tag="RJ272_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7381731.1"
                     /translation="MKNEFNTAIDYEASFRYLIEKSNKRAWLIAFISIFIAIISIIAV
                     VLLTPLKTIEPYVIRVDNTTGMVDILTMLDEKEIKANEALDKYFISTYVKAREGYYYD
                     LLNQDYLLTQLMSSEKVANEYRALYEGDNARDQILKNSNEVSVQILSIVLGESNGVKT
                     ATVRAIITTKNLTSKGTTQATKVITLSYDYILAKASEENRFLNPLGFKVLTYRIDDEV
                     AQ"
     gene            9278..10165
                     /gene="virB9"
                     /locus_tag="RJ272_000616"
     CDS             9278..10165
                     /gene="virB9"
                     /locus_tag="RJ272_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HDV7381732.1"
                     /translation="MKKIILINLLLCSFIWALNIPKTSTFDKRIAYAIYNANDVFQIN
                     AKNGYVSVLEFGTDERIINTATGFAEGWDLIEKDNLLFIKPKAYKTQLVQQENNNIGE
                     SQASQEFVLDPNPHDWKTNLIVITNLNTYVFDLKLVNQNNNATYKLSFSYPKKDLKAA
                     KEFLEAQEQENIRRDLNKNTIPRNWDFYMKINKGSEDISPNFAYDDGVFTYLGFDNTK
                     TFPAVFMYDNGKESILNTHIKKDGNYEVLVIQKITKQILLRSGDKVVGIFNRGYAKNP
                     LDKTRETSNENIQREINKK"
     gene            10192..11364
                     /gene="virB10"
                     /locus_tag="RJ272_000617"
     CDS             10192..11364
                     /gene="virB10"
                     /locus_tag="RJ272_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB10"
                     /protein_id="HDV7381733.1"
                     /translation="MQDKEQDNLDNDFENHTSDLHDQKNHLRKIQAYVIFAVGGLLLV
                     LILVYFLKSFLSSNTTTEEVQKEDNKDLAQSVKTKEFIPPPPQKTFDELIAQESPKPT
                     QDLILEPKPPKPRIVKGAGVTVVASSNNDGFGNNGTGNREEFGEKPNTVFEFGQNGTL
                     QNSNNLQGGSGDFVGEVFTPTIAKVSEFDQNLLLPKGTYIGCALKTRLVSSIKGGIAC
                     IVSNDVYSANGNTLLIEKGSTITGTFNTGQMDDGMDRLFVIWQEIRTPNNIIIPVYSG
                     ATDELGASGVQGWVDHHYLKRFGSAVLLSMIDDSLAILADQIAGKDNKNNYANYTENT
                     RDSAKEIANTALEKMIDIKPTLYKNQGDLVGVYVNRDIDFSKVYKLTRKKNVNNAR"
     gene            11345..12337
                     /gene="virB11"
                     /locus_tag="RJ272_000618"
     CDS             11345..12337
                     /gene="virB11"
                     /locus_tag="RJ272_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HDV7381734.1"
                     /translation="MSITLDKYTQKFFGEFLKDDNINEICYNGDNKIWVQNSKGLWEC
                     IDTKLDFEQAGHFATASASFKKDKIDVSRPILSCILVGGERMQIVIPPATKSEHISIT
                     IRKPSKTRFKMEDHIKSGLFEDLNPDDKNKIKPSDEELIKLYEARDYQNFISKAVSYG
                     KNIIIAGETGSGKTTFMKTLIDFISLDDRIITIEDVEEIKFYEHKNFVQLFYPSEAKS
                     TDFLNSATLLKSCLRMKPDRILLAELRGAETYDFINVLASGHGGSITSCHAGSPEETF
                     TRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRISGIYFKEMER"
     gene            12338..14149
                     /locus_tag="RJ272_000619"
     CDS             12338..14149
                     /locus_tag="RJ272_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HDV7381735.1"
                     /translation="MQNNKSIQMIFLAIASFILTYLITPIVFFFLNKVKIMKAIEIYN
                     INFTLQAISNGYPKIWLSLGITFGICFVVFSVLVLSLKAKKSQFGEARFANFNEIKKM
                     NLFSDNGIIIGKYKGKILRFSGQQFVALGAPTRSGKGVGIVIPNLLEWRESAVVQDIK
                     QECFDYTSKYRKEILGQEVYLFNPFSRQTHRYNPLTYIDMSDKEHCDSQLMDLGNILY
                     PQDGDSTSKFFNGLAQNLFIGLCYLWRDLQLTDYGKEFQSAFDINVGEFNFYNILQLS
                     KGFSLKNEGKTLKGFDDTYNFLSYCEVLDEATIRRLETYFNINSDATKSGVMSSFNAP
                     LVPFESETLRLSTETSDFDLRDLRKKKMTIYIGITPDQLANAQFILNIFWSQLILLNT
                     KELPQSNKDLKYTCLMVMDEFTAPGRIPIYQSAISFMAGYWLRSLMIYQSNSQLETQP
                     PLGYGKEGAKTLLTNHACQIFYAPREQEDAEAISRILGNTTFKTKSRSINTGNNGGGS
                     HSISEASRALMLPQELREMPFENELITIDSGKPILCNKAFYYSDSYFMDKFKAVSKSL
                     STIRKIPSRKQLEDAILKGECKVKIQIIGENNDKKIA"
     gene            14130..14567
                     /locus_tag="RJ272_000620"
     CDS             14130..14567
                     /locus_tag="RJ272_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cag pathogenicity island protein"
                     /protein_id="HDV7381736.1"
                     /translation="MIKKSLDNLVIMALVFIMVGCSTAPKPKELDDNSALSINNSILE
                     KKYSFVPKDPYLSGFNWTYHIVVEKKTIDDDFIKNDLITKTFLLAHNSTKIILVGRKD
                     LIEQYKQYFEKNQVLAPIELQPVNPIERDFNKVNILFFNKTNF"
     gene            14579..15343
                     /locus_tag="RJ272_000621"
     CDS             14579..15343
                     /locus_tag="RJ272_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381737.1"
                     /translation="MKKILFPFCVFGVINSVNALDLQLLSGDTRTSCEVILCLASPVK
                     PPECASSLAKYFSIHFKKPWKTIQARKEFLNLCPIDTTNDPEMYKYKNDILVNLDGEC
                     STTALNQRIEKSKQPLKVEKICTGGGHNGSRECVEIKTYGFRINPELTNSCKLLASSK
                     YTDYHLKYTCDKKFYEQKDWERGYELKEVSQEIYNALPVSQREQGEKLTPISYGEFIK
                     LPANKRKQEGFGKYYRIDIAYYQKIIIKKDCWINEK"
     gene            15346..16143
                     /locus_tag="RJ272_000622"
     CDS             15346..16143
                     /locus_tag="RJ272_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381738.1"
                     /translation="MNEEINSNENNLFEIVNEDNSKNIAMQNYNELLEKFENLIKIII
                     AKINVGKQNAQNNTEDGIFKDLESNIIELDNTYLALISYFKNPPNDEEKEIINKTISI
                     KKTMEDFAKFANEIQKISLDDKLKQYNEQINKFCEIVEYKLSHNAKNYNTFLDHFVED
                     GKQKLNTFSEIFTKMTKNTKWYLIFFSFTSIGLGIALGILILLTYIKYSEYNNLKERV
                     STITQGLATISIDENSKGSFTLSFAKNKKTIFNENKNSIQITLQGGE"
     gene            16214..16834
                     /locus_tag="RJ272_000623"
     CDS             16214..16834
                     /locus_tag="RJ272_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381739.1"
                     /translation="MAFGKLVNDKIVIDTNNALNYKNKEGDIQQRKVDTALIDVIKEA
                     GQVAAMEHGAVLFSAKINDEWKNYFVNRDEKTHNIVLKPTNSQNRDDFIYINSNINEQ
                     GYFYYTINQKREAAKELIEGIGIIEHQNQDGTKSHYLETNVRLYNEELKQELKEKGNE
                     FIAVISNAGIRIVNEAEMKAQKQEQQIQQTQEIKEPEKTQNQEFGR"
BASE COUNT         6524 a         2271 c         2662 g         5425 t
ORIGIN      
        1 aatttccttt taattttcgt tttttgataa accacaataa accatcatag ctttttccat
       61 catctttgta taataacttc caaatacttt taatagataa atctttatca agcaaggttt
      121 gtattttatc tatatcctta tcataaatac tatttaatga gcctttaggg cgtcctagtt
      181 ttttcccact agctctagca ttttctagtc ctgctttagt tctttgactt atcaaatctc
      241 tttcattttc tgctaaataa gcataaactg ataagattaa tttagaagca ggattattaa
      301 aattactaag ttccatttgt cttaaaaata ggaatttgat attattagaa ttaaactcaa
      361 gcaccaaatt aattatttct agcatacttc taccaagtct tgaaagttct gttgctatta
      421 ataaatcacc tgcttttagt ttttgtttta aatccttgat ttttcttttc tcttgagatt
      481 ttgtagaact tatttttact tctaagattt catctaaaat gatattattt ttatgacaat
      541 actccataat ttctaacttt tgagagtcta actcttgttt atttgttgat actcttatgt
      601 atgctatatt catcgttcta aatcttttag cttttgattt tttggtgttt tttcagtaaa
      661 ttctttaagt ttttgatgaa aatctttggc acataagtct tgtatagtct cttttaagct
      721 atactgctct cctatttcag taatatcaaa ctctttaaca cattcgccaa gccaagtaaa
      781 ttttttagtg agcttattaa ctattcttat aactcgtctt tcatttattg gctcttttga
      841 agtataacct gaatattgtc tatgctcgaa accattttca agcataaatt ttttaatcaa
      901 agaataaggt tctcttgtat ctttgaaata tttttcaaga ctttttgtag ataaatcaaa
      961 attaattgct ttgcgattta ttcccaaatt ccttctcctt cagctttact tgcagaaatt
     1021 aaatcgctat ttccttcttt ttcactaatc caaatccatt cttttgcatt ttttgtaaac
     1081 cattcagaat caatcaaata tttatatata aataaagtca tacaacctaa atcatactta
     1141 tcccctttac aatgataagt ttctttatta atttttatca ttcctgattc tttagcatat
     1201 tcatctatca ttttatacat atcttctaaa ttatatttgc cttcttttaa aatcttttct
     1261 tcatctaata ctattcttgt acctaaaagt gggtatgcca tttttttatc ctttcatcaa
     1321 aaacctaaca aattctagta aaaaatagct aatacttaaa taaaagcttt tgaataatat
     1381 taatttaatt ataaaactaa atttaattta tttattaaac acaaatttaa gacataaatt
     1441 aaacgagcaa ttttttaacg aaaggatatg gatgaaaaaa aggctattat cattaatttt
     1501 aatcagtcct atttttgcat ttggtgctgg tggtattgat aaagttaata cctttatgca
     1561 aaacttaagc attgctttgt atgcacttgg tggagtttta ctcacaattg cacttatgtg
     1621 gtgtgcttcc agaattatgt atcaagggca aactcttaga gaagttgcac ctgtttttat
     1681 cggtggcgtt atttttggat cagcttcagc aattgctggc tatatcatta cataaatata
     1741 aataggacta atcatggaga aaaatccact ttttaaaggt ttaacgcgtc cacctatgat
     1801 ttttggcgtt ccgatgacgc cttttgttat agcgatggga tgtatcattt taattgcatt
     1861 ttatagtcaa aacatttttt tagttggctt ttctattcct gtgtttttta ttatgaaagc
     1921 aatgacaaaa agagatgatt ttatttttcg attaatgttt ttaaaaatga gatttttctc
     1981 caatcctgct tccaaaaatt atcataaggt taaaacttac agcacaaact cttatagaca
     2041 aatgccgcca aattctaatt ttccaaaaat atctgttttc ggacttaatg cagaacctaa
     2101 ttttgaaaaa ttaattcctt tttcatcact aataaacgat tctgtagtca ttacaaaaga
     2161 ttatctttta atgacaactt gggagattgg aggaattagt tttgaagcag aagatgatga
     2221 tgagctagat attaaaaatg atcttttgaa tatgctattt aaatcatttg caaatgaacc
     2281 tgtaagcttt tattttcata attgtagata ttctatcgaa gacaaattaa cttcgaaatt
     2341 taataatgct tttttagaag aaattgacag aaaatattat gagagtttta agcaaggaac
     2401 tcttagaaaa aattctttat atttaactct tattttcaat cctttaaaag tgaaaataga
     2461 aaaaacaact tttatgaaaa gctcttttga aaataaaaga aaaacaatta gcgtatttct
     2521 agctaaattt agtgaatttg ctgatagact agaagcaaat attaaagatt ttaacccaaa
     2581 aagattaaaa acatattcca aagatgataa aacctactct aaacaactag aattttataa
     2641 ttatttattt ggtggtaaat ttaatcctat aagagtatta tcaagtccca tagatcagta
     2701 ccttaatggt aatttacaaa acatacaatt tggacacgat actattcaat ttaaccaaaa
     2761 tgatagcaca aaaaaatttg ctagatgcat tgaaattaaa gactatacaa atgaaacttt
     2821 tgcaggaatt ttagatatcc taatgtattt agatgtggaa tacactataa ctcaaagctt
     2881 ttctcctatt cctagagtgg atgcaaaatc agcaatatct aaacagaaaa aacaactcat
     2941 tgcaactgaa gatgatggat tttcacaagt agagcaaata gatgaagctt tggatcaact
     3001 tacaaatggg gaaatctctt ttggcaaata tcatttttca attcttgtgt atggaaatac
     3061 tataaaagaa tgtaaagaca acacaaatga agttgttaca aagatgaacg aattaggatt
     3121 tggagtaact ttagcaacga tcgccctacc tgcgacattt ttttcgcaac taccatcaaa
     3181 ttttgcaata cgcccacgca ttaatcttat ctcatccatt aattattcat ctttaattgc
     3241 tctacataat ttttctatgg gcaaaagaga taaaaactgc tggggtgacg ctgttagcat
     3301 tttaaaaaca ccaaacaaac aaccttatta ttttaatttt caccaaagtt ctggtgcaaa
     3361 taaaaatgat tttggaaaat tcttcctagc aaatactttg attttaggtc aaagcagtgg
     3421 cggtaaaaca gtgtttatga actttattgt agatcaaatg atgaaatacg ctagcaaaga
     3481 tacatttcct gatgatattc ctgaagataa aagaaaattt acagccattt atttggataa
     3541 agataaaggt gcgttaggca atatactttg tgctggcggt agatatatta gcattgaaaa
     3601 tggcaagccg acaggattta atcctttcat ggttgaaagc acacaagaaa atataagaca
     3661 acttcaatcg ctaatgaaac ttttagtaac tagaaataat gaaattctta caactagaga
     3721 agaagaaatg ctcaataatg ctgttaattc tcttatgaaa ggttttgaaa aagaagaaag
     3781 aaaatatcct atttctttat tacttgaaaa tttaactgaa aatgtagatg atgataattc
     3841 tcttaaatca agattagcac tttttaaaaa aggcaaacaa tttggctggg tatttgacaa
     3901 cgaatacgac aatttagatt ttcctgacga tatcaattta tttggaattg atggaacaga
     3961 atttcttgat gataaagatg tatcagggat attaagctat tacattcttt ggcgtgtaat
     4021 gagcttggca gatggtagaa gactttgtat tgatattgat gaagcttgga agtggctaga
     4081 aaatgaaatc gtgcaagaag aagttaaaaa caagtttaaa accattagaa agcagaatgg
     4141 atttttaaga cttgctacac aaagtttaga agacttttta aagcttaaaa atgctgcaac
     4201 tcttatagaa cagtcatcaa ctatggtatt tttatctaat ccgaaagcca aagaagaaga
     4261 atatgttaaa ggagtaggtt taagttatga tgagtatatg atcattaaag gtttcaatcc
     4321 tgtaaaaaga caatttttaa tcaaaagaca agatgaaaaa gtaatttgca ctcttgatct
     4381 tagccctttg ggtaatgaaa atttaaaaat attatctaca gaaacagcat acattgatgt
     4441 cattgaaaaa attttttcac aagaaaataa aagtcttgat gaaaaagtat tagagctgaa
     4501 agaaatttat aaaaactcat aggagataaa aaatgagtaa taaagcgatt attaataaac
     4561 aagaagtgca atttggcacc aaaggtaatc aaatcttttg cactagtttg gatgtggcta
     4621 aggtttttga caaagagcat aaaaatattt taagagatat tgaaaacatt ttaaatgatt
     4681 tgcgagaaat aggggatttg caatgtaagc tcaattttga gctttcattc aaagtccgta
     4741 aaatacaagg ttttaaaggc agagaaagaa aatatccata ttacaaccta actcgcgatg
     4801 gattctctct tttagcgatg ggttttacag gtaaagaagc attacaatgg aaaatacttt
     4861 ttatcgacgc ttttaatgaa atggaaaaac ttttacaaaa agaaattaaa agccctaaca
     4921 aatacttaac agatttgatg gaacttattt atccaaactt accacaaaac gattacaaag
     4981 ttagtgtgat tatcacagat aacccttatt ctaaagaagc taaaaatgta ttttctttga
     5041 attatcttgt tgataatcgc acaccaaaag atccaaagaa gttgcaatga gtgataaaga
     5101 attacaaaaa gaaatattag ctttagaaaa cgatgttaag caactagaag caactattga
     5161 tgtaattaaa caaagaatca ctcatcttaa agatattgct tgggatagac aaagtaaaaa
     5221 agaaagttct caaatgtata aagtgttaaa agaagataaa acacatacaa gggttaaaag
     5281 taatgtagga gatattaaag tagataaaga ctttatggat aaagaaatta aaaaacattt
     5341 agataatcca aatttaagag gaatggttac tacacaagag atgttatctt ttcctaaggt
     5401 ggctaaaggt gtggaagcta acaacgaagc aagaggctat acttggcaag taaaagcaaa
     5461 cgatggaaat actttagttt atggaagtag aaaatatgaa accaataacg aaaaaattca
     5521 taggttagcg acaagccata gtaaaacaga gaagaatgaa agacaagcgg aagtgggtgg
     5581 gcgtagtcat ccccaccatc ccatatttaa tgacttcaat tttcgcaaat ccgctgaaaa
     5641 tattatatca caacaaaaca aatccacaaa tgattttaaa gcaaaattag aagaatttag
     5701 caccaaaaaa acaaatgcaa ttgaatctat aaataaggag tttaaaagat gaaaaaatat
     5761 tacaccaaca aaaaggagtt aaacaatgaa taatgtaaat ctaatcggat acttaggaaa
     5821 agattttgaa gtaggcacta caaatagcgg aagagtttat gcaaaaaatt ctcttgcaat
     5881 tacaaagcga tggaaaaatg aaagaggcaa tgaagaaagt agcacgactt ggatacctat
     5941 tgttttattt ggcaaaagtg cagaaagtgc atcaacacac attaaaaaag gttctcagtt
     6001 tgcgtgtagt ggagaattat catccaatca atatcaagat gaagatggaa atactagaac
     6061 aatgctaacc gtgattgtat ctaaatttta ttggcttggc aaaaaagata aagatgacaa
     6121 tggaacacaa aatccacaag tcccaccaaa agagccaaat attgattatg aaaacacaaa
     6181 tatagaatct gaagaaacac aagtatttta agatttaagg ataaaaatgt ctataaaaaa
     6241 tttaagtgta gaagaattag cgcaagaatt agaaacttca aatcatgaaa agctgattaa
     6301 agctttgttt ttatttgaaa aaaattcttc aatggaagat cttaattcag atcaaataga
     6361 aataatttta gatgaagtat atgaatttta tatcaatcat aaatctatat cttctttttt
     6421 acaagaagat ataaaccaag cattagatga agctattgat aaagagcttt gcaaaaaaca
     6481 agaaaaatca tttgaaaggt aaaaaatgaa aaaaaatatc tttggtgtta ataaagccat
     6541 agggaaatct catccccatg aaaatggggc aagactaata agccttgact ataattatac
     6601 aaaggagtat aattataact atgagatttg tgtaactcaa tttaaccacc tcttttctga
     6661 ggttaaattt agccacaggg ttgcagccct atggctaacc ccacaaaatt atatccaaaa
     6721 atttaaaaaa tctattctta ttcttacttc cttattagtt ttgcctaact tagcatttag
     6781 tgctggtatt cctgtagttg atgtaacagc aaatcagcaa atggctacac aaaacgctaa
     6841 acaagtggca gaatgggcta aagatgcttc aagatggact gaaacagtag cacactatca
     6901 aaaacaaatt caagcttaca aagatgaact tttatcaaaa acaggcatta gagattcagt
     6961 aacttttcta aaagatatta aacaaatata ttcagatttt gctgaagttg ggcaaaatat
     7021 tcaatcattt tacaatgatg tattaagaga tccacaaaaa tttttaagtg ataaaggtaa
     7081 tgaaattttt ggaaaatata cgagctttga tcgatgtaat tttgattttt taagtcaatc
     7141 agaaaaaaac atttgcaaaa tgaatttaat cacttatgct gctcaagtag aaacctataa
     7201 tcaagcttca aaacaaatgg atacgattag tcaaacactc caaaaattgc aagataaatt
     7261 agtaaattcc aaagatatta aagaaagcac agatgttggc aatgctattc agttggaagt
     7321 ggcaaaaatt caaatggtta aaaatcaagt tgatttagcc aatgcaagtt atgaaaacca
     7381 aagaaaaatt aaagaagata tggctatgca agaatattct aagtcgttac aaaagccacg
     7441 agaaagtgct atggaatttt ttaagaacaa caaatgaatt tagatctttt tcaaactcta
     7501 ggtaaaagca tacaacaaat tgttgatgct ataagacaag taggcacaaa tgataaggtt
     7561 gcagaactta gcgtattgct ttctattatt atcactttag tcattatgta taaaggctac
     7621 gaagtcttaa tgggtagaag tcaaagccct attagagaat taacttggga tatagttgga
     7681 aagcttgttg ccattacttt tgccttaaat ttagggggtt ggctagattt aacaatttca
     7741 acaatggatg gattatacga gtgggcagga ggcggaacgc aaatgtataa aacactagat
     7801 gaaatgtatg caaacacagc acaacttaca aacataattt gggctaaatc aagtggtgtt
     7861 ggaggtgcta ttttagctat tgtagcaatg ctactttgtt atgtaggatt tgcaattgct
     7921 gtagttcctg cacttacaat ctttgttgtt actaccttca cacaaacact gcttgtaatc
     7981 accgccccta tagtattttg gcttttagtt tttaaagcca ctaaaaatgt ttttacacag
     8041 tggataggac ttttactttc aaatacttta gtcattttgc ttgtaggctt atttttgggt
     8101 gtttttatgg agcaaatatc aacttggatt aagtattttg caaaagtaac tcaagcagga
     8161 gacgaagtat taggcacaag tattttcttt gtcattgccg ctttagttct tgtcattatg
     8221 attatttctg caaaacttta tgccgaaaaa gttgcaaatg tttcaatgga aggagctatg
     8281 ggcggagtaa taggttctgt tttaaaccct gttggtagat tagcaggttg ggctggaggc
     8341 aaagtcgcag gaaaaactgt aaatacagca aaagctggtg gaaaattagc agccaaaggt
     8401 actttggcta gtgctaaagg cggttatagt tttgctaaaa aaatgtatga aagggctaga
     8461 aatgcaggct aaattaattt ttattttatt acttggtgtt ttatttttta gtgcttgtag
     8521 cactaaaaat cagggtaaat atgatgaatt ttttaacaat caaacaggat ggattcctgt
     8581 taatactcaa aacaaagatt taaataaagg aactatggat gaaaaatgag tttaatactg
     8641 caatagatta tgaagcaagt tttagatact taattgaaaa aagtaataaa agagcttggc
     8701 ttattgcttt tatttctatt tttatagcca ttatttccat tatagctgtt gttttactta
     8761 ctcctttaaa aacaatagaa ccttatgtaa taagagtaga caatactaca ggaatggttg
     8821 atattttaac catgcttgat gaaaaagaaa ttaaagcaaa tgaagcatta gataaatatt
     8881 ttattagcac ttatgtaaaa gctagagaag gctattatta tgatctttta aatcaagatt
     8941 atttacttac tcaattaatg agttctgaaa aagtagcaaa tgaatatagg gctttatatg
     9001 aaggtgataa tgcaagagat caaattctaa aaaactccaa tgaagtaagt gttcaaattt
     9061 taagtattgt tttaggagaa agtaacggag tgaaaactgc tacagtcagg gcaattatta
     9121 ctacaaaaaa tttaacttcc aaaggaacaa ctcaagcaac aaaagtaata acattaagtt
     9181 atgactatat cttagcaaaa gctagcgaag aaaacagatt tttaaatcct ttaggtttta
     9241 aagtattaac ttatagaatt gatgacgagg tggcacaatg aaaaaaataa tcttgataaa
     9301 tttattgttg tgtagtttta tttgggcttt aaatattcca aaaacttcta catttgataa
     9361 aagaattgct tatgcaattt ataatgcaaa cgatgtattt caaattaatg caaaaaatgg
     9421 ctatgttagc gttttagaat ttggtaccga tgaaagaatt atcaatactg ctacaggttt
     9481 tgcagaaggt tgggatttaa ttgaaaaaga caatctttta tttataaaac ctaaagctta
     9541 taaaacacaa cttgttcaac aagaaaacaa taatatagga gagagtcaag catcacaaga
     9601 attcgtttta gatccaaatc ctcatgattg gaaaactaac ctaattgtta ttacaaatct
     9661 aaatacttat gtattcgatt taaaacttgt aaaccaaaat aataacgcta cctataaact
     9721 cagtttttct taccctaaaa aagatttaaa agccgctaaa gaatttttag aagcacaaga
     9781 acaagaaaat atacgcagag atttaaataa aaataccatt cctagaaatt gggattttta
     9841 tatgaaaatt aacaaaggta gcgaagacat aagtccaaat tttgcttatg atgatggtgt
     9901 ttttacatat cttggttttg ataatactaa aacttttcct gctgttttca tgtatgataa
     9961 tggtaaagaa agtattttaa atactcatat taaaaaagat ggcaattatg aagttttagt
    10021 aattcaaaaa attactaaac aaatcttgtt aagaagtggc gataaagtcg ttggtatttt
    10081 taatcgtggc tatgcaaaaa atcctttaga taaaacaaga gaaacctcca atgaaaatat
    10141 tcaaagagag ataaataaaa aataaaacga atgaaactaa aaggaataag tatgcaagat
    10201 aaagaacaag ataatttaga caatgatttt gaaaatcata caagtgattt acacgatcaa
    10261 aaaaatcatc ttagaaagat acaagcttat gtaatttttg ctgtgggtgg gttattatta
    10321 gttttaatat tagtttattt tttaaaatca tttttaagta gcaatacaac taccgaagaa
    10381 gtacaaaaag aagataataa agatttggca caaagtgtta aaacaaagga atttattcca
    10441 cctcctccac aaaaaacatt tgatgaacta attgcacaag aatcaccaaa accgacacaa
    10501 gatttaatac ttgaacccaa acctccaaag cctagaattg ttaaaggtgc aggagttact
    10561 gttgtcgctt catctaataa tgatggattt ggaaataatg gcacaggaaa cagggaagaa
    10621 tttggagaaa aacctaacac agtgtttgag tttggacaaa atggtacttt acaaaactct
    10681 aataatttac aaggtggtag tggagatttt gttggagagg tcttcactcc cacaatcgct
    10741 aaagttagcg aatttgatca aaatttacta ttgcctaaag gaacttacat aggctgtgct
    10801 ttaaaaacaa gattggtaag ttctattaaa ggtggaatcg cttgtattgt atcaaatgat
    10861 gtctattctg ctaatggaaa tactctttta attgaaaaag gtagcaccat tacaggaact
    10921 tttaatactg gacaaatgga tgatggaatg gatagattat ttgtaatttg gcaagaaatt
    10981 agaacaccga acaatatcat tatccctgtt tattcaggtg ctaccgatga attaggtgca
    11041 agtggcgttc aaggttgggt agatcatcat tacttaaaac gatttggctc tgctgtttta
    11101 ctatcaatga tagatgattc actggctatc ttagcggatc aaattgcagg taaagataat
    11161 aaaaataatt atgccaatta cactgaaaat acaagagatt ctgcaaaaga aatcgcaaat
    11221 acagcactag aaaaaatgat tgatattaaa cctacacttt ataaaaatca aggtgatttg
    11281 gtcggtgttt atgttaatcg tgatattgat ttttcaaaag tttataaact tacaaggaaa
    11341 aagaatgtca ataacgctag ataaatatac tcaaaaattt tttggagaat ttttaaaaga
    11401 tgataatatc aatgaaatct gctataacgg cgataataaa atttgggtac aaaactctaa
    11461 aggattatgg gaatgtatag atactaaact tgattttgaa caagctggac attttgcaac
    11521 tgcttcagcc tcattcaaaa aagataaaat agatgtatca cgccctattc ttagttgtat
    11581 tctagtaggt ggagagcgta tgcaaattgt tattcctcct gctacaaaaa gcgaacacat
    11641 ttcaattact attagaaagc caagcaaaac tcgctttaaa atggaagatc atattaaaag
    11701 cggacttttt gaagatttaa atcctgatga taagaataaa atcaaaccaa gcgatgaaga
    11761 attaatcaag ctatatgaag caagagatta tcaaaatttt atatccaaag ctgttagcta
    11821 tggtaaaaat attattatcg ctggtgaaac aggaagcggt aaaactacct ttatgaaaac
    11881 tcttattgat tttataagcc ttgatgatag gattatcaca atagaagatg ttgaagaaat
    11941 caaattctat gaacacaaaa atttcgtgca attattctat cctagcgaag caaaaagtac
    12001 agatttttta aattctgcaa cacttttaaa atcttgttta agaatgaagc ctgataggat
    12061 tttactagca gagcttagag gtgctgaaac ttatgatttt attaatgttt tagctagtgg
    12121 tcatggtgga agtatcacaa gttgccatgc aggaagcccc gaagaaacat ttacacgact
    12181 tgctttaatg actctacaaa atccacaagg tcaatgcgtg ccttttgaaa ttatccaaaa
    12241 aacacttaaa gacttaatag atattgtcgt gcatatccat gcccatcatg gaaaaaggcg
    12301 tattagcggc atttatttta aagaaatgga gagataaatg caaaataata aaagcattca
    12361 aatgattttt cttgctatag cgagttttat tctcacttac ttaataacgc ccattgtttt
    12421 tttcttttta aataaagtaa aaataatgaa agcgattgaa atttataaca taaattttac
    12481 gctacaagca atctctaatg gttatccaaa aatatggctt tctttaggta ttacttttgg
    12541 catttgtttt gttgtttttt ctgttttggt gttatcttta aaagccaaaa aatctcaatt
    12601 tggcgaagct agatttgcaa attttaatga aattaaaaaa atgaatttat tttcagataa
    12661 tggaataatt atcggaaaat acaagggaaa gattttaaga tttagcggtc agcaatttgt
    12721 agccttagga gcacccacaa gaagtggtaa aggcgtaggt atagtaatac caaacttgtt
    12781 agagtggcga gaaagtgctg ttgttcaaga tattaaacaa gaatgttttg actacacaag
    12841 caaatataga aaagagattt taggacaaga agtttattta ttcaatccat tttcaagaca
    12901 gacacatcgc tataatcctt taacttatat tgatatgagt gataaagagc attgcgatag
    12961 tcaattaatg gatttaggta acatactcta cccacaagat ggggattcta cctcaaaatt
    13021 tttcaatggc ttagcacaaa acttatttat tgggctttgt tatttatggc gtgatttaca
    13081 attaaccgat tatggaaaag aatttcaaag tgcgtttgat attaatgtag gagaatttaa
    13141 cttttacaat attttgcaac tctcaaaagg tttctcactt aaaaatgaag gaaaaacttt
    13201 aaaaggattt gatgatacat acaatttctt atcttattgt gaagttttag atgaagcaac
    13261 cataaggcgt ttagaaactt attttaatat taactcagat gctactaaat caggtgtaat
    13321 gagctctttt aatgctccgc ttgtgccatt tgaaagtgaa acattaagat taagcacaga
    13381 aacaagcgat tttgatttgc gagatttgcg taaaaagaaa atgacaattt atataggaat
    13441 tacgcctgat caattagcaa atgcacaatt tattttaaat attttttggt cgcaacttat
    13501 tttattaaac accaaagaat tgccacaaag caataaagat ttaaaatata cttgtttaat
    13561 ggttatggat gaatttactg cacctggtag aattcctatc tatcaatcag caatcagttt
    13621 tatggctggt tattggttaa gatctttgat gatttatcaa tcaaattcac aacttgaaac
    13681 acaaccacct ttgggctatg gaaaagaagg agctaaaaca ctcttaacaa atcatgcttg
    13741 tcagattttc tatgcaccaa gagagcaaga agacgcagaa gctatctcta ggattttagg
    13801 aaatactact tttaaaacaa aatcaagaag tattaataca ggcaataatg gaggtggatc
    13861 acatagtatt agcgaagcaa gtagggcttt aatgttgcca caagaactta gagaaatgcc
    13921 ttttgaaaat gaactaatta ctattgatag tggaaaacct attttatgca ataaagcatt
    13981 ttattattca gattcttatt ttatggataa atttaaagct gtttcgaaaa gtttatcaac
    14041 aataagaaaa atcccttcac gcaaacaatt agaagatgcg atcttaaagg gagaatgtaa
    14101 agtaaaaatt caaattatag gagaaaacaa tgataaaaaa atcgcttgac aatttagtca
    14161 taatggcttt ggtttttata atggtgggtt gctctacagc cccaaaacca aaagaattgg
    14221 atgataattc tgcattgagt atcaataatt ctattttgga gaaaaaatat agctttgttc
    14281 ctaaagatcc ttatttgagc ggatttaatt ggacttatca tatcgtggtt gagaaaaaaa
    14341 ctatagatga tgattttatt aaaaatgatc ttattactaa aactttttta ctcgcacaca
    14401 attctacaaa aatcatttta gtaggtagaa aagatttaat tgaacaatat aagcaatact
    14461 ttgaaaaaaa tcaagtttta gcacctatag aattacagcc tgtcaatcct attgagcgtg
    14521 attttaacaa agttaatatt ttatttttta ataaaacaaa tttttaaagg agagaaaaat
    14581 gaaaaaaata ttattcccat tttgtgtttt tggtgtaata aatagtgtta atgctttaga
    14641 tttgcaatta ctatctggtg atactagaac ttcttgcgaa gtaattcttt gtttagcaag
    14701 tccagttaaa ccacctgaat gtgcatcttc tttagcaaaa tattttagca ttcactttaa
    14761 aaaaccttgg aaaactatcc aagcaaggaa agaattttta aatttgtgtc ctattgacac
    14821 aacaaatgat ccagaaatgt ataaatataa aaatgatatt ttagttaact tagatggaga
    14881 atgctctaca actgcattaa atcaaagaat tgaaaaatca aaacaacctt taaaagttga
    14941 aaaaatatgc actggtggtg ggcataatgg atcaagagaa tgcgtagaaa taaaaactta
    15001 tggatttaga ataaatcctg aacttacaaa ctcttgcaaa cttttagctt catcaaaata
    15061 cacagattat catttaaaat atacttgcga taagaaattt tatgagcaaa aagattggga
    15121 aagaggttat gaattaaaag aagtatcaca agaaatttat aatgctttac ctgtatcgca
    15181 aagagaacaa ggagaaaaat taactcctat aagttatgga gaatttatta aactacctgc
    15241 taataaaaga aaacaagaag gatttggcaa gtattataga atcgatattg cttattatca
    15301 aaaaataatt attaaaaaag attgctggat aaacgagaaa taacaatgaa tgaagaaatt
    15361 aattctaacg aaaataatct ttttgaaata gttaatgaag ataattcaaa aaatatagct
    15421 atgcaaaact ataatgaatt attggaaaaa tttgaaaatc ttataaaaat aattattgct
    15481 aaaattaatg ttggtaagca aaatgcacaa aataatacag aagatggtat ttttaaagat
    15541 ttagaaagca atattataga gctagataat acctatttag ctcttatttc ttattttaaa
    15601 aatcctccta atgatgaaga gaaagaaatt attaataaaa ccatttctat taaaaaaaca
    15661 atggaagatt ttgctaaatt tgctaatgaa attcaaaaaa tatcattgga tgataaactt
    15721 aaacaatata acgagcaaat taataaattt tgcgaaatag tagaatataa actttctcat
    15781 aatgcaaaaa attataatac ttttcttgat cattttgttg aagatggaaa acaaaaattg
    15841 aatacatttt cagaaatttt tacaaaaatg acaaaaaata caaaatggta tcttatattt
    15901 tttagtttta cttctatagg gttaggtata gctcttggca ttttaatttt gcttacttat
    15961 ataaaatatt cagaatataa caatttaaaa gaaagagtaa gcacaatcac tcaaggttta
    16021 gccactatct ctattgatga aaatagtaaa ggaagcttta ccttgagctt tgcaaaaaac
    16081 aaaaaaacta ttttcaatga gaataaaaat agtattcaaa tcacactaca aggaggtgaa
    16141 tgaacagaac aattatatac aaaaaaatgc aaaaaacaaa aacaaatcat aaaaaattta
    16201 aaaaggagaa aaaatggcat ttggaaaatt agtaaatgat aagattgtta ttgataccaa
    16261 taatgcttta aactacaaga ataaagaagg tgatattcaa caaagaaaag tagatactgc
    16321 tttaatcgat gttattaaag aagctggaca agttgctgca atggaacacg gagctgtgct
    16381 tttttcagca aaaataaatg atgagtggaa aaactatttt gttaatagag atgaaaaaac
    16441 tcacaatata gttttaaaac ctacaaattc acaaaataga gatgatttca tatatatcaa
    16501 ctctaacata aatgagcaag gttattttta ctacacaatt aatcaaaagc gagaagctgc
    16561 aaaagaatta attgaaggaa ttgggattat agaacaccaa aaccaagatg gaactaaaag
    16621 tcactattta gaaactaatg taaggcttta caatgaagaa ttaaaacagg aacttaaaga
    16681 aaaaggtaat gagtttatag ctgtaatttc aaatgctgga attagaattg ttaatgaagc
    16741 tgaaatgaaa gcacaaaaac aagaacaaca aatacagcaa actcaagaaa ttaaagagcc
    16801 tgaaaaaact caaaaccaag agtttggaag ataaaaatat gcacctcata aaggtgcata
    16861 tttatagtta ttattattta tt
//
LOCUS       DAPIWV010000027        16825 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.028, whole genome shotgun sequence.
ACCESSION   DAPIWV010000027 DAPIWV010000000
VERSION     DAPIWV010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.028"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            95..1366
                     /locus_tag="RJ272_000624"
     CDS             95..1366
                     /locus_tag="RJ272_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7381740.1"
                     /translation="MNDKIYKFHPNDTKMDKKIIQITEKSGFKVAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(1394..2659)
                     /gene="secY"
                     /locus_tag="RJ272_000625"
     CDS             complement(1394..2659)
                     /gene="secY"
                     /locus_tag="RJ272_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDV7381741.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(2659..3051)
                     /locus_tag="RJ272_000626"
     CDS             complement(2659..3051)
                     /locus_tag="RJ272_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDV7381742.1"
                     /translation="MNLTKAAGSTRKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVPKIKDENISVTGSK"
     gene            complement(3056..3499)
                     /gene="rpsE"
                     /locus_tag="RJ272_000627"
     CDS             complement(3056..3499)
                     /gene="rpsE"
                     /locus_tag="RJ272_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDV7381743.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(3511..3867)
                     /locus_tag="RJ272_000628"
     CDS             complement(3511..3867)
                     /locus_tag="RJ272_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDV7381744.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(3877..4413)
                     /gene="rplF"
                     /locus_tag="RJ272_000629"
     CDS             complement(3877..4413)
                     /gene="rplF"
                     /locus_tag="RJ272_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDV7381745.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(4492..4887)
                     /gene="rpsH"
                     /locus_tag="RJ272_000630"
     CDS             complement(4492..4887)
                     /gene="rpsH"
                     /locus_tag="RJ272_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDV7381746.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(4897..5082)
                     /locus_tag="RJ272_000631"
     CDS             complement(4897..5082)
                     /locus_tag="RJ272_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HDV7381747.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(5084..5629)
                     /gene="rplE"
                     /locus_tag="RJ272_000632"
     CDS             complement(5084..5629)
                     /gene="rplE"
                     /locus_tag="RJ272_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDV7381748.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(5633..5866)
                     /locus_tag="RJ272_000633"
     CDS             complement(5633..5866)
                     /locus_tag="RJ272_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDV7381749.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(5866..6234)
                     /gene="rplN"
                     /locus_tag="RJ272_000634"
     CDS             complement(5866..6234)
                     /gene="rplN"
                     /locus_tag="RJ272_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDV7381750.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(6234..6485)
                     /gene="rpsQ"
                     /locus_tag="RJ272_000635"
     CDS             complement(6234..6485)
                     /gene="rpsQ"
                     /locus_tag="RJ272_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDV7381751.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(6495..6680)
                     /gene="rpmC"
                     /locus_tag="RJ272_000636"
     CDS             complement(6495..6680)
                     /gene="rpmC"
                     /locus_tag="RJ272_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDV7381752.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(6667..7092)
                     /gene="rplP"
                     /locus_tag="RJ272_000637"
     CDS             complement(6667..7092)
                     /gene="rplP"
                     /locus_tag="RJ272_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDV7381753.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(7095..7796)
                     /gene="rpsC"
                     /locus_tag="RJ272_000638"
     CDS             complement(7095..7796)
                     /gene="rpsC"
                     /locus_tag="RJ272_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDV7381754.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(7796..8239)
                     /gene="rplV"
                     /locus_tag="RJ272_000639"
     CDS             complement(7796..8239)
                     /gene="rplV"
                     /locus_tag="RJ272_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDV7381755.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVVVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(8250..8531)
                     /gene="rpsS"
                     /locus_tag="RJ272_000640"
     CDS             complement(8250..8531)
                     /gene="rpsS"
                     /locus_tag="RJ272_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDV7381756.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(8533..9363)
                     /gene="rplB"
                     /locus_tag="RJ272_000641"
     CDS             complement(8533..9363)
                     /gene="rplB"
                     /locus_tag="RJ272_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDV7381757.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(9365..9646)
                     /locus_tag="RJ272_000642"
     CDS             complement(9365..9646)
                     /locus_tag="RJ272_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDV7381758.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            complement(9649..10263)
                     /gene="rplD"
                     /locus_tag="RJ272_000643"
     CDS             complement(9649..10263)
                     /gene="rplD"
                     /locus_tag="RJ272_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDV7381759.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            complement(10260..10835)
                     /locus_tag="RJ272_000644"
     CDS             complement(10260..10835)
                     /locus_tag="RJ272_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDV7381760.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(10845..11156)
                     /gene="rpsJ"
                     /locus_tag="RJ272_000645"
     CDS             complement(10845..11156)
                     /gene="rpsJ"
                     /locus_tag="RJ272_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDV7381761.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(11354..12115)
                     /locus_tag="RJ272_000646"
     CDS             complement(11354..12115)
                     /locus_tag="RJ272_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDV7381762.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVQFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(12150..14144)
                     /locus_tag="RJ272_000647"
     CDS             complement(12150..14144)
                     /locus_tag="RJ272_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDV7381763.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(14113..14913)
                     /gene="rsmA"
                     /locus_tag="RJ272_000648"
     CDS             complement(14113..14913)
                     /gene="rsmA"
                     /locus_tag="RJ272_000648"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDV7381764.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            14993..15529
                     /locus_tag="RJ272_000649"
     CDS             14993..15529
                     /locus_tag="RJ272_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDV7381765.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            15553..16623
                     /gene="rlmN"
                     /locus_tag="RJ272_000650"
     CDS             15553..16623
                     /gene="rlmN"
                     /locus_tag="RJ272_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HDV7381766.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMSINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            16620..16718
                     /locus_tag="RJ272_000651"
     CDS             16620..16718
                     /locus_tag="RJ272_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381767.1"
                     /translation="MTMLDIFEIIFITAVVIIGFGGIVFVVTKEKK"
     gene            complement(16732..16808)
                     /locus_tag="RJ272_000652"
     tRNA            complement(16732..16808)
                     /locus_tag="RJ272_000652"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16772..16774),aa:Met,seq:cat)
BASE COUNT         4958 a         3174 c         2472 g         6221 t
ORIGIN      
        1 actaccataa caaaataaat aaaatataat tttaagtaat tttaaataca aaccataatt
       61 tttggagtat aataaaataa aaaaggtaaa aattatgaat gacaaaattt ataaatttca
      121 tccaaatgac acaaaaatgg ataaaaaaat aattcaaatt actgaaaagt ccggatttaa
      181 agtagctgtg ttttctatgg ctgctatgac tatgctagga agtgtggtca tttcatctgc
      241 tctgcctgct atcaacagac attttgaaga acttttaacc caaagtggcg ctactcttgc
      301 ttcaagtttc acattagctc atcttgatat acttgttcgc ttagttttaa ccatccctgc
      361 tatttttgtt gtcattttat ctccatttgc tggtatttta atggataaat ttggcaaatt
      421 aaaattcatt cttccagcta tggtggtttg gactatttct gggataagtg gctttttctt
      481 aaatgatatt tatgctatac tgacttcaag agctattttt ggtatggcaa ctgcttttat
      541 aatgacaggc gcttcggctt tgcttgggga ttattatagt cgtggtggct ttaatcgcag
      601 agaaaatgct ttaagtcttc aaggattttt ttgtgcagta gggggtgctg tttttatttc
      661 tattgcggga tttgtttcaa gttattcttg gcgttatcct tttttggtat atggacttgg
      721 aattttaatt accttaatgg ctatcattta tctttttgaa cctagaaaat ttaaattcta
      781 taatcataca aaaatagaaa caaaaacaaa ttattggcaa tttttcccta tctattttat
      841 aggttttttt atcatggtag tttattatat ttcgccaact caacttcctt actatataga
      901 agaacatttg ggattggatc ctaaatatat aggtatttcg atgtctgtat ctgcactatg
      961 ttatggtttt ttctctctaa gctatagata tattataaaa ttcttaagta ttaaaactat
     1021 ttatgtttta actcttttta tcgtatcttg ttcttttttg ctgctttttt tagtagatag
     1081 ctttttcaca gttttaatcg ccttagcttt gcttggaatg ggtggaggta ttatgcttgt
     1141 aaataatacg gcttatcttt tttcaatctg tcctgaaaat gctcgctcta gggcttatgg
     1201 aattttagca agttgtatat ttttaggaca atttttaagt cctattatct ctcaacctat
     1261 cgttagacaa atgggtcttg tagatgcttt tttaatatgg tcaatagtaa tttttatagt
     1321 gtgcattgtg tttttatttt taaagcaaaa acctagaata aattagcaag aaaaatcttg
     1381 ctaattttat ttattacaaa cctaccgcac ttaaagtttg gtatttactc atataaattt
     1441 gagcttcaat ttttctcatc gtatcaagtg ctacttgaac tacaataagt acagaagtgc
     1501 cgccaaaatg aaaaggcaca cccataaatt tcaccaaaac ccaaggtaag gttgcaacaa
     1561 gccctaaata aatagaacct gataaagtta aacgagaagc cacttcgtta agataacttg
     1621 aagttccttc acctggacga attccaggga taaaaccgcc ttgttttttc aaattttctg
     1681 ctatgtcttt agcgttaaat acgatagaag cataaaaata agcaaagaaa attacaaaca
     1741 agaaagttag aacatgaaac aaataaccat ttggatttaa aaagtcatta atggcttgta
     1801 gataaggatt tgtactagtt tgtaaaattg ttgttggaaa catcaaaatc gcactagcaa
     1861 aaatcggtgg aataacccca ctaagattga gtttaatagg aatataattc ataatgcgtt
     1921 tgttttgatt ttgcattaca actttacgag aataagaaat aggaattctt ctttctccaa
     1981 gttctatata aataatcacc cctatggtga ttaaaatcaa agcaaaaatt gcaaaagcgg
     2041 ttaagaaatt catctcgcct gaattgattt gtcctacagt tcctgaaatc gctcttggaa
     2101 tacctgaaac aatacctgca aaaatgatta aagaaatacc atttcctata cctctttgtg
     2161 tgatttgttc gccaagccac attaaaagca tagttccagc aagcatagaa atagcacaaa
     2221 gtgcgataaa catatttaaa tcttccacca ttatagcccc tgcaccacca cgaccgtgca
     2281 agctttgcaa acctatagca acgcctatac tttgaaccaa agtaatcaca atagtcgcat
     2341 aacggataat ttgcatatat ttttgcatac tatcacgctc ttttttcatc ttaccaatat
     2401 ttggaaaagt tgctgcaaga agctccataa taatagaagc agtaatataa ggcataatac
     2461 ctaaagaaat gatagaaaag cgttcagccg ctccaccact aaaaacatta aataaaccca
     2521 aagcattgtt ttgattgtta ttaaaaaatt ccgcaatcac atcagcattg acgccaggaa
     2581 ctggcacata agccagaacc ctataagcaa ataaaaatgc taaggtgatt aaaatcttat
     2641 tcgtcaatgc tctattcatt attttgatcc ggtgacgcta atattctcgt ctttgatttt
     2701 tggtactaag tcttttgcac ttgcaccaat taatttgatt ttattcacag attttgaaat
     2761 tttgtgaaca cttttaatgc tctcaaatgt aatttcacta agctctttta cagctgtgat
     2821 tttttcaaca ttgatcacat aaggtttttg aattttagaa gtaaaaccta cttttggtag
     2881 tcttctttga agtggttgtt gacccccttc aaaacctctt ttttcattat aaccttttct
     2941 agcagtttga cctttacccc ctttagtagc agtcttaccc atgccagaac cttgaccacg
     3001 gccaattctt ttagttttac gcgttgaacc cgctgctttt gttaaattca tcttcttatc
     3061 cttttaacat tgttaaagct ttgattgtag cacgaaccac attagctgaa ttatttgaac
     3121 ccaaagactt ggttaagatg tctttaatac ctgcaagttc cacgataggg cgtgtagaac
     3181 cacctgcgat aactcctgta ccttcgctag ctggtttaag taaaattcta cttgcgttgt
     3241 atttcacctc tacatcgtga gcgatagttg agcctttagt tttaacttca acgatatttt
     3301 taaacgcatc gtcaacagct ttacggatgg catctggaac ttccttagcc ttaccataac
     3361 caacacctac taaacctttg cggtttccaa cgataactaa agcagtaaat ctaaatcttc
     3421 taccaccttt aacaacctta gtaactctgc cgatatcgac gattacttct tcaaattctt
     3481 ctctattata tttttccatc gatttacccc ttatagccta atgccatttt ctcttaaaga
     3541 ttcagccaat gctgcgataa caccatgata tacataacca tttctatcaa aaacagcttg
     3601 ttctatcttt ttagctttta aagttttagc aaattcagca gcgatttttt tagcaccttc
     3661 tttatttgct ttaacgccaa gtttgcgtcc atcaactgct gctaaagtta cagcttttac
     3721 atcatcaatc gcttggatat atagagttct gtttgattta aatacagaaa ttcttggaaa
     3781 attttcacaa cctgaaattt tcgctctaat tctttttttt cttttgattc ttaaagttag
     3841 ttttcttttt aatacatttg ctctcatatt ctacccttac ttcttagatg tcttaccagc
     3901 tttgcggata atgcgttcat cagaatactt aacgcctttt cctttatatg gctctggtgg
     3961 tctaaattca cgaatttgag cagcaacttg acctacaact tgtttatcac ttcctttaac
     4021 tgcaatagta tttttatcca ctacaatttc aattccttct ggaatatcat aattaatagg
     4081 atgagaaaaa ccaaggctta gttctaaaac tttacctttt aaagctgctt tataaccaac
     4141 tccattgatt tcaagagttt ttgaaaaacc ttgagttaaa cctacaacga tattgtaagc
     4201 taaagctctg taagttcccc aataagctct actttgtctg tcttcacctt ttggagaaaa
     4261 aagaatatta ttatctttaa tctcaacatt tacatttgct ttagtatcaa gttcttttgc
     4321 taaatttcct tttttaaatt taagcaaatt tccttctaat tttacttcta ctcctgctgg
     4381 aatagcaatc ggttgtttac ctatacgaga catatttttc ctttttattt gtctaggata
     4441 tttctacttt tttaaaagaa tggataccca atgccataaa aagcagattt tttaccaaat
     4501 ggtacataaa atttcgccgc caacacctgc tttataagct tcatcattag ctaaaacgcc
     4561 atgacttgtg ctaactacga tagtaccata accattttta aaacgcttga tttcatcttt
     4621 acctttataa acacgacgac caggcttaga aattctttta agctcattga taacactctt
     4681 acctttttca tcgtatttta aaactacatt gataaatttc tttttatctt cttcaataac
     4741 attaaaactc tcaatatagc ccttagcttg aaaaattcca actaaagctt ctacaacttt
     4801 agaatgtaaa agcttggttg tttcaagctt tctcattcct gcatttctga tacgagtgag
     4861 tgaatctgaa ataatatcat ttatcatatt ttatccttac caacttgctt tcttaagacc
     4921 tggaatcaaa ccttcgttgc ccatttttct taagcaaact ctgcaaattc caaaatctct
     4981 ataaaccgaa tgcggacgcc cacaaatttg gcatcttgta taagctctaa ctttaaattt
     5041 aggcttgcgt gccgcttttg caatcattga ttttttagcc atcttacttt ccttttgtaa
     5101 atggcacacc gataagttct aataactttt gtgcctgttt gtcattttgt gctgttgtaa
     5161 ctatagaaat gttcatacca tgagttctta aaattttatc atactccact tctgggaaca
     5221 tcaactgctc atcaagaccg aagttatagt ttccgcgtcc atcaaaacca tctctactta
     5281 aacctctaaa gtctttcacc cttggcaaag caatagaaat taatttatca agaaaagcat
     5341 acatattttc ttttcttaaa gttaccatta cacccacagg aaaaccttcg cgaactttaa
     5401 atcctgcaac tgatttttta gctttagtaa tcacagcctt ttgtcctgca attaaagaaa
     5461 tagtatctgc aacattttgc aatacttttt gatctttagc caactcacca gcacctacgc
     5521 tgataactac tttttcgatc acagggataa gcataggatt tttaatatca aattctttaa
     5581 ccaatgcagg tttaatgctt tgattatatt tttcttttaa tctcatcatc gcttactcct
     5641 gaacttttgc cacattggaa atatccattg gcatttcttt attgataaaa ccaccatttg
     5701 ggtttttctc actcggctta atagcttttt tagcgatttt acatccttca actaccactt
     5761 taagtgtttt tggatatacc gctaaaactt tacctgtttt acctttatca tcgcctgtga
     5821 taaccttaac gctatcacct tttttgattt ttaatttaac cgccattata atacctccgg
     5881 tgctagtgaa acgattttca taaagccacc atatctaact tctctgccca ctggcccaaa
     5941 gatacgagtt ccgataggct ctcttttgtt gtcaagaata accgcagcat tttcatcaaa
     6001 acgaatcaaa gaaccattat ctctatgaat ttctttttta gttctaacga taaccgcttt
     6061 taccacttga ccttttttaa cttttccatt tggtaaagct tttttaacag atgcaacgat
     6121 tacatcacct acggtagcgt atcttctttt gctaccccct aaaaccttga tacacattaa
     6181 ttcttttgca ccgctattat cagcaactgc aagtcttgta aaactttgaa tcattactca
     6241 actcctgtag ctaatacaga ttttaagcga aatgattttc tttttgaaag tggtctgcat
     6301 tctactgcaa caacagtatc acccacttta acttcatttc tctcatcatg aattagatat
     6361 tttttaaagc gtttaacaat ttttctatat cttggatgaa ccacttttct ttcaaccaaa
     6421 acacttgcgg ttttttcacc agcgatttta acaacaacgc cttgaatttc tcttttaaat
     6481 gccattttct atccttatct taaagcgtta attgctgtat ttattctagc aatgtctttt
     6541 tttacttggc taatctcttt tggattagta agttgcattg tttttagctt ttgttttaaa
     6601 gtgaataaaa gcaccttttt ttcttttagc attgttgcaa gctcagctgc tgttttatct
     6661 ttaatctcag tatatttcat tttggctctc tcttgtaaca aacttagttt taaatggaag
     6721 tttatgcata gctaaagtca atgcttctct tgccatttct tcgcttactc ctgccatttc
     6781 ataaataata cgacctggct tgatattcat tacccattct tcaacagcac ctttaccttt
     6841 acccatacga gtttctaaag gtttttttgt caaaggctta tctgggaaaa ctctaatcca
     6901 agtttttcct tgtcttttaa caaaacgagt taaagcgata cgcgctgctt cgatttggcg
     6961 tgagttaatg cgtcctgctt cagttgcttt taatgcaaat tcaccaaaag taaattctgt
     7021 tccacgatta gcataacctc tgttacgccc tttcatcatt ttgcgatatt tagttctttt
     7081 tggcattaac atgattattt accccttctt gtgcgtcttg gctttttagc tggagcactt
     7141 tcttcagttt tttcaggttg catacctttg tgcaatactt cacctttaaa gatccatact
     7201 ttaaccccta tgtttccata agtagttcta gcttctgcaa aaccataatc aatttttgct
     7261 cttaaagtat gaagtggaac gcgtccttca agataccatt ctgttcttgc catttcagca
     7321 ccgcctaaac gaccagaaac tgaaacttta atccctttag cacctgcttt ttgcgcacct
     7381 tgaattactt ttttcatcgc tcttctaaaa gcaattcttt tttcaagttg agttgcaaca
     7441 ctttcagcag caagttgagc tgaagctcct gcttttcttt cttctttgat attgatattt
     7501 acatctttac cgattaaatc ttgcaattct tttcttaaat tatcaacatc actacctttt
     7561 ttaccgatga tgatacctgg tcttgcggca actacagtaa cgcgaagttt tttagcagtt
     7621 ctttctacta aaatttgact gattcctgcg taataaagtt ttctttttaa gaaagctctg
     7681 attttgtaat cttcaccgat attttctact aaatttgctt tagtcggaaa ccatcttgat
     7741 tcccaatttc tattgattcc tagtcttaga ccaattggat taactttttg tcccattagc
     7801 tttccttttt cgctgttgct tttttagtgc ttgttgtttt tttagctgga gcttttgttg
     7861 tagtagtctt tttagctgct ggagcttttt tagctactgt ttttttctct tcagctttca
     7921 cttctgcttt tgccacttct actaaaatat gtgaagttgg ttttctaata cgacttgcac
     7981 ttcctctagc tcttggtcta aatcttttta ataccgcagc tgcgtcaaca cgacaacttt
     8041 ttacaaccac ttcgtttgct tcaaagccac catttgctac tgcacttgaa attgcatttg
     8101 cgatgtattt tgcaccttta tttggcataa attttaaact agccatagct aattctgcat
     8161 tcatcccctg aacttctcta gcaatcaatc ttgctttagt tggagataat cttatgaatt
     8221 taattaatgc tttactcata tcttatccct tacttaccaa ttttcttttg cacagagcct
     8281 ttatgccctt tgaatgtgcg tgttggagca aattcaccaa gtttataacc gatgtgattt
     8341 tcagtaatat aaaccggaat gaagctttta ccattatgaa cattaaatgt aagtcctatc
     8401 atatcaggag taattgtgct tcttcttgac caagttttaa ttggtttatt atcattagcc
     8461 tttttagcag cgatgacttt tttcattaca tgatcatcaa caaaaggacc tttttttagt
     8521 gatctagcca tcttactttc cttttcttct tgaaattatt agcttatcgc tagccttttt
     8581 acgacgagtt ttcgcacctt tggttggttt accccacgga gttactggat gacggcctga
     8641 atttttctta ccttcacccc caccgtgcgg gtgatctact gggttcattg cagaaccacg
     8701 agtttgcggg cggatacctc tatggcgatt tctacctgct ttaccgatag ttacattagc
     8761 ccattcttca tttccaactt cgccgatact tgccatacat tcagctaaaa cttgtctcat
     8821 ttcgccactt gcaagtctta aaataacata tttttcttct ttacccataa gttgtgcata
     8881 agcacctgcg gaacggatca tttgaccgcc tttacctggt tttaactcaa cattatgaac
     8941 aatagtaccc acaggaatgt ttttaagttt cattgcattg cctggtttaa tatcaagtcc
     9001 gctttcagca gctgaaacta tatcaccaac gcttaatcca cgtggttgaa gaatatatct
     9061 tttttcccca tctttataag caatcaaagc aattctacaa tttctatatg gatcatactc
     9121 gattgcttct actttgcctt ctataccgaa tttacgacgt ttaaaatcaa taattctgta
     9181 aagtttttta gcacccgctt ctttatgacg acttgtaatt cttccatagc tgttacgacc
     9241 cgcgtgtgct ggaagtttaa caagtagtga gcgtacactt ggtttagctg taatatcttc
     9301 agaacttaaa cctgtgatat atcttctact tggagtatat ggtttataag ttttaattgc
     9361 catcttaagc ctccgtattt tctaagctaa caccttcagg tagcttaaca tagaattttt
     9421 tgtaatcgtt tctttgacct aaacgacctc taaaacgctt aacttttcca tccattctta
     9481 atgaattgat gctttttgga gttacaccaa aatactcttt taaaaccgct tttaagcctg
     9541 ttttagtcat ctttggtgaa gtttgaataa ctacgacacc ttgctcttgc aaattcaaac
     9601 ttttttctgt gtaaagtata gtctttatat cagtaatatc tgccataatt atccctcttt
     9661 tgtaatagat tctaacgctg atttttctat gataacagca ttaaatacag atactaaata
     9721 agcatttact tcagttacat caactacata gcaatttgct aaatttctgt aagctaaaag
     9781 tgttttttca tctagtaaat ctttaacgat taaagcatct ttgacgccaa gttttttaat
     9841 cacagcgttt gcatcttttg ttttaccact ttcaatagcc aaagaatcag cagtaaataa
     9901 cgctccctta gctgctttat ctgctaaagc tctttcaagc gccaatcttt tttgtttttt
     9961 atttactttt tggaagtagt ttctttcatt tgttggacca aaagcaaccg caccgcctac
    10021 ccaaacgtta gttcttgttg aacccgctct agcaccgcca cgaccttttt gtctccaagg
    10081 ttttttacca ccaccactta catcacttct acctttagta tgagctgtat ttgctcttaa
    10141 acttgcaagg taagatttta catataagta aagattatgt ggatttactt ccgcatattt
    10201 tgaaggtaaa tcaagttcac ctgctttttc taatttatca tttaaaacaa ctactttact
    10261 cattttgcaa tccttatttt acccatagca ccattataac ctggtactgc acctttaact
    10321 actaaaattt tgttttcagc atcataagat acaacttcgt ttttaacggt cactttagta
    10381 tttccatagt gtcctgccat tttcatacct ggttgaacac gacctggcca ttctctattg
    10441 ccaatagatc cgtggcgtct gtgaaatcta gaaccgtgac ttgctggacc ccctgcgaag
    10501 ttatgtcttt tcataacacc gctataacct ctacctttag tgttaaagct tacttttaaa
    10561 atttttgctt catttaatgg agtttcatct aaatctcctg cttcagtatt tgctacttct
    10621 aaagtcgcaa atctattgta ttctgcagaa agattatact ttttttgttg tcctgcgaca
    10681 catttattac ttgctttacc ttttggatat gctactaaag cctttccgcc ttcaacttca
    10741 catacttttg catttacaac tcttagtaaa gttacagcga tacttggatt agtaattgtt
    10801 ctgctcattc cgattttttc tacaatatat tccatatctt atccttactt acccatagct
    10861 cttacttcaa cgcttacttc tggcgctaaa tcaagcttag ttaaagaatc aactgtatct
    10921 ggagtcgctg ctactatatc tagcatacgt gcgtgaattc ttatttcaaa ctgctcacga
    10981 gaatctttgt taatgtgtgg agattttaaa actgtatagc gtttgatttt agtaggcatt
    11041 ggtatcggac ctctgatatc cgcacctgtt cttttaacag cttctacgat tgctgcaact
    11101 gttctgtcta gtactcgatg gtcataagct tttagcttaa gcctaattct ttccataata
    11161 tttcctttaa aaagaactcg ttagttaaaa actaaccaat ttataaaaat tgaaatgaga
    11221 gtatataaaa tcttgttttc aaagtcaagg aatttgatga aatttttcta ttattttcct
    11281 tttaaaaagg ataaaaatag aatttttaga atttaaaaat tatcattatt ttttaaattt
    11341 ttgcatataa tggtcaatat cttatttcat taaatttcaa aaaatctctt aatttttcat
    11401 attctccatt ttccaaatag cgatgttttc ccgcctttaa cataccaaga tctaaagccc
    11461 caaaagcaac acgcttaaga tccatgactt caagatcaaa atgtccaaaa aagcgtctaa
    11521 gctctctatt tttaccttca tttataacca ctctaagctt agtataacct ccacttgatc
    11581 caaaaatttc aaagtctata aaaggagcaa aactcataga ggtgattttg gtttttgcgt
    11641 gtgcgccttt tttttcattt ttaatctcaa gcccattttg catggcttcg atgacttgtt
    11701 tgctcaccgt acctttaact ttaaggtagt attctctttc taaatcgcta tgcattaaag
    11761 catcagcaat cacaggagaa tctgtaagca aaagcaagcc ctcgcttgca taatccagcc
    11821 tacctacgct aagccaagta ctaaattgtc ttggcaaggt atcgtatata gtttttcttc
    11881 cacgatcgtc ttttttactg acaatttcac ctttttgttt atggtagatt atcacgctaa
    11941 attgcgttct tttttgcact cttttgccct taacaaagac tttatcatca aattgaactt
    12001 catcgcttaa aagggcaatt ttgttgttta tttttactaa gccttgtttg ataagttcat
    12061 cagcttcacg gcgtgaataa cgagtgttat gggatataaa tttattaatt ctcatttgat
    12121 cttccttaaa agggcgtttt tgcccttttt tacattacaa aaatagttgg aactatggtt
    12181 gggtattttt taatctttct aaagatatgt tttcttaaga cttggcggat ttgattttct
    12241 aaaaatcttg gatcattgag tacttcatct ttaacattga tgaaaaattg tcctaaaact
    12301 tcagccatat ctttgctaaa agcatgatcg tgtttgtcag ctactaaccc atagctaaat
    12361 actcttggtt tattgatcag tgtttttgtg gctttgtcaa tttgtgcgat aataaccact
    12421 atgccactat ctgcaagttt ttggcgatct ataactacat catcggcgat ttgtttgttg
    12481 atttgattat ctacaaaaac tttacctgtt tttacggttt ttatgcgttt gacatatttt
    12541 tggcaaagtt ctacttgatc gccatcactc ataagataaa tatttctttc agggataccg
    12601 cacttcatcg ctgtttcttt gtgtttagtg atgtgattgt attctccatg aaccggtaag
    12661 aaaaatttag gtttggtaag ggttagcata agtttttgct cttctatact agcgtgtccg
    12721 cttacatgaa tttcactaaa ttcttgatac gctactttag ctcctgcttt taaaagatag
    12781 tcaagcaccg cagaaacact tgcttcattt cctggtatgg ctttagctga aataatcact
    12841 tgatctgtag gtttgatttt tataaattta tgctcatcag ttgccattct ataaagcgca
    12901 ctcatggttt cgccttgact tcctgtagtt acgataagca cttcattgtc tttatatttg
    12961 cttacttcat cagcatcgat gaaaattttt ctatcaagtt tgatgtagcc taattccata
    13021 gtggtataaa gatttctttc catagaacga ccgatcacac aaacttttct gccgtatttt
    13081 aaaccataag tgatagcctg ataaacacgg tggatattag aactaaaagt actcatgatc
    13141 accctgcctt tggtacgtgc aaaaatttga tcaaaagttg gccctacaga gctttcactt
    13201 tttgtataac cttctttgta cgaatttgta ctatcgctta aaagacataa aaccccttct
    13261 tctccataat gtgccaaacg tcctaagtct gttggatagc catcgattgg ggtttgatca
    13321 attttaaaat cacctgtgtg gataatagtt cctgcttttg ttttgatcgc aagtgctgaa
    13381 gcatcaatga tagaatgtgt gatatgaatc cactctatat caaattcgcc tatctcataa
    13441 acacggcgtt tttctacagg gcgaaaccat ttgcgttctg cttttaagcc atgttcttca
    13501 aatttgtttg aaatcattcc taaagccaaa ggtgtagcgt agataggaaa ttggaattct
    13561 ttaaagaaat aaggcactgc accgatatga tcttcgtgtg catgagtgat cactatacca
    13621 cgaattttat ctttaatttt tcttacatag tcaaaatcag ggatgataat atctacccca
    13681 tgcatagttc catcaggaaa actcatacct atatctacta taattgcatc tttattggtt
    13741 tcaaaaacac tgatatttcc accaatttct cctaaacctc ctaaaggagt gatgcggatt
    13801 ttatgctcgc tagaattatt atattttaaa gggtgtaagc ggttttcatg tgaaacacgg
    13861 ttagcttcta tgcattctgc aagagcgatt tgccaatctt cattacctgt gagttttgaa
    13921 ggaagattgc gatttttctt cttttttttc tcagttttat tttctgagtt ttcagaattt
    13981 tccttgttgg aattttgatc aatttttgga gtatcatttt cattttgcaa agaatcagct
    14041 aatttttttc tacgattttt atatttatag cgtttattgt tttttgaatt tgagttcgga
    14101 ttttgttcgt ttttatttat ctctttgttt tcgtccatat tcatccttta atttgtcata
    14161 aattttaagg tataaatcaa cgcaaatttc atgtggtctg atgttttctt ttaagccaag
    14221 agtgcttaaa acttctaaaa cttttgcttt atatgttttt aaatttccta agagttgttt
    14281 tctaggagct ttaaaacaat cttttagaaa atttttgaaa ttttctattt cgcaaagttc
    14341 atcaaaatcc ttagttttaa tcaaactcat caccgctgac ataacttttg gtggaggatt
    14401 aaaacattgt ggatcaacat caaaaagtat ttttctttcg caaatcattg cacttaaaac
    14461 acctaaggaa gaaaactcac tatttccttc tttagcgcag aatttttcag ccatttccct
    14521 ttgtaccatt acaataagcc ctagacaatt tttatcttct aaagctttta atataatgtg
    14581 acttgcaaca taataaggca aatttgcaac caaaaaatat ggtttttcat caagactagg
    14641 attaaaagct tcgcttgcgt cttgatggat caagttaaat tttccacatt caagttcttt
    14701 ttgaaatttc ttttttaaaa taggtatgag atcattatcg atttcataag cttttacttg
    14761 agaaattttt aaaagttctt gcgttaaatc acctaagcca ggcccaatct caatgatatt
    14821 gttcatctct ttgggtatgg cttggatgat ttttgctaat acgcttttat cgattaaaaa
    14881 attttgtccg tattgttttt ttgctttaac cataagaaat aattttatct aaaaattctt
    14941 aattaagtct ttttaggtag aattattttt gtaaaatttc ataaggatca aaatgattgt
    15001 ttgtgcgggt ggaaatgaaa atttttcttt tgcaaaagct ataggcatag gtttggttga
    15061 gtcagctttt catttgagtc aactttactt caaagaaaaa ccatcaaaac ttatatttat
    15121 aggaacttgt gggctttatg ataagggaga gattttagaa atttatagaa gttcgcacgc
    15181 ttttaatgta gaattttcta aaatttcaca tgcattttat actcctgcaa aatatgaaat
    15241 ttgcttagaa aaagaaaatg tttctcgtga aacaataaaa atcaattctt caaattatat
    15301 ttgtcaaaat tcaaaagcag caaaagaatt ttcaaaatta ggtttttttg cagaaaatat
    15361 ggaagccttt tctgttttga gcgtagctaa aaatttaaat attgatgcag agtgtatttt
    15421 gtgtgcaaca aatttttgca atgaaaacgc tcacgaagat tttataaaaa atcatcaaaa
    15481 ggcaaaagaa aaattagaag aatacttaaa aaaatatcat tatatttaaa aattcaaaaa
    15541 aggaaaataa ttttgaaaga gcttgttaat attttagatt ttttacctga agaattagga
    15601 gaaaaaatca aaccgatgtt tcgcgtgaaa caaatttatc aatggattta tcaaaaatac
    15661 gccaataatt tttccgatat gtcaaattta ccaaaagatc tacgtttaga acttgcgcaa
    15721 aattttcatt tctctcccgt aaaatgtgtt aaaaatgagc aaagtaaaga tggaagtata
    15781 aaatatcttt ttgaactcgt tgatggttta aggatagaaa gtgtgctttt gcctatgaaa
    15841 gaagaaaaaa tagacgcaga aggcaaaaga atttctcatg cgagatatac tatctgtgtt
    15901 tcttctcaag taggttgtaa aagtggatgt agtttttgtc ttactgccaa gggtggtttg
    15961 aaaagaaatt taagtgcagg tgagatagtc ggacaaattt tatggatcaa aaaacaaaac
    16021 aatatccctt atgaacgccg tgtaaatata gtatatatgg gtatgggcga gcctttggat
    16081 aatcttaaaa atgtttctaa agcggtaaaa attttagcgc aaaatgaggg acttgctata
    16141 agtcctcgcc gtcaaaccat cagtactagc ggtttggcaa aacaaatcaa agaattaggt
    16201 caaatgaatt taggtgtttt acttgctata tcattgcatg cggttaatga tgagcttcga
    16261 accgaactta tgtctatcaa taaagcttat aatatcgctg cgattatgga tgcggtgcgt
    16321 gaatttccta tagatcaaag aaaaagagtg atgtttgaat atcttttaat tgatggtatc
    16381 aatgataagc ttgaacacgc taaagaatta gtcaagcttt taaatggtat taaagccaaa
    16441 gtgaatttaa tactctttaa tccacatgaa ggaggtttat ataaacgccc tagtttagaa
    16501 aacgcgatta aatttcaaga tttactcagc aataaaggtg taacttgtac tataagagaa
    16561 agtaaagggc ttgatatctc agctgcttgt ggacagctta aagaaagggc aaaagaacaa
    16621 tgacaatgct agatattttt gaaatcattt ttataacagc tgttgtaatt ataggttttg
    16681 gtggaattgt ttttgtagta acaaaagaaa aaaaataatt attacactta atggtgtcaa
    16741 gggggagact tgaactcccg acctccggct tatgagacca gcgctctaac cagctgagct
    16801 accctgacta aaaataaaaa tataa
//
LOCUS       DAPIWV010000028        16798 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.029, whole genome shotgun sequence.
ACCESSION   DAPIWV010000028 DAPIWV010000000
VERSION     DAPIWV010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16798
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.029"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            111..3074
                     /gene="cas9"
                     /locus_tag="RJ272_000653"
     CDS             111..3074
                     /gene="cas9"
                     /locus_tag="RJ272_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790896.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HDV7381768.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTS
                     SIVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKNELR"
     gene            3061..3951
                     /gene="cas1"
                     /locus_tag="RJ272_000654"
     CDS             3061..3951
                     /gene="cas1"
                     /locus_tag="RJ272_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HDV7381769.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQASLSSALFNAFARHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQINVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            3944..4375
                     /gene="cas2"
                     /locus_tag="RJ272_000655"
     CDS             3944..4375
                     /gene="cas2"
                     /locus_tag="RJ272_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDV7381770.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF"
     gene            complement(4873..6063)
                     /locus_tag="RJ272_000656"
     CDS             complement(4873..6063)
                     /locus_tag="RJ272_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7381771.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGITPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENICIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDI
                     IFMP"
     gene            complement(6067..6513)
                     /locus_tag="RJ272_000657"
     CDS             complement(6067..6513)
                     /locus_tag="RJ272_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HDV7381772.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYKPLLKKWFNEWQKRVDFDGITLLFAHSIGDVAVHKSSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(6514..6735)
                     /locus_tag="RJ272_000658"
     CDS             complement(6514..6735)
                     /locus_tag="RJ272_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HDV7381773.1"
                     /translation="MVKVEFLGPINKENLELKVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(6737..8278)
                     /gene="cueO"
                     /locus_tag="RJ272_000659"
     CDS             complement(6737..8278)
                     /gene="cueO"
                     /locus_tag="RJ272_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HDV7381774.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNKSKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFRLESAYYDRDK
                     MMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            8402..9550
                     /gene="nspC"
                     /locus_tag="RJ272_000660"
     CDS             8402..9550
                     /gene="nspC"
                     /locus_tag="RJ272_000660"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HDV7381775.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN"
     gene            9854..10567
                     /locus_tag="RJ272_000661"
     CDS             9854..10567
                     /locus_tag="RJ272_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDV7381776.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            10542..10733
                     /locus_tag="RJ272_000662"
     CDS             10542..10733
                     /locus_tag="RJ272_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HDV7381777.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWEKYYIKAE"
     gene            10733..11275
                     /locus_tag="RJ272_000663"
     CDS             10733..11275
                     /locus_tag="RJ272_000663"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HDV7381778.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            11324..13537
                     /locus_tag="RJ272_000664"
     CDS             11324..13537
                     /locus_tag="RJ272_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HDV7381779.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            13534..14175
                     /locus_tag="RJ272_000665"
     CDS             13534..14175
                     /locus_tag="RJ272_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7381780.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            14172..15104
                     /locus_tag="RJ272_000666"
     CDS             14172..15104
                     /locus_tag="RJ272_000666"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDV7381781.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            15271..16053
                     /gene="fdhD"
                     /locus_tag="RJ272_000667"
     CDS             15271..16053
                     /gene="fdhD"
                     /locus_tag="RJ272_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDV7381782.1"
                     /translation="MDPLFTTQILKYKGNESFTCDDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKGEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            16046..16783
                     /locus_tag="RJ272_000668"
     CDS             16046..16783
                     /locus_tag="RJ272_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HDV7381783.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         5953 a         2244 c         3062 g         5539 t
ORIGIN      
        1 attataaaat taacatatat agtttggtta ctgaaaagtt tatgtttgtt taaaaaatga
       61 tttttgtatt ataattatac acaaatcata aatattaaaa aggatctagt gtggcaagaa
      121 ttttggcatt tgatatagga ataagctcta ttggctgggc atttagtgaa aatgatgagt
      181 taaaagattg tggagttagg atttttacaa aggctgaaaa tcccaaaaca ggagaatcct
      241 tagccttgcc aagacgcctt gcaagaagtg ctagaaaacg ccttgctaga cgcaaagcaa
      301 ggctaaatca cttaaaacat ttaatcgcaa atgaatttaa gttaaattac gaagattatc
      361 aaagctttga tgaaagttta gccaaggctt ataaaggatc tttaattagc ccttatgagt
      421 taagatttag agctttaaac gagcttttaa gtaagcaaga ttttgcaaga gtgattttac
      481 atattgcaaa aaggcgtggc tatgatgata ttaaaaatag tgatgataaa gaaaaaggtg
      541 cgattttaaa agctatcaag caaaatgaag aaaaactagc aaattatcaa agtgtgggcg
      601 agtatcttta taaagagtat tttcaaaaat tcaaagaaaa ttccaaagaa tttacaaatg
      661 ttagaaataa aaaagaaagt tatgaacgct gcatagcgca aagtttttta aaagatgaat
      721 taaagcttat ttttaaaaaa caaagagaat ttggcttttc tttttcaaaa aaatttgaag
      781 aagaggtgct tagtgtagca ttttataaaa gggctttaaa agatttttct catttggtgg
      841 gaaattgtag tttttttacc gatgaaaaaa gagcgccaaa aaattcgccc ttagctttta
      901 tgtttgtagc acttacaaga attatcaatc ttttaaacaa tcttaaaaat actgaaggaa
      961 ttttatatac aaaagatgat ttaaacgccc ttttgaatga agttttaaaa aacggcactc
     1021 taacttataa acaaacaaaa aagcttttgg gcttaagcga tgattatgaa tttaaagggg
     1081 aaaaaggaac ttattttatt gagtttaaaa aatataaaga atttataaaa gccctaggtg
     1141 atcatagttt aagccaagat gatttaaatg aaatagcaaa agatattacc cttataaaag
     1201 atgagattaa gcttaaaaag gctttagcaa aatatgattt aaatcaaaat caaattgata
     1261 gtttaagcaa attggaattt aaagaccatt taaatataag ttttaaagcc ttaaaactta
     1321 tcactccttt aatgcttgaa ggtaaaaaat acgatgaagc ttgtaatgag cttaatttaa
     1381 aagtagcaat caatgaagat aaaaaagatt ttttacccgc atttaatgaa acttattata
     1441 aagatgaggt aactaatcct gtggttttaa gagcgattaa agaatacaga aaggtcttaa
     1501 atgctttact taaaaaatac ggcaaagtgc ataaaataaa cattgaatta gcaagagaag
     1561 taggtaaaaa ttacagccaa agagctaaaa tagaaaaaga gcaaaatgaa aactacaagg
     1621 ccaaaaaaga cgccgaactt gaatgtgaaa aactaggctt aaaaataaat agcaaaaata
     1681 ttttaaaatt aagattattt aaagaacaaa aagaattttg tgcttatagt ggagaaaaga
     1741 ttaaaattag tgatttgcaa gatgaaaaaa tgcttgaaat tgatcacatt tacccttatt
     1801 ctagaagttt tgatgattct tatatgaata aagttttagt ttttaccaag caaaatcaag
     1861 aaaaacttaa tcaaaccccc tttgaagcct ttggcaatga tagtgcaaaa tggcagaaaa
     1921 ttgaagtttt agcaaaaaat ttacctacta aaaagcaaaa aagaatttta gataaaaatt
     1981 acaaagacaa agagcaaaaa gactttaaag atagaaatct aaacgatact cgctacatcg
     2041 caaggcttgt tttaaactac actaaagatt atttagattt tttaccttta agcgatgatg
     2101 aaaatacaaa gttaaacgac acacaaaaag gctcaaaagt gcatgtagaa gcaaaaagcg
     2161 gtatgcttac atcggcttta agacacactt ggggctttag cgctaaggat agaaataacc
     2221 atcttcatca cgccatcgat gcagtaatta ttgcttatgc aaacaactct atcgtaaagg
     2281 ctttttcaga ttttaaaaaa gagcaagaaa gcaacagtgc agaactttat gcaaaaaaaa
     2341 ttagtgaatt agattataaa aacaaaagga agttttttga gccttttagt ggttttaggc
     2401 aaaaggtttt agataaaatt gatgaaattt ttgtctcaaa acctgagaga aaaaagccaa
     2461 gcggagcctt acatgaagaa acatttagaa aagaagaaga attctatcaa tcatacggcg
     2521 gaaaagaagg agttttaaaa gccctagagc ttggtaaaat ccgcaaagta aatggtaaaa
     2581 ttgttaaaaa tggcgatatg tttagagtgg atatttttaa acacaaaaag acaaataaat
     2641 tttatgctgt gccaatttat actatggatt ttgctttaaa agtattacca aataaagctg
     2701 tagcacgaag taaaaaaggt gagataaaag actggatttt aatggatgaa aattatgagt
     2761 tttgcttttc tttatacaaa gatagtttga ttttaattca aactaaagat atgcaagagc
     2821 cagaacttgt ttattttaat gcttttacaa gctctattgt tagtttgatt gtttcaaaac
     2881 acgataataa atttgaaacg ctaagcaaaa atcaaaaaat attgtttaaa aatgcaaatg
     2941 aaaaagaagt aatcgcaaaa agcataggaa ttcaaaatct aaaagtattt gaaaaataca
     3001 tagtttcagc acttggagaa gtgacaaagg ctgagtttag acaaagagaa gattttaaaa
     3061 atgagttacg atgaagcttt taaaacactg cttattagct ctaatgccaa gctaaattta
     3121 gagctaaatc atcttgtgat taagcaagat gaaaatatag ccaaattgtt tttaaaagat
     3181 ataaatatca tcgttttaga aagcttacaa gcaagcctta gttccgcact ttttaatgcc
     3241 tttgcaaggc ataaaatcat cttgctaacc tgcgatgaaa ctcatagtat aaatggtatt
     3301 tttactcctt ttttagggca ttttcaaagt gcaaaaatcg caaaagaaca aataaatgta
     3361 agtgctcaaa aaaaggctat tttatggcaa aaaatcatta aaaataaaat cctaaatcaa
     3421 gcctttgttt tgaaaaaaca caataaaata gagcaaagca atgagcttat aaatttggcc
     3481 aaaaaagtaa gcttaaatga tagtaaaaat atcgaagctg ttgcagcggc gctttatttt
     3541 aaaactttgt ttgggacttc tttttcaaga gatgagcttt gctttgaaaa ttctgcttta
     3601 aattatggct atgcaatcat tagggcttgt attattagag cagtttgtat aagtgggctt
     3661 ttgccttggc ttggcattaa gcacgataat atttataatt cttttgcgct ttgtgatgat
     3721 ttgatagaag tgtttagggc tagtgttgat gattgtgttt taaagcttaa gggtgaaagt
     3781 gagtttttaa gcaaagatga caaaagagcg ttgattggca atttacaaag caaaatcaat
     3841 tttgatgggc aaaattatcc tttaaacaga gcgataaatc attatgtggc aaattttaaa
     3901 aatgctttat tgtatgaaga tgaactaaag atagtgaaat ttgatgattg aagataaatt
     3961 tatgcgcgtg cttttgatgt ttgatgtacc tactaaaagt aaaaaagagc aaaaactagc
     4021 aagtaaattt agaaacaatc ttataaaatt aggttatttt atgctgcaat ttagcgttta
     4081 tatgcgtatt tgcaagggtt taagttctgc aaaaagttct attgaaaatg taaaaaagat
     4141 tttgccacct tatggaaatg taagggcttt aatcatcact gaaaagcaat ttgataaaat
     4201 ggagcttttg cttggtggca tagtttttaa tgaaaaagtt aataacgaaa ccaatttaac
     4261 actttttgat atagatagtc atggagaatt taaatacaaa aattcaaata atgaagaaat
     4321 acaactaaac aaaaaacaag aaaaatatca tcagcaaaat ttatttgaat tttaaaagcg
     4381 gttttagggg attgtaaccc cgcagagtcc cgcaaactct ttattttagt ccctttttaa
     4441 atttcttatg agattatagc ataatttttg ctatttttca tgaaaaaacc ccgaaatttt
     4501 cattatctgg taaatatcta ttttaccata aagaaattta aaaagggact aaaataccac
     4561 tcttgactat cttttttact cattaatttt accataaaga aatttaaaaa gggactaaaa
     4621 tgtatatcct acatctccgc tttttaaacc aattttacca taaagaaatt taaaaaggga
     4681 ctaaaattaa agctatcttt aaactttttt ttcatttatt ttaccataaa gaaatttaaa
     4741 aagggactaa aataaaccct agtggattga aactccgcta gggctaatta ctccactaaa
     4801 aggaggttgc gaatttgaaa cttattgaaa tttagggttg attaaaatcg aaataaaatt
     4861 atttaaataa ttttaaggca taaagataat atccactaaa ctttcatttt ctaaaatttc
     4921 acattctttt ggcgccacca taagggcagc tttattgtta agattgttta taatcgcact
     4981 agagccttct tttttgcctt caagattggc taaaatgcgt ccattttcaa actttatgtt
     5041 acaagcgaca aattccaaat aaggtgtttt tttcttgtaa cttccttgta aaaaggcttt
     5101 gcaaatatag tctttaggtt gaagtaacca agagtttaaa atctctcttg cgtaaagatt
     5161 aaacattacc atagccgagt aaggaaaacc tggtaaggcg atgatgaatt tttcattagc
     5221 cttagctatt ttgatatgtc tacctggttt tatgtcggct ttatcgatga tgatttcgta
     5281 ttctttgatg gcttttttta aaaagtcaaa atctcccata gaaaccccgc ccgttgtaac
     5341 caaaatatca caactttgca aagcactttc aagggtggaa aaagtggctt tctcatcatc
     5401 ttttaaaaga ggaaaaaccc ttgtatcgca atttaaattt ttagctaaat tagctatggc
     5461 gatatgattt gaagagcgga tttgagcagg attttccaag gcttctccta gatctttgat
     5521 ctcacttcca ctacttaaaa cccctacaat aggctttata aacacactaa tgtgaaaaaa
     5581 tccaagttca gctaaaagag ctatctcgct ataatttaac tttgtgcctt ttttgagtaa
     5641 aatttcatct tttttatagt tttctcctac cgcacgcacg gcaaaagctt ggggaacttt
     5701 tttttctata aaaagagtat cattttctat gcatatattt tcaacaggga ctaaagtatc
     5761 gcttccttcg ctcatgagtg agcctgtaaa ggtttttaca caagtaccat tttgcacgct
     5821 aaattgtggc atagtacccg caggtgtgat acctaaaatt tttaaaggct tatcttgatc
     5881 ttcaaatttg atcgcataac catccatagc cgaagttgga aattcgggct gatttttagg
     5941 ggcttttatg tcttgagcta aaatgcgtcc taaacactct gtaagagcta ttttttcaat
     6001 cttttcataa gttttaatat gagaatgtaa aatttttaaa ctttcttcat aagacattaa
     6061 cattttttat ccttttaaaa gtcctgcacc gcaaagtttg gttgatcttt ctttggcata
     6121 aattctttct ttgtttatca catcatactt ccaaatgggc gcacttgctt taaaatcttc
     6181 aacaaattca ttaagaagtt taagtcctaa ttttctttgt ttgcttaaaa ttcctgcaaa
     6241 ataagagctt ttatgaaccg ccacatcgcc tatagagtga gcaaaaagca aggtaatacc
     6301 atcaaaatct actctttttt gccactcatt aaaccatttt tttaaaagcg gtttataaat
     6361 atcaaaacta agtgcctcaa tgcctccttc ttcacgcaca ataccacaaa aagtcagcaa
     6421 agcaccgcag tttttatcct tggcaaattc ataccattgg ctataaattt taggaatatc
     6481 taaagaacct tgatagagtg taaaatgttt catttagccc ccacaaactg gcggtaaaag
     6541 tgctatttta tcaccatctt ttaacttagt gttttcatca aaaatgattt catcatttaa
     6601 agataccgca caaagttcta gccattcttt taaactctca tctttttgca aaatttcttt
     6661 taattctttt aaatttttta ccttaagttc taaattttct ttatttatgg ggcctaaaaa
     6721 ttccactttt accattttat tcctttactt ctaaatttcc catcattcct aaatcttcat
     6781 gttctaaaat atggcaatga tacattctaa gtcctttaaa atcttgtttc attctaagtc
     6841 ttaattcttc attaggacgc acatttatag tatctctgaa ggctctaaat tcggcttttt
     6901 gaactttgcc attgagtttt gatgagatga gttcaaattg cgtgccgtgt atgtggaaag
     6961 gatgatccat gtgagattta tttatcacta tccagtcttc aactactcca agcttggagc
     7021 ttaaatcaat gcgttttaaa tcatagcttt tgccattgat taaaaacata gacgcaagag
     7081 cgatttttaa ttcattttca ctttttccca tcattccatg catttgcata tgatcttcac
     7141 tcatgattat ttctttaaat tccttaggtt cttctaaagg tttgaaaatt tttaaatttt
     7201 ttggaagttc taatttttct ttttttaggc taatactagc taaaaatagg gtattagatt
     7261 cttcttttac catcattttg tccctatcat aataagcact ttctagtcta aattccccat
     7321 cttttggagc gtcgattaaa acttctacac gagaagcagg acttaagaaa agttcttctt
     7381 tataaatagc tttttctata agtccaccat cagtaccaac aagtataaac ttagctcctt
     7441 gtatgcgtaa atttaaatat cttgctgcag tagcattata aatgcgtatg cgttcgtttg
     7501 tggcgagttt gattttaggt ttaaattgtc cattgatgag tacaaattct ccttctctac
     7561 catttagcca atcatttagg ttgttgtttg gaatttgagc gttttcatca agacgcaaat
     7621 cgctaatcat caaatctctt tcttttaaat gacttaaagc atcttttttt gctttgatca
     7681 caaaagcccc tgctaaaccc ataaaaactt gtttagaagc cgtataatga ggatgtggat
     7741 gataccagta agttcctgcg ctatcttgag gaatttcaaa acgatatatt ctttcttctc
     7801 ctgctaagat aggatcatgt gggcttccat cttgatcagg tggcacagga acgccatgcc
     7861 aatgtatagt tgtagcttct ttgagtttgt ttttgactaa aatttcaagt ttatctcctt
     7921 caaaaacttc tatttttgga gcaggcacga ggccattgta agtataaaat aaggtttttt
     7981 tacctttgat aagctctata tgattttctt tgatttctag ggtagcacga aaaatatttt
     8041 tttctttact tttatttttg agtaaaggca aggcttttaa aatttctcct tgggggaatt
     8101 gttttggatc taaaagcttt aaattttttg gagcaaagtt tataaaagaa gtatctaagt
     8161 catgatttat agaatgattt ttatgcatgg agtgcatatc gtgcatagga tttgcatagg
     8221 ctacacccat acttgctaga gtaagtgcat taaattttaa aaaatttctt ctattcatta
     8281 gtttttcctt ttgcttgatt ttttgtatta tagtcattat ttttttaact ttagtaaata
     8341 tttattttga aaatttggtt taattttgtt atgattttag caatttaatc aaggaaaaat
     8401 aatgttttat gaaaaaattc aaactccagc ttatatttta gaagaagata aattaagaaa
     8461 aaattgtgag cttttagcaa gtgttggtga aaaaagtggt gctaaagtgc ttttagcttt
     8521 aaaaggtttt gctttttcag gagcgatgaa aattgttgga gaatacctaa aaggttgtac
     8581 ttgtagcgga ctttgggaag caaaatttgc taaagaatac atggataaag aaattcatac
     8641 ttattcacct gcttttaaag aagatgaaat aggtgaaata gccagtttat ctcatcatat
     8701 agtgtttaac tctttagccc aatttcataa atttcaagct aaaacacaaa aaaattcctt
     8761 aggtcttcgt tgtaatgttg aattttctct agccccaaaa gaactttaca atccttgtgg
     8821 aagatactca agacttggaa ttcgtgctaa agattttgaa aatgtggatt taaatgctat
     8881 agaaggactt cattttcacg cactttgtga agaaagtgct gatgctttag aagcagtttt
     8941 aaaggctttt gaagagaaat ttggcaaatg gatagggcaa atgaaatggg tgaattttgg
     9001 aggaggacat cacatcacta aaaaaggcta tgatgttgaa aaacttattg ctttgtgtaa
     9061 aaatttcagt gataaatatg gcgtgcaagt ttatcttgaa ccaggcgaag cggtgggttg
     9121 gcaaacagga aatttggtgg ctagtgtagt agatatcata gaaaatgaaa aacaaattgc
     9181 tattttagat acttcaagcg aagcacatat gccagatact atcatcatgc cttatacaag
     9241 tgaagtttta aatgctagaa ttttggccac aagagaaaat gaaaaaattt cagacttaaa
     9301 agaaagcgaa ttttcctatt tgcttactgg aaatacttgt ttagcaggtg atgtaatggg
     9361 agaatacgcc tttgataaaa agcttaaaat cggcgataaa attgtttttt tagatcaaat
     9421 tcattacacc attgtgaaaa acacaacttt taatggtata agacttccaa atctcatgct
     9481 tttagaccgt aaaaatgaac ttcaaatgat aagagaattt tcttataagg attattcttt
     9541 aagaaattag tattatttat aatttgcata aaatgttaat tttactcgga agagaattaa
     9601 agatgtaaat tttatgcaaa gtattttatt ttttcaaata taaaatcaac tcaaatatct
     9661 aattttaaat actttagtat gattttttaa tattttaaat ccttgtggaa ttttattgaa
     9721 attcagtgat ttttaaatca aatagtatta agataaatcg atttaaaaat cggctttaaa
     9781 atgaatatta ggtatatttt gcataatatt cattcaagca aaatttaaag ctatttttga
     9841 aaattttgaa tgcatgggag ctttaatgga tttggaaaaa ttaagattag ctagaagtct
     9901 ttattatcaa tgtctaggag agctttttgt tttttcattt tctgaagaaa gattgtcaaa
     9961 attacaagag tatttaaaga caatgcaaga atgtttattt gatgaaaatt taaaatcaaa
    10021 ttttgatatc ttgcttaagc atttagatga tgaaaattct atacaagcat tttttaaaga
    10081 atatgatttg ctttttttaa gtcttaaaaa tagcattcca acgacttttt cttacataga
    10141 agaaggtttt gaaaattcaa atcctttact ttgcgtgcgt caaattttag tcaaaagtaa
    10201 aataagacgc aatgaaaaat tttttaaaga aagtgaagat agtgttggat tttgtttatt
    10261 gttgatgagt gaatttttaa ggcaaaatga agatgattta gccaaagagc tttttgaaaa
    10321 agtgatcaat aaaagcattg atgagttttt aggcgatgtt ttcatgaata aaaatgcgaa
    10381 tttatataag gaaattgcaa gtattgcatc ggcttttatg gaatttgaaa gactttgctt
    10441 tgaagtggaa aaacctgcaa aaataaattc taaaaaagtg caaaacgatc tatcgcgttc
    10501 agaattttta agaagagaag caaataaaca aaggaggact cgtgaaaaat cgcagggaat
    10561 ttcttaaaaa atccgctttt gccttagggg ctgctggagt gcttggtagc acgactttag
    10621 ctctagctaa agatgaagaa agaaaagatt tggttaaagg taaaagtaag aaaaaagaag
    10681 tgctttttca aagaagtgct aattgggaaa aatattatat aaaggctgag taatgtcaag
    10741 tgtaggtgaa aatatcaagc ttacgcgtcg ttcttttctt aaaatggcag cactttcaag
    10801 cctagcaaca ccgttgcttg ctagaagtga aactttaaga gaagcgagtg ctgatgagct
    10861 taaagaagcg tatgaaggta gtaaaaaagt aaaaacagtt tgtacagcct gttctgtagg
    10921 ctgtgggatt attgcagaag tgcaaaatgg tgtttgggtg cgtcaagaaa ttgctcaaga
    10981 tcatcctgtg agttcaggtg gacattgctg caagggatct gatatgatcg atatggtgcg
    11041 ttcacatgtg cgtttaaaat atcccatgaa aaaagaaaat ggagaatgga aacgcataag
    11101 ttatgagcaa gctttaagtg agatcggaga aaaactagct gcttatcgta aagaaaatcc
    11161 tgaaagtgtt atgtttttag gttctgcaaa acttaataat gaacaagctt attatataag
    11221 aaaatttgca gcattttttg gaacgaacaa tgtagatcat caagctagaa tttgacacag
    11281 cgcaacagtc gccggtgtgg cgaatacatt tggttatggc gctatgacaa accatcttgg
    11341 agacattcaa agaagtaaat gtatcattat cattggagca aatccagcgg taaatcaccc
    11401 tgtgggtttt agacatttct taaaagcaaa agaaaaaggt gcaaagctta ttgttgtaga
    11461 tcctagattt acaaaaagtg cagcaaaagc ggatatttat gcaagaattc gtccaggaac
    11521 tgacattgct ttcatgtatg gaatgttaaa aatcattttt gatgaaggct tggaagatac
    11581 aaaatatctt gatgaaagag tttttggaat tgataaaatt cgtgaagaag cagcaaaatg
    11641 gacagctgaa gaagtggaaa atgttacagg gatctctaaa gaacttttgg tgcaaatcac
    11701 tcacgaagta gctaaaaaca aaccaactac gcttatttgg gctatgggtt taactcaaca
    11761 tactgtagga acttcaaata cacgtttagc acctattgtg caaatggtac ttggaaatat
    11821 aggtaaattt ggtggtggag ttaatatctt acgcggacac gataatgttc aaggtgcttc
    11881 agatatggct tgtttgagcg aaaatttacc aggttattat cctttaaatg aagcgacttg
    11941 gagatactat gccaaaattt ggggtgtgga ttatgagtgg cttttaggaa attttgtaag
    12001 caaagattgg atgcataaaa ctgggctttc acttgctaga tggtgggcag cggctttaaa
    12061 tggaaaagat ggaaatgatg ctatcgataa tgcaggaacg cctttaaaag ctttagtagt
    12121 tatgggaaat ggtatcactt cgactgcaca acaagtaaaa gttaaagaag gtttggaagc
    12181 tttagagctt ttagttttag ctgatccttt tgtaaatgaa gcagggatta ttgcagaaag
    12241 aaaagatgga atttatcttt tacctgcagc aacacagttt gaaacaagcg gaagtgtaac
    12301 agcaacaaat cgtagcggac aatggagatt taaagttgta gatccacttt atgaaagcat
    12361 ggaagatcaa gaaattttat ttgagcttgc taaaaaatta ggcttttatg aagactttac
    12421 taagacttta cgcgatgaaa aaggtgagat tgtttggcct gaaaatgcaa caagagaaat
    12481 tgcaaaagcg gttagaagta tagggcttaa tggttggagt cctgaaaggc ttaaaaagca
    12541 tactttatac tgggataaat ttgatgaggt aactttagaa ggaaaagacg aagttgctgg
    12601 cgagtactac gggcttcctt ggccttgttg gagtgataag catccaggtt ctcctgtgct
    12661 ttataatacc gacattgaag tcgcaaaagg tggtatgggc tttagaaaca attttggact
    12721 tgagtatgaa ggagagagtt tacttgctaa aaatgcgcct ttaaattcac ctattgatac
    12781 aggttatcca caaattacta aagataatat agaaaaagtt ttaggcatta ctttaagtgc
    12841 ccaagaaaaa gaaaaaatgg gatcaacttg gtcttatgat gatagcaata tcatagcaac
    12901 taaatgtata gaaaaaggca tagttcctta tggaaatgct aaagctagag ctgtagtttg
    12961 gacttttaaa gataaaattc cactccaccg tgagccttta cattctccaa gaaacgattt
    13021 ggtgcaaaaa tatccaagtt ttgaagatca aaaagcgctt taccgcgtgg atactaaatt
    13081 tgtgtctgtg caacaagcta aggattattc taaagaattc ccacttaatc ttgttactgc
    13141 aagacttgtg aatttaaatg gtgcaggtat ggaaaataga gcatctatgt atctaacgcg
    13201 tttaacacct gaaatgtttt gtgagatcaa tcctgaatta gcaaaagagc aagacattaa
    13261 agcaggagat atgatttggg tacattctcc agaaggtact aaaattcatg taagagtgaa
    13321 ggttaatcca ggtgtagcaa aagatatgat tttcttgcct ttccatttta caggagttat
    13381 gcaaggcgtg gatttaacgc acaatttccc agaaggaact aagccttatg caagcggaga
    13441 aagtgctaat acggtaacaa attatggtta tgatatcatg tgtcagattc cagagactaa
    13501 aggtgggctt tgtagaatca gtaaggatgg aaaatgagta aggtaaattt tgcaaattta
    13561 gaaaaagaac gcttgaaatt cttttgtgat aatgagcgtt gtattgattg taatggttgt
    13621 gcggtagctt gtgatgaagc acatgagctt cctattcata ttcgccgccg ccgtgtgatt
    13681 actttaaatg aaggaattca aggaaaagaa gtttcaactt ctatttcttg tatgcattgt
    13741 gatgatgctc cttgttctat cgtttgtcct gtggattgtt tttacatccg tgctgatggt
    13801 attgttttac acgataaaga aatttgcata ggttgtggat attgtcttta tgcttgtcct
    13861 tttggtgcac cacaatttcc aaaagatagt gtttttggaa ataaaggcat tatggataaa
    13921 tgtactatgt gtgcaggtgg ccctgaagca acgaattcag aaaaagaaag agaactttat
    13981 ggtcaaaatc gtattgcaga agggaaagtt cctgtatgtg ctgcgatgtg ttcgacaaaa
    14041 gcacttttag taggtgaaag ttctaaaata gaagagattt atcataatag acttatgaat
    14101 agaaattatg gcattccaaa tccttcggaa agtttggagt ggaagattgc ttacacagga
    14161 aaggaacgct tatgagaaaa gtatttgtaa cgcttttatt aagcgtagtg agtttatttg
    14221 cttatggtag cgagagaatg ggacaagata ctcaaatttg ggattttcat cgtattacaa
    14281 atatcccaaa ttatgatact tttggcaaac tttggacaac tttgcaaggt gaatatatag
    14341 ctactatagc tttaatcgct gttattgcgg tattatctgc atttgctttg cattatatgg
    14401 ttataggacc taagcaattt tcacacgatg gaaagaaaat ttatgctttt acattatttg
    14461 aaagactttt tcattttatc gcggcaattt cttgggtgat tttagtgcca actggttttg
    14521 tgatgatgtt tggagaagtt tttgggggtg gagtttttgt aagggtttgt aaaaatttac
    14581 acgcttttgc aacgattttg tttatcatct ctataatccc tatgttttta tgctggatta
    14641 aaagaatgct tcctgcaagt tatgatatca gatggatgat gatagtaggt ggttatttaa
    14701 gtaaaatcaa acgtcctgta cctgcaggta agtttaattt tggtcaaaaa tcttggtatt
    14761 atatagctgt atttggtgga tttttgatga taattacagg tggatttatg tattttcttg
    14821 attttaattc cacagcaatt caaggtcttt ttggtttaac tcaaattgaa cttttgagaa
    14881 tttcagctat agtgcataat ttcttgggta tagtgtgtgc agtgtttttt ggtgtgcata
    14941 tttatatggc agtatttgca atcaaaggca gtatccattc tatgattagt ggttataaag
    15001 aagaagaaga ggtttatatt ttgcattctt attggtataa agaattaagc aataaaaagc
    15061 aaattgaacc tagtttttct tatgatccta atgtaaaaat ttaatcttta accgctatgt
    15121 tattgcatag cggtagtttt aagctttttt gaaataaata gaacgaattt tattttataa
    15181 gttgaatcta aaatctattt ttccatatgt gaatttgtta tttatgtttt tttgatataa
    15241 tattatttaa agataattaa aggataaggt atggatccgt tatttacaac tcaaatttta
    15301 aaatataaag gcaatgaatc ttttacatgt gatgatactt tagtgcgtga aattaagctt
    15361 gaaattttta ttaatgatga aaaagtaggt gctttaatgg caactcctgt agatgaacag
    15421 gcattagcaa taggatattt aatgagtgaa aatatcattg cgaaagtaag tgatattgag
    15481 agtatagaaa caaaagatga tggtatgagt gtgcatatta aagcaaagat tgataaagaa
    15541 aatttagcaa agcttaatgc tgaaggtgta gttataagtg gttgtggtag agcacatact
    15601 gcaaatatcg atccagaagc cattgaagcg agtaaaatta gttctgatgc aaaatttagc
    15661 aaaggtgaaa ttttaaaaca aatgagtact ttttatactc aatgcgagct ttacgagaaa
    15721 acaggctgtg tgcatacggc taagcttttt gtagatgaga aaactttttt tataggtgaa
    15781 gatatagctc aacataatac catagataaa gctttaggaa aagcacgttt agctggggtt
    15841 gatttaagtc aatgtttttt aatggttagt ggaaggctaa gttctgaaat ggtagctaaa
    15901 gcagttatgc ataaaattcc agtgcttgtt tcacgcacgg ctcctacttg tttaggggtt
    15961 atgatagcaa gaaaatttga tttaacgctt tgtggttttg ctagagaaaa taagatcaat
    16021 atttatagtg gagaatttag aattcatgga taaaaatcaa gaaaaagaaa tcatctcata
    16081 tatgagagaa ttgttaaata gtaatgaaaa attagattgt ggtacggctt ttaaaattgc
    16141 aaagaaattt aatataaata tagaaaaaat cggacaatta gccgatgaaa atcacatgag
    16201 aattgataat tgcgagttgg ggcaatttgg acatttagat tttgaaaaag caaagattga
    16261 agtgcttaaa aaaatagaac ctagtttaga tgaaaagcgt agaatttttt gtaaagatgc
    16321 aagagatatt gctaaagaag gttgtggact taaaagtatg cgttcagctt taaaaactta
    16381 taaggttgat gtaaagtatt gtcaacttgg ttgttttaaa gaaaaaaaag gtaagcaatt
    16441 tatagtaaga acaaaaactt ggattgaaaa tgcggatgga gatttgcttt ttggtcgagg
    16501 aaaaacagaa cttttagaac ttatcggaca aacaggtagt ttattacatg cttctaaact
    16561 tatggggatt aattataaaa aagcttggat gcatttacaa accttacaaa aaaattctca
    16621 agaaatttta gttagcacaa gacaaggacg ctctaaagaa tcaggaacaa aacttactcc
    16681 tagagctatg gaattgatgg aaaattactc tattttgcaa aaagacatag aagaatacgc
    16741 taataaacgc tttaaagaat tgtttttaaa aggaaaaaaa taaatcttct atcaaaaa
//
LOCUS       DAPIWV010000029        16728 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.030, whole genome shotgun sequence.
ACCESSION   DAPIWV010000029 DAPIWV010000000
VERSION     DAPIWV010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16728
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.030"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..386
                     /locus_tag="RJ272_000669"
     CDS             <1..386
                     /locus_tag="RJ272_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381784.1"
                     /translation="ANEIYANLIQDPSNKNLLEQLKNKNTNLYTIFLLKENINDLNNT
                     AFQNELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNKIEEANVL
                     LSQIKENSSLNQIAKNLKHYQGITQ"
     gene            383..1381
                     /locus_tag="RJ272_000670"
     CDS             383..1381
                     /locus_tag="RJ272_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381785.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIIVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAIDKISFMGNGKFYYGDKILDLL"
     gene            1378..1668
                     /locus_tag="RJ272_000671"
     CDS             1378..1668
                     /locus_tag="RJ272_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HDV7381786.1"
                     /translation="MIKILEQTIKSLKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1655..2284
                     /locus_tag="RJ272_000672"
     CDS             1655..2284
                     /locus_tag="RJ272_000672"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HDV7381787.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            2402..3748
                     /locus_tag="RJ272_000673"
     CDS             2402..3748
                     /locus_tag="RJ272_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HDV7381788.1"
                     /translation="MGQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVGFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            3797..5239
                     /gene="pyk"
                     /locus_tag="RJ272_000674"
     CDS             3797..5239
                     /gene="pyk"
                     /locus_tag="RJ272_000674"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDV7381789.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRKVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVSIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            5337..5972
                     /locus_tag="RJ272_000675"
     CDS             5337..5972
                     /locus_tag="RJ272_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381790.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIDSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTVNRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(6003..8465)
                     /gene="pflB"
                     /locus_tag="RJ272_000676"
     CDS             complement(6003..8465)
                     /gene="pflB"
                     /locus_tag="RJ272_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HDV7381791.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLVRLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDITKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(8475..9710)
                     /gene="serS"
                     /locus_tag="RJ272_000677"
     CDS             complement(8475..9710)
                     /gene="serS"
                     /locus_tag="RJ272_000677"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDV7381792.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDALKKYF"
     gene            complement(9721..10680)
                     /gene="trpS"
                     /locus_tag="RJ272_000678"
     CDS             complement(9721..10680)
                     /gene="trpS"
                     /locus_tag="RJ272_000678"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDV7381793.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPKAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(10677..11174)
                     /locus_tag="RJ272_000679"
     CDS             complement(10677..11174)
                     /locus_tag="RJ272_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HDV7381794.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(11161..12543)
                     /gene="der"
                     /locus_tag="RJ272_000680"
     CDS             complement(11161..12543)
                     /gene="der"
                     /locus_tag="RJ272_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDV7381795.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            12645..13577
                     /locus_tag="RJ272_000681"
     CDS             12645..13577
                     /locus_tag="RJ272_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDV7381796.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIAYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFDGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILSPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            13574..14389
                     /gene="kdsA"
                     /locus_tag="RJ272_000682"
     CDS             13574..14389
                     /gene="kdsA"
                     /locus_tag="RJ272_000682"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDV7381797.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGSNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            14386..14850
                     /locus_tag="RJ272_000683"
     CDS             14386..14850
                     /locus_tag="RJ272_000683"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDV7381798.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            14850..15248
                     /gene="nusB"
                     /locus_tag="RJ272_000684"
     CDS             14850..15248
                     /gene="nusB"
                     /locus_tag="RJ272_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDV7381799.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            15245..16084
                     /gene="pyrF"
                     /locus_tag="RJ272_000685"
     CDS             15245..16084
                     /gene="pyrF"
                     /locus_tag="RJ272_000685"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDV7381800.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            16081..>16728
                     /locus_tag="RJ272_000686"
     CDS             16081..>16728
                     /locus_tag="RJ272_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381801.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIEFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKD"
BASE COUNT         5957 a         2647 c         2447 g         5677 t
ORIGIN      
        1 aagcaaatga aatttatgcc aatctaatac aagatcctag caataaaaat cttttagaac
       61 aacttaaaaa taaaaatact aatctttaca ctatcttttt actaaaagaa aatattaatg
      121 atcttaataa tacagccttt caaaatgaac taaaacaaat ttataataat gctcaaacaa
      181 acactttact taaaaatatt attgcattat ctttaggaga taaatcaata tttttaaaaa
      241 attatgataa attattagaa gcttacaaac ttttagagca aaataaaatc gaagaagcta
      301 atgttttact ttctcagata aaagaaaatt caagtttaaa tcaaatagct aaaaatctca
      361 aacattatca aggcattaca caatgaaaaa aatattttta acactatttt gtttaatatt
      421 tctatgtgct tgtggcacca aaagacaata ttttgaacca aaacaaaccg atggagattt
      481 aagtcataat agcaatttaa aaagtaaaat cgttgattgg aatctagttt ctgcaaaact
      541 tagcaataat acagctatct taaaaaataa tatttccata gacaagttta aacttcctaa
      601 aaattatatg cttctagctt atcaagatgg ggaatatttt actgcagata ataatggaaa
      661 tttaaaaatt tttgacaatt cttataatga aatttataat tttcaatttg acgctagtgt
      721 tgtaggagta gcttctaatg gagatgattt agcccttgta cttgcaaata atactatagt
      781 tcttgcaaat cgttctttgg gtattaaatt tagtcaaacc ctaacctcag ctccagctca
      841 agacagtcgt accgctaatc ctatattttt agacaatatc atcgtatatc caacgctaga
      901 tggcaaaatt ttaattcttt caagaaacaa tcttcaagtc attaaagacg tggttatttc
      961 ggcagaaaat tttttcaaca atgtaatcca tctaagcgta atcggagata aacttatagc
     1021 agcaacagct aaaaaaatca ttattgtaag ccccgctaga actctttatc ttgatgctga
     1081 cataaaagat gttgcactta gcgatgatgg tatttttata ctagaaaaag atggcactat
     1141 tattaaaact gattataact taagaaaaat tgcggaaaaa aaatttgaat ttgctatttt
     1201 tgtaaaaagt aatatataca ataattattt atatattttt gaaaaaacag gctatcttat
     1261 caaaatgaat ctaaatttag ataatacaca agtatttaaa ctttcagaag ctattgataa
     1321 aatttctttc atggggaatg gtaaatttta ctacggagat aaaattttag atttgttatg
     1381 ataaaaattt tagaacaaac aataaagtct ttaaaattaa atttaaagcc ctatgactta
     1441 agtatgttga ctagaaaaaa aagttatatt tgtgctaaag atcaaaataa cattcttttt
     1501 atgtatacag gaaaaacaaa atttttaatg aaagatgcct tatttttaga aaatctagca
     1561 cagcaaatta acataaataa caaatatttt tttagcatgg cttctctttg ctctaaagca
     1621 aaaaatcatc tagaaatgaa aggatttaat atctatgttg ctctgtgata ttgggaattc
     1681 aaatgctaat ttcctagatg ataacaaata ttttactctt agtatagatc agtttttaga
     1741 atttaaaaat gaacaaaaaa ttttttatat caatgtcaat gaacatctca aagaacattt
     1801 aaaaaatcaa aaaaatttta tcaatcttga accttatttt ttatttgata caatttatca
     1861 aggattagga atcgatcgca tagcagcttg ttatactatt gaagatgggg ttgttgtaga
     1921 tgcaggtagt gctattacaa ttgatattat ttctaattct atacatcttg gtggttttat
     1981 cttaccaggt attgcaaatt ataaaaaaat ttatagccat atttcaccac gattaaaaag
     2041 tgaatttaac actcaagtta gtcttgatgc attcccgcaa aaaactatgg atgctttaag
     2101 ttatggtgtt tttaaaggaa tttacctact gataaaagat gccgctcaaa ataaaaagct
     2161 ttatttcact ggtggagatg gacaattttt agcaaattat ttcgatcacg caatttatga
     2221 taaactttta atctttcgag gaatgaaaaa gattataaaa gaaaatccca atttacttta
     2281 ttaaaaatgt tacaaaaatt ctcattgata tcaaacctta atgaaattta actttttgta
     2341 aaacaaattc aattaaactt tatttagaaa aaagtttatt aaaataaaaa aaggaaaaac
     2401 aatgggtcaa caagaatttg atgtgcttgt catcggagct ggaatttcgg gagcagcatt
     2461 attttacgag cttgcaagat atacaaatat taaaaatatt gctttgatag aaaaatataa
     2521 tacagctgca acattaaatt ctaagggaac gagtaattct caaaccattc attgtggaga
     2581 tattgaaacc aattatactt tagaaaaagc gcgaaaagta aaaagaacag ctgatatgat
     2641 agttaaatat ggactcatgc aaaatgcgca aaataatttc atgttttctc atcaaaaaat
     2701 ggctctagct gttggagata tagaatgtga ttatatgaaa aaacgctatg aagaatttaa
     2761 agaactttat ccttatataa aatttttcga taaagcaaaa atcaaacaaa ttgaacccaa
     2821 ggttgtttta ggagaagatt gcaatcaaga tagacctgaa aatatctgtg ccatgggtgt
     2881 tgaaagcggc gaggttttta caactgtaga ttttgggaaa atgagtataa atctaataga
     2941 acaagcccaa aaacaaaata aaaatacttt cgttggcttt aatcaagaaa ttattcacat
     3001 agaaaaaaaa gatgatattt ttatattaaa aacctcaaat catcaagaat accatgccaa
     3061 aagcgtagtt gtcaatgctg gggcgcactc tttatattta gcacataaaa tgaacttagg
     3121 tatggataag tcttgttggc ctgttgcagg aagtttttat ttaaccaaac aaaaactttt
     3181 aaatggcaaa gtttatatgg tgcaaaatcc taaacttcca tttgcagccc ttcatggaga
     3241 tcctgatttg cttgctgata tgaacactcg ctttggacct actgcacttg ttattccaaa
     3301 actagaacgt tatcatggtc taaaatcagt tccagaattt tttgaagcac taaaacttga
     3361 taaaactgtt ttaaaagtaa cttttaatat gtttaaagat gcaacaatta gaaattacat
     3421 cttttataat tatctttttg aactaccttt tattgataaa agcttatttg ttaaagatgc
     3481 caaaaaaata gtcccaagtc ttaaagcaag cgatatttat tatgcgaaag gttttggagg
     3541 cgtaagacca caagttattg ataaaactaa aggagaatta atgctaggtg aagcaagcat
     3601 cacagaaacc cctggtatta ttttcaatat gactccaagt cctggggcaa caagttgttt
     3661 aggaaatgct gaaagagatg caaagcttat atgtaattac ctaggaatgg aatttaacga
     3721 agataaattt tcttcagaat tattgtaatc attttgtttc tatttttagc tacaataatt
     3781 tcaaaaggag tttaccatgc ttaaaaaaac aaaaattgta gccacagtag gtccagcaag
     3841 tgaaaaggaa gaaattctac gccaaatgat tatcaatggt gtaaatgttt tccgtttaaa
     3901 cttttctcat ggaacacatg agtatcataa aaaaaactta gataccataa gaaaagtagc
     3961 taaagaattg catactcgta ttggaatttt acaagacatt agcggtccta aaattcgtac
     4021 aggtgaactt aaagaaccat ttgaattaaa aaagggtgat agacttgatt tttatcgtga
     4081 aacaatttta ggggagaaga ttgctcaaaa tcattacaaa atcagtatta atcaaaaatc
     4141 cattttagat atgttaaaaa ttgatgaata tatttatcta tatgatggat caattcgtgc
     4201 taaagtagta agcatagatg atcaaaaaat tgaaaccatt atagaaaatg atggtttttt
     4261 aaactcaaat aaaggtatta attttccgaa tactaaaatc aatattgatg ttattacaca
     4321 aaaagataaa aatgatttac tttggggtat aaaaaatgaa gtagattttt tagcaatatc
     4381 tttcgtacaa aatgcgcacg atattgatga agttcgtgaa attttagcac aaaataacgc
     4441 aaaaatatct atttttgcaa aaattgaaaa atttgatgca gtagaaaata ttgatgagat
     4501 tattaaatct agcgatggta taatggttgc aagaggagac ttaggtattg aggtacctta
     4561 ttataaagtt cctaatatcc aaaaagaaat tatacaaaaa gcaaacaatg cctctaagcc
     4621 tgttattact gcgactcaga tgcttttttc attagccaaa agcaaaaccg ccacaagagc
     4681 tgaaatttca gatgttgcaa atgctgtttt agatggaaca gatgcagtaa tgctaagtga
     4741 agaaagcgcc gttggtatag atcctgcaaa cgctgttgat ataatgtgcc aaactataat
     4801 agaaacagaa aaacgctatc catataacaa atttaatgat tttaatgatt tagacaatac
     4861 agataaaatc atgcgttctt cagctcatct tgcaacagat cttaacgctg atgctatttt
     4921 ttctttaaca agtagcggaa aatctgctat taagattgca agatatcgtc caaatataga
     4981 aatcatagca gtagggcatt ctgaaaaaac cttaaactct ttaagtatag tttggggagt
     5041 taatcctgca atcttggtta acaaaagtaa tgaacttaca gaattattaa aagactctgt
     5101 aagatcaagt gttgaaaaag gttttatgga tgaagacaaa tgctatcttc taactgcagg
     5161 ctttccaaca ggagtagaag gtactagcaa tcttatccgc attctcaata aagagcaaat
     5221 tgcttattat ctacaataaa acattaaatt cctttgaaaa taaggaattt aatgtcctta
     5281 taaatttttt aagccaaaag tcgatataaa ttaaagcctc acacaaagga gcaaatatgc
     5341 aagtgaatac tttttcaaat atcgctagca tggcacaaac acaagttagc aataagaagg
     5401 cagatgatgc taaggaaaac acaaaagaca aaaatgttca aagtgctaat tctagcaagg
     5461 atgtagataa aaataccctt gaaaaattaa atgcacttgg tggaaaaggc attacacaaa
     5521 tttacctagt tcagtttcaa cagcaaacaa tgaatgctgt aatagattcg agcaatgccc
     5581 aaactggact agatagtctt ttaaatggtg ccaatttaga tactgcgaaa tctatactta
     5641 caaatattga ttttgcatcc ttaggctaca gtggcaaaaa tccacttgat atgaatacag
     5701 atgaacttca acaacttgta agtgaagatg gtttttttgg agtggaaaat acagtcaatc
     5761 gcatcgcgga ttttgttatt aaaggcggtg gcgatgatgt tgaaaaatta aaaaaaggtc
     5821 ttgaaggtat gaaaaaagga tttgagcaag cagaaaaaat gtggggtgga gaacttcctc
     5881 aaatcagtca agatacaata gatgcggcac ttaaaaaagt tagcgatcgc atcgatgaac
     5941 taggcggaaa aactctagat cttcaagctt aactaaaaat gcttagaaat ttctaagcat
     6001 ttttagttgt tattaatatc aaaagtaaaa aattcactct taaaattatt aggtaaagtt
     6061 ttatactgag atatcgcagc ttcatagttc tttacttctt gatacaacat accaagagct
     6121 gctttactct ctttgttatt tttatctgta agtttagaaa gctgcaaaag cgctatagct
     6181 gaatttggat tatttgcacc tacggctgct acggctgcta aaaataaagt tttagtatct
     6241 ttagctccat aatcatcaat caaagaatta taaagcgcat aagcctcctc gtattgctgt
     6301 gcaaaaatat ccaaataagc taaagtttgt aaaataccct catcttttgc tcctgaaaca
     6361 ttaatcaact ctttaaattt ctgtctttct aaatttaaaa gccctgcaat atgcattaaa
     6421 ttaacataaa attccctagc tatatttggc ccaccaaaaa cactacgata atcaagtttt
     6481 aaatttttaa aatgaatttg agcattttga gcatattctt taatatttaa atttgaattt
     6541 aaagaattaa aatacaaaat atttgccaaa atatcttcag gcaactctga acgcaattta
     6601 gcaattttca catctacttg attattaagg ttattatttt tagcaacaat agcttcaaaa
     6661 atcaaactca aaggcgtatc tttttttgtt tcatctaaat aaggaagcat agaaatataa
     6721 ttattattaa ctaaaaataa catacttttt tgcatattag ctttaaaatt agaatcagca
     6781 gctatattat caagaatttc attgtaaagt ttagttatat caatatcaat taattttgca
     6841 caaaacatag caaaagcacc tgctaagtaa tttttaggat taagatgata tgaacttgaa
     6901 aaatgcttat aagcaagttc ataattttgc atttgggcat aagttaaagc caaattataa
     6961 tgtaaaatac tatgttctgg ataatccttg ataagttttt gaaattcttg gttagcaagg
     7021 cgtaacttct gatttaatgc atagttaata atattggcaa tttttacatt ggtagatgaa
     7081 agagctttgc ttatattaag ataaattccc gcatcagtac tatcatctac gaaatctgta
     7141 acattagctt ttttaatata taaagcagcc tgcttactat caaaaacctg ataaggtgca
     7201 aaataaaaaa gcaaatcgaa ttgatctttt tgttttttta acaaatcttt tgaaaaagaa
     7261 ttttgagcaa ctgctatatt aaaaagatcc ttatttaaac gaacttgaat tttataagta
     7321 tctaaaatct tatatctatc tttatcgtta tcataagaat tttgcaagcg cactaacata
     7381 tcttgataat ttcctgtttt aatatcaacc aatgttaaag ccgctaaact ctgattaaaa
     7441 tctctttcaa ttttcatcgc tgtgcttaaa gcgactttag ctttagcata ttctcctatt
     7501 ctagcgtata aaagacctaa agataaacta gattcaaaat tgccttgaga atttaattgc
     7561 tgtatagcct tggaatcaaa gtccattttt gcataaattt tagcagacaa atactttgca
     7621 acatcagaat acggctccac atctgttctt tgcaacattt gtaaggcctc agggtaatat
     7681 cctttgtaat aattaatcaa gcttaaataa taatcatata attttgattt tccttctttt
     7741 ggaagataca cttgagctaa atcaatataa tatctaaatt tttccttatc attaagcttt
     7801 aaagcacaaa cagcagcatt gatagcagct acactttgat tttctccatt ggctatagct
     7861 ttcttgaagc tttcaaaagc ttcttggaat ttattctcat tcatttgaga aacgcctaaa
     7921 ttataattag ataaagattc gttatatacg gcaacttgct cataaacttt taaagcctgt
     7981 tcaacctcac cctttaaata taaagcattt gctttttgga tcataccatc aattctttgc
     8041 atatcattgt atttatatga ttcatcaggc ataacaacag gttgttctaa aggcttagaa
     8101 gctataatat ctggtttaat ttttccttca ctaaaagtta aataaaaaag tgtaaaaact
     8161 aaaatgcaaa taatccccaa agataaaccc acaagagaca taaacttacg atctttatac
     8221 caaggcgtag gctcttgact ttcaacttct tcaaaagttg atacatcttc aggcgcactt
     8281 tctcttgtaa atttaaaacc actatcacta ttttcttgag gtaattcttc tggcaatgat
     8341 gcaaattctt catcttctgg agcttgcccc tcttgcccct taaatccctc taaactctca
     8401 tcaagtcttg gttgatttaa gccatcttcg ggtttttcta gtattatatc ttcttgttca
     8461 gccatctata ctctttaaaa atattttttc aaagcatcag gaatatgaat ttttccttct
     8521 ttatcttgat aattttccat aatcgctacc aaggttcttc ctactgccaa agatgagcca
     8581 ttaagagtgt gaacgagttc attttttcct tgttcgtttt tatagcgaat tttagcgcgt
     8641 cttgcttgaa aatcacgaca atttgaaacc gagctgatct cacgatattt attttgtcct
     8701 ggaagccaca cttcaagatc tacagttttt gccgcactaa aacccaaatc tccggtgcaa
     8761 agcatcaaat gtctatgcgc taaacctaaa gaactcagca aatcacttgc acactcaagc
     8821 atttcattaa acacgctatc actttgctca ggtttagtga tacttacaag ctctactttt
     8881 tcaaactggt gttgtcttat aatacctctt gtatcacgcc ctgcactgcc tgcttctttt
     8941 ctaaaacaag cactataaca agtcattttt atcggtaaag tttcactagc taaaatttct
     9001 ccgctgtaaa gattggttac tggaatttca gaagttgaga tcaaatacaa atcctcatca
     9061 tctaccttat acatatcttc tttaaatttt ggcaactgac ctgtcccaaa catagtagca
     9121 ccatttacca aaaaaggtac attaacaaat tcaaatccac gacttctatt aaaatctatc
     9181 atataattta ccaaagcacg gcttaataaa gctccttcgt tcttaagcac acaaaaacgg
     9241 ctttgtgaaa tttttacccc acgcacaaaa tcaagccaat ttaaactctc tcctaattca
     9301 aaatgctctt ttggagtaaa atcaaagcta ggtggattta aaactttttt aagctccaca
     9361 ttttcatctt cgtcctcacc cacaggcaca cattcatctg ggatatttgg gatggcatga
     9421 gcgatttctt caagctcatt ttctaaagca tttactttag cgctttgctc attaattttg
     9481 cttttatttt cgcttaattt tgcttttaaa ctttctttat cttcggctgt agcaagttct
     9541 ttactgaatt tattttgaaa agcttgaaat tcttctaaag ctgttttttc tttttttaaa
     9601 cttgcaaaaa gttcagcaag tttttttaag atattttcat caactttttt attttttaac
     9661 tttttagcca cttcatcaaa attattttgc aaatttttta aatctagcat tttctactcc
     9721 ttaaagtccg attttttcat aaattttttg cattttttct tgggcgattt ttcttgcttt
     9781 tgtcgcacca aaatccaaaa tttctttcaa atgcgaaggc ttttctaaaa gctcattata
     9841 tttttctctt gcttctttaa aataagcatt tacaagctcg tttaaataca ttttaaaatg
     9901 tccataaccc tcaccacctt tttcatagcg tatttgtaat tctttttgcc ctgattcatc
     9961 taaaaaaagc tttgcgattt taaaaatatt gcagttttca tgatcttttg gatcttctaa
    10021 agcggtgcta tctgtaacta tggaagaaat ttgttttttt aaggtttttt cactgctaaa
    10081 aatatctata gtattttgat aagatttact catttttgcc ccatcagtgc ctacaactac
    10141 agctacttct tcattaactt tagcctttgg aagggtaaaa atttcacccc attcattatt
    10201 aacttttaaa gcaatatcac gtgcgatttc aacatgttgg atttgatctt ttcccacagg
    10261 aacaatttgt gtatcaaaaa gtaaaatatc agctgccatt aaaacaggat aagaaaaaag
    10321 cccatgtgaa gcactaagcc ccttagcaac tttatccttg taactatgcg cacgctctaa
    10381 taaacccata ggagtaaatt gcgataaaat ccaataaagc tccataactt ccttaacatc
    10441 actttgcaac caaaaaacgc ttttttgagg atctatacca aggcttaaaa aagccgcagc
    10501 agcttttaag gaattttgtt taagtttttc tccatcttga gaagaagtca tggcatgata
    10561 attagcaata aacataaaca tttggctttt ttcttgtgca tctaccattt gcttaatcgc
    10621 accaaaataa ttacctatat gcaaatcgcc acttggctga aggcctgtta atactctcat
    10681 tttatcacct ttttaatctc gcttaaaagc tcatctatat ttttattttc tatatttaaa
    10741 ataaaatttg ccttttgttc atacttgctt aaacgctcat tatataattt ttttgcttta
    10801 atttcatcat aaaataaagg tcttttagaa atttcatctt tgtctaaacg cttttttaaa
    10861 tattcaaaat ctgcttttaa ataaatacaa aaacctgctt tttctaaatt tgaaacatta
    10921 acaaaacccc cgcctgtagc aatacaagct ttctcacaag aactaaaaaa atcagccatt
    10981 ttttgctctt gttctctaaa aaaattttcc cctttttgtt caaaaatttc actgactttt
    11041 tgattaaatt tttgttctat taaaaaatca ctatctaaaa aaacaagatc taaatcctta
    11101 gctaaagctc ttgctaaagt gctttttcca gaacccataa atcctataaa aacgatattt
    11161 ttagctttca tcattttctt tactgccctt tttacgcgaa gcaatcacta aaggcacacc
    11221 ttcaaaatta aattcttttc tgatttgatt ttgtaaataa cgcttatagc taaaatgcaa
    11281 ggccttagga cgattcataa taagtgcaat ttttggcggt gctaagtcat attgtactgc
    11341 ataataaatt ttaaccaatt tcccataatc atgcggcaaa ggatgtgctc ttgtggcatt
    11401 ttctatcaag gtattaagct tagaagtttg gattttttga gtgaaatttt caaaaatttg
    11461 caaaatttta tcgagtaaaa catgcaccct ttttccactt aaagctgata cgctaatcac
    11521 gggtgcgtaa gctagaaatt taaaacgatc aagacgcaat tcttttacag tcttatcaaa
    11581 atccatctca cttttatccc atttatttaa aacaataatc acacctaaat aatgcttagc
    11641 cacaagccca gcaatgcgtt catcaagctc gttaaagccc tcatgcgcat ctaaaaccaa
    11701 aagtgctatt tgagaatgag ataaaatttt ttccgtgcga tttagggcaa agcgttcgag
    11761 tccttgaatt ttaccccttt ttctaatacc tgcagtatca acaaattcta tcactttatc
    11821 tttatgaact acactttcat taacaggatc tatagtagtt cctgcaatag aacttacaac
    11881 actgcgttct tgtttaacca aagcatttaa aagacttgat tttccaacat ttacacgccc
    11941 tacaataccc actctgatat gattttgatc gacttcttta aattgaaatt cttttccttc
    12001 ttcataatgc tctaaaaaat cttctaaatt ttcttcttca tcggggatta aaaactcttc
    12061 atgtaaaaat ttttcaagcc attcataaag ttcatctaag cctacattat gggttactga
    12121 aagattaaag atttccttta cgccaaaatt tgcaaactcc caagcccttt cttcatcttt
    12181 tttattatct actttattaa tcactaaggc tataggtttt ccaagttttt ttaaagaata
    12241 aaaaaactgt ctatcctcat catcaggcgc taatttccca tcaactagat aaagtatgat
    12301 atcgctttct ttagctactt ttaaagtgtt ttttttcaca tttttaaaaa gttcatcact
    12361 ttcatcaagc cccccactat caataagcat ggcttttttt gaatgaatat gaatttgcgt
    12421 tttatttgta tctctagttg tgcctgaaat atcacttgta atagctattc tttgtcttgc
    12481 cattctatta aaaaggcttg attttcccac atttggctta cctataagta taatgctttg
    12541 catttttttc ctagaaaatt atatttttaa aattatataa aatttggctt aatattaagc
    12601 aaaaaaagac tagaattaac ccagatttta gtcaaggaaa aaaaatgcta aaagtaatca
    12661 agcataattt aggaatttat ttcatgattt tagcatgttt ggattttgca cttatgggag
    12721 cttgtgcaaa aattcttagc aaggaaatga gttctataga aattatgttt tttagaaata
    12781 tcataggaat ttttttcata gcctatcttt taaaacgatc taaggcacat aaagaagggg
    12841 gatatttttg gctcttggta tttcgtggag tagtaggcac gctttcacta tatatgtttt
    12901 tctataatgt ttcaaatatt acactaggtg gagcttttgc ttttcaaaaa actgctccta
    12961 tttttattac tttaatagct tttgttgttt ttaaagaaaa tattggcatc aaaggctgga
    13021 taggaatttt aatagcattt gatggagtgc ttttaatcgc tcagccttgg gctcataatt
    13081 taaatcattc aggctttgat ttaaaaaatt cagttatagg tatcacgagt ggatttttag
    13141 ccgctttagc tcttacaagt gtaagagaac ttagaaaatc ttacactaca gaacaaattg
    13201 ccttttcttt tatcctttta ggaaccttaa tgcctttaat ttctatgatc agtgctgaat
    13261 tttttgaacc acagcatctt gattctttac atttagattt cattctatca ccttttgtga
    13321 tgccaagtct tacagcttgg cttatcattg ccattatggg aactttaggc accatttatc
    13381 aaattcatgt cactaaagct tatggtatcg ctaaacaagc aggagtggtt gccggagtta
    13441 gttatcttga tgtagtattt agtatgatag ttgggataat tttgggagat aatttaccaa
    13501 gtactatggt ttttttaggt ataataggca ttatttttgg tggattaatt ttagttaaga
    13561 acaaaggaaa aaaatgaaaa aaatgatact cattgctggt ccttgcgtga tagaaagcaa
    13621 agatttgatt tttaaagttg ctgaacagtt aaaaaatttt aatgaaaatc caaatataga
    13681 attttatttc aaatcaagtt ttgataaggc caatcgcaca agtattaatt cttttcgagg
    13741 tcctggtctt gaagaaggat taaaaatttt acaaagcgta aaagatgaat ttggtatgaa
    13801 aatcttaacc gatatacacg aaagcaatca agcaaaccct gtaagtgaag tagctgatgt
    13861 cttgcaaatt cctgcttttt tatgtcgtca aaccgattta cttgtagccg cagcaaaaac
    13921 taaggcaaaa attaatatca aaaaaggaca atttttaaac ccaagcgata tcaaatacag
    13981 cgttaaaaaa gttctacaaa cccgtggtat agaagatgaa ggctatgaag ctgctcaaag
    14041 aaatggtgtt tttgtagctg aaagaggggc tagctttggc tatggaaatt tagtagtaga
    14101 tatgcgttct ttagttatca tgcgtgaatt tgctccagtt atttttgatg ctacccatag
    14161 tgtacaaatg ccaggggctg caggtggaag tagcggaggg aaaagcgaat ttgtagaacc
    14221 tttagcaaga gcggcagcag ccgtaggcat agatggcttt ttctttgaaa cacatattaa
    14281 tccttgcgag gctttatgcg atggatctaa tatgcttaat cttacacgcc ttaaaaattg
    14341 cgttaataca ttactagaaa tacaaaatat cataaaggaa aacaaatgaa tattattgaa
    14401 ggaaaattaa atttagactc aaatacaaaa attgctatca ttaatgcaag atttaatcat
    14461 atcatcacag atcgccttgt agaaggagca aaagatgctt ttttaagaca cgggggcaaa
    14521 gaggaaaatc taagccttat acttgttcct ggtgcttttg aacttccgta tgcgttaaaa
    14581 aaagctatag aaagcaaaaa atttgatgca atttgttgcg taggtgcagt aattcgtggc
    14641 tcaactccgc attttgacta tgtttcagca gaaaccacca aaggcatagc caatgtgagt
    14701 ttaaatcata atatccctgt aagctttggt gttttaacta cagatacaat agaacaagcc
    14761 atagaaagag ctggaagcaa agcaggcaat aaaggctttg aagctatgac aactgtaatc
    14821 gagatgttaa atttaagcaa ggagctttaa tggcaacgcg tcatcaagtt cgccaaagcg
    14881 tcatctcctt actttatgct tttgaattaa attctcaaaa caacgttttt gtagatgaaa
    14941 ttttagatga aaaaaaaata cgcaatgaac aaaaaaattt tactttaaat ttatataatg
    15001 gaattttaga taatttaaac aatattgatg aaaccttaaa ttcatttcta aatgataatc
    15061 aaattacagc tttaggacat gtagaaagag ctatactaag acttggagct tatgagttac
    15121 tttttaccga tactcctagc gccattgtca tcaatgaggc tatagaactt gctaaagaac
    15181 ttgctaatga caattctcca aaatttataa atggagtttt agatgcctta ataaaggcta
    15241 aaaaatgaag ctttgtgtcg cacttgatct ttctacaaaa gaagaatgct tacaacttgc
    15301 caaagaatta aaaaatttag acatatggtt aaaagtaggt ttaagagcat atttaagaga
    15361 tggttttaaa ttcatagaag aacttaaaaa agttgatgat tttaaaatat ttcttgatct
    15421 taaatttcat gatattccca acactatggc agatgcttgc gaagaagtat caaaacttgg
    15481 tgttgatatg atcaatatcc acgcaagtgc tggaaaaata gccatacaag aagttatgac
    15541 acggcttagc aaattttcaa aaagaccttt agttttagca gtttctgctc ttacgagttt
    15601 tgatgaagaa aatttcttta gtatttatag acaaaaaatt gaagaagctg taattaattt
    15661 ttcaaaaata tcctatgaaa atggacttga tggtatggta tgctctgttt ttgaaagcaa
    15721 aaaaattaaa gagcacacaa gttcaaattt cttaaccctt actcctggaa ttcgtccttt
    15781 tggagaaaca aatgatgatc aaaaacgtgt tgctaatctt gcaatggcta gagaaaattt
    15841 gagtgattat atcgttgtgg gaaggcctat atataaaaat gaaaatccta gggctgtatg
    15901 tgaaaaaatt ttaaacaaaa tacacagaaa aaatataagc gaaaacgata tagagcaaaa
    15961 ttatgaagta attcagcaaa aagaatggga tatgtgtaat cactttgaag aatggattaa
    16021 aactcagcct gataaagaac atgctttaaa agaattttat gctaagtgtg ggataaaata
    16081 ttgaattatc aacaattaga atgcgattac tttaatcttt acaatcagtt tcttagcgtg
    16141 gattttcaaa tttcattatt tgaaaaagat cataaaggtt taattaaaga ttttatattt
    16201 ttttattatc aaattttaaa acaaaaagac ttgagctact tgcttgaggt aagaaataaa
    16261 atttccctga aagtttataa ttatatgcaa gagcactcca cttctccaaa agatttaagt
    16321 cttatttgtc taagagaaaa taaacatatt gaattttttc aaatatttta caaggctctc
    16381 gcttattttg tagcctttag aaaaaaactt gatggagaac aaaaaattaa aaatttgatt
    16441 tcaaatatca atgactgttt tggctatcat ttcttgaatt ctgactttaa caatcttcaa
    16501 aattttcaaa aaagcgattt gttcacctta cctgaaaaac atcttaaata ttttcacttc
    16561 gccatgattc atctttgttt catggtttta aatcctttaa attttaaaga ctctaatcgg
    16621 catcttgata aagcgattaa ttatcttgtc gatggaactt ttgaaattta tgagctcatc
    16681 tttaaagaat attttttatt gttttcaaaa gataaagagc tcaaggat
//
LOCUS       DAPIWV010000030        16647 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.031, whole genome shotgun sequence.
ACCESSION   DAPIWV010000030 DAPIWV010000000
VERSION     DAPIWV010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16647
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.031"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            82..1416
                     /locus_tag="RJ272_000687"
     CDS             82..1416
                     /locus_tag="RJ272_000687"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDV7381802.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            1416..2000
                     /gene="clpP"
                     /locus_tag="RJ272_000688"
     CDS             1416..2000
                     /gene="clpP"
                     /locus_tag="RJ272_000688"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDV7381803.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            2036..2563
                     /locus_tag="RJ272_000689"
     CDS             2036..2563
                     /locus_tag="RJ272_000689"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDV7381804.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            2560..4065
                     /locus_tag="RJ272_000690"
     CDS             2560..4065
                     /locus_tag="RJ272_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDV7381805.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIEKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFHFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNINKTHILEALSFRARN"
     gene            4067..4765
                     /locus_tag="RJ272_000691"
     CDS             4067..4765
                     /locus_tag="RJ272_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HDV7381806.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            4749..6119
                     /locus_tag="RJ272_000692"
     CDS             4749..6119
                     /locus_tag="RJ272_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HDV7381807.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            6110..6676
                     /gene="purN"
                     /locus_tag="RJ272_000693"
     CDS             6110..6676
                     /gene="purN"
                     /locus_tag="RJ272_000693"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDV7381808.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDSGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            6748..7467
                     /locus_tag="RJ272_000694"
     CDS             6748..7467
                     /locus_tag="RJ272_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDV7381809.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            7460..7669
                     /locus_tag="RJ272_000695"
     CDS             7460..7669
                     /locus_tag="RJ272_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HDV7381810.1"
                     /translation="MAKDTNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            7679..8863
                     /locus_tag="RJ272_000696"
     CDS             7679..8863
                     /locus_tag="RJ272_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HDV7381811.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDDGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(8877..10235)
                     /locus_tag="RJ272_000697"
     CDS             complement(8877..10235)
                     /locus_tag="RJ272_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDV7381812.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(10334..11539)
                     /locus_tag="RJ272_000698"
     CDS             complement(10334..11539)
                     /locus_tag="RJ272_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDV7381813.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(11585..12331)
                     /locus_tag="RJ272_000699"
     CDS             complement(11585..12331)
                     /locus_tag="RJ272_000699"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7381814.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFSLFSFYIQEKSSGVDFKQGAEF
                     TSIMMVSEPPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(12333..12743)
                     /locus_tag="RJ272_000700"
     CDS             complement(12333..12743)
                     /locus_tag="RJ272_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HDV7381815.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(12730..13491)
                     /locus_tag="RJ272_000701"
     CDS             complement(12730..13491)
                     /locus_tag="RJ272_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7381816.1"
                     /translation="MLKKMFLFCFLLLNLNAEVNATDTNLSFDSPKIETEAPKIEFSL
                     SSLYQNADEVVKGVIYILVLFSILAWTVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERMELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(13503..15770)
                     /locus_tag="RJ272_000702"
     CDS             complement(13503..15770)
                     /locus_tag="RJ272_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7381817.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     SGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINPFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKIPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            complement(15767..16618)
                     /locus_tag="RJ272_000703"
     CDS             complement(15767..16618)
                     /locus_tag="RJ272_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDV7381818.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGVNLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
BASE COUNT         6030 a         2443 c         2574 g         5600 t
ORIGIN      
        1 attactttaa aattttatgc aagtaataag gaaaaatttg ctatcattga aggcaaattt
       61 tattttataa ggaaaaaaac tatggaagta aaggcaaagc aactagattc tgttaatgcg
      121 actgctagtg taaaaattcc ttcaggaatg atcaaaagtg aagtagaaaa tttagcaaaa
      181 aaagcttcta aaagtgtaaa aatggatggg tttagaccag gaaaagttcc tgtaagtgcc
      241 gtacttaaaa gatatgaaag agagctcact caagatgcag aacaaaatct ttttaaatcc
      301 gctgtaaata gcgctttaca agaacttaaa aaagaaaata aagagcttgt aggtgagcca
      361 tattttgaaa aatttgatcg taaagatgga gaaattattg ctgaattaat actttctttt
      421 aaacctgaaa tcaaacttga gggttatgaa aaactcatcc ctgaatatca aactccaaaa
      481 gtaagtaaaa aagaaattga tgagaaaaaa gatgagcttt taaagcgttt tgctactcct
      541 gaagctataa aaacaaaaag agctttaaaa gaaggtgatt ttgcaaaatt tgattttgaa
      601 ggttttgtag atgataaagc ttttgaaggt ggtaaagctg aaaattatgt tttagaaatt
      661 ggttctaagc aatttattcc aggttttgaa gatggtatgg tgggaatgaa aataggtgaa
      721 gaaaaagata tcaaagtaac tttccctaaa gaatacggtg cagcgcattt agcgggtaaa
      781 gatgcagtat ttaaagtaaa actacatgaa attcaagagc ttaaaattcc agaacttgat
      841 gatgaaatgc ttaaaaaact tttaccagga gaagaaaaag ctagtgttga agttttagat
      901 gaaaaattaa aagagcaaat caaaaatgaa aaacttttca aacttgtaaa tgatgaatta
      961 aaaggcaaat ttgcagatgc tttgattgaa aaatataatt ttgatttacc taaaggcata
     1021 gtagaacaag aaactgatat gcagatgcgt gcggctttta atacttttag cgaaaaagaa
     1081 attgaagagc ttaaagcaag taaagaaaaa tatcaagaaa aacgtgattc ttttaaagaa
     1141 gaagcacaaa aaagtgtaaa acttactttt atcattgatg aacttgcaaa attgcgtaag
     1201 attgaagtaa atgatcaaga attgattcaa gcgatttatt ttgaagcata tcgctatggt
     1261 atgaatccaa aagagcattt agaaaactat aaaaaacaag gagctttgcc tgctgtgaaa
     1321 atggctttaa ttgaagaaaa actttttaat gatattttta taccaaaaac agaaaaatcg
     1381 gaaaaagtga gcaaaaaaga gaaagaagat aaataatgtt tattccttat gttattgaaa
     1441 aatctagtcg tggtgaaaga agttatgaca tttattcacg ccttttaaaa gatagaatta
     1501 ttatgctaag tggtgaaatt catgatgaac ttgccgcttc tatcgtagca caacttcttt
     1561 ttttagaagc tgaagatcct acaaaagata tttatcttta tatcaattct ccaggtggtg
     1621 taattacaag tggttttagt atttatgata ctatgaacta tatcaaacct gatgtttgta
     1681 cgatttgcat aggacaagct gcttctatgg gagcattttt gcttagttgt ggcgcagaag
     1741 gaaaacgttt tgctttgcct aattcacgca ttatgattca tcaaccttta ggtggagcta
     1801 gaggtcaagc cacagatatt gaaattcaag ccaaagaaat tttaagactc aaaactatac
     1861 ttaatgatat tttggcaaaa aatactaagc aaaaagttgc aaaaatagca aaagatacag
     1921 aaagagattt tttcatgtca gcacaagaag ctaaagaata tgggctgatt gataaggttt
     1981 tggaaaaaag ttttaaatga tttctttgga gatcatttaa aacaaaggtt ttttaatggt
     2041 tagaaaaatt atcacctatc ccaatcctag acttttttta aactctgaaa ttgtaaataa
     2101 atttgataca gaacttcaca ccttgcttga tgatatgtat gaaactatga tagcaagtaa
     2161 tggagtaggt ttagcagcta ttcaagtgga tattcctttg cgtgttttac ttgtaaatat
     2221 ttttgatgaa aacgatgaac aaaaaaaaga agatttgcta gagattatca atcctgaaat
     2281 tattccttta gatgaagaaa tgatcacttg cacagaaggg tgtttgagtg tgccagattt
     2341 ttttgaagaa gtgaaacgct ataatcatat cttgcttaaa tatcaagatc gctttggaga
     2401 atttaaagaa cttgaagcaa aaggtttttt agctgtggct attcaacacg aaaatgatca
     2461 tttaaatgga catttattta tagaaaaaat ttcctttgct aagcgtcaaa aattcgataa
     2521 agaatttaag aaaaagaaga aaaatcataa aaaagagaaa tgaaaaaact aaagtgcata
     2581 agctttcatg aaggcttaga cattatagag gtagaatcca cttttacaag aggtttgcca
     2641 aatttaagca tagtagggct tgcaagtaca gcgattaagg aaagtgtcga acgcatcaaa
     2701 gccacacttt taagttgtga ttttgctttt cctgctaaaa aaatcactat caatcttagt
     2761 ccttcaggca tcccaaaaaa gggatcacat tttgatttgg ctatcgcttt attaatcctt
     2821 ttgcaaaatg aagaattaga tgactttttt gtagtaggag aattaggact tgatggaagt
     2881 attaaaagca caaatgagct tttttctttg cttttgtttc tctctgctaa aattgaaaaa
     2941 gctaaaatcg ttgttccaaa aagtatagca caaaaagctt ccatgatacc aaatttagag
     3001 gtttatggac ttgaaaattt aaatgaagca atagagtttt ttaaagaaaa aaattatgaa
     3061 aattttcatt tttctcacaa tcatccttta ttcgcaagtc ctttacaaat agaaaatgaa
     3121 atttttttac aaaatatgga ttttaaactt gattttaaag atatcaaagg gcaggaaaaa
     3181 gctaaaagag cttgtatgat agctgcttta ggtatgcata atatcttatt tgaaggaagt
     3241 ccaggaagtg gtaaaagtat gtgtgctaaa cgccttgttt atatcatgcc tcctcaaagt
     3301 ttaagtgaaa ttttaatgca aaatgcttat atgtctttag attcaaaaga ttgtgaattt
     3361 actaaaattc gtgcttttcg tcatcctcat catacttcta caagagcaag tatttttggc
     3421 ggaggaacaa aaaatgctag aattggagaa gtcgcacttg caaatggtgg agtattattt
     3481 tttgatgaat ttccacattt taataagcaa atcatagaga gtttaagaga gcctttagag
     3541 gatcataaaa ttcatatttc aagagtaaat tctaaaatca cttatgaaac aaaatttagc
     3601 tttatagctg cccaaaatcc ttgtccttgt ggaaatttat tttctaaaaa tctttcttgt
     3661 gtttgtagtg aaaatgagat taaaaaatac aaaaatcaca tttcagctcc tattatggat
     3721 aggattgatc tttatgtagc tatggatgag atcagcaagg atgataaaac gagtataagt
     3781 tctaaagaaa tgagtgaaaa aattttacaa gcttttattt ttagtaaaaa acgggggcaa
     3841 aaagaattta atgggaaatt aaaagatgaa gatttaagtc gtttttgtgt attggaaaaa
     3901 gatgccaaag atacgctaga tttagcaatt tcacgttata atctttcttt gcgatcgctt
     3961 aataaaattt taaaagtttc aagaagtata gcggatttag aacaaagtct taatattaac
     4021 aaaacccata ttttagaagc tttaagcttt agagcaagga attaaaatgg aaaataaaag
     4081 tatagctatc tttatagatg cagaaaatat ccctgcaaaa tacgctaaaa gtatttttga
     4141 tattgcttca gattacggag aggttattat taaacgcatt tatggagact ggactcaaaa
     4201 aaatatacaa ggttggagag agcaaattgc tgaatattct ttaatcgcta tgcaacaatt
     4261 taattttgca gccaacaaaa actcaagcga tatgtattta atcactgaaa tcatgtccat
     4321 attttatgaa aaaaacatag atatttttgt tattgtttca agcgatagtg attatacttc
     4381 actcattcaa aaattaaggg aaaataaaaa acaagttata ggaatggggc ttgaaaaatc
     4441 tataaaatcc tatgtaaatg cttttagtga atttttttat ttagataaag atgagagtaa
     4501 aaaagaagat attttaagta aggattattt aagagcttta atcaatatca ccgaacaact
     4561 tatcgatgaa aaagggcgtg ccgaatacgc acaaatccgt actaatatga accgcaaata
     4621 ctcggatttt catccgcaaa attatggttt taagaatttt cgtgctttga tccagaaatt
     4681 tttacccaaa atgaaaaaat ttgaagaaga aagagaaaaa aatatatatt ttttggtgaa
     4741 aaaagattat gaaagctatt attgataata taaaaatttt agaacaaaat gctataaata
     4801 aaggcttaga tgaacttatt ttaatggaaa atgcgggatt aaatttagct aaactgatta
     4861 aaaaagaagc taaaaaaatt cgcattcaac gcaagattag aaaagtaaaa atactttttt
     4921 tattaggcgg gggtaacaac gcttcagatg gcttggtggc tttaagaaat ttaaaacacg
     4981 ctaaagctta taaaataggc tttaaagaaa atacgctttt taaaaaacaa gagcaaattt
     5041 tacaaaatta tgcttttaaa ttttgtaaaa aagaacccaa ttttaaaaaa tttcatatta
     5101 tcattgattg tattttaggt acaggttcaa atcgttgttt agatgaaaaa acaagtttaa
     5161 ttattcaaaa agttaatcaa agtaaggctt taaaaatagc ttgtgatata cctacaaatt
     5221 tgggatttta tccttgtttt aaagctgata ttacattttg tatgggagct ttaaaggaaa
     5281 ttttacttga agattttgct aaggaatttg taggaaggat taaaatagcc aatttaggca
     5341 ttagatctaa gaaattttac cctaattctc aagctttttt gcttgaaaaa aaagatttaa
     5401 aaactataga tagaaaaatc aacgccaata aaggaaattt tggccatatt tatatagttg
     5461 ccaatgcaag tgctggaact ttagcaggac ttggagcctt aaattttgga gcaggtcttg
     5521 tttctttagt agcacaaaaa agtttctcgc ctcttttgat gttaaaagaa aaaattgaaa
     5581 ataatgcaag tgctattgct ttaggtatgg ggcttgaaaa tttggatttt ctaaaagatg
     5641 aaattttgca aaacactcct ttgatcttgg atgcaaactg ctttttaagt gaagctttgc
     5701 tttggtattt aaacagaaaa gatgttgtta taacccctca tccaaaagaa tttataaaac
     5761 tttataaaat gtgctttgat gagaatttag atatagaaac attgcaaaaa aatcgctttt
     5821 tctatgctag aaaattttca caaaattatg attgtgttct tgttttaaaa ggagcaaatc
     5881 ctattattgt gcaaaaagaa aaattatttg ttgtaaattt aggaaatcaa gccttagcta
     5941 aaggtgggag tggagatgtt ttaagtggaa tgattgctgc acatttaggt tttggtttta
     6001 gtgctttaga agcagcaaaa aatgctactt tagctcatgg acttgttgca aaaaaatata
     6061 aatttaataa aaatagcttt gacgctttaa aacttatcaa aggattaaaa tgcttgtaaa
     6121 attagctgta ctttttagtg gaaatggaag taatttagaa aatattttag aaaaacttca
     6181 taaaaaaacc ataggggaaa atacctatga agtagtactt tgcatttgta ataaaaaaga
     6241 tgcttttggt gtacaaagag caaaaaaatt tggtcttgat actgtcattg ttgatcataa
     6301 ggcttataat actcgtgaag aatttgatac gattttggta caaaaaatca aagaaagtgg
     6361 agcaaatctt actgtattag caggttttat gagaatttta agtcctgttt ttacaaaaaa
     6421 tattaaggca attaaccttc atccttcttt attacccctt tttaaaggag cacatgcgat
     6481 taaagaaagt tatgaaagtg atatgaaagt ggctggagtc agtgtgcatt gggtcagtga
     6541 agaacttgat agtggaatga ttatagctca aaaagctttt gaaaaaagaa atttgagttt
     6601 tgaagaattt gaagaaaaaa ttcatagtct agaacatgaa attttaccct taagtgtgat
     6661 tgaaattttt tcttaaagaa ttaaaggtat ttgctttaaa actataaaat atcgctttaa
     6721 aaaattttaa aattttcaag gaaatttatg tttgaatgga tatttagtat tgatgcttgg
     6781 attactttag ctactttaag tgctcttgaa attgtactag ggatagataa tatcattttt
     6841 ttagctattt tagtaagcaa actaccccct gaacatcgtg ataaaggacg tatcttaggt
     6901 ttagcttttg caatgattac aagaatttta cttcttttat ctcttttttg ggtaatgaaa
     6961 cttgtaacac ctttgtttag tgtattgggc aatgaaattt caggaagaga tctagttctt
     7021 ttactaggtg ggcttttctt gattgtaaag tctattaaag aaattaaaga gcaaatttct
     7081 catcaagaag aaagtcaaag tcattttaaa gcaagcaata aactttggat agttgtagct
     7141 gaaattgctg tgattgacat agtgttttcg cttgatagtg ttattaccgc agtaggaatt
     7201 gctcaagatg taaccatcat gattatcgct gttattatcg cagtagctgt gatgcttttt
     7261 gcttctaaac ctatagcaga ttttgttgaa aaatatccaa gcattaaaat tttagcctta
     7321 gcttttttgg tgctaatagg cgtagtttta gttgctgaaa gttttgatat tcatattgat
     7381 aaggcatata tttataccgc tatggctttt gctttagtgg tgcaaatttt aaatatttta
     7441 gatcaaagaa aggaaaaaaa tggctaaaga cactaatgga atagaactta acacaggtga
     7501 tagcgtgagt gtaataaaag atcttaaggt taaaggtgca agtacaactt taaaacgtgg
     7561 aactactata aaaaatatta agctcacttc taaagaaggt gaaattgagg ctagagtaga
     7621 taaatttggc gttattgttt taaaaactga atttttaaag aaaatctagg caaagaatgt
     7681 gcgaatctta cttgttttaa gagggaatta ttacgcagga caagaagaat ttatcaaaaa
     7741 taataaactt caaaattata cacttgattt aaatgctttg cgtcttttat caggaagcgt
     7801 taaaaatata gtcagtgaat ataaaatttt aaatgttaaa aatgatgaag atttgagtaa
     7861 aattttactc aaacttctag aaatgcgtat gcaaaaaggt gagtttagca tcataaacgc
     7921 ttacaacgaa acattaaaaa tttataaaga cttagctaaa caatatcgct ataaaatata
     7981 tgttattgtt tttgatagct ctttaaaaca atgtcaagaa aaaaatcttt tagaagctaa
     8041 aaaaaatgga tatatcattc cttatgctct tttggaaaaa actcaagatt tgctcaaaaa
     8101 aaatccaaaa aaatacccaa ttttagactc aagagactgg aaaaaatgtc tttaccaaat
     8161 gccaaattta agcaaataca aaaaaattca tcatatagga gatttacaag gttgctatag
     8221 tgttttaaaa gaatacatta aaacaatcaa agaagatgaa ttttatatat ttttgggaga
     8281 ttatatcaac agaggtatag aaaatggcaa agtaataaaa tttcttttaa aaatttgcga
     8341 aaaagaaaac gtatgcttat tagaaggaaa tcacgaaaga catcttataa aatgggctaa
     8401 tggagaattg tcaaattcca aagaatttaa tgaaaatact ttaaaggatt ttagaaaaga
     8461 aaaacttact ccaagagatg ctagaaaact ctatcctcat ctaaaagaat gtttatacta
     8521 caaattccaa aataaattca tattttgttc acatggagga gtaaatttta taccctccaa
     8581 acctgaaaaa ataagtttta taccaagcca tgactttatt tatggtgtag gtggatatga
     8641 agacagtcaa aaagtagcaa atcaattttg taatttcacc tcggacaatc tttatcaaat
     8701 ctttggacac agaaataaag aaaaacttcc tatgaaaata gccaaaagag tatttttatg
     8761 cgagggtaaa atagatgatg atggatattt acgcgtagtt acactagatg aaaaaggttt
     8821 tgagtgtata gaaattaaaa accaaattta caaaaagaaa taaagcctaa agaggcttat
     8881 tcttcatctt tatttgtttt tttaaccacc ttaacacgct ctatagaatt cccatccatt
     8941 tttttaactt catagtaaca aagttcatct tcaatgcgat ctcctaccat aggcaagcgt
     9001 cctaaaagat taaatacata accacctata gtaacttgtt ctaaatcctc atcatagttt
     9061 attacaagca tttcttcaac agtttctata tcgcatcgtc cttgaaattc atagatattt
     9121 tcagcaagtt ttttatagct gtcttcttca tgctcgcttt taatttcgcc aataatttct
     9181 tccataatat cttccatggt taaaattcca gcagttccac catactcatc aactactaat
     9241 gcagtatgag agcgttcttt attcatcatt acaagtactt ttgaaatgct gatattttca
     9301 ggaaccaaaa tcaaaggttt aacaaaagta tctaaatttt gacttttatg gtttaattca
     9361 ttttgtatta tatctcgtat gtgtatcata cctaaaatag tatctttaga accatcaata
     9421 taaggaaagc gagtatgttt atgctcacaa atgatttgca tattttcttc gtaacttttt
     9481 tgtttattta gacaaatcat atcttttcta ggagtcataa tctctttagc aacagtatct
     9541 gaaaaatcaa cagcattgcg tatgatctct gtttcaaatt catctaaaac tccacctttt
     9601 tgactctcac ttgctatgat tttaatttct tcttcgctat gagttagctc gctttcttta
     9661 gcaggtttta ttccaaaaag tttcaaactt atagctgcta aaaaatcgaa aattttaata
     9721 caaggcaaaa agagcatcca aaaccaatga agcggtctag ctataaataa aaccgcttta
     9781 tctgcaactg caatagctat actttttggc acaagttctc ctaaaaccac atgtaaaaga
     9841 gtaataatgc taaaagcaat aatgaaagct atagtatgga taataacagt gctaaaacca
     9901 agattaataa gcggaatttc tagcattttt gcaatagcag gctcacctat ccaaccaaga
     9961 gctagagaac ttaaagtaat tcctaattga caagcactaa gatacgtatc aagccttgaa
    10021 gtaacctcca aagctttctt ggcaccagct tttttttctt ttaccatctc ttcaagcttg
    10081 gaacgacgta ctttaacaat actaaattca gacaaaacaa aaaaaccatt taaaaacact
    10141 agagcaagtg caacaacaac cataagcata gaatatcctg catcaaaaga tgctgtagaa
    10201 gtttggttta aatccaaaac ctgactgggg tccaatgaag ctccttaaga aataaaatat
    10261 tattaaacct tattatacac aattaaaagt aaatttaata tttgaatttt ttcttgcatt
    10321 ttataagaaa aaactaagac ttataagaaa tatttttctc aaattctttt aaacgcttat
    10381 atatacttct aagttgagtg atagttgtcc agtttgtgat aaaaacacta aaagagcttc
    10441 gcacttgatc aaatgcatta ttaatctgca ttacaatacc aagtcctata gctccagcaa
    10501 aaagccctgg tgccatgatt aaaaatggca ctataactat catttgctca aataaaatga
    10561 gccaaatatt aaaatatcca taatgtaaaa aaagtctttt atagttaaat ttaagccctg
    10621 taaaaagctc tatcatagtc tcatttttag cgtattcttt gcgattatcc tcagcataaa
    10681 caagctcttt tctaaaagct gcttcagctt tttgattgtt atattcaagt ccaggaagct
    10741 taatacctac aaaccatgac acaaccaagc ctcctaaaga aatcaaaagt gcaatataaa
    10801 caagcaaacc atcaatgttt tttaaaaaat aaaaaaaaga attttcgctt aaatttgcaa
    10861 ataaagcttt actcacaaca tcacttaaac tccataaaat cggaataaat gctacaaggg
    10921 tcatcaaagc ttttataaaa ctaagtccta aactctctac gattttagaa aaattataag
    10981 tatcttcttg aattctttgc gaacttcctt ctatattatc atctttattt ttccaaaatt
    11041 ttaaataaga aaaagtcata gcctcacgcc acttaaaagc atagacgcta gcaaaataga
    11101 tattaattgt agcgattaaa acataaggaa tagcaatagc caaaaaaact aaaatcaaag
    11161 cataaaaatc acttgctgaa taatttggct tttcaatcat agccctagag ttgaaaaaat
    11221 attctaataa attttgataa taatacaatg cgcctttatt gataaaatta gctttttgga
    11281 aattttgctc agctctttga ttagcctctt ggattaaagt ggcattattt tcaagatttt
    11341 cttctatttt ttgcgtagaa ttagaatcca aaagttctat ttttggcttt tgtaaaacat
    11401 tgtaaaaatc actataccat gaattgatcg caacatttaa gcttgtttgt atatataaga
    11461 aaaataacag taaaaaaagt cccaaataag cccataaagc ccatttttta cttttaaaaa
    11521 acgaagagaa cataatcatc acctttaaaa taaaaattct aataaacttt ttttaatgaa
    11581 aagtttattt tttacctaaa tagtctttaa tattgtaatc aataggcata acaaaactga
    11641 ttttatcacc attttttaac atttctttag gcggttttgg caatggagaa gctcttttaa
    11701 ataaacttaa agcttcatca ttaagcgctg cataagggca agatttttta agctctttgc
    11761 ttaagacatt tccgctttca tcaatgctta cgcgaattct tacaacgcct tcttgttttt
    11821 gcattatcgc ttcttgagga tattttttaa atttagtcaa atgagccata agcaaagctt
    11881 gatagctttt aacttgttct ttggcattgc cacttactat agtttgtgtt ttatcttcat
    11941 tactttgtag cggagcactg agcgattcat ttttaaattt tgaattttca cttgcattag
    12001 ctatttcttt ttgagcttgg ttttcatctt gcttttcaat ctttttttga acttttaata
    12061 cagcattttt atcttgagaa ttaagactta ttctttcgtc ttgttttttg tttttatctt
    12121 gagaattact ctttttttga tcaatcgaaa cttcttttaa ttccccgata ggaggctctg
    12181 ataccatcat aatggaagta aattccgctc cttgtttaaa atcaacacca cttgattttt
    12241 cttgaatata aaaagaaaaa agggaaaaca ttaatactaa agtatgcaat atcaaactta
    12301 acacaaaccc aaaaatcaca ctagacttca tactaatcca tctttttact tgaaagagct
    12361 atttttccat agccattctc ttttaatttt tgcattactt gcataatatc ttcatacttt
    12421 acacttttat cgatatgaaa ataaataatt tcttctttat tgcctttggt ttttatatct
    12481 aaagcacttg aaagattttc taggcttaat ttatcatcat taatagccaa agtattatca
    12541 gtatttaaat aaagtatgat gggattttta agcttatcct ctgcttgctg cgaactcttg
    12601 ggtaattcta ttttgataga acttgtgata agaggagtaa cagccataaa aacaatcaat
    12661 aatacaagca taatatctat aaaaggagtt atattgatct cacttaactc ctcttctttg
    12721 tgagccattt cagtttttat cattaaaata actcctatga aaaagtatat agacaaaatt
    12781 tgcaagctca tctaaatggt gcataagttt taaatttttt cttgtaagat aattataaaa
    12841 aagcaccgca gggatagcag ctatcaagcc aaaagctgta gcaaacaagg cttcagctat
    12901 accaggcgca acgactgcca aagaagcatt gccaagattt gctataccta taaaagcatt
    12961 cataattccc caaactgttc caaaaagccc tataaaaggt gcgctagcac ctatactcgc
    13021 aagcaagctc aagccatttt tacttgctgt gatttgcttt gagatggtat tttgcaaacg
    13081 caattccatg cgctctttta tatgatcatt tttatattca cttttttcaa gctcatcttg
    13141 aatttctaaa gataaaacac ctgcaaaatc ctttgtctga tctaattcat tgagattttt
    13201 taattctttt atcttttgta tagacaagtc tagatttttc ttcataaaat aaaattgcat
    13261 aagcttagaa ataaaaactg tccatgctaa aatggaaaat aaaaccaata tataaataac
    13321 accttttacc acctcatcag cattttgata aagactagaa agagaaaact ctattttagg
    13381 tgcttcggtt tctatcttgg gagaatcaaa agataaattt gtatctgttg catttacttc
    13441 tgcatttaaa tttaacaata aaaaacaaaa taaaaacatt ttttttaaca tttgtatatt
    13501 ccttaatatt tatattcaaa acttactata aaagtacgac cgcgagcaga attgctaaaa
    13561 agatagatag gatcacctgc tccattatat tgaagctgat tatctaagga attataagca
    13621 tttaaggcat ccatgtagtt tttatcaaat aaattttgca cctctgctct cattgtgagg
    13681 tttttaaacc attctatatt ccaatataaa tctactataa taggaatttt tggtaagtct
    13741 tgtgtggttg gtttaggata ataaggattg tttggatcct tattccaatc atctgtattt
    13801 ggatttaccc tttttgcttt gcctgtgtat tttgctatac caccaaagct tattttgtca
    13861 tttagtctaa agccaagctc tacatttgca taatcttttg gaagctccat gattttactt
    13921 gccgaaaaag agccaagaag aggtcctgaa gtttgagaaa tagtcgaact tgtatcttgt
    13981 cttgaataca tagctttagc ataagcaaaa cccaagtcat agcttaattc taactccaca
    14041 cccttaaata tagtatcatc agctgaattt aagtgcatat aaaattgcga gcttggagga
    14101 attttacttg gatcttcaag ataaaattgt tcattataaa tataatcttt tatttttgta
    14161 tgataataca cggctttaaa accaaagcga tcatcatctt ttaaaagtcc atgtttaaaa
    14221 gaattaaaac ctatttgcca agtattggct tgttctggtt ttaagaaagg attgatacca
    14281 ttgccttcgt tatttgagaa aaacatttct tgcacattag gggctctatt tgttctcgca
    14341 aaacttacaa agggtgtaaa aagctcgtgt atggcagctg aaagcatgac agaagcattc
    14401 aggcgaagtc catttttatc tatatctgtc gccgcttttg gaaaacacat aaaatttact
    14461 tcatcgcaag caggtctgtg tcctttgata ttccaatcta aaagattcac attagtatca
    14521 agtgtaaaga taccataatt tagactatta tcaagataat aagtaaaaag attttgtttt
    14581 ccacgaggct gaaaaggtat agaatttact ccttgaattg atgtatttaa ggtattttta
    14641 taatcattaa gcaaaatatt tgctccaaag cgtgtgttta gattaaatcc atgccattca
    14701 ccctctaaag tatcacttat atcaaaagta gtggcagtat tttttgcctt tgtgttagct
    14761 atggcatcgt ttgccgcaaa agtagatttt gatccatagg tttgtatgcc ttgattgtag
    14821 gcaataagcg tatttacatt aagccactca ttagggttgt gccaaaaatc aagttgataa
    14881 ttgtcattgt gtatttttct accggcaagt tcgttttgat atctacgata agaaaatata
    14941 gtgtttgtaa aagaatttgg gacatattcg agtttaaaaa gttgagagtt tggtttttgg
    15001 gttaaaaaat ctggatcaaa aggagcgata ttggtatcag ctataccatc tccatcagta
    15061 tcaaccatac tactacctat cttgccaccc ccgcctacag tgtaattttg agtaattctc
    15121 tttgcgctat aaccaaaaag cgcgcccaca tatccattat tttcaagttc agtctttcca
    15181 gccactgcac tcatataact tggtccgatt ccattgcttc cataagaaaa tcgtcctaaa
    15241 aatccaaaga tattgccatc atgtacaata tcatttatac ctatggtctt aaaatttgct
    15301 gatcccatca aggcatttgc tccacctact ccttcaaaag ttccccttgt aacatcaact
    15361 ccgattaaga aatttgtatc aataacagct ccaaaagctg aagttcccgt ttgtgaatga
    15421 aatctagctg gatcatctga tgcactacca taaaaagttt gagtaacacc gtcaatcatg
    15481 gtattaacac gcccaaaacc actcatacca cgaatattta cttgaactgt accttgagct
    15541 tgatctgtgt ttgtgtaggt tccaggtata ctacgcacta tagaatctat actttgtgta
    15601 tctgaaccta taccctctct tgtgcttgtt gctccagaag ttacaaaagg tttttcatcg
    15661 tttttgattt ttgaacctga aatttcaaga ctatcaaatt ctaattcttc agaaaaagca
    15721 aaactagcaa aacataaacc tacagcacaa aataaactta attttttcat tcctccccct
    15781 tataaatcaa aacataatca ctgtctttta aatctatttc tccatagctt aaattcacta
    15841 caactatttt tttactgctt ttaaaatctt gtatatgtaa aggaattcct atttttttac
    15901 ttgtatgata gcttccagct agcaataaaa ctttatttac atgatgaacc aatacatcag
    15961 ccatacgcct gtctttgaat tgttgaattt ccaccaattt atctagtaat tctttatttt
    16021 cttcaggatt tagcttatgg cttaaggata taatgtcaaa aagttgtttt tttacttcat
    16081 ttgtggttga aacataaccc tttaagggct gagccccatt ataaatactt gtaatttctg
    16141 agcgtgaaag atttacaccc aatatttttg actttgaata aaaaaccaca ttgacaaatt
    16201 gctcataatc tttccatttc cagaccttat cccaatttaa tgcattagta agttcattgg
    16261 ctttaatggt ttttttattt ttaaaagctt tatctaagtg attttgctct gtgcttgcta
    16321 acatttctaa agctacatca aagtttatat tttgagaact taaatttcct tctaaggcat
    16381 taaaaatcat aacttgactt atcttatgtt taacctcatc gtgtttttcg ccaagcagta
    16441 tcacatctgc ttttagcaat tctaaaatca tatcttcaaa agaaatcttt ttttgagtat
    16501 gcgtatcaag tatataaaaa tctttatttt cttgaagtgg agatgatttt tgcaaaacag
    16561 cacaagcgct caacataaag cttataaata gaatgcttaa aatagtataa aatttcatta
    16621 ttattgttac tttcttagtg gtttatt
//
LOCUS       DAPIWV010000031        16600 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.032, whole genome shotgun sequence.
ACCESSION   DAPIWV010000031 DAPIWV010000000
VERSION     DAPIWV010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16600
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.032"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(68..4621)
                     /gene="rpoC"
                     /locus_tag="RJ272_000704"
     CDS             complement(68..4621)
                     /gene="rpoC"
                     /locus_tag="RJ272_000704"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDV7381819.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(4614..8750)
                     /gene="rpoB"
                     /locus_tag="RJ272_000705"
     CDS             complement(4614..8750)
                     /gene="rpoB"
                     /locus_tag="RJ272_000705"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDV7381820.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(8859..9236)
                     /gene="rplL"
                     /locus_tag="RJ272_000706"
     CDS             complement(8859..9236)
                     /gene="rplL"
                     /locus_tag="RJ272_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDV7381821.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9257..9736)
                     /locus_tag="RJ272_000707"
     CDS             complement(9257..9736)
                     /locus_tag="RJ272_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDV7381822.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(9888..10589)
                     /locus_tag="RJ272_000708"
     CDS             complement(9888..10589)
                     /locus_tag="RJ272_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDV7381823.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(10644..11069)
                     /gene="rplK"
                     /locus_tag="RJ272_000709"
     CDS             complement(10644..11069)
                     /gene="rplK"
                     /locus_tag="RJ272_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDV7381824.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11095..11628)
                     /gene="nusG"
                     /locus_tag="RJ272_000710"
     CDS             complement(11095..11628)
                     /gene="nusG"
                     /locus_tag="RJ272_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDV7381825.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(11638..11817)
                     /gene="secE"
                     /locus_tag="RJ272_000711"
     CDS             complement(11638..11817)
                     /gene="secE"
                     /locus_tag="RJ272_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDV7381826.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(11836..11911)
                     /locus_tag="RJ272_000712"
     tRNA            complement(11836..11911)
                     /locus_tag="RJ272_000712"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11876..11878),aa:Trp,seq:cca)
     gene            complement(11924..12082)
                     /gene="rpmG"
                     /locus_tag="RJ272_000713"
     CDS             complement(11924..12082)
                     /gene="rpmG"
                     /locus_tag="RJ272_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDV7381827.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12135..13334)
                     /gene="tuf"
                     /locus_tag="RJ272_000714"
     CDS             complement(12135..13334)
                     /gene="tuf"
                     /locus_tag="RJ272_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDV7381828.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(13403..13477)
                     /locus_tag="RJ272_000715"
     tRNA            complement(13403..13477)
                     /locus_tag="RJ272_000715"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13443..13445),aa:Thr,seq:ggt)
     gene            complement(13582..13658)
                     /locus_tag="RJ272_000716"
     tRNA            complement(13582..13658)
                     /locus_tag="RJ272_000716"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13622..13624),aa:Gly,seq:tcc)
     gene            complement(13665..13750)
                     /locus_tag="RJ272_000717"
     tRNA            complement(13665..13750)
                     /locus_tag="RJ272_000717"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13714..13716),aa:Tyr,seq:gta)
     gene            complement(13800..13875)
                     /locus_tag="RJ272_000718"
     tRNA            complement(13800..13875)
                     /locus_tag="RJ272_000718"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13840..13842),aa:Thr,seq:tgt)
     gene            complement(13991..14728)
                     /locus_tag="RJ272_000719"
     CDS             complement(13991..14728)
                     /locus_tag="RJ272_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7381829.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKDKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLQEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHK"
     gene            complement(14730..15386)
                     /locus_tag="RJ272_000720"
     CDS             complement(14730..15386)
                     /locus_tag="RJ272_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7381830.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISTIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWFFVVYFGFPRWFGWDLSSVSVAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(15379..16080)
                     /locus_tag="RJ272_000721"
     CDS             complement(15379..16080)
                     /locus_tag="RJ272_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7381831.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLNLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLYA"
     gene            complement(16095..>16600)
                     /gene="nssR"
                     /locus_tag="RJ272_000722"
     CDS             complement(16095..>16600)
                     /gene="nssR"
                     /locus_tag="RJ272_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HDV7381832.1"
                     /translation="KFFILLKGKIRIYKSTSSDKEITLHYFNPPNFIAEMPAFKKLNY
                     PANAIFEEDGEILEIDFINFQNLCSENKEFNFLLISSLFDKIKILEKKLSQNALDLRT
                     RLLKYLLENEKKLDTISQKQIAIDLNVRAQSLSRVLKELKISELIDTKKGKIEILNKD
                     MIIKELW"
BASE COUNT         5198 a         3373 c         2205 g         5824 t
ORIGIN      
        1 aaaaatttat tttaatgatt tagatacact gtattaatat agccccgaag ggctataaaa
       61 tagagtttta ttcttgttct ttaagtttta aattttgttc gccataaagc cctgttccaa
      121 caggaatcat tctacctaga ataacatttt cttttaaatc ttctaagtag tcaaatttac
      181 ctgctatact tgcttcagtt aaaactttgg tagtttcttg gaatgaagcc gcagaaatca
      241 cactatcact tccaatcgct gctcttgtta cacctaaaag cacaggctcg gcaatagctg
      301 gttctccacc cattctaatg attctttcat tttcttcacg gaatttacgt cttgaaacca
      361 aatcaccttc aataaatttc gtatgtccac tatctacaac ttttacttgt cttagcattt
      421 gagaaacgat aacttctata tgtttatcag aaatcacaac accttgtccg cgataaactt
      481 gctgaatttc agaaatcaaa taataatgca aggctttttc acctaaaatt ttaagcacat
      541 catgactcga aacaactcca tctgtaagtt tttcacctgc atgaataaac tctccatctc
      601 ttacttgaat atgttttgat ttgtcgatta aatactcagc acttgttcca tcttctgctt
      661 ggataataat tctttcttta gaacgcaaag gcttatcaaa acgaacaaca ccatcaattt
      721 ctgcaatcac agccgcattt tttggttttc ttgcttcaaa aagttcagaa actcttggaa
      781 gacctcctgt aatatccttt gatttagctg ctgcttttgg agtttttgct aaaatatctg
      841 cttgagcaat tttatcgcca tcatgaacaa aaataacggt ttttggttca aggtgataac
      901 gcacagcttt atcacctttt cctgcaatta ccaaagttgg tctaactccg ctaggtaaat
      961 actcattaat tactaaagaa cgcttacctg tagcttcatc aatttgctca tcagcactat
     1021 aacctgcttc aatatcctca aagcttacaa caccatcaat ttctgcaatg atagtattat
     1081 tataagcatc ccattctgca atcacttttc tttctttttt aggagcactt gcaatgatag
     1141 tatttgcgtc atcgattttt tcactatcgt taaattctat cttagattct cttgggatat
     1201 agtgtctttt tgcttctcta tcattttcat cagcaatcac tacaaagaat cctttttctt
     1261 taacaatatc acctttttta acatttttta ctctatctaa accatcgcct ttaaggatgt
     1321 aaaatttgag tgttcctttt tcgcctgctt tgatattttg aactacaggc tcgccatctt
     1381 ctactaaaat ttcactcgca aaaggaatac gatttggtac attccaaccc tctttaatca
     1441 cttctacgat actttcattt tcttctactt gcatgccgct ttgatatggc aaataaagtt
     1501 ttccatctat actgccactt acacctgcta attcatttgg tttagcaaga tcgtattttc
     1561 ttaatatgta ttttacttct tgttttttat ctttaataga aacaatcaca tcttcatgaa
     1621 tattttctat attaatcaca cctttaaatg gagttttgat ttttggctcc acaagtaaaa
     1681 ccgccgcatt tctacgattt gctacgatat ttttaccttc tttgttttta taagttttaa
     1741 gattataaaa tcttataaaa ccttcttttt gtgcgcttac ttgtctatct tgtaaatccg
     1801 tacttgcagt tcccccgcta tggaaagttc ttagagttag ctgcgttcct ggttcaccga
     1861 tagattgagc ggaaataatt cccactgctt cgcctggttt tactaattta ccttcaccaa
     1921 gattgatacc ataacatttt gcacaaattc cttttttagc tttgcaggta ataggagtgc
     1981 ggatattgac actttttata ccgctttcgc caagaatttt tgctttttcc tcatccatta
     2041 aagtaccttc tgcaaaaagc acagaatttg taataggatc aatcacatcc tcagctaaaa
     2101 ccctgcctaa aattctttct tctaaagttt ctataataga actatctgcg gtaatttcat
     2161 tgatttcaac accctcatgt gttccacaat cttcaatggt aatttttaca ttttgtgcaa
     2221 catcgatgag ttttcttgtc aaataacccg catttgctgt tttaagagcg gtatctgcaa
     2281 gaccttttct agcaccgtga gttgaaataa agtattcaag aacatttagc ccttcacgga
     2341 aatttgaaat aataggcgtt tcgataatag aaccatcagg tttggtcata agtcctctca
     2401 tcgcagcaag ctgagaaatt tgagctgcac tacccctagc accagaatct gccatcatat
     2461 aaatagagtt aaaaccttct ttatcttttt ctacaagctt catcatttct tttgaaagaa
     2521 cattgtttgt acttttccaa atatcaatga ttttattgta tctttcccct gaagtaatca
     2581 aaccgagatt ataagaattt tgaatttctc ttacttgttt ttttgcttca tcgatagctt
     2641 tttgtttatc attaggaaca ataatatctg caatcgaaat tgaaatacct gctttagttg
     2701 catattcaaa acctaaattt ttaagtctat ccaagaaact tgctgtaatc tctaaaccac
     2761 cttgtttata aacataatcc acaagcgcag caatgtcttt tttctttaag actttattcc
     2821 aactattttc aggcacaaaa tcaggcaaga tggatttaac aatcaatctt cctgctgtag
     2881 tggtaatctt tctaccatct accatagttt gtatgctcgc atgaatatcc aaacacttgc
     2941 tttcaagtgc catcatcact tcatcaatgc ctgtacaaat tttatgcgaa cctttagcac
     3001 ctgctttttc caacgaaaga taataaattc ctaaaaccat atcttgcgat ggaacggtta
     3061 cagacttacc gcttgctggt aaaagaatat tcattgatga aagcataagc actttacatt
     3121 ctgcaatagc ctcttgagaa agcggtacat gcactgccat ttgatcccca tcaaagtctg
     3181 cgttaaatgc tgcacaaacc aaaggatgaa gttgtatagc cttaccttcc actaaaacag
     3241 gatgaaaagc ttggatagaa agcttatgca aagtaggtgc acggtttagc ataacaggat
     3301 gtccctttac tacctcttct aaacattccc aaacttcatt ggttttattt tctatcattt
     3361 ttttagcttg ttttactgtg gttgcataac ctttttcttc aagcttagct aaaagatgtg
     3421 gcttaaaaag ctctaaagcc atttttttag gtaaaccgca ttgatccatt ctaagttttg
     3481 gacctacaac aataacgcta cgacctgaga aatccaccct tttacctagt agattttgtc
     3541 taaaacgtcc ttgtttccct ttgatgattt cacttaaaga tttcaatggg cgtttatttg
     3601 ctccttttac agcattagca cgacgaccgt tgtcaaaaag cgcatcaaca gcctcttgaa
     3661 gcattctttt ttcatttctg ataatgattt caggtgcatc aagttccata agttttttaa
     3721 gacgtgtatt tctattgata acacgacgat ataagtcatt cacatcagaa actgcaaatt
     3781 tcccaccatc taaagccact aaaggacgca aatctggcgg taaaactgga agatttgtaa
     3841 tcatcatcca ttcaggacga tttggtacag cttcgtcgct atcggtattg gcgtttaaat
     3901 ttgaatttaa gaaattttct acaactttta agcgtttaat gatagttttt ttcttagcct
     3961 ctgaatttgt agcccccatt tcttctttaa gttgatttaa aagcgctaca agatctaaat
     4021 ttgcaagtaa atcacgaaca acttctccac ccattcttgc tttaaagccg ctattttcat
     4081 agcgttgcat taaattttga tattgctctt cgttcaaaac atcgcaatat tccacttttt
     4141 tagtactttc attatcatag aaagcatcac ctgggttttc aacaatataa gcttcataat
     4201 aaagcacgcg ctcaagatct ttcatcttaa cacccaaaag cgttcctata cggcttggaa
     4261 gagaattaac ataccaaata tgagccacag gagttacaag ctcgatatgc cccattctag
     4321 aacgacgcac ttttgaattt gctacttcaa caccacattt ttcacactta acgcctttaa
     4381 aacgcatttt tttgtattta ccgcaaagac actcataatc tcttataggt ccaaaaatct
     4441 ttgcacaaaa aagcccatct ctttcaggct ttaaggttct ataattaata gtttctggtt
     4501 tttttacttc tccataagac catgatttga ttttttcagg acttgcaagt ctcagttgaa
     4561 atgcttcaaa atctctaggt cttgcatctt ctttaatttc tattacttta aatttactca
     4621 ttatcttcat ccttatcaaa aatctcaaca tctaaagcaa gagatttaag ctcattggtt
     4681 aatacaaaaa atgtttcagg aattcctgtt gctggaacat tttcaccttt tgtcaatgct
     4741 ttataagcac taaatctacc ttctacatca tctgatttta tggttaacat ttctcttaaa
     4801 gtgtgagccg ctccataagc ttcaagtgcc caaacttcca tttctccaaa tctttgtccc
     4861 ccaaagagtg ctttaccacc cacaggttgt tgggtaacca agctataagg tcctgtactt
     4921 cttgcatgaa ctttttcatc aaccaagtga tggagtttta gcatatacat acatcctaca
     4981 tgaacacgct ctgcaatttt ttcccctgtt cgtccatcgt aaagttctgt tttgccatcc
     5041 atatctatct tagccatttt aaaaagcttg ctaaattctt ctatatttac accttcaaaa
     5101 acaggagtag aaaatttaac tcctttactc cagtctctag catagtttaa aagctcttca
     5161 tcgcttaagc ttttaataaa ttctttttcg tttgcaagtc ttggaataga acaaatttca
     5221 agcattttcg ctcttaattc tttaagaaaa tctttttgct ttctatcaaa aatttcttga
     5281 atttgatccc caagtctaag tccaactaaa cctaaatgac tttctaaaat ttgacctata
     5341 ttcatacgac ttggaacgcc aagtggatta agcgcaatat ccacgctctt accatttggc
     5401 aaataaggca tatctacttc aggaactata gttgaaacta tacctttatt tccatgacgt
     5461 cctgccattt tatcaccgac tttaagcttt ctttttgtag caatataaac tttaacaagc
     5521 ttaattaccc cacttggtaa aatatcatct ttttctaaaa tttcaagctt ttcatcgtgt
     5581 tctgctttta attttttctt ctcattttgg aaatgatttt ttaaatcatc gtattctttt
     5641 tgaatctctt tagaataagc tttaatcaaa gttgttaaag taaaacgatt gattttttca
     5701 agttcgctaa tatctgcagt ttgtcctttt ttataatttt tatctccaat tttttgatcg
     5761 ctatttaaag aggctttgga aagaagagca caaacacgaa gcatttcttc tctatccatc
     5821 atcaaaagtc tatcatgatg ctctttttct aaagccattt tttctttatc ataagatttt
     5881 attgcgcgat catctttttc atagcctttt ttagtgaaaa ttttaacatc cacaacaaca
     5941 ccctctaaag aagcggttgc ataaagggat ttattcacaa catgtcctgc tttttctcca
     6001 aaaatcgctc ttaaaagtct ttcttcagga gttggtttaa cctcaccttt tggagaaacc
     6061 ttacccacca aaatcatacc tggtttgata tgggtaccaa tttttgcaat accgctctca
     6121 tcaagatgcg caacatcttc ttcttttaca tttggaatat ctttggtaat ttcttctata
     6181 ccgtctttta gttctcttgc ttcaatttct ttttcataaa tgtgcacgct tgtaaaagta
     6241 tcttcacgaa taattctctc acttacaact atagcatcct catagttata accattccaa
     6301 ggcataaaag cgattaaagc atttttacct atagcaagtt cgccttgatc catagaagga
     6361 ccatctgcga taatttgtcc tgcttttact atatcacctt ttttaacaat agggtgttga
     6421 atataatttg tattttgatt ggttcttaaa tttttctcca tagtgtaatg gtcaataaat
     6481 ggacctttat catcttcacc taaaatgaaa atgcttttat tatccacttt ctcaaccaca
     6541 ccgccacgct ttgctttaac agcttcccaa gcatcacgcg caataatttg ttccatacct
     6601 gttcctacta tcggagctga agcagtaaga agtggcacag cttgacgttg catgtttgaa
     6661 cccattagtg ctctgtttgc atcatcgtgc tctaaaaacg gaatcaaaga agccgcaacc
     6721 ccaacaacca tacctgagca aagatcgatt aattgcactt cttcgcgtct tgcaagtata
     6781 gtttcaccat cttgtctagc ctcaacaaat tcttctacta tattgccttt agcatcaacc
     6841 ttagttgaag ctggtgcgat aaataagcct tcttcttgtg ttgctgtaag ataaacaact
     6901 tcattagtca ctttaccatt tacaactttt ctatatggtg cttcaacaaa gccaagttcg
     6961 tttacttttg cataagtaga aagagtgtta atcaaaccaa tattttgacc ttcaggtgtt
     7021 tcaactggac aaattctacc ataatgtgtc gcgtgaacat cacgcacttc aaaacctgct
     7081 ctttctttta caagtccacc ttcaccaagc gctgataaac gacgcttatg agtaacctcg
     7141 cttaaagggt tggtttgatc cataaattgc gaaagctgac ctcctgtaaa aaattcaatg
     7201 atagttgtag taatcatttt aggattgatt aaatcataag gcattacttt atcaagatcc
     7261 gcatttaaag aagtaaattt atctctgatc gccttttgca tttttgcaag acctaaatga
     7321 agttcattgg ctaaaagttc acctatagaa cggatacgac gatttcctaa atgatctcta
     7381 tcatcaatat gtcctttacc attttttact ttaattaaat attttgcagt tttaataata
     7441 tcttcattag tcaaaacagt aacatactca ggtacttcaa gacctaattt atggttcatt
     7501 ttcatacgac ctaccttggt aagatcgtat ctttcaggat tgaagaataa atcatttaca
     7561 aaagccttcg ctgcatcttt taccacaggt tcacctgggc gcataacttt gtaaattcta
     7621 atcgcagcta aatcattttc atcatcgata ttttcacttt gtttaagaag ttttagagtt
     7681 tctccatctt gagcaaagga gttaataatc gctgcatcaa cgccattagc caagtcattt
     7741 gctatatcaa aacttttttg ctctttaatc ttagcaagct tactctcatc taacaaagtt
     7801 aaagaatcaa ataaaacctc tccactttct ttatcaataa taggatttgc taaataacga
     7861 ttaagtaaaa tttctacagg atattctatc cattttaaac cgtctttaat aagctgttct
     7921 gcttttttct ttgtaagtct ttttccagct tgatgaacga tttttccttt ttcatcttta
     7981 atatcatatt ctattctatc cataaaatca tttggattaa attctgttaa aaatttatct
     8041 tttttcacat gtatagtctg aataggataa aacaacttaa taatatcttg ttttttatac
     8101 cctaaagctc taaaaagcat agttacagga acttttctac gcttattgat tcttacatac
     8161 aaaacatctt tggcatcgta ttcaaaataa agccacgaac cacgatcagg aataatttgt
     8221 gctgtataaa caagcttatt tgcaaccgtt gaactttctt cttctttaaa aataacacca
     8281 gggcttctat gtaattgatt tacaaccacc ctctcaaccc cattaatgat aaaagataca
     8341 cgatctgtca ttaaaggaat ttcgcggata taaatttctt gttctttaat atcttttacg
     8401 ccaacttttt cccctgtttt ttcatctttt tcatgcagag taagacggat tttcattttt
     8461 aaatttacag aataagtcaa acctctttcc atgcattcgc gaatggtata ttttggcttg
     8521 cctatttcac tactaacata ttcaagactc aatctatttt gcggatcatg aataggaaaa
     8581 attgatttaa aaactttttc tataccactt tcaccattat caagatttaa aaaataatca
     8641 aaactctttt tttgtaattg tagaagattt gggatttcta tttgttttga aatgtttgag
     8701 aagtctactc ttaaacgatt tcctaattta ttatctaaca tatcgcacat acctcatggt
     8761 aaattttgta aatttaaaaa agaagaccta aaaattaggt aaaaataaaa aaagaagact
     8821 tgccttggca aatcttcttc taactttaaa gcttaaaatt acttaagttc tactttagca
     8881 ccagcttctt caagttgttt tttagcttcc tcagcttcag ctttagccac accctctttt
     8941 agagttgaag gagtttgctc aactgcatct tttgcttctt taagaccaag gcctgtaaga
     9001 gcacgaacga ttttaataac ttcaatcttt ttagcaccgc catcagttaa aacgatatca
     9061 aattcagttt tttcttcagc agcagctgca gcaccaccag ctgcagcacc accagctatc
     9121 attacaggag cagcagacac accaaatttt tcttcaaact cttttacaag ttctgataac
     9181 tcaagaacac ttaaatttga aatatattct aatacatctt ctttagagat tgccattttt
     9241 tatcctttta tttaatttat tcagattctt ttttattttt aagcgcattt aaacctattg
     9301 tgaaattggt aattggcgca ttccaaactt gcaaaagcat agcaagcaac tcattgcgtg
     9361 aaggcatttt agcaagagct ttaaccttag caacatctgc aacttcgcct tcaatatgag
     9421 ctgttttgat ttcaaattta tcgttatttt cttcaaattt agcagctact tttgaaacac
     9481 ctagctgatc ttcgccccaa agataaatat ttgtatcttt aagaactaga cctgttttac
     9541 cggaattatt aagagcaatg ttagccaaag tatttttaac aatttgaact tttacattgt
     9601 tttctcttgc attatttcta agctcttcta gtttttttgt gctaagacct ctgtaattac
     9661 aaactacaat agcttcacta gctttaaaac cttcttcaag tttagcaata atctcaactt
     9721 tttcgcttct agtcacattt tctcctttcc gattgagatt tcaagtagag tggaaatcca
     9781 attaagctta cgcctcgact atcttcaatc taaaataaac atctcaaaaa atcaaaaatt
     9841 ttttcaaatg tttattttaa aacaaaagag ttgcaaaaaa gcaactctta tttcatatca
     9901 agcaattctt gtgtttcaag ctttacagaa gggctcattg tcaaagataa agccgcattt
     9961 ttaatatatc tacctttagc tgcagcaggt ttatgtttgt taattgcctt tacaaaagtg
    10021 ctaacattgt cccataattg ttctttggaa aaacttactt taccaagacc tgcatggata
    10081 tttccttgct tatcaacacg gaaatttacc tgaccacttt ttgcattatt aactgcttga
    10141 gcaacatcca tagtcactgt tccagtttta ggatttggca ttaaaccttt tggccctaaa
    10201 attctaccaa ctttaccaac aagtcccatt aaatttggag tagcaatcaa aacatcaaaa
    10261 ttcatattac ctttttgaat ttcttctact aaatcatcgc tacccacaat atctgcacca
    10321 gcatttttcg cttcatcagc ttttgcgtct tttgcaatta cagcaacacg aactttttta
    10381 cccgttccag caggtaaaac aacagatcct cttaccattt gatctgcatg tcttggatca
    10441 acattaagtt ttaaagcaat ttctacagtc tcatcaaatt tagcagactt taaagtcttt
    10501 attgtatcaa ttgcatcgct taaagcatac tctttatttg aatcaatttt ttgtgataat
    10561 tcttttaatc tttttgctat cttagccatt tattttctcc gcattttaaa gtgctaccgc
    10621 cttttacctt ggcggtgaaa ggattaatct acgatttcaa cacccataga acgagctgaa
    10681 cctgcaataa ttttagcagc ttgatctcta tctttagtat ttaaatctgc aattttctta
    10741 tctactattt ctaaaacttg agcacgagtt aacttaccca ccttattttt aagtggatta
    10801 tccgtacctt tagaaattcc agctgctttt ttgatcaaat ccgtagctgg cggttgtttt
    10861 gtaataaaag taaaactttt atctgcataa acagtgataa caacagggat attaaaacct
    10921 gccatatctt ttgttctttc attaaaagcc ttacaaaact ccataatatt aacaccttgc
    10981 tgacccaaag caggaccaac aggtggtgat gggtttgctt ttgtggcagc aatttgcaat
    11041 ttaatttcgc ctacgacttt tttagccata acaaatctcc ttacttgata taaattaaat
    11101 tattttctca acttgagaat ataagatctc cactggagtt gaacgtccaa aaatagaaac
    11161 atttaatttt aataaaccac gaaccatatc atactcttct acaattgcag taaagtttgc
    11221 aaatggccct tctgtgattc tcacattttc cccttcttca aaagaaatct ttggtttagg
    11281 cgctgcacga ttgtgaactt tttccaaaat caaattaata tctttttctg ttaaaggggt
    11341 tggctttttg gattctccaa taaaacgacc aacctttgga agagattgaa tgcgatgcca
    11401 aagctctgta tttaaatcaa gaagtgcaaa aacgtatcct gaatacaaac ttctttcgct
    11461 aatcttctcc tttccattct taaattcaat aacatcttca gttggaacaa caatttcttt
    11521 aagttgttct tcaattccgt tatcttttac taaattttca atggctcttt taactgccat
    11581 ttcactgcca gcataagttt gaattgcata ccatttatga gtactcattt actctcctta
    11641 tacgatcgca gaaacaatag aggacataag ccaatccact aacgccaaaa acaaagaaat
    11701 caccacaaca accacaaaaa ctgtaatata ggcatttctt acctgttctt ttaaaggaaa
    11761 aattactttc cttaattcgg cttttgataa tttaaaataa gttattaatt tttccattta
    11821 tttaaacctt aattatggca gggcaagagg gattcgaacc cccaaccatc ggatttggaa
    11881 tccggcgctc taccgttgga gctattgccc taagggcgca agcttaactt tttagcttaa
    11941 cttctttgtg aagtgtatgt ttttttaatc ttgggcaata tttttttaat tctaattttt
    12001 cagtagtatt tttactattt ttataggtgc tataattaat atcaccacat tcttcacact
    12061 ttaaaccaac tttaattctc atttcaattt tccttaaaaa attaaagcca agcttttaac
    12121 ttggctttat taaattattt aataatttta gaaacaacac ctgaaccaac agttttacca
    12181 ccttcacgaa tagcaaaacg agttccttct tcaagtgcta ctggagcgat caagcttaca
    12241 gtaattctca cattttcacc tggcataacc atttcaacac catcagctaa tttaatcgaa
    12301 cctgtaacat cagttgttct tacataaaac tgcggtctat agttgttaaa gaatggagta
    12361 tgtctaccac cttcatcttt atttaagata taaacttcag cttcgaagtc agtgtgtgga
    12421 gtaattgatt ttggtttagc aagaaccata ccacggataa cttcttcttt tttagtacca
    12481 cgaagaagaa cacctacgtt atctcctgct tcgccttgat ccatttcttt tctgaacatt
    12541 tcaacacctg ttacagttgt tgtttgagta tctttaatac caacgatttc gatagtatca
    12601 cctactttta caacaccttt ttcaattcta cctgtaacaa cagtaccacg acctgaaatt
    12661 gagaaaacgt cttcaattgg catcaagaag tctttttcag tatcacgagt tggagttgga
    12721 atatagctat caactgcagc cataagatcc ataatttttg ctgaccattc accatcttgt
    12781 ccagctttag cttcttcaag agcttttaaa gcagaaccag aaataatagg tgtatcatcg
    12841 cctgggaaat cataagagct taataattct ctaatttcca tttcaactaa ctctagaagt
    12901 tcagcatcat caaccatatc tgctttattc ataaaaacaa caatatatgg aacacctact
    12961 tgacgagaaa gaagaatgtg ctctctagtt tgtggcatag ggccatctgc agcagaaaca
    13021 accaagatcg ctccatccat ttgtgcagca cctgtaatca tgtttttaac ataatctgcg
    13081 tgacctgggc agtcaacgtg tgcatagtga cgattgtctg tttcatattc aatatgagaa
    13141 gtagcaatag taataccacg ctctttttct tctggagcat tatcgatatt atcataatct
    13201 ttaagctctg ccaaacctct tctagaaaga acagcagaaa tagcagctgt taaagtagtt
    13261 ttaccatggt caacgtgacc aatagtacca atatttacgt gtggcttatt acgtgaaaat
    13321 ttttctttag ccattttttt cctccgtata aaaaataaat tgagcaaagc aagtcttata
    13381 tctatataat tttttcaatt catggagctc atagcgggaa ttgaacccgc gacctctccc
    13441 ttaccaaggg agtgctctac ctctgagcta tacgagcgct cagaaaaatt atacacaata
    13501 acagacaaca aaaactctta aatgggatat atactgtaag ttaaaggttt taaaatacag
    13561 ctcccagttc ttttaaatta ttggagcggg aaacgggact cgaacccgcg accctcagct
    13621 tggaaggctg atgctctagc caactgagct actcccgcaa agcatggtgg tgagtcgtgg
    13681 attcgaacca cggaaggcga aagccagcag atttacagtc tgccctcgtt ggccacttga
    13741 gtaactcacc ataaaaatat tgctttttca atattctggt caaacactgc taaaataaat
    13801 ggagctggtt aagggacttg aacccccgac ctgctgctta caaggcagct gctctaccaa
    13861 ctgagctaaa ccagcaaaaa taaaagtaag attataactc aaaaaaaaaa ttttgtcaag
    13921 acttttttag tttttctata aaatttttag tcttgtaaat tttattatca taaaccaata
    13981 ttatttttat ctatttgtga taatcaaata aatttaaaaa tttctttgct ctttcgcttt
    14041 ttggattttt aaaaaaactt ttaggatcat tttcttcgat gatttttcct tcatccataa
    14101 aaataatttt atctgctaca gctttagcaa aacccatttc atgagtaaca ataagcatag
    14161 tcataccctc ttttgcaaga tttaacatca cttctaaaac ttctctgaca atctcaggat
    14221 ccagcgctgc tgtaacctca tcaaaaagca ttaactcagg attcatgcat aaacttctta
    14281 ctatagcaat tctttgtttt tgtcctccgc taagttctct tggataagca tgaattttat
    14341 gcaaaagccc caccttttca agccaaattt tagcctcttg taaaacctca tctttctttc
    14401 ttttttgcac tttcataggc cctaaaagta tattttcttc aacacttaaa tgctcaaaaa
    14461 gctcataaga ttgaaaaacc ataccaactt tttgacgcat tcttggccat tctttgaaat
    14521 ctttatctat tttttcattg tcaatataaa tattaccact tgcaatctct tcaagcccat
    14581 taatacaacg caaaagcgta gattttccgc acccactagg acccaaaatc accacaactt
    14641 ccttatcctt aacttctaaa ttaatatctt ttaaagcatg atgcgaacca taatactttt
    14701 gtaaattttc tatttttagt atactcattt tagctccatt ttttctctaa ttttcttgaa
    14761 tataaagtga taggataaca aagtataaaa aagataaaaa aaatcaaacc ataaataata
    14821 aaaggtgcaa aatcatttct attatgaaat tctataattt gttgccctac ttttacaagc
    14881 tctaccgcgc cgattaaata agcaaaggtt gtacttttga tcatgcgagt aagtaaattc
    14941 atgctcatag gagttaaacg acgcatagct tgtggaataa taacataagc aaaactttgc
    15001 accgtattta aacctaaaga tgatgcactt tcatactgat gttttggaat actctgtaag
    15061 gaaacacgca ccaaatccat catctcaaaa caaccccaaa tgctaaaaac aataatagct
    15121 acacttacag aactcaaatc ccacccaaac catctaggaa aaccaaaata caccacaaaa
    15181 aaccatacta aaagtggcat aacacgtaca aattctaaac ctaaacgaca aaaagcatag
    15241 atataggtat ttttaaaact cattaaaatt cccaaaaaca acccgcctat cgaagtaata
    15301 atagtgctga taaatgaaat ttcaagagtg acaaaaagcc cttgccagag tcttaaaagc
    15361 gtatcggtat ttaaaagttc aagcataaag caaccttttt tcaaacttta gcaaaataaa
    15421 agacaaaggc aaaataatgc acaaatatcc cataaacaac aaaaacaata gctcatctgt
    15481 cttataggtt aaggaattta aactcttcat taaattcacc aaatctggca aggcaataat
    15541 gctaacaact gaagtttctt tgattaaaaa tataatatta gcactaatac ttggcataga
    15601 aatagccaaa gcttgcggca aaatcacata acgcaaattt ccaaattttg aaaaacccaa
    15661 agaaagtcct gcttcaaact gctgttttct tatggcttca aatcccgccc ttaaactctc
    15721 agccatataa gaacccccta aaaaactaag tcctactata gcacaagcaa aagaaggtct
    15781 taaagtttct tctacgctta aacaaattaa attgagcggt ggaatttgct ctaaatgtat
    15841 attaaattta ggcaaagcat aatataagaa aaaaagttga attaataaag gcgtatttct
    15901 tgaaaactct atataaagct tgcaaatatt ttctaaaatt tttattttaa aataactcat
    15961 taaaatgcaa aacaagccta ttattaaaga aaaaataatt ccaaaaaagc ttagttttat
    16021 cgtaagccaa gcagctgtta aaaaagcggg agcttgagct aatataaaat caaaatccat
    16081 tctctacctt aattttacca aagttctttt ataatcatat ctttatttaa aatttcaatt
    16141 ttaccttttt ttgtatcaat aagttctgaa attttaagct cttttaacac tcgagataaa
    16201 gattgcgctc taacatttaa atcaattgcg atttgttttt gcgaaattgt atctaatttt
    16261 ttttcatttt ccaaaagata ctttaacaat ctcgttctta aatctaatgc attttgagat
    16321 aatttctttt ctaaaatttt gattttatca aaaagtgagc tgataagtaa aaaattgaat
    16381 tctttatttt cactgcataa attttgaaaa ttaataaaat caatttccaa aatttctcca
    16441 tcttcttcaa agatggcatt agcaggataa tttaattttt taaaagcagg catttctgct
    16501 ataaaatttg gaggattaaa ataatgcaaa gtaatttctt tatcacttga tgtactttta
    16561 taaatgcgta tttttccctt gagtaaaata aaaaattttt
//
LOCUS       DAPIWV010000032        16329 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.033, whole genome shotgun sequence.
ACCESSION   DAPIWV010000032 DAPIWV010000000
VERSION     DAPIWV010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16329
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.033"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            34..927
                     /gene="msrP"
                     /locus_tag="RJ272_000723"
     CDS             34..927
                     /gene="msrP"
                     /locus_tag="RJ272_000723"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDV7381833.1"
                     /translation="MIITPENLYKKRRDFLKFGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISNEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYIEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            927..1499
                     /locus_tag="RJ272_000724"
     CDS             927..1499
                     /locus_tag="RJ272_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HDV7381834.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(1464..3176)
                     /locus_tag="RJ272_000725"
     CDS             complement(1464..3176)
                     /locus_tag="RJ272_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7381835.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSAIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFRDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(3176..4000)
                     /locus_tag="RJ272_000726"
     CDS             complement(3176..4000)
                     /locus_tag="RJ272_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381836.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFYPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQSLLHEKLK
                     NTCDECFEDLKNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(4011..4487)
                     /locus_tag="RJ272_000727"
     CDS             complement(4011..4487)
                     /locus_tag="RJ272_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381837.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKQVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(4496..4987)
                     /locus_tag="RJ272_000728"
     CDS             complement(4496..4987)
                     /locus_tag="RJ272_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDV7381838.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(4977..5912)
                     /locus_tag="RJ272_000729"
     CDS             complement(4977..5912)
                     /locus_tag="RJ272_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HDV7381839.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDTCKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFIHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIINENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(5915..7084)
                     /locus_tag="RJ272_000730"
     CDS             complement(5915..7084)
                     /locus_tag="RJ272_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HDV7381840.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGVFKEGENYEYWFKLVPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENIGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(7094..7699)
                     /locus_tag="RJ272_000731"
     CDS             complement(7094..7699)
                     /locus_tag="RJ272_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HDV7381841.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(7816..8028)
                     /locus_tag="RJ272_000732"
     CDS             complement(7816..8028)
                     /locus_tag="RJ272_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDV7381842.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            8187..9563
                     /gene="ccoG"
                     /locus_tag="RJ272_000733"
     CDS             8187..9563
                     /gene="ccoG"
                     /locus_tag="RJ272_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HDV7381843.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFALPFIRINENHFFLLSFNHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYEGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            9550..10182
                     /gene="cmeR"
                     /locus_tag="RJ272_000734"
     CDS             9550..10182
                     /gene="cmeR"
                     /locus_tag="RJ272_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HDV7381844.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINARLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            10277..11380
                     /gene="cmeA"
                     /locus_tag="RJ272_000735"
     CDS             10277..11380
                     /gene="cmeA"
                     /locus_tag="RJ272_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HDV7381845.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            11380..14502
                     /gene="cmeB"
                     /locus_tag="RJ272_000736"
     CDS             11380..14502
                     /gene="cmeB"
                     /locus_tag="RJ272_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HDV7381846.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            14495..15973
                     /gene="cmeC"
                     /locus_tag="RJ272_000737"
     CDS             14495..15973
                     /gene="cmeC"
                     /locus_tag="RJ272_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HDV7381847.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGIEQNEDTSKNIKEESKNLDISFRE"
     gene            complement(15996..16247)
                     /locus_tag="RJ272_000738"
     CDS             complement(15996..16247)
                     /locus_tag="RJ272_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381848.1"
                     /translation="MNKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKVYEITDADLDKDF"
BASE COUNT         5689 a         2618 c         2249 g         5773 t
ORIGIN      
        1 tttaataata aaaattttta acaaggaaaa attatgatta taactcctga gaatttatat
       61 aaaaaaagaa gagatttttt aaaatttgga gcaggtgctt taataagttc aagcgtgctt
      121 gcttctaaac tatctgcttt aaatttcaca agcgatacta atccaaacaa acttgaaatc
      181 agcaatgaag aactggctac aaattatgtc aatttttatg aattttcaac agataaaaga
      241 aaggctgtat cattagcaca aaatttcaat actcaaaatt ggaaaatcga tatcagtgga
      301 gaaatagaaa aacctttaac tttaagcatg gaagatattt taaaattccc gctagaagaa
      361 agaatttatc gttttcgctg tgttgaaact tggtctatgg tggtaccttg ggtaggcttt
      421 gaattgcgtc gtttgattga aatggcaaaa cctacaagcg aggcaaaatt tgttaaattt
      481 accactcttt tagataagag tcaatttccc gatcaagacg ctttatttcc aactatagac
      541 tatccttata tagaaggact tcgcatggat gaagctatgc atcctcttac cttgcttgca
      601 gtaggaatgt ataaaaaagc cttaaagcct caaaatggcg ctccaatacg ccttgttgtt
      661 ccttggaaat atggctttaa aagtattaaa tctatagtta aaatagaatt taccaaagaa
      721 cagcctaaat ccacttggga aagttacgct ccaagtgaat atggttttta tgctaatgtc
      781 aatcctaatg tttctcatcc tagatggtct caagctaacg agagggcttt aggagacttc
      841 tttaccaaac ctactttaat gtttaatgga tatgaaaaag aagtggcaag tttatataaa
      901 aacatggact tgaaagtgaa tttttaatgc agacaaaata ctttaaattt cttgcttatt
      961 ttagctttat cataagttta atctatggct tttatcatat cataaaagcc tttgattttg
     1021 taaaagaagc ctatatttac accggaatat ttgctttaat ctttttaaat ttaagtcttt
     1081 tattttcttt acttaaattt aaaaaaacaa aaaattatcc taaaatttta ggtatttttg
     1141 cagctttttg ggcgattttg cactttttaa attattttat ttttgataga aatgctcaaa
     1201 ttttaaggct tttcgatgat atttcacatc gtttattaga agcaagtgga tttatcgcat
     1261 ttttaatcat atttttaatg cttttaagtt cttttaaaat ctttaaaaaa cttagtaaaa
     1321 tcagaaaact aggatattta tgcttagttt tggcaagtta tcattatttt ttaaccccaa
     1381 aaattcctat gttttgggaa tggagtgctt taattatagc tttgttttat tttatagttc
     1441 gctatacaaa aacattaaaa aagttaaaat ccaacaatct tacttttatc aaaacttgaa
     1501 tttaattctt tttgtatgct ttctataaaa tcttgcattt taaaaacccc atcttttgat
     1561 acagctactt tcaaagctgt attcttcacc accattaaaa tttgtgctcc acttaattca
     1621 taatttgata aaatatttat atcaaaatct ttttcaaata atgctttttt aggtagaaat
     1681 ttttcccaaa ttttaagtct atctctaaaa tcaggttttt taaattctat cttataatca
     1741 aatcttcttg aaaatgcact atctaagctt tctaaaaaat ttgtcgtagc gataatcaca
     1801 ccactaaaac gctcgatttg ctctaaaaat atattttgca tttgattatg cattttatca
     1861 ctaccactac ttccatctac acgcgtactt aaaaactgat cggcttcatt gagaagtaaa
     1921 ataggacttt gtttgcaagt ttgcacgata tttttataag tatcaaaaat ttttcttaca
     1981 ttttgctcac tctctccaac ccatttgctc aaaattttag aacagtcaaa actaagaaca
     2041 gattttttca ttgatttagc catagctaaa gctgacatag tttttccagt accagcagga
     2101 ccataaaaaa taattttagc ttctatattt ttattactct ttatacccca agaatgaagt
     2161 ctttctagga cttttttatc ttgttgtttt aaaatatttt ctaaaagctc ttttgtattt
     2221 tcaggcataa taatatcatt gatgtcagtg cttggttcta taagctcgaa aatatcttga
     2281 tcttttaaaa cactttcaat tttgattttt ttactttgtt ttggttcaaa atttataatt
     2341 ctttgtaaaa tttcatcaat aataaaaaaa cttttagaaa tatccccaaa agcatttaaa
     2401 tattcatcat actcgattaa gtttaaaaga ggagcatttt cttgtaatag ttttttattt
     2461 ttatgccttt ctaaatcatt ttcactgatt aaagaaagta aagaattcat ttctctagaa
     2521 atcgaacttt cattacttaa ggcgtattct tcttttaaaa gtgctagaaa aataatttgt
     2581 tctttatgtt caagattgta ttctttaaaa atatcagcca atacattata aaatttactt
     2641 ttttttagtc tttctttgat atgtttttca taaagtttaa tttgattttt tatttcacta
     2701 ttataagcac ttttttgtat aaaacttaat ctttcgtata attgaatacg cgcaaattca
     2761 tcttttaaat attctaaata atctgcataa gcctcttgtt tctcaaagtt taaacgaggt
     2821 tttgcttcta aaaattctaa aaaatattca cttagactaa gctcactttg caataaggca
     2881 agagttaatg tttgagtttt attattttct aaacttttaa aaaaactcga attttgattt
     2941 acaaaacctc tttcgataag tttttttaaa tcctccaaag catcaagata aagatactta
     3001 tcatttccaa aaattgccga taataaagta aaggcattga tagaagaaat agaaacgaca
     3061 taatttctgc aaagctctct aagaatcaaa gcctcatttt tagcacactt aagctcttta
     3121 taaatttgag tatcttctat atttttcaaa cttaaaaaat tttttaattt ttccattatt
     3181 ttttaaattc cttaagctca tcttcgttaa attctacgca aatattttca tctaaaaaat
     3241 gaccttcaaa aggtagataa caaattttta attttccatt attaagcaaa aaattattat
     3301 taaattgtaa atttttcaga tcttcaaaac actcatcaca tgtattttta agcttctcat
     3361 gtaaaagact ttgaaatttt tgattttcag tattatacaa atcatttagt tttacaaacg
     3421 cgtgagcatt aatatcataa acaaaattat tcaactctaa aatagcacgg ctcataccat
     3481 cttcataaaa ataataccat tcttcaaaac taatttttcc atcttgtaaa aaaataggct
     3541 tttggcgaat ttgttcaaaa ctaaatacac ccttatgaac aggataaaat tctttaaaat
     3601 catcattaaa acctataaaa tcaagactac gctttatacg aatgccatct tgcgtttcaa
     3661 caagttctaa agtagttgtt cctaaatttt ctccttgaaa atttttatta tcatatgtaa
     3721 gcattttaga agaattgatt ttatattttt tacgctcatc ctgccaaaaa tcatttgtct
     3781 taacgagcgg aatctctaaa tttccattta tatcatcaat aattaaaaaa ctagaacttg
     3841 tttgattttt atccctgtca aaaagtggag tcataggtgc attatcataa actatggcaa
     3901 aaatttcttt atcctgcaaa tgataaaaat acaattcacc tttataaact tgcgctaaag
     3961 ctagatttac aaagcaaaat accagtaaaa aaaatttcaa actctatcct tcaattttga
     4021 atatgcgtta agataatttt agtatgtgaa attttatcaa aaaaacttac tttattatca
     4081 caaacttgat aaaaaatttc ataatttttt gcttttaaat tttgttcaaa accacaatca
     4141 gttttttcta aatttttacc ctgccataaa gcatttgcct ttaaaatatc acttaaaata
     4201 tcatcataat atacattttt aaaaaatttt tgattaaaca cttgtttatc ataacacact
     4261 gcattgatac aaattttatc tttgattttg agttcaaaaa aagcttgccc tagtttataa
     4321 acttctaaat ttaaagcatt attttctttt tttaaaaaag ctgcgtcatt gatttttatc
     4381 ataggagaag caatcaaaac catcaagctt tgactcgaaa aattttgatt tttcacacta
     4441 caagcacaaa gaaaaaaaat aaaacacaga gctaaacaat gcttcaaatt tgaccttatt
     4501 taagattttt aaaactgata tttaactcta aatcaagctc ttttacaagc ttcatcacag
     4561 cttgtaaatc atcaatttgt tttgctacaa cacgaatttc ttcaccacga atcgaagaat
     4621 taactttaag tttgctatct ttgatagctt tattgatttt tttggcattt tcactatcaa
     4681 tagcatcgtt tgctttcaaa tttaaacgaa acattgctcc actttcacga gaaagctctt
     4741 taatagcatt aggattaatt cctcttttga taagtttaga aatcactata tcttttaaaa
     4801 catcaagttt tccttcacta gaagaactga gtttaaaaat actctctttt tcgcttaaat
     4861 caatctcaca cttaattcct tttaagtcat aacgactatc aagttctttt ttagcttgtt
     4921 caaaagcatt ttttaactct tgtttatcta aagctgctga aatatcaaaa ctatgttcac
     4981 ttgccatttt ctatccattc ttttaaatta ttataaacta tatccattaa agcatttaaa
     5041 gcctccttgc tcgcccacgc aacatgagga gtgataataa gattttcttt atttttaatg
     5101 cttaaaagtg gatgattttt catcataggt tcaatttcta aaacatcaag ccctacacga
     5161 atattttttt catctatgat tttagctaaa tcattttcat tgataatccc acctcttcct
     5221 acattaatca aaatcgcatt atcttttaaa agctttaatt cttcaaaggc gagtaaattt
     5281 ttagtttttt catttaaagg tgcgtggata ctaataatat cacaagtttt caataaatct
     5341 tttaattcca aatgtataaa atctgcgttt ttattagctc cactcgtaga ataataataa
     5401 atttcggctc caaaagcctt tgaaattttt gccacttctt tacctatggt tcctaaacct
     5461 ataataccat gttttttacc gcttaaggtg tttaaaattc tactataatc tgtaaaaata
     5521 ggactttcac accatttacc ctctttgctc catttgtcat aataaagcac ttgatttaaa
     5581 aaagcaaaca taaacgcaaa agtatgttgc accacactca tagtagaata cccagcagca
     5641 ttttttacaa taataccttt ttctttagca tactcaatat cgatattatt aacccctgta
     5701 gcagtttcta aaatgagttt taaattttta caagtatcaa tcacatcttt atcaattaca
     5761 accttgtttg tcatggcgac attagcatct tttaaacgct ctatggtttg ctctttattt
     5821 gttgtagtat aaatttgcaa agaaccaaat ttttcaaaaa cacttaaatc ataatcccct
     5881 aaagttgccg catctaaaca aacaattttc atttctaatc ctttataata tgtcctacaa
     5941 atttagaata attatcaagt acaagtcctc cttttctaaa tcctaagcca cacccttcat
     6001 aagcaaagaa aacacctgct tgatagtatt cattttcaca tgaattaaac tctacatatt
     6061 cttgataaat agccttatta ttcccgtaag gacctatatt ttcatgcaaa gtttttccat
     6121 ctttaattat actgatattt gcaccttctc taccaaaaac aggtttttta acatagtttt
     6181 taccttccaa aggagtatct tttgtttcta aaagtaaagg atgatttgga taaagttccc
     6241 atagaatttt taaaattccc ttagattgaa ataaaagcgt ataagcagga tttaaaataa
     6301 ttgctctttg attacgcata atttgagtta aaagcatggc aagttcaccc tcttctatgg
     6361 ctatatcttc ccaaggaaca agcttaaacc aatactcata attttcgccc tctttaaaaa
     6421 caccttcttc actaaattcc acctcatcta caaaggaaaa attagtttga aaacctgctt
     6481 cattggctat atgagaaagt aattttgtag tgatttcttc ttctttactt cctgcaacac
     6541 ttgaaaaaag aattttccat ccttgataat gctcttcaaa cccttcaaca ctttcatcaa
     6601 gagtaataag tcttttaaaa ttatccatca aactttcata aatactatta aattgcgcgc
     6661 tttcatccat tccattttgt tttaaaagtg cccattgtaa aatcgcactt tcaaaaagag
     6721 cagtaggggt atcagcatta aattctataa gttttatagg cttgccatca agtccacccg
     6781 ctaaatcaaa acgcccatat aaatgccaat gaacctcatt ttcccaactc atcttaatcg
     6841 catcaataag attaaaagga attccaagct catcaaaacg atcattatca atcacttctt
     6901 gcgctgcagc aataaacata tcataaagct catttaccgc ttcataataa gcattagctt
     6961 cactttcctt aacacaaact aacttattgc taatataatc acttccatct tcatctgtat
     7021 gccaagaaaa acctatattt tccaaataat ctttttgaag tttgtctact tgtagtaatt
     7081 gcattattta tccttaagag ccaaaagaag aactagaact tgtggcttta gagcctccac
     7141 caaaaaaacc tgatttttta gcacttgaag cagagcttgt tgtgcctgct ttattaaaac
     7201 tattaacact cctttgataa gcactttgat ttgaaaaagc accgcgttgt tgattagcaa
     7261 aattttgatt attgaaaagt tttgaaccta tccaacttcc caaaatagca cctgcagcac
     7321 ttgcgagtaa agtttctcct aaactcaatc ccccactact gatttgccca ttgtctttag
     7381 ttaaatttga agttccattg tcaattttag ctgcttcttc tttaatcaaa gcatccattt
     7441 cttctttgga taaaattctt tctgtaccat taagatcttt taaaactacc cttgtttcat
     7501 cacttggata ttgatctttg attttatact gccctggagc tgtttcttcg ataattacaa
     7561 aagctccttg agcattagct gcttgattta aagtatctgc attgtcatta ttacttccac
     7621 aacctgctaa agcacctcca gcaacagctg ctaaaccacc tatcatacca atttgaatga
     7681 tttttttgat ttttttcata gagtttatcc taaaaacaga aaatttaaat tagaaatttt
     7741 aacaaaaaat aataaatact ttttaatacc aaatgaagtt cgtagatata aaaaaagccc
     7801 tttcgggctt ttgggttaga gtcttgactc gtagcgtcta agcatataaa gtcttttaag
     7861 catttttttg cgtgctgaaa ttttttgttt tttgcgaatt tcagtcatag gctcgaaaaa
     7921 tcttcttgct cttacttcag ttacaactag atttctatct acttgttttt tgaatttacg
     7981 atacgcttca tcaaaagact cgttaggatg caccttgatt cctggcacag tcctcaccac
     8041 ctttctgtgt aaatttttgt tgtgaaatat aattataaaa cacttcttat taattctaac
     8101 ttagaaagca tttaaaaatt gttttagttt ttatcggtta taatccttaa ttacaaagtg
     8161 ctaaaaatta taattaaggt ctaaaaatgc aaggacacat tacaaactat acaaaaaaac
     8221 gatattttgt atatttaatt gcaagtatta tcatatttgc cctacctttc ataagaatta
     8281 atgagaatca tttttttctt ttaagtttta atcactctaa attaaaccta ttttttattt
     8341 ctttttcaac acaagaattt tatctcatgc cttttgttct tatatttctt tttttattta
     8401 ttttttttat tacaacttta ggtggaagaa tttggtgtgc ttggagttgt ccacaaacga
     8461 tttttagagt tatatataga gatatcatac aaactaaatt tcttaaaatt cgcaaaaata
     8521 tcaataacaa acaaaaagaa tatgagggac aatattttaa aaaatttctt ggagtaataa
     8581 ttttttattt tatatcttta gttgctgtta gtaatttact ttggtacttt attcctcctg
     8641 aagatttttt caattatatt caaaatcctg gcgagcatct acttttactt ggaattttat
     8701 tttgtgctag cttacttttt actttggata ttacctactt acaagaaaaa ttttgtgttt
     8761 atgtctgtcc ttatgcaaga atacaatctg taatgttcga tcatgataca atgcaagtga
     8821 tctacgatga aaaacgcggg ggcttgatct atgatggaca caccaaactt cataaaaaac
     8881 cgcctgaggg agaatgcata ggttgcgaag cctgtgttag tatctgtcca actcatattg
     8941 acatacgcaa aggaatgcaa cttgaatgta ttaattgtct tgaatgtgcc gatgcttgct
     9001 ctaaggttca aagcaaattt aatcgtccaa gtttgatcaa ttggacaagt gcaaaagcta
     9061 ttgaaacgcg ttctaaggtt cattatttaa gatttagaac gatagcatat tttatagttc
     9121 ttttaattgc tttactggct ttaatcatca tgggaagcaa aaaagaaagc atgcttttaa
     9181 atatcaatcg tagtagtgaa ttatataata tttcaaatgt taaaggtgaa ttagtcattt
     9241 caaatgctta tacctttttg tttcaaaata cagattctaa acctcatgaa tattatttta
     9301 cagcaaattt agaaggaata aatgatggaa ttgaaatcat aagaccaaac aaacctttta
     9361 aattaaaagc aggagaacaa gtcaaaaaaa tagttgttat cagggctaca aaaaatttag
     9421 caaataatga taaaaaagac gtaatctttc ctttacatat aaaagcttac gcaaaggata
     9481 atgaaaaaat ttcggttttt agaaaaagta tatttgtata ccctaaaagc actcttataa
     9541 aggataaaaa tgaactcaaa tagaacacca tcacaaaaag ttttagccag acaagaaaaa
     9601 atcaaagcag tggccttaga gcttttttta acaaaaggat accaagaaac aagtttgagt
     9661 gatattatta aattatctgg aggatcttat tctaatattt atgatggttt taaaagtaaa
     9721 gaagggctat tctttgaaat tttagatgac atatgtaaaa aacactttca tcttatttat
     9781 tccaaaacac aagaaattga aaatggcact ttaaaagaaa ttttaacttc ttttggttta
     9841 gcttttatag aaattttcaa tcaaccagaa gctgtagctt ttggtaaaat tatctattct
     9901 caagtttatg acaaagatag acatcttgcc aattggatag aaaataatca acaaaatttt
     9961 tcctataaca tacttatggg ttttttcaag caacaaaata attcttatat gaaaaaaaat
    10021 gcagaaaaac ttgctgttct tttttgcact atgttaaaag aaccttatca tcatcttaat
    10081 gttttaatta atgctcgttt aaaaaataaa aaagaacaaa aagaacatgt tgaatttgtt
    10141 gtaaatgttt ttctaaatgg aatcaatagc tccaaagctt aaaaaataat tttattaacc
    10201 aaaattaaga tataattagc caaaaatttt tgtaataaaa attacaattt ttaatttaat
    10261 ttttcaaggc aaaaccatga aattatttca aaaaaatact attttagctt taggtgttgt
    10321 gcttttactc actgcttgca gcaaagaaga agcaccaaaa atacaaatgc cgcctcaacc
    10381 tgtaacaacc atgagtgcta aatctgaaga tttaccactt agttttactt accctgctaa
    10441 acttgtcagt gattatgatg tcattataaa acctcaagtt agtggcgtaa tagaaaataa
    10501 actttttaaa gctggagata aagtaaaaaa aggacaaaca ttatttatta tagaacaaga
    10561 caaatttaaa gctagtgttg attcggctta cggacaagct ttgatggcta aggcaacttt
    10621 cgaaaatgca agcaaggatt ttaatcgttc taaagctctt tttagtaaaa gtgcaatctc
    10681 tcaaaaggaa tacgactctt ctcttgctac atttaacaat tcaaaagcta gtctagcaag
    10741 tgctagagca cagcttgcaa atgcaagaat tgatctagat cataccgaaa taaaagctcc
    10801 ttttgatggt actataggag atgctttagt taatatagga gattatgtaa gtgcttcaac
    10861 aactgaacta gttagagtta caaatttaaa tcctatttac gcagatttct ttatttcaga
    10921 tacagataaa ctaaatttag tccgtaatac tcaaaatgga aaatgggatt tagacagcat
    10981 tcatgcaaat ttaaatctta atggagaaac cgttcaaggc aaactttatt ttattgattc
    11041 tgttatagat gctaatagtg gaacagtaaa agccaaagct atatttgaca acaacaactc
    11101 aacactttta ccaggtgctt ttgcaacaat tacttcagaa ggttttatac aaaaaaatgg
    11161 ctttaaagtg cctcaaatag ctgttaaaca aaatcaaaat gatgtttatg ttcttcttgt
    11221 taaaaatgga aaagtagaaa aatcttctgt acatataagc taccaaaaca atgaatatgc
    11281 cattattgac aaaggattac aaaatggcga taaaatcatt ttagataact ttaaaaaaat
    11341 tcaagttggt agcgaagtta aagaaattgg agcacaataa tgttttctaa attttttatc
    11401 gaaagacctg tttttgcttc agttgttgca attatcattt ctttagctgg agctataggt
    11461 cttacaaatt tacctataga acaatatcct tctttaaccc ctcctacagt taaagtaagt
    11521 gcaacttaca caggagctga tgcacaaacc attgcttcaa cagttgcaag tcctatcgaa
    11581 gatgcaatca atggcgcaga taatatgatt tacatggatt caacttcaag ttcttcagga
    11641 actatgagtt tgactgttta ttttgatatc ggtacagatc ctgatcaagc caccatagat
    11701 gttaataata gaatttcagc cgcaactgca aaaatgccag atgcagttaa aaaacttgga
    11761 gtaacagtta gaaaaacttc ctcaacaaca cttgctgcaa tttctatgta ttcaagtgat
    11821 ggctcaatga gtgcagtaga tgtatataac tatatcactt taaatgtttt agatgagtta
    11881 aaaagggttc caggagttgg agatgcaaac gctataggaa atcgtaatta ttctttaaga
    11941 atttggctca agcctgattt attaaataaa tttggaatca cagctactga tgtaatttct
    12001 gcggttaatg accaaaatgc ccaatacgca actggtaaaa ttggcgaaga acctgtaacc
    12061 caaaaatccc cttatgttta ttcaatcact atgcaaggaa gactacaaaa tcctagtgaa
    12121 tttgaaaaca ttattttaag aacaaataat gatggatcat ttttaagact taaagatgta
    12181 gctgatgtgg aaataggatc acaacaatac agctcacaag gacgattaaa tggcaatgat
    12241 gcagttccaa ttatgatcaa tcttcaatca ggggcaaacg cattgcatac agcagaactt
    12301 gttcaagcta aaatgcaaga actttcaaaa aattttccaa aaggtttaac atataaaatt
    12361 ccttacgata caacaaaatt tgtaatagaa tcaatcaaag aagttgttaa aacttttgtt
    12421 gaagctctaa ttttagttat cattgttatg tatatgttct taaagaattt ccgtgcaaca
    12481 cttattccta tgatagctgt acctgtttca ttgttaggaa cttttgctgg actttatgtt
    12541 ttaggtttta gtattaactt gcttacgctt tttgctttaa ttttagccat agggatcgtt
    12601 gtagatgatg cgattatagt tgtagaaaat attgatagga ttttacatga aaatgagcaa
    12661 ataagcgtaa aagatgctgc tatccaagcg atgcaagaag ttagctctcc ggttatttca
    12721 attgttcttg tgctttgtgc tgtttttgta ccagtttctt ttatatcagg ttttgttgga
    12781 gaaattcaaa gacaatttgc tcttacctta gctatatctg taaccatatc aggttttgtt
    12841 gctcttacct taacaccttc tttatgtgca ctctttttgc gacgcaatga aggagagcca
    12901 tttaaatttg taaagaaatt taatgatttt tttgattgga gtacctctgt atttagcgca
    12961 ggagtagcat atatcctaaa aagaaccatt cgttttgttt taattttttg tattatgctt
    13021 ggagcaattt tttatctcta taaagcagta ccaaattctt tagttcctga agaagatcaa
    13081 ggtttgatga ttagcattat taatcttcct tcagcttcag cactccatag aacaatttca
    13141 gaggttgatc acataagcca agaagtttta aaaactaatg gagttaaaga tgcaatggct
    13201 atgataggat ttgatctttt tacaagttca ctcaaagaaa atgccgctgc aatgtttata
    13261 ggtttgcaag attggaaaga tagaaatgta agcgctgatc aaattatagc cgaacttaat
    13321 aaaaaatttg cttttgatcg caatgcttca agtgtattta taggcttacc tcctatacct
    13381 ggattaagta tcacaggcgg ttttgaaatg tatgttcaaa acaaaagcgg aaaaagctat
    13441 gatgaaatac aaaaagatgt aaataaactt gttgctgtgg ccaaccaaag aaaagagcta
    13501 tcaagagtaa gaacaaccct tgatacaact ttccctcaat acaagcttat aattgataga
    13561 gataaattaa aacactacaa tcttaacatg caagatgttt ttaacacgat gaatgcaact
    13621 ataggcactt attatgttaa tgatttttct atgctaggta aaaacttcca agtaaatatc
    13681 cgcgcaaaag gtgattttag aaatacacaa gatgcattaa aaaatatttt tgtaagatca
    13741 aatgatggaa aaatgatacc acttgattct ttcttaactt tacaaagaag ttcagggcct
    13801 gatgatgtaa aacgattcaa ccttttccca gcagcacaag ttcaaggtca acccgcacca
    13861 ggttatactt caggccaagc tatagaagcg attgctcaag tagcaaaaga aactttaggg
    13921 gatgattatt ccatagcttg gagtggatca gcttatcaag aagtttctag caaaggaaca
    13981 gcaagctatg cttttgcttt aggcatggta tttgtctttt taatcctagc tgcccaatat
    14041 gaaagatggc ttataccttt agcagttgta acagctgtgc cttttgcggt atttggatca
    14101 tttttattgg tatatttaag aggatttagc aatgatatat attttcaaac aggacttttg
    14161 ctcttgattg gactttcagc taaaaatgct atcttaatcg tagaatttgc aatggaagag
    14221 cgctttaaaa aaggtaaagg agtttttgaa gcagctgttg cagcagcaaa acttcgtttt
    14281 cgtcctatca taatgacttc tttggcattt acttttgggg tcttgccaat gattttcgca
    14341 acaggagcag gaagtgcttc aagacactct ttaggaacag ggcttattgg tggaatgatc
    14401 gcagcatcaa ctttagcgat attctttgtg cctttatttt tctatctttt agaaaatttt
    14461 aatgaatggc tagataaaaa aagaggtaag gttcatgaat aaaataattt caattagcgc
    14521 tatagcaagt tttactcttt tgatttcagc ttgctcttta agtccaaatt taaatattcc
    14581 cgaagcaaac tatagcattg ataataagct tggagcctta tcctgggaaa aagaaaacaa
    14641 tagctctatc acaaaaaatt ggtggaaaga ctttgatgat gaaaatttaa ataaagtggt
    14701 tgatttagca cttaaaaata ataatgattt aaaacttgct ttcatacaca tggaacaagc
    14761 tgctgctcaa ttaggtatag attttagcag tttgttgcca aaatttgatg gtagcgcaag
    14821 cggaagtcgt gcaaaaacag ctataaatgc tccaagcaat cgaactgggg aagtaagtta
    14881 cggtaatgat tttaaaatgg gacttaattt aagctatgaa atcgatcttt ggggaaaata
    14941 tcgcgataca tatcgcgcct caaaatcagg ctttaaagca agtgagtatg attatgaagc
    15001 tgcaagactt tctgttattt caaatacagt tcaaacttat tttaatcttg taaatgctta
    15061 tgaaaatgaa aatgctctta aagaagccta tgaatctgca aaagaaattt ataggattaa
    15121 tgatgaaaaa tttcaagttg gtgctgtagg tgaatatgaa cttgctcaag caagagccaa
    15181 cttagaaagt atggctttgc aatataatga agcaaagtta aataaagaaa attaccttaa
    15241 agctttaaaa attttaactt caaatgattt aaatgacata ctttacaaaa atcaaagcta
    15301 tcaagttttt aatcttaaag aatttgacat tccaactgga atttcaagca ccatcttgct
    15361 tcaacgtcca gatattggct cttctttaga aaaattaact cagcaaaatt atcttgttgg
    15421 agtagctcgc acggctttct tacctagcct ttctttaaca ggattattgg gatttgaaag
    15481 cggggattta gataccttgg ttaaaggagg ttctaagact tggaatatag gtggaaactt
    15541 tactctgcct atttttcatt ggggtgaaat ttaccaaaat gtaaatttag ccaagcttaa
    15601 taaagatgaa gcttttgtaa attatcaaaa tactttgatt actgcttttg gagaaattcg
    15661 ctatgcttta gtagctagaa aaactatacg cttacaatac gataatgcac aagcaagcga
    15721 acaatcttac aaaagaatct atgaaattgc taaagaacgc tatgatatag gagaaatgtc
    15781 tttgcaagat tatttagagg cacgtcaaaa ttggcttaat gctgcggttg cttttaataa
    15841 tattaaatat tcttatgcca attccatagt agatgtaatc aaagcatttg gtggaggaat
    15901 tgagcaaaat gaagacacga gtaaaaatat aaaagaagaa tcaaaaaatt tagatatatc
    15961 ttttagagaa tagttcgttc tattctctaa ataaattaaa aatctttatc taaatctgca
    16021 tctgtaattt cataaacctt gtaaatagca ggcaataatt ttcttatagc ataatcaaaa
    16081 tgataaaatt gcttatatac ctcttctgga tttaaatttt tagcattctt aaaatcaaat
    16141 acttcagtat cattgatttt ggcaatattt tcatcaaaat aagagtaaaa ctctgctctt
    16201 tgtttaaaca aagcatttaa attttgaaca attttggctt tattcatttt atatcctttt
    16261 taaataattt aaaaacttaa tcccattttt tatttaagaa ataaaaaatt tactcctatt
    16321 ttagctaaa
//
LOCUS       DAPIWV010000033        15805 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.034, whole genome shotgun sequence.
ACCESSION   DAPIWV010000033 DAPIWV010000000
VERSION     DAPIWV010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15805
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.034"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..501
                     /locus_tag="RJ272_000739"
     CDS             <1..501
                     /locus_tag="RJ272_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381849.1"
                     /translation="AYTKWDPTTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDAL
                     ISKDLSLNEFKTKYIDFKQRHDEFVKEYEMAMGDKMLLSSDNEIITQQSEKPFKAIQG
                     ESKNKETYKDDSTRNELVKKLLEGKFSTSEELELLFGMKFSDDAGEFNKILSLNSAPK
                     IIDIKA"
     gene            complement(526..1452)
                     /locus_tag="RJ272_000740"
     CDS             complement(526..1452)
                     /locus_tag="RJ272_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HDV7381850.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIANAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFHEIKSGKSVDEKFKKEIILTHFDEMIKHYKDQGISIFRKHLHEYSK
                     GHKDASAFRDSVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(1449..2435)
                     /locus_tag="RJ272_000741"
     CDS             complement(1449..2435)
                     /locus_tag="RJ272_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381851.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFETYTQDLLLEKDLKTTFQTK
                     EFRAVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNALYLQNE
                     KNHLKNDSNYAYSKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEILTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSIKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLTLREKNIKIDLNQLIQ"
     gene            complement(2425..2787)
                     /gene="dksA"
                     /locus_tag="RJ272_000742"
     CDS             complement(2425..2787)
                     /gene="dksA"
                     /locus_tag="RJ272_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HDV7381852.1"
                     /translation="MKKNEIQNFKNILEERKKTILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFTISTNLKEELIEIENSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(2799..3248)
                     /locus_tag="RJ272_000743"
     CDS             complement(2799..3248)
                     /locus_tag="RJ272_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDV7381853.1"
                     /translation="MQVNIFCIQKSDEFKTWSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(3250..4092)
                     /locus_tag="RJ272_000744"
     CDS             complement(3250..4092)
                     /locus_tag="RJ272_000744"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HDV7381854.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(4101..4823)
                     /locus_tag="RJ272_000745"
     CDS             complement(4101..4823)
                     /locus_tag="RJ272_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HDV7381855.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDENQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKARPKQMILVPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNNQAFKSNLSDPKYSPLTPNLFPKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALTIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(4823..7042)
                     /gene="bamA"
                     /locus_tag="RJ272_000746"
     CDS             complement(4823..7042)
                     /gene="bamA"
                     /locus_tag="RJ272_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDV7381856.1"
                     /translation="MKKHLISICALVAIANAATIKDIKFIGLNHLSNTSAMNITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKITITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIIEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NTQTVKDLRSSTGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLINPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWNEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDNTNSFEFNLGTRF"
     gene            7120..7947
                     /locus_tag="RJ272_000747"
     CDS             7120..7947
                     /locus_tag="RJ272_000747"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HDV7381857.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALRL
                     GLIHELIEFKDLALCDMIFIATPVNAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNVLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            8027..9400
                     /locus_tag="RJ272_000748"
     CDS             8027..9400
                     /locus_tag="RJ272_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7381858.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHVKDDESSIKNVQIILHKDDNTSTMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKVTPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKECIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEELIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIIYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            9400..10284
                     /locus_tag="RJ272_000749"
     CDS             9400..10284
                     /locus_tag="RJ272_000749"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDV7381859.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDDRGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDVPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            10323..10724
                     /locus_tag="RJ272_000750"
     CDS             10323..10724
                     /locus_tag="RJ272_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HDV7381860.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            10733..11611
                     /locus_tag="RJ272_000751"
     CDS             10733..11611
                     /locus_tag="RJ272_000751"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDV7381861.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKMQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            11636..11893
                     /locus_tag="RJ272_000752"
     CDS             11636..11893
                     /locus_tag="RJ272_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HDV7381862.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIAPKAEHGRSGYL
                     CQNCIEKEDKILQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            11880..14495
                     /gene="infB"
                     /locus_tag="RJ272_000753"
     CDS             11880..14495
                     /gene="infB"
                     /locus_tag="RJ272_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDV7381863.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKVEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSIAASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPPK
                     KIEKKEVEEVSSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEEIDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            14492..14854
                     /gene="rbfA"
                     /locus_tag="RJ272_000754"
     CDS             14492..14854
                     /gene="rbfA"
                     /locus_tag="RJ272_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDV7381864.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            14844..15266
                     /gene="rimP"
                     /locus_tag="RJ272_000755"
     CDS             14844..15266
                     /gene="rimP"
                     /locus_tag="RJ272_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDV7381865.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGKKIYRIYVQKEGGVNLDDCA
                     KLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW"
     gene            15313..>15805
                     /locus_tag="RJ272_000756"
     CDS             15313..>15805
                     /locus_tag="RJ272_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HDV7381866.1"
                     /translation="MWNLDEKKLQEMLDGFLNFQEVWTLEKVKNMTLEEYTNIKKDNP
                     NRDDFTFWIESKLDNLGSIWGGSAFKFGIYRRNDESQKESSSGRLYSQNYAWIAKYGN
                     NENEAFNNIKEKIIQIIQASQDNNLKTIEKIDFGDAIKWKIAFHYQDVKNIKIVNIFS
                     KNVL"
BASE COUNT         5599 a         2133 c         2725 g         5348 t
ORIGIN      
        1 gcttatacaa aatgggaccc aactacggag aaaatgatgt taggtttttt tgtttcttat
       61 tctaagatgt ttcatttggg ctacgacatc atcaaaaaag ccgatgaatt ttataaagaa
      121 tttgacgcac ttataagtaa agatttaagc ttaaatgagt ttaaaactaa atacatagat
      181 tttaagcaaa gacacgatga atttgtgaaa gaatacgaaa tggctatggg tgataaaatg
      241 ttgctttcta gtgataatga aattatcact caacaaagtg aaaaaccctt caaagccatt
      301 caaggcgaaa gtaaaaacaa agaaacttac aaagatgata gcacaagaaa cgaacttgta
      361 aaaaaactat tagaaggtaa atttagcact agtgaagaat tagaacttct ttttggtatg
      421 aaatttagtg atgatgcagg agaatttaat aaaatccttt ctttaaattc tgcaccaaaa
      481 attatagata ttaaggctta agatttttta aattataaaa atcaatcaag ttaaactaaa
      541 aaattcttct attttttttc gcatttcttc gacattgtcg atacgattaa cgctatctct
      601 aaaggctgaa gcgtctttat gccctttaga atactcgtgt aaatgcttgc gaaatatact
      661 tatgccttga tctttgtagt gttttatcat ttcatcaaaa tgagtgagta tgatttcttt
      721 tttgaatttt tcatctacac ttttaccact tttgatttca tgaaatatcc aaggatttcc
      781 tacgcttgca cgccctatca tgagtccatc gcattttgtg attttataaa cttctttagc
      841 gttttgtgcg ttgatatcgc catttgcaat cacaggaatt ttcacgctcg ctttagcatt
      901 ggcaatggat tcataatcgg cttttccgct ataaagctgt tttcttgtgc gtccatgaat
      961 acttacaaaa tccaccccca agctttcaca aattttagcc attttttcag gatatttttc
     1021 attaaatcct agtcgaaatt tcacacttgt aaggcttttt ttattgtttt ctttaatcac
     1081 tcctacaaga tttttaaaaa gctctaaatt ttctagcaaa gcacttcctg cacattgttt
     1141 aacaacttta ttgacagggc aaccgcaatt aaaatcgatc ccatctacaa aatccatttc
     1201 atttagcatt tgtactgctt tttttagcac ttctttatct ccacctgcaa tttggactat
     1261 ataaggattt tctaattcag ctctttctag catatgtaga gttttagaac tttcataaac
     1321 taaggcatta gaacttatca tttcacttat ggtaatatca gcaccaaatt tttttactac
     1381 attacgaaaa ggcagatctg aaaaacctgc cataggggct aaaaacaagg gttttttgct
     1441 aaaatctatc attgtatgag ttggtttaga tcgattttga tatttttttc acgcagggtt
     1501 aaaaaggctt taaaatcatt aaatttctta tcatcattgt gaatttgctc tcttagctca
     1561 tctaaaagtc caaattcagc taaaagatat aaatacgctc ttaaagcttc acttttttca
     1621 tttttaattt tattgaaaat tcctaaaata gcatcaggat ttaaaagttt gatacttagt
     1681 tttgctgcgt taagatagtc tttttcgctt agtatattgt gtgaaagtaa aacttcatat
     1741 tctgctacac taagttctaa atttccttct ttaaaacgct tgataagtgt gagaatttca
     1801 gaaggctttt tagggatttt tacattttta atttgctcat aactagcttt ttctataaga
     1861 gtgttaaaag caatttcttc aaattcatct ttgatttcat taaggttttt aagtttgcta
     1921 taggcgtaat ttgaatcgtt tttgagatga tttttttcat tttgcaaata taaagcattg
     1981 ttattttcaa gtttaaattt gctaaggtta aaaaattcgt ttttatttaa accatcaata
     2041 agatctaaaa tttcattgat tttatttgag tgtggaattt tttcatgtgt ttttatggtt
     2101 ttaaaaagtt gtgccacagc tctaaattct ttcgtttgaa aagtggtttt aagatccttt
     2161 tcaaggagta aatcttgagt ataagtttca aatttagctg catctttaaa aaaatgctta
     2221 aattttaaat aacgcaaaaa tccataaaat gctatgtgta aaacggctaa aatcatataa
     2281 ataaataaag gaataacaag ccatatcata ataggtagtt caaaggtata agtgctgata
     2341 tttagagtat agcttcctaa ttctagatgc caagcaaagg caaaaataag tgctatataa
     2401 ataaaacttg caagtaagaa gagtttaatt ttcatgtttt tttccttgtt ctgcaatttg
     2461 acggcaagtg atacaatatc ttgcgtgagg tttgactttt agtctttgag agtcgatttc
     2521 atcatcgcaa gattcgcaaa ttccataagt gccgtttttg attttatcta aagaattttc
     2581 gatttctata agttcttctt tgagattggt gctgatagta aagtcaattt gagagcctgt
     2641 ttctatgaca gaaaaatcta cactatcgct tgggacgcta ttgtgaagag cttcgatttc
     2701 atttgaattg ctttgcaaat tttctaagat ggtttttttt ctttcttcta aaatattttt
     2761 gaaattttgt atttcatttt ttttcatttt aaaactttct atttgtgata agggtgattg
     2821 ttgttgatgc aaaatgcgcg ataaatttgt tctaaaagta aggttttaac aaattgatgt
     2881 gctaaagtaa gtttgcttaa tgatagtcta aaatccaaac tttgattaaa ttcttctctt
     2941 aaaccataag caccgcctat aaaaaaactt aattcatttt tatcttggat gagttttgca
     3001 aattctatac ttgtaagatc tttccctttt tcatcaagag cgatacaata gcctttttta
     3061 taaggcataa aagcttcttc atagcttttt tttgcttcta tggcatttaa attttgagct
     3121 aaggctattt ttttattaaa aacatttatt tcttttaaag tggcgtattt agaaataagt
     3181 ttagagtatt tctcgctcca agttttaaat tcatcacttt tttgaataca aaagatatta
     3241 acttgcaaat tattttccac taaaaaattt tagtacatcg ctaagatatt gtttttgttc
     3301 tcctctttca actatggcat ctataagtcc atgttctaac aagaactctg ctttttgaaa
     3361 gccttcaggt aaatctgctc ctatggtttg tttgataact cttgcaccag caaaacctac
     3421 taaagcttca ggttcagcga tgattaaatc tccaagccaa gcaaaagaag cacttacccc
     3481 acccatagta ggatcagtta aaatgctaat ataaggaagt ttttctttgc taagaagttt
     3541 aagtgcagcg ctagttttgc tcatttgcat taaagaataa gtactttctt gcattctagc
     3601 tccaccgctt gcacttacga tgacaagagg ggttttgctt gtgatggctc tttgtatagc
     3661 tctaacgatt ttttctcctt caacagaacc taaagatccg cccataaaag aaaaatcaaa
     3721 tacaacaagt tgggttttta aaccattgat ttcacattct ccgctgataa cagaactttt
     3781 tctacctgtt ttactttcac cttcgctaag gcgtttttta taggatttgc tatcaacaaa
     3841 ttttaaagga tctatagctt ctaaatttgc atcatactca ataaaactgc cttcatcgct
     3901 taaaagttta atacgttcat cagctgaaat tctcatgtga taattacatt taggacaaac
     3961 attaaaacaa gattctattt ctttataata catcaaagca tgacaacttt ggcattttac
     4021 ccagtgattt ggagcttctt taatactagg ttgttgtctt cttatttttg aaaaaatatc
     4081 tgcaaaattc atatattcac ctaattattt tttaaaaatt ccaagattat atcaaaaatt
     4141 ttcttgtctt ggcttaggag aaggaaattt tcattttttt ctatatataa gttttgatga
     4201 attgttaaag cagctgctgt atcaaaaatt cgtgtttttc caagaattaa tacaaaacta
     4261 aaatacgaag cataagcgag acttaaggct gttgcaccca aagagcgaaa ttttaattga
     4321 ttttttgtta aaaaatcgag aagttctgga taaagtgaaa ttttttcaac tatacctatt
     4381 ttaggaaata gattgggtgt taagggtgag tattttggat cggaaagatt ggatttaaaa
     4441 gcttgattgt tattaaaagc aaaaatttct tgactgacaa gattgcaaac aaaagcgctt
     4501 tttgcctgat ctttttccat aagagctata gaagttccat aaaatggtat tttagaaaca
     4561 aaatttgaac ttccatccaa aggaacaaga atcatttgtt ttggcctagc ttttccgatc
     4621 aatccgcttt cttcagaaaa aatttgtcca aaacaactaa gatattttat gaaaatttgt
     4681 tcacatttta agtcaagctc atagccttga ttttcatcat agcctaattt agagcaaagt
     4741 ttaagatcat tttgtgggat attatttaga tacttgcgta tttgcaaatt tgcatttaag
     4801 caagcatcta aaaattcttt cattaaaagc gtgttccaag attaaattca aaactattag
     4861 tattatcacc ttttttatca ttaagaggtt tggcaaatac aagctgtaaa ggtccaattg
     4921 gtgtaatcca ttcaatgcct atacctgtac tcattctttt tatttcatct aaatttttac
     4981 gtcctatcat accataatca aaaaacacgc taccacgaag tttgattcta tcaatcaaag
     5041 gaaaactaag ttctacagaa ttggcaaaag ctatggttcc acctacttca tctccccatt
     5101 gatttttagg acttaccgtt ctgctttcaa aaccgcgtat cgatctaata ccacctaaat
     5161 aaattctttg gttaattggt aaataacctt cattccatac tttataaaaa ctcgctttat
     5221 agcgataaat aagatcatat cctatatagt cttgcaaacc ttgataaaag ttaaatttag
     5281 agcttgatga aataaattct tgatctccgc caagtccagc gtattctaaa ctagttgaag
     5341 caatgatacc tgatcgtggc agataataat catctgtatt gttaaaggtg attgctggag
     5401 ttatagagct tttaatactt ttgccaagtt catatcctgt tcttaaaaga gttggactta
     5461 agtgatatat atcgctttgt tcaagattat aagttaagct tacattatag tatcttgcaa
     5521 attggcgtcc aactgttata tcaaagccgt aatttttttc tgaataatta tcccattcat
     5581 agtcatttga ataaagtgtt ccgcctagac tatattgact atcaagaacg cgtggattta
     5641 tgagactaat ccttcctgat aaggtatcat cgcttttatc cacgcttaca gagcttttta
     5701 ttcctgaacc aaagatattt gtatctgata aagaagcatt aagtaaaata ccatcgcttg
     5761 atccatagcc aatgcctcca gaaatagctc ctgtagaagc ttctttaaca tcaacaatca
     5821 aatcaatatg tgtatcatca actttttctt ctttgatatt tacatcgtca aaataagaag
     5881 ttctttttaa agcatttttt gactcgctta agtctgttct attgtataaa ttaccttctg
     5941 ttatatataa ttctcggcgt atgacgcgat ctacagtgcg tgaatttcct gaaataataa
     6001 catttcttat ataaacttta tcgtgaggga ttactttaaa tacaacggtg gcttcttgag
     6061 tttgatcatt tttttgaata tcaggataga cttctacaaa cgcataaccc aaatcagcac
     6121 tttgtgtttc tatggtttta acatcttttc taatgtcttc gatattgata gttttgccag
     6181 tgcttgatct taaatctttt acggtttgtg tattttgttt atcatcaaat aaaggatttt
     6241 ctatgcttat acttttaatt ttataaggct ttccttcttt gataaaataa gtcaaatttg
     6301 cttgataagt atctgtgtag gttttaagat aaggggagga tacttgaaca tctaaatatc
     6361 cttttttcat atattcatca gcaattcttg aactatcgtt actaagttca aaaactttta
     6421 attttccatc attgcgtccc cacatccatc ccataaattc tttttctttg ttaacaacag
     6481 caggttctat atcagaatat gaaaatttct tggctccact taaatgaaca ttatcaataa
     6541 tgatattttc gccacgattt actataaatt caagctctag tccatcagta ttttctaaag
     6601 tctttttttt gtattctata atagtatcaa aataactttt tgcttcataa taagctttaa
     6661 tgcgttcaat agcttctttt atacttcctt catcaagtag tgtgcctctt ttaatcccta
     6721 aaatactttc aacttgtttt ctatcatttg aagctatacc tgtgatagta atctttgcta
     6781 tagttggttt ttcggtaact ataatttcca aaattccatt gttgttttct accgcgatat
     6841 tttcgaaata attttgttta taaagattaa gaatagcagt gttgattttt gcaggattta
     6901 tttcctcgcc tattttaagc cctgtaatat tcatggcact tgtatttgat aagtggttta
     6961 atccgataaa tttaatatct ttaatggttg ctgcattggc tatagcaact aaagcacaaa
     7021 tactaataag atgttttttc attgattttt ttacctaaag ctttattaaa agctgtataa
     7081 tagcaaaaaa aatttaacaa aaaaactaag gtagaaagta tgaaaatagc aattataggg
     7141 cttgggctta tgggtggatc tttagggctt tgtttgaaag aaaataagct tatttcttgt
     7201 gtttatggta tggatttaag caaagaaaat gaaaaagatg ccctgcgatt aggtcttatt
     7261 catgagctta tagaatttaa agatttagct ttatgtgata tgatttttat cgcaactcct
     7321 gttaatgcta ttatagaaat tttgcaaaag ttagttgatt tgccttctaa tgtaacaatt
     7381 atagagcttg gaagtacaaa aagaaaaatt atagaaagtt tgcctaagaa tttaatcaaa
     7441 caaactcttt ttgctcatcc tatgacagga actgaaaatt caggtccaaa agcggctttt
     7501 aaagagcttt ataaagatgc agtttgtgtt ctttgtgata gtgaaatagc tgatgacttg
     7561 catcaaaaaa gagcggtaga aattttttct catttaggga tgaaaattgt ttttatggat
     7621 agtaaagccc atgatcatca tgctgctatt atttctcatt tgcctcatgt tataagtttt
     7681 tctttggcaa attttgtaat gaaggaagaa gataaaagaa atattgttca tttagctgga
     7741 ggatctttta aaggtatgag cagaattgcc aaatcatcgc cacaaatgtg ggaaagtatt
     7801 tttttacaaa ataaagataa cgtattaagt tctattgatt tttttcaaca agaattagag
     7861 agatgtaaac aaatgataca attagacaaa aatgatgaat taagagaatg gatgaaacag
     7921 gctaatactc taagagaaat tttataaatt tgctagatat ttactgaaaa tataatagaa
     7981 tttatactaa aaacaacaaa aacattaaaa atttttaagg aaggttatgg caaaaagaaa
     8041 aggcaaaact tatttatctg ttttaatttt agttttaata gcaattttga ttttttttat
     8101 ttcaagatta agtatttttg aaaaaaatcc tcctcaaatt ttaatgccag atgttgtata
     8161 tactgatctt aaaaaaccta ttttagtgca tgttaaagat gatgaaagtt ctatcaaaaa
     8221 tgtacaaatt atattgcata aagacgacaa tactagtaca atggttatag cagatgaaaa
     8281 gatttctaat ttaaaagata ttaccttaca agttgctttg ccaaaatttg gttacaaaga
     8341 aaatgtaaaa tcttttgttt tggaggtgat agctaaagat tctagttttt ggaatttttt
     8401 tagtggtaat gaagcaagaa aacaaattgc ggtattggta gataatacgg ctccaaaaat
     8461 caatatcata agcaattctt accaaatcga gcaaggcggt gccggggcag ttgtttttaa
     8521 ggccgatgat gctaatttag ataaggtgta tatagaaaca aataaaggta aaatctttaa
     8581 agtcacacct tatgtaaaag aaggatatta tgcggctttg attgcttggg atgcaagaga
     8641 tgaggaattt cgtgcatttg ttatcgctac ggataaagcg ggaaatattt caaaagaatg
     8701 tataaggtat tattttgtta atcgtaaata tcgtgtttca aatatcaatc taacggataa
     8761 atttttagat ggaaagattg agaatttagc aaatcaatat gctccaaaag ataataatct
     8821 caatcgttat gaaaaattta agtttgtcaa tgaaacttta agaaatagca atgaagaact
     8881 tatccatgaa atcacttcaa aagtacctga ggaaaaaatt gataattttg atttgaattt
     8941 atttttacct cttaaaaatg gtatgaaagt agcggatttt gctgatcata ggtattattc
     9001 ttataatggg caatttgtga gtgattctta tcatatgggg cttgatctag caagcgtagc
     9061 acaagctcct atcataagca ataacgcagg caaggttgtt tttgctgctg aaaatggaat
     9121 ttatggttta aatttaatta tttatcatgg ttttggagta tatagtcttt atgggcactg
     9181 ttcttctaaa aatgttgatt tagatgaaat gattaataaa caaagcatta taggcaaaac
     9241 aggaacaagt ggtttagcct taggtgatca tttgcatttt ggagttttgg ttcaaggagt
     9301 tgaaacgcgt cctgaacaat ggcaagataa aaaatggata gaaaataata tttacaatgt
     9361 tttaaatgat ggtaaaaaga taattttagg aaaaaattaa tgaaacaatt aactttagca
     9421 aaaactgtca aaggcgtagg tataggactt cataagggtg agcccataga aattacttta
     9481 gagcctttag aagcaaatag tggtatagta ttttttagaa gcgatcttaa tgcaagctat
     9541 aaggcaagtc ctgaaaatgt gatcaatact caaatggcaa ctgttttagg agatgatcgt
     9601 ggatttattt ctacaataga gcatttaatg agtgcgatta atgcttatgg aatcgataat
     9661 gtacgcatag ttttaaatgc aaatgaagct cctgttatgg atggatcaag tattagtttt
     9721 tgtatgatgc ttgatgaagc aggggtaaaa gaacttgatg tgcctaaaaa aattatggta
     9781 attaaaaagc ctatagaagt aagagatggt aataaatttg tgcgtttaac tcctactaaa
     9841 gaaccccgta ttaattacac aattaaattt gacaatgctg ttataggtga acaaagttac
     9901 aattttgaat tcagcaaaaa aaattatata gaaaacatag caagggctag aacttttggt
     9961 tttttaaaag atgttcaagc tcttaggagt atgaatttag cactaggtgg aagtttagaa
    10021 aatactatag tggtagatga aaatcgtatt ttaaatcctg agggtttgcg tttcaaagat
    10081 gagtttgtaa gacataaaat tttagatgca attggagatt taaccttact tggatatcgt
    10141 gtttttggag attatacttc atatgctggg agtcatcatt taaatcattt gctcactaaa
    10201 gaagttttaa aagataaaga tgcttatgaa attgtaagcc ttgaaaaaac aacccaaaaa
    10261 gcttatgaaa aggtatttgc ataaaaacct ctcttttgct taatgcttta tctaagcctt
    10321 taatgatcgg aatttatcaa gatgataaac ttataaaaac ttataaaagt gaagaaaaag
    10381 caagcgaatt tttaccaaaa attttagatg aattgcttaa agaatatgat tttacaagtt
    10441 taatctatgc taatggtcca ggttcttata tggggattaa aatttcttat gtaagtttga
    10501 gtactttaag tatagtaaaa aatattcctt tatttgcggt gagtgctttt gaattaaatg
    10561 gctataaacc cataagtgca aataaaaatt tttgttttgt atataaagaa ggtgaaattt
    10621 gtttagagca aaatatccca gcagagtttt ttttaccaaa aaatttacaa gagcttaaac
    10681 taaataatga taatcttccc ttttattttt tagatgcaat ttaggatgaa atttgaaaat
    10741 tttagttccc gctacgagtg cgaatttagg gccaggtttt gattgtttag gacttagttt
    10801 aaagcttttt aatgaaactc aaatccaaaa atcaggtgtt tttagcatta gtattggagg
    10861 tgagggcagt gataatattt ttcttaaaaa aaacaatata tttgtaaata ttttttatga
    10921 aatttatgaa aaactaagcg gaaaaaaaga taattttcgt tttatttttc aaaataacat
    10981 tcctctttca agagggttag gaagctcttc agctgtgatt gttggagcta ttgccagtgc
    11041 ttattatatg agtggattta aggtagaaaa agaacgtatt ttagatgagg ctttaattta
    11101 tgaaaaccat ccagataata tcgctccagc tactcttggt ggttttgtgt gttctttggt
    11161 tgaaaaaaat aaagtttata gtatcaaaaa agagattgat aaagatttag ctgctgtggt
    11221 tgtgatccca aatttggcaa tgagcacgga acaatcacgc caagctttgg ccaaaaattt
    11281 aagttttaat gatgcggttt tcaacctttc tcatgcttca tttttaaccg cttgtttttt
    11341 ggagaaaaaa tatgaatttt taaaatttgc aagtcaagat aagcttcatg aaatcaatcg
    11401 tatgaaaaac ttacctgagc tttttgaagt gcaaaaattt gccttagaaa ataaagcttt
    11461 aatgagcaca ctttcaggct caggatcgag ctttttttct ttagctttta aagatgatgc
    11521 tttagcttta gcaaagaaaa tgcaaacaaa atttaaagat tttcgtgtgc aatatttaga
    11581 atttgatgat aatggctttg aaatttgcta aaaaatataa aaaaaagata taattttgaa
    11641 aaaacatata ccaattagaa tgtgcatagt gtgtaaaaac cgctttgagc aaaatatgtt
    11701 atttagattt aaagttgttt taggagatat tgcacctaaa gcagaacatg gaagaagcgg
    11761 atatttatgt caaaattgta ttgagaaaga agataaaatc ttacaaaaag cattttctaa
    11821 aatatgtaaa aatttaaata ctaaaattac tcagcaagga cttaaggaga tatttttaaa
    11881 tggcaaagat tagaattcat gaaatcgcaa aagaattagg ttatgatagt aaggaaatta
    11941 ttgaaaaggc aaatgaatta ggacttggaa ttaaaacagc atcaaatgct gtagaacccg
    12001 agattgcggc agctatttat gagtatatac aaacaagaga aattccagaa gcttttaaga
    12061 aaaatatcaa aactcctacg gcaaaaaagc ctaaaaaaga aaatataaaa gaacaagaaa
    12121 agctaaatga atctgaaaaa aaagaaccta aaaaagaaga aaagcttaaa caagaagtta
    12181 aaaaagaaga attaaaagtt gaaaaagaaa atgcaaaaga ggaagaaaaa caagaaatta
    12241 ttgatgctca taagccacaa agccttgcta gtgcaacttt agccaaaaga cgcggacttg
    12301 tcattgttaa aaagaaaaaa gacgaagaag aaattcaagt taaaaaagaa gaagtaaaaa
    12361 attcaaatga tatatctatc aataatgaag agcgcttaag tttaaaaact atgttttcaa
    12421 atgctgatga gagtttaaag aaaaagaaaa aagaaaaaaa atctattgct gcgagtaaaa
    12481 aagaaagtac cgaaaaaatg aattttttag atgaacatga ttttggtgat atttctttag
    12541 atgatgaaga tgaggtagtg ttacctgatt ttagtgtaaa agaacaagaa aaaccacaaa
    12601 atatcaataa aaaacaacct aattttataa gacaagctgt tggaaattct gcgggttttg
    12661 gacttgaagg tggaattcaa agaagaagtc gtaaaaaacc acctaaaaag attgaaaaaa
    12721 aggaagtaga agaagtaagt agcgttgcta tttctaaaga aattcgtgtg tatgaattcg
    12781 ctgataagat aggaaaaagc actagtgaag tgatttcaaa acttttcatg cttggaatga
    12841 tgacaacaaa aaatgatttc ttagatgaag atgcgattga aattttggct gctgaatttg
    12901 gtatagagat caatatcatt aacgaggctg atgagtttga ttatgtaaaa gactatgaag
    12961 aagagattga tgaaaaagat ttagtgacta gagcacctgt gattactatc atggggcatg
    13021 ttgatcatgg taaaacttct ttgttagatt atatcagaaa atcacgcgtt gcaagtggag
    13081 aagcaggggg tattacccaa cacgtgggtg cttatatggt agaaaaaaac gggcgtaaaa
    13141 ttacttttat tgatactcca ggtcacgaag cttttactgc tatgcgtgca aggggtgcaa
    13201 gtatcactga tattgtaatc atcgttgtag ctgcagatga tggagtaaaa ccacaaacta
    13261 aagaagcgat aaatcatgct aaggcagcag gtgtgcctat tattatcgct attaacaaaa
    13321 tggataaaga agcggcaaat cctgatatgg taaaaactca actcgcagaa atggaaatca
    13381 tgccagtaga atggggcgga tcttatgaat ttgtaggagt ttcggctaaa acaggaatgg
    13441 ggattgaaga tttacttgaa attgtgcttt tacaagctga tattttagaa cttaaagcca
    13501 atccaaaaag ttttgctaaa gcaagcatta tagaaagttc tgtgcaaaaa gggcgtggtg
    13561 cggtagctac tatcatcgtg caaaatggaa cacttactgt aggaagtact gtggttgcag
    13621 gcgaggctta tggaaaagtg cgtgcgatga gcgatgatca aggtaaagct ttaaaagaaa
    13681 tcaaaccagg tgaatgtggg gttatcgtag gacttagtga agtagcagat gcaggtgaaa
    13741 ttttaatcgc agtaaaaacc gataaagaag caagagaata cgctaataaa cgccacgaat
    13801 acaatcgcca aaaagaactt agcaaatcca ctaaagttag cattgatgag cttggagcta
    13861 agatcaaaga aggcaatcta aaagccttgc ctgttatttt aaaagctgat gtgcaaggat
    13921 ctttagaagc cttaaaagca agtttagaaa aacttagaaa tgatgagatt aaagtgaata
    13981 tcattcatag cggggtagga gggatcacac aaagtgatat agagcttgca agtgcgagtg
    14041 aaaactctat agtactaggt tttaacatac gcccaacagg ggaagttaaa gagcgtgcta
    14101 aggataaagg cgtagaaatt aaaacttata atgtaattta taatctttta gacgatgtaa
    14161 aagccttact tggtggtatg atgagcccga ttatttctga agagcaatta ggacaagcag
    14221 agattagaca agtgatcaat gtgccaaaaa tcggacaaat cgcaggttgt atggtaactg
    14281 aaggggtgat taaccgtgga gctaaaattc gccttatccg tgatggagtt gtggtttatg
    14341 aaggaaatgt aagctcgctt aaacgtttta aagatgatgc taaagaagtg gcaaaaggct
    14401 atgagtgtgg cgtaggtata gaagggtgtg atgatatgag agtgggtgat tatatagaaa
    14461 gctataaaga agtagaggaa caagcaagtc tatgaaccca agtgagatta aaaaactacg
    14521 cactgaaagt atcttaaaag agctgatccc tgaagcttta gcaaatttag atgatgaaaa
    14581 tttgaaaaat ttgtgtgtag tggatgtaga gtgtaaaaaa ggcagatacg atgcttttgt
    14641 gtatcttgat aaaatgtttt ttaatgttca tgagcaagaa aaaattttat cttctttaaa
    14701 aaaggcaagt agagctttgc aaaattattg catgagcgag cagggctggt ataggtgtcc
    14761 gaattttcat tttaaatttg atgataggct tgagtatcaa aaccatatgg acgcactttt
    14821 tgaaaaaata aaaaaggata aaaatgaatc ttgaagccct ttgcaaagaa gcagaactta
    14881 gcttttatga tgatgagcta gtaagtgaaa atggtaaaaa aatttataga atttatgtgc
    14941 aaaaagaagg cggggtaaat cttgatgatt gtgcaaagct tagtgaaatt ttatcgccta
    15001 tttttgatgt agaaccacct gtaaatggag agtatttttt agaagtatct tcaccaggac
    15061 ttgaaagaaa acttagcaag atagaacatt ttgcaaaaag tataggtgaa cttgtgaaga
    15121 tcacaaccaa tgaaaaagaa aaattcgaag caaaaatcat tgctgtagat gatgaaaata
    15181 tcactttaga aaatttagaa aataaagaaa aaactactat aaattttaat gatataaaaa
    15241 aagctagaac ctttgtggag tggtaagaaa tctaaatatg atttaaaaat agcataattt
    15301 aaggatttgg taatgtggaa tttagatgaa aaaaaattac aagaaatgct tgatggcttt
    15361 ttaaattttc aagaagtatg gactttagaa aaagttaaaa atatgactct tgaagaatat
    15421 actaacatta aaaaagataa tccaaataga gatgatttta ctttttggat agaaagtaaa
    15481 ttggataatc taggaagtat ttggggtggc tcagctttta aatttggtat atatagaaga
    15541 aatgatgaaa gtcagaaaga atcttctagc ggtagattat atagtcaaaa ttatgcttgg
    15601 attgctaaat atggcaataa tgaaaatgaa gcatttaata atatcaaaga aaaaatcata
    15661 caaataatac aagcaagtca agataataat ttaaaaacta tagaaaaaat agattttggg
    15721 gatgcaatta aatggaaaat agcttttcat tatcaagatg taaagaatat aaaaatagtt
    15781 aatatttttt ctaaaaatgt tttag
//
LOCUS       DAPIWV010000034        15440 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.035, whole genome shotgun sequence.
ACCESSION   DAPIWV010000034 DAPIWV010000000
VERSION     DAPIWV010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15440
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.035"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            26..427
                     /locus_tag="RJ272_000757"
     CDS             26..427
                     /locus_tag="RJ272_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDV7381867.1"
                     /translation="MIYNEKIISMNNDLLDHQHKELFEISKKLSLINQCHVGTKELKI
                     VLRELLIMINRHFSDEEAFMRKIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
     gene            605..1786
                     /locus_tag="RJ272_000758"
     CDS             605..1786
                     /locus_tag="RJ272_000758"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HDV7381868.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDYILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1796..2767
                     /locus_tag="RJ272_000759"
     CDS             1796..2767
                     /locus_tag="RJ272_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HDV7381869.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2790..4673)
                     /locus_tag="RJ272_000760"
     CDS             complement(2790..4673)
                     /locus_tag="RJ272_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDV7381870.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(4670..5305)
                     /locus_tag="RJ272_000761"
     CDS             complement(4670..5305)
                     /locus_tag="RJ272_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HDV7381871.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            5466..6161
                     /locus_tag="RJ272_000762"
     CDS             5466..6161
                     /locus_tag="RJ272_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HDV7381872.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVIGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            6265..6636
                     /gene="secG"
                     /locus_tag="RJ272_000763"
     CDS             6265..6636
                     /gene="secG"
                     /locus_tag="RJ272_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDV7381873.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAAQLPSDVNSSK"
     gene            6646..7209
                     /gene="frr"
                     /locus_tag="RJ272_000764"
     CDS             6646..7209
                     /gene="frr"
                     /locus_tag="RJ272_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDV7381874.1"
                     /translation="MIMLSEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDAYTIKIDESVKSKESELLKV"
     gene            7212..7820
                     /gene="pyrE"
                     /locus_tag="RJ272_000765"
     CDS             7212..7820
                     /gene="pyrE"
                     /locus_tag="RJ272_000765"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDV7381875.1"
                     /translation="MNLGQIYKDCGAYLEDHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            7821..8231
                     /locus_tag="RJ272_000766"
     CDS             7821..8231
                     /locus_tag="RJ272_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7381876.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKESFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            8245..9267
                     /locus_tag="RJ272_000767"
     CDS             8245..9267
                     /locus_tag="RJ272_000767"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDV7381877.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            9254..10627
                     /locus_tag="RJ272_000768"
     CDS             9254..10627
                     /locus_tag="RJ272_000768"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDV7381878.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(10596..11144)
                     /locus_tag="RJ272_000769"
     CDS             complement(10596..11144)
                     /locus_tag="RJ272_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HDV7381879.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESGIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEI
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            11233..11862
                     /locus_tag="RJ272_000770"
     CDS             11233..11862
                     /locus_tag="RJ272_000770"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HDV7381880.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            complement(11881..13068)
                     /locus_tag="RJ272_000771"
     CDS             complement(11881..13068)
                     /locus_tag="RJ272_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDV7381881.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKSGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNTVFEIFKEEKILENVNKLTPYLEQSLDELIKEFDFCKKRKGLGF
                     MQGLSLDKSVKVFKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(13072..13917)
                     /gene="argB"
                     /locus_tag="RJ272_000772"
     CDS             complement(13072..13917)
                     /gene="argB"
                     /locus_tag="RJ272_000772"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDV7381882.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKVTIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDVACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            complement(13921..14367)
                     /locus_tag="RJ272_000773"
     CDS             complement(13921..14367)
                     /locus_tag="RJ272_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7381883.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVVDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            complement(14377..15405)
                     /locus_tag="RJ272_000774"
     CDS             complement(14377..15405)
                     /locus_tag="RJ272_000774"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDV7381884.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKITLQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
BASE COUNT         5410 a         2511 c         2325 g         5194 t
ORIGIN      
        1 tataaatata aaagtactca aaaccatgat ttataatgaa aaaattattt caatgaataa
       61 tgatctttta gatcatcaac ataaagaact ttttgaaatt tctaaaaaac tctctttaat
      121 aaaccaatgt catgttggaa caaaagaatt aaaaattgtc ttaagagagt tgttgataat
      181 gatcaataga catttttcag atgaagaagc ctttatgaga aaaatagaat atccttatat
      241 caaccatcat acaagaattc atagaaaaat tatcttagaa attgaagaaa ttatcatcag
      301 tgaagctaaa tttgtaaata taatgaccga aaaattaaat ctcgttgttc aagattttat
      361 ctttaaacat acagccaaag aagattcaaa gatagtaaag tattacgaag aaaaatttaa
      421 gaaatagtat ttctcatttt tgctatataa aattcacaaa atatttcact ttaaaatttt
      481 actttagcat tttatttttg ttataatttt taacctaatt tttataaatt tttgttatta
      541 tccgttttca aataaagata aaaaatatcc taattaaaat taaggataaa ttaaggattt
      601 taaagtgaaa gtatatttag ataacaacgc aacgacaatg cttgatccta atgcttatga
      661 gttgatgcta ccttttttaa aggatatgta tggaaatcca aatagccttc atcaatatgg
      721 tagcgcaaca catcctgcct taagagaagc tttggataaa ctttatgcag gacttggagc
      781 aaatgaccta gatgacataa ttgtaacctc ctgtgcgaca gaaagcatta actgggtgct
      841 taagggtgtg tattttgatt atattttaga taaagaacgc aatgaagtga ttatttctag
      901 tgtagaacac cctgctgtta ctgctgctgc ttatttttta aaaagtcttg gagtaaaagt
      961 catagaactt cctgtaaatg aagaaggagt ttctactgta gaagatttgc gtaaagtgat
     1021 tagcgataaa acagcacttg taagtgttat gtgggcaaat aatgaaacag gtatgatttt
     1081 tgatattaaa gcgatggcag aacttgcgca tgaatttggt gctctttttc atacagatgc
     1141 tactcaagca gtaggtaaaa taaaggttaa tttaactcaa gtaggagttg attttgcttc
     1201 attttcggca cataaatttc atggaccaaa gggtgtgggt ggacttttta taaaaaaagg
     1261 acttaagctt actccacttt tacacggtgg agaacacatg ggtggtcgta gaagcgggac
     1321 tttaaatgta ccttatatag tggctatggg cgaggctttg cgtattgcaa atactatgct
     1381 tgattttgaa gattctcata tacgccgttt aagagataaa ctagaagatc aaattttagc
     1441 cttgcctgat acaacagtgg ttggaaaaag agaacaccgt gtgcctaata caatcttagc
     1501 aagtattaaa ggagttgaag gcgaagcaat gctttgggat ttaaataaaa atggtatagc
     1561 tgcaagtacg ggctcagcct gtgcaagtga agctttagaa agcaatccta ttatggaagc
     1621 tatcggtgcg gagcatgatt tagcgcatac agctttaagg ctttctttgt cacgttttaa
     1681 cactgaagaa gaaattgatt atgcagcaaa acaaattaaa aatgcaacac agagattaag
     1741 agcaatttct tgtacttatg cttataatcc aaataattac aaataaggat gaaaaatggg
     1801 aaaaaatagt ttaattggtg gatccatttg ggatgagtat tcacaaaaag ttcaagatag
     1861 aatgaataat cctcaacata tgggagaatt tagtgaagaa gatgctaaag cacgcaatgc
     1921 aaaattgatc gtagctgatt ttggcgcaga aagttgcggc gatgcggtaa gacttttttg
     1981 gcttgtagat gaaaaaactg ataaaattat cgatgcaaaa tttaaaagtt ttggttgtgg
     2041 tacagctata gcaagtagtg atactatggt ggatctttgt ataggaaaaa ctgtagatga
     2101 agcagtaaaa atcacaaatt tagatgtgga atttgctatg cgtgataatc cagaaactcc
     2161 agctgttcca cctcaaaaaa tgcactgttc ggttatggct tatgatgtaa tcaaacaagc
     2221 agcagcgcat tataaaggca taagtcctga agattttgaa gatcaaatta tagtttgcga
     2281 gtgcgctagg gtaagtcttg gaactattaa agaagtgatt aaacttaatg atttgcatag
     2341 cgtagaagaa atcacacaat acactaaagc gggtgctttt tgtaaatcct gtatcaaacc
     2401 aggcggacat gaaaaaagag attattacct tgtagatatt ttagctgaaa ctagagctga
     2461 aatagataga gaaaaactca aaaatacaat gaaaagtgat gtagcttttg atgaaatgac
     2521 cgtagtggga caattaaaag cagttgaaag tgttttagat gctgaaattc gccctatgct
     2581 tcataatgat ggtggagatt tggaagtgat tgatatacaa aaggctgaag gtgcagcaat
     2641 tgatgtttat attcgttatc ttggtgcttg tagtggttgt tctagtggaa gtggtgcaac
     2701 actttatgct attgaaacaa ttttacaaga agaattaagt ccaaatatac gcgttatgcc
     2761 ggtttaaaaa atagcaagat aaaatcttgc tattttatag cttttgcttg caaatcaagg
     2821 ggtggtaaat tttctatata aatactacga cttgggaaag caaaggttaa accatttttt
     2881 tcaattatac gcataaactc aagcattaaa ctttgtctag cttctctaaa atcttttcca
     2941 cctatttctt tgatataaaa ataaagctct atattaatac tactatctgc aaattcactt
     3001 aaagccacat aacaagcatt tttatagcct tctaaatcat taatagatac aagattttga
     3061 cgatattttg ttgtatgatc gccatatttt aatgcgctat cctcatcgtg agctactaaa
     3121 tcacttgtat gcaaaaattc tcttagatct tttacacatt gttctagttt ttcaggagta
     3181 gcatcataac caacacccaa atacattcta acatggcgac ccatgcgtct tttgctccaa
     3241 tttttgatat tagctcccat aatagttgaa tttggtaaaa atacaagaca attatcaaaa
     3301 gttctaatag tagtttttct aagtcctgtt tcaaccacgg ttccttctat gcctgaaacc
     3361 tctacccaat ctccttgatt aaagctatta tcaaaaagta agagtataga agcaaagaaa
     3421 tttgcaatga tatctttcgc cgctaaagca acagctaaac caccaattcc caaagatgca
     3481 ataatagccg aaatattaaa accaagttga gcaagaatat ataataaggc tataataata
     3541 atgacaaaat ataaaatttt aataattaaa tttacaactt ctttttttcc acttttttga
     3601 gcaagtttag aaaccaatac cacgccataa ccatcaagca ttcttaaaat aagccatgca
     3661 attaaaactg cataaactat atgaaaaaaa ttacttaaat ttacactcaa aggtgcagga
     3721 taagttgcta tagtaagaca aagagaaata gcatagacaa tcaacaagaa gcctacgggt
     3781 tttttaatat tctcaataaa aatgacttta atatcatcta catcattttt atttctataa
     3841 aaaaactgaa caaggaaaaa atatactata tttgcaaaaa aacgtcttaa agatataaaa
     3901 aatactaaaa ccagagcaga aattactatt tttccgatat taacaaaact taccccaatt
     3961 gcctcattta tacgatctat ccaaacttga agctcgagta atgaaaaaat ataattactt
     4021 tcaagcaaat ctgcatttga gcgtaaatac ttaagaattt cagaataaga atctacagca
     4081 ttactgatat atctttcttt tagggtaatt ttttctaatt cttctgaatt tgtaattttg
     4141 cttttaaaac tatctaaatt aacattagaa gaattttgta aattttccat tgccttatca
     4201 acagtagcaa tcaaatcttc actgcttgct gtatttttaa aaagtttttc cacttcaaac
     4261 aaagaagaat aaaaactttc cacaatatta aaataaacta gattaagagt ggcatctgta
     4321 taaatataag gcttattaat attctttttt tgaacatcta gtaatttttc ttttgctttt
     4381 aaaaatctag ccactgcctc ttcattaatc ttttgtccta ctatcatatc gggtattttt
     4441 gctaaaatag tctttttgtc tttttcaaat tcacttaaaa taccattaaa agtgcttgaa
     4501 ttttcatcat tgtttttctt aaattcttta atttgattgt taagatcaac atatttttca
     4561 actaaagcat aaattccttc atcctcttta ctaatattcg catcaataaa tttaaattct
     4621 tgtgctccaa ggtataaaat aaaaaaacat aaactaaaaa taattttctt cattgaactt
     4681 tcctatcctg tattaaagta aaaatttttg ctttaaaatc atactcataa atttcacctg
     4741 tctctataat ataataccaa gcatgtactt ctatttttcc ttcatctaaa gcttcttgca
     4801 cgcctggata agtaagtata ttttgcaaag aatttactaa atttaatttt tctgtaagcc
     4861 atgaacgcat agccaaatcg tctcttgcaa aaatcattac atcttttttt atcggatcta
     4921 acatagtaag ccattttttc acattaggaa ttttatttaa ctcttcatca gaataataaa
     4981 gagcattgca acctccacaa ttactatggc cacaaacgac gatattttta atatgcaatg
     5041 aatttaaagc atactctatt gctgaagttg tcgctaagta atcttcccca atgcgataag
     5101 gtggaactat atttgcaata tttcgtatta caaaaagctc acctggaccc gtattggtga
     5161 tcaaatttgg aattactcta gaatcagaac aacctataaa aagagtatgg ggattttgct
     5221 tattttttag actttcaaaa agttcttcat gctccttaaa gtcttcttgc ataaacttaa
     5281 tcgcaccact aataagattt tccataaaac caacctgaaa ctaaaatctt aaaattataa
     5341 caaaatttca gcaaagattt catttaatca taaagatatt atataaatta actttttatt
     5401 tagtctaata tgttagattt cgctcaagat tttaaaaaat ctaacaattt tgcaaggaga
     5461 attttatgag tctttatgat agagactact caagatcaaa agaatttgaa aatacacgct
     5521 caagcgaatt aagtattttt attaaacaaa cttatcaact ttttgctgct tcattattag
     5581 ctgcaacagt aggtgcgtat gtaggaattt ttgctttagc atcatttttt atacaatcac
     5641 aagtaacttt ttggatcctt tttgctgttg aaatcggact tttatttgct ttgcaatgga
     5701 aaaaaagaga agctccatta aatcttgttt tactttttgg ttttactttc tgctcaggtt
     5761 taacacttac acctttgctt atttcagttt tagctctacc agctggagga attatcatcg
     5821 ctcaagcttt tgctttaaca acagttgctt ttgcaggact tagcgtattt gctatgaata
     5881 caaaaaaaga ttttactgtt ataggcaaag ctttatttat agtattaatc gttattgtag
     5941 cagcatcttt actaaacctt ttcttccaaa gcagtatagt taatctagct atttcagcag
     6001 tagctgcaat attattttca ttttacattc tttatgatac gcaaaatatt atccgcggaa
     6061 attatgaaac tccaatcgaa ggtgcagtag cactttatct tgattttgtt aatcttttcg
     6121 tatctttact taatatctta agaagcttca atagcagata agtttttgtg ggatttttct
     6181 cacaaaaact tttcaagttt caaaactttt caagttttat ttagttaaaa taatcattta
     6241 aaaattaact tttaggaatt ttcaatgatc actcttttaa tcattttaca atttatcatc
     6301 gttgtagtta tttgtatagc agttttactt caaaaaagtt caagtatagg acttggagct
     6361 tatagtggaa gcaatgaaag tttatttggt gccaaaggac cggctggatt tttggcaaaa
     6421 tttacctttg tcatgggaat tttacttatt gcaaatacta ttggtcttgg ttatttatac
     6481 aataaagcta gcaaggactc actagcagag aaaattaaag tagaaaacaa caacactact
     6541 attccaagcg ctcctattgt gcctgctacc ccaaacacaa attctatcgc tccaagtgca
     6601 gcacaacttc caagcgatgt taattcaagt aaataattaa aggaaatgat aatgctaagt
     6661 gaaattttta acaaacaaaa aacccaaagt gaaaaatctt tagaagcctt aaaaaaagac
     6721 ttcaccactt taagaactgg aaaagttaat acccatattt tagatcatat tacagtggat
     6781 tattacggaa ctcaaactcc tttaaatcaa gtagcaactg ttttagcaag cgatgcttca
     6841 actattagca tcactccttg ggaaaaacct ttactaaaaa ccatagaaag tgctattgca
     6901 gctgcaaata tcggtgtaaa tccaaacaat gacggcgaaa gtgtaaaatt atttttccct
     6961 ccgatgacta gagagcaaag agaagaaaac gtaaagcaag ctaaagctat gggtgaaaag
     7021 gcaaaagttt ctataagaaa tatacgcaaa gatgccaacg atgcagttaa aaaactagaa
     7081 aaagataagg caataagcga agatgaagca aaaaaagctt atgatgaagt gcaaaaactt
     7141 accgacgcct acacaataaa aattgatgag agtgtaaaaa gtaaagaaag tgaactttta
     7201 aaggtttaac gatgaattta gggcaaattt ataaagattg tggtgcttat ttagaagacc
     7261 attttttact aagttcaggt aaacattcgc aattttatct tcaaagtgca aaagttttag
     7321 agaatccaaa attagcagca aaactttgtg acgaacttgc aaagattatt gcaagctata
     7381 agatagaatt tgatagcatt tgttctcctg ctttaggtgg aattttagca ggttatgagc
     7441 ttgcgagagc ttgtagtaaa cgttttatct tcactgaaag agtaaataaa gaaatgactt
     7501 taagacgtgg ttttgaggtg aaaaagggtg aaaaatttat aatttgtgaa gatatcatta
     7561 ctacaggtgg tagtgcttta gagagtgcaa aaatcattga aagtttaggt ggcattgttg
     7621 taggttttgc agcattggca aatcgtggtt tttgtgcagt agaaaattta aaatctccaa
     7681 gaaaagataa tgcgaaatta cctgaaaatt taccactctt tactctagga aattttgaat
     7741 ttgaaattta tgatgaaaca aattgtccac tttgtaaaaa agggagtaaa gctataaaac
     7801 caggaagccg tggaaattaa atgaaaacta aagcaaaaat tagctctaga tggctaagat
     7861 ttagagcttt gcttatagat atttttctta tttatgttcc tattttgtat ttattttatt
     7921 ttctattagg ctctaaagaa tcttttttaa acaaccattt tatcacaact ttatgtactt
     7981 ttttatttgg tttgattcaa gctatttttt taacaaaaaa ggcacaaagc ccaggtctta
     8041 aagcatatga tttatatctt attgatataa aaacgggaaa gaaactaagt tttcttagaa
     8101 ttttactaag atatgtgata tttattataa gttttggctt actctttggt ttatttgtca
     8161 gttttgtaag aaaagatcgt ttaaatttac acgatatttt aactcaaagt tgtatagcta
     8221 ctaaagcata aagaaaggtt aaaaatgcaa agaaaaagaa tttacaatcc aagttcaaac
     8281 gaaaccttag gagatcgtaa agtttttgat ggtaacccac atggaatttt aaattttact
     8341 aaggcaaaat atacttgggc tttaaaactt tgggatttaa tggaggcaaa tacttggttt
     8401 ccaaaagaag tggatacaac taaagatgca cttgattatc gctgtaattt aactgcaggt
     8461 gaaaaaagaa tgtatgattt ggtttggagt cagcttattt ctatggatag ttttcaaacc
     8521 aataatttag cagacaatat caacccttac atcacagctc ctgaaatcaa tgcagtttta
     8581 gcacgccaag cttatgaaga ggcaaaccat tcaaaatctt acgctgttat ggtagaagcg
     8641 atttgcgata atacagattt gatttatgaa atggaaaagc atgatgaaac tttgcgtgaa
     8701 aaaaatgact ttatttcaag catttatgaa gaattagcag gcgatgtaga tgataataaa
     8761 cttcttttgg ctatggtggc aaatcaaatt ttagaaggag tatattttta tagtggtttt
     8821 actgccattt acgcacttgc acgtgcagga aaaatgctag gttcagcaca aatgatccgc
     8881 tttatccaaa gagatgaaat cacacatctt ttattatttc aaaatatgat caattcagta
     8941 cgcaaagaaa gacctgattt gttccatgat gaaaatatca ataaaattta tgatatgttt
     9001 aaaaaagctg gagatcttga gatcaaatgg ggtaaataca tcactcaaaa tcaaatcatg
     9061 ggctttactg atgatatcat agaagaatat atccattatc ttgtagatca aagattaagc
     9121 gcgatcaatt tagataagtt atacaatgca aaacatccta ttaaatgggt agatgatttt
     9181 tcaaaattta acgatcaaaa gagcaatttc tttgaaagta aagtaacgaa ttattctaag
     9241 ggtagtataa gctttgatga cttctaaaac ttctttagcc ttgctttgtg atttttatga
     9301 atttacaatg tctcaaggct atttcaaaaa caataaaaaa gatcaaattt gttattttga
     9361 tatatttttt agaaaaattc cagattcagg atcttttgct atttttgcag gtcttgaaga
     9421 tattttagac tttgttgaaa atttgagttt tgatgcagaa gatatagaat ttttaagaaa
     9481 acaaggtatt tttgatacag aatttttaga ttttttagct aactttaaat ttaagggtga
     9541 aatttatgct atgcgtgaag gagaagtgat ttttccaaac gaacctttgc tatgtattaa
     9601 agctacaacc atagaagcac agcttttaga aactttttta cttttaagtt taaaccacca
     9661 aagccttatt gctaccaaaa ccaatcgtat cgtgcgtgca gctaaagaca gtaaaatttt
     9721 agaatttggt tcacgcagag cacaaggaag tgaagcagcc ttaaaaggag caagagcagc
     9781 ttttatagga ggttgcatag gaagtgcttg tactttagca ggaaaaattt ataatatccc
     9841 tatcaatgga actatggcac attcttgggt gcaaatgttt gaaaatgaac ttgaagcttt
     9901 taaagcttat gtgaaaattt atccaaaaaa tcctgttttt ttgattgata cttatgattg
     9961 tctaaatagc ggacttaaaa atgcgattaa agtttttaaa gaatttggta tccaagaagg
    10021 cggtgtgaga atagattctg gaaatttact taagttgagt ttgaaaatca gacaagaact
    10081 tgatcaagca ggacttcaaa aatgtaaaat catagtttct aacgcccttg atgaatggag
    10141 tattaaaaaa ctcaaagaac aaaatgcacc tattgatatc tttggtgtag gtgaaagatt
    10201 gatcactgct tcaagtgacc ctatttttag ttgcgtttat aaactcgcag ccttagaaga
    10261 tcaaggcata aaacctaaaa tcaaaatcag cgaaaataac gaaaaatcaa ccctacctca
    10321 ttttaaaaag ctttttaggg tttatgataa aaacacgcaa aaaatccttt ttgatgagct
    10381 ttatgttttt gacgaaaacc caaatcaaga tgaaaattta gaacgcaaag aacttttaga
    10441 attagtctac aaagaaaaaa gacttcttaa aaagtcatct ttaaatacta ttcaagatta
    10501 tacaaaagag caaatttcaa aactcgatga gagtttttta gatcttgatc gttttgtgaa
    10561 atttgaagta aaactctcac ctaaacttca aaatatcact gaagatcttt taaaaactcg
    10621 tttttaaaat ccacataatt taaagcggat tgttttagaa agcttatttc ttcatcgttt
    10681 aattcacgca caaattttgc aggatttcca agtatcaaag agcgtggcgg aaatttttta
    10741 ccctttgtta caacgcttcc agcacccact atgctatctt cttctatcaa agcattgtcc
    10801 atgataacag cattcattcc gattaaaaca cgatttttta tcacacaagc atggataacg
    10861 caattatgtc ctatggttac atcatctcct attatcgtag gaaaaccagc gtcttttaac
    10921 tttccttttt catcaaattc cctatgccaa acatgcaccg tgctaagatc ttgaatattg
    10981 gttcttttgc caatttttat aaaattaaca tcggctctta aaacacaatt aaaccaaata
    11041 ccactttcat ctcctatttc tatttctcct atgattttag cgccctctgc aacaaaaaca
    11101 ttttgaccta gtttgggact atgattttta aattttataa gcattttttt cctttttatt
    11161 taagtatagc taagtttaac tctatttcaa cttttttagt tacaattttt atttaaattt
    11221 ataggagaag taatgaacgc atttgaacaa aaaagatgtc aaaatatggc tgaagaaatt
    11281 gcacaaaaag tttttatcaa tgaagaactt tttaatgctt tttgtcaaat tccgcgtgaa
    11341 attttttctc ctttaaaagc ccatgcttat cgccttgatg ctttgccttt ggcaaattct
    11401 caatggatta gttcaccttt aactgtagct aaaatgacta tggccttaga ttttaaaaat
    11461 gctgatagta ttttagagat aggttgtgga agtggctatc aagctgcgat tttaagcaaa
    11521 gtcataaggc gtgtttttac catagaacgc atagaaaatt tagccaaaaa agccgctcaa
    11581 actttcagag aattagaact ttttaatatc aatgtaaaat ttgatgatgg gcaaaatggc
    11641 tggaaaaatt atgctcctta tgataggatt ttattttctg cttatgcgac acaaattcct
    11701 gaaattttac tcgatcaatt aagcgatgac gggattttag tcgctcctat tttacacaat
    11761 ggcaaacaat tcatcacacg ccttagaaaa aatggcacaa atttacaaaa agaaatttta
    11821 gaagaatgtt tatttgtgcc tatagtagat ggaaaagaat aaactttttt acaaaattta
    11881 ttaaaaactc tttagagcct ttcttaactt ttcgctcatt tcatcaatat gttctttttg
    11941 caaaattaaa ggaggtaaaa atctcaaatc attctctcca caacttatca gtaaaagtgc
    12001 attttcttgg catttttgaa tgaccttgaa tacttttaca cttttatcaa gactcagccc
    12061 ttgcataaac cctaaacctt tgcgtttttt acaaaaatca aattctttga tcaactcatc
    12121 taaactttgc tctaaataag gcgtgagttt attgacattt tctaaaattt tttcttcttt
    12181 aaaaatttca aaaactgtat tcactcctgc acaaaccaaa ggatttcccc cataagtgct
    12241 accatgatcg cccgcttcta aagaattgct tgctaccttt tgatttatta caaaagcacc
    12301 cacactaagc ccacaaccca aggccttcgc tgaagtcatg atatcaggca aaatttgtgc
    12361 gtgctcatag gcaaaaaatt ttccacttct acccatacca cattgaattt catcagcgat
    12421 taataatata tctttttcat cgcaaagctt tcttaaggct ttgtaaaaat ctttatttgc
    12481 aggatttatc ccaccttctc cttgcacgct ttctaagata atggcacaag ttttttcatt
    12541 caccagtttt tcaacgcttg aaatatcatt atattttgca aatttaaccc ctgaaattaa
    12601 aggtttaaaa ggcttttgat atttttcatt agcagtaagc gataaagccc ctaaagtacg
    12661 cccatgaaaa gaatgcttaa aagcgataaa ttgtccactc ttaatgcctt tgttaaaagc
    12721 gtattttcta gctgttttca tcgctccttc tatactttct gtaccagaat ttgtaaaaaa
    12781 aacacgctct aaagcactag ctttggctaa atttttagct gcagcagcta tgttttcatt
    12841 ataatataaa ttgctagtat gtaaaagttt atccacttga gctttgattt tagcattaaa
    12901 tttagcatga ttatatccta aagcacaaac acctatacca cttgaaaaat caagatattt
    12961 tttagcctta tcatcaaaaa gataaacccc ctgccctttt tctaaaacta tatcaaaacg
    13021 cttataagta gggacaatat gactttgttc tttataatcc attttcatcc tttaacccac
    13081 caaagtgcct ataccttcat cagtaaaaaa ctcaagcaat aaagaatgct tcacgcgtcc
    13141 atctaaaata tgcacctttt tgactccatt ttcacaagca tcaatgcaag attttaattt
    13201 tacatgcata ccaccttcta ttttaggagc taaaatttta gcttgttcaa ggctaatttt
    13261 agaaatcaaa gaatttttat cactaaaatc ctcataaagt cctgcagtat cggttaaaaa
    13321 agcaagtttt tcagccctta aagccttggc gatcgcacaa gctacgtcat cagcgttaat
    13381 attataagta ttaaaatcct catccatgcc aataggagca atgataggta aaaaatcttt
    13441 ctctaaaagc tcttctaaaa ttttcgaatt taccttttgt atcgtgccaa caaaagctaa
    13501 attttcatct tttttcacac attctaaaag cgcgccatct ttaccacaaa gccctatggc
    13561 tttaactcct aaattttgca aactatggac taaattttta ttgatatgat ttaaaaccat
    13621 gctggctact tcaatagtga ctttatcact aaccctaaga ccgtttttaa actcactctt
    13681 tacgcctaat ttttcacaca tagcagaaat atcttttccc ccaccatgta caataatagg
    13741 ctttaaaccc acgagtttta aaagagctat atcttgcatc acacaatgct ttagctcttc
    13801 attttccata gctgatccgc cgtattttat aagtataatc ttagaattaa atttgcgtat
    13861 ataaggcaaa gcttcgatta agacattagc tttttctaaa tatttttgca tgatcattcc
    13921 ttaagcatta aagctagttt gattatactc atttaaagaa agatcgtaat aattcgcatc
    13981 ctctcttaaa gtaaaaccat aatgtttcca aaactcattg cctaaatcat tgtttttaaa
    14041 agcgattaag gcgattttat taatcttttg agcttttaaa gcctcaagac aaaatttagt
    14101 catctcgtgc gctataccct tttttctatg atctttatgt acacatacat gataaaatcc
    14161 tcctatgcgt ccatcatgcc cgcaaagtat acttcctaca atttcttcat caaccactgc
    14221 tacaacgcta agatttgggt ttctatctaa aaaattttct atattttctt tgctatcatc
    14281 aatgcttctt atcccaaagc cttttatctc acaccaaagc ttataaacgg cttcataatc
    14341 gcttttttgc atagctcgta ttaacatttt tatcctttac aaatttgcaa agaatttaag
    14401 tccttcatct tcatcaaaat caaacattaa attcatattt tgaacagctt gtcctgctgc
    14461 acctttgatt aaattatcaa tagcaccaag cacaataaca cgctttgtgc gttgatctac
    14521 actaaaattt atatccgcaa aattgcttga tttaacccac cgagtctgcg gaagcgactg
    14581 cggcggtaaa agccttatga atttattgtt ttgatagtat tttgtataaa tatcgcgtat
    14641 atcttgttct tgcaaatcct cttttaaatt tgcataagca ctgattaaaa ttcctctttg
    14701 catagacaca agatgagggg taaattgtag agtgattttc tttttggctg catagcttaa
    14761 atgctcttca atttcaggag tatggcgatg caaagctaaa ttataagctt tgatattttc
    14821 attaacttca caaaaaagat tttccacctt tgcacttctt cctgctccac ttaccccact
    14881 ttttgcatca ataataactg agctaaaatc aatgatcttt tctttaaaaa gtggataaag
    14941 acttaagata gaacaagtgg tataacaacc tggatttgcc actaaacttg ctttttttat
    15001 ctcttcttta taaagctcac aaagtccata aaccgcattt tgcaaaagct cttgattagg
    15061 atgagtgaat ttataccaaa gctcataatc tttaggattt ttaagacgaa aatccgcact
    15121 taaatcaatg attttcatct tttttaataa attctcattt aaaagtttag cactaaattc
    15181 atgcggagta gccaaaaaca aaagatcaag ttcaagttca tctaaatttt tattttcaaa
    15241 acataaattt aaaggggtgt taggataaag atcttgataa ttttgcccca cgctagaact
    15301 cgaacccaaa taagaaattt caaccttggg atgattaagc aaaatgcgaa caagttcatt
    15361 tcccgcataa ccactcgctc ctaaaatccc aacttttatt ttcatcttta tcctttaaat
    15421 gtaaaagcaa gtattataaa
//
LOCUS       DAPIWV010000035        15084 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.036, whole genome shotgun sequence.
ACCESSION   DAPIWV010000035 DAPIWV010000000
VERSION     DAPIWV010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15084)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15084)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15084
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.036"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            29..1318
                     /gene="cetZ"
                     /locus_tag="RJ272_000775"
     CDS             29..1318
                     /gene="cetZ"
                     /locus_tag="RJ272_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HDV7381885.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLEDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYNDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(1341..1988)
                     /locus_tag="RJ272_000776"
     CDS             complement(1341..1988)
                     /locus_tag="RJ272_000776"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HDV7381886.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKIAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(1963..4092)
                     /locus_tag="RJ272_000777"
     CDS             complement(1963..4092)
                     /locus_tag="RJ272_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7381887.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIHDSRSYSSYLLKKHNINLNKIQELQNHENIQNLSNHTSDLTLLAQNGTIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAKKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLVKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKSLAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            complement(4089..4379)
                     /locus_tag="RJ272_000778"
     CDS             complement(4089..4379)
                     /locus_tag="RJ272_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HDV7381888.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDSAKLANFPLQAKVEEE"
     gene            complement(4379..4981)
                     /locus_tag="RJ272_000779"
     CDS             complement(4379..4981)
                     /locus_tag="RJ272_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7381889.1"
                     /translation="MKKILALILISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            complement(4992..5444)
                     /gene="smpB"
                     /locus_tag="RJ272_000780"
     CDS             complement(4992..5444)
                     /gene="smpB"
                     /locus_tag="RJ272_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDV7381890.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGRNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            complement(5441..6208)
                     /locus_tag="RJ272_000781"
     CDS             complement(5441..6208)
                     /locus_tag="RJ272_000781"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDV7381891.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSMQLGSDIAFFLSGFHSANVSGCGEIIKEF
                     EDDIPNLKWTFPQIFCQTKAVYDEFDREIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDQ"
     gene            complement(6205..6432)
                     /gene="csrA"
                     /locus_tag="RJ272_000782"
     CDS             complement(6205..6432)
                     /gene="csrA"
                     /locus_tag="RJ272_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDV7381892.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            complement(6426..7244)
                     /gene="truB"
                     /locus_tag="RJ272_000783"
     CDS             complement(6426..7244)
                     /gene="truB"
                     /locus_tag="RJ272_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDV7381893.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLTNLKQII
                     NQMQGIISYTPPQFSAKRINGTRAYELAKKGIEVNLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYIDLKPNF
                     IKDLNKLENGAKIFVKELDFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            complement(7241..9316)
                     /locus_tag="RJ272_000784"
     CDS             complement(7241..9316)
                     /locus_tag="RJ272_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDV7381894.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEDKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLNGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            complement(9313..9750)
                     /locus_tag="RJ272_000785"
     CDS             complement(9313..9750)
                     /locus_tag="RJ272_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381895.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            complement(9744..11465)
                     /locus_tag="RJ272_000786"
     CDS             complement(9744..11465)
                     /locus_tag="RJ272_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HDV7381896.1"
                     /translation="MLEWDLSALFHDKESLQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYNIAKNAFNQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTDKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQRMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            complement(11469..12356)
                     /locus_tag="RJ272_000787"
     CDS             complement(11469..12356)
                     /locus_tag="RJ272_000787"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HDV7381897.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVLRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            complement(12366..13589)
                     /gene="sstT"
                     /locus_tag="RJ272_000788"
     CDS             complement(12366..13589)
                     /gene="sstT"
                     /locus_tag="RJ272_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDV7381898.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYSISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            13729..14925
                     /locus_tag="RJ272_000789"
     CDS             13729..14925
                     /locus_tag="RJ272_000789"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDV7381899.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
BASE COUNT         4948 a         2256 c         2255 g         5625 t
ORIGIN      
        1 ataatttatt attaaaaagg tgagttttat gtttggtgct aagaaaaata atactgaaat
       61 aattgaacaa cttgaaaaaa agtgtaatgg tttagaagat attttaagat ctattgggaa
      121 tactatggcg gtaattgaat ttaccaccga tggcgttatt ttagaggcaa atcaaaattt
      181 tttaacaact atgaaatact ccctttcaga gatcaagggt aagcatcata gtatgttttg
      241 tttgcctgaa gttgttaatt cttcagcata taatgatttt tggaaagatt taagagatgg
      301 aaaagctaga agtggtcttt ttagacgtat agctaaggga gggatagatg tttatttaga
      361 agcaaattat cttccaatta gtgataataa tggttatgtt tataaaatta ttaaatttgc
      421 caatgatata actcaaagac attatgaaat gcttgatctt agaaatacta ttgctgctgc
      481 taatcgttct atggctatta ttgaatttaa acctgatggg actattatta cggctaatga
      541 aaatttttta agaactatgg attttaatat tgatgagatt aaaggaaagc atcatagcat
      601 gttctgtgat tctaattata gacactctaa ggactatgtt caattttggg aagatttaag
      661 agagggcaaa tttcaatcag gtaaatatat aagatacgga agaaataata aaaaagtata
      721 ccttgaagca agttataatc cggttaaaaa tgatgatgga aaaatttaca aggttattaa
      781 atttgctaca gatataagcg aacaagttaa aaaagatcaa gaaaaacttt gcctcataag
      841 cgaacttgca gaaaaaaatg ataatcttac tcaagatgga gatcgtgtaa ttgaaaacac
      901 tgtttcaaat gttcagaata ttgctgatat gatgtctcaa agttcaaatc ttgtttcctc
      961 attaaatcaa caatcagatg aaattaaatc tattattcag actattagtg atatcgctga
     1021 tcaaactaat ctgcttgctt taaatgctgc tattgaggca gcacgtgctg gtgaacatgg
     1081 tagaggcttt gctgttgttg ctgatgaagt aagaaattta gctgaaagaa cagggcattc
     1141 ggttaatgaa attaccacta cgattaattc tattcgtaat gttacatcac aagtggttga
     1201 gagtattaaa agcggtttag aggatgttaa tcagagtgtt gaacttgcaa aagaagcaag
     1261 agagtgtatg gagaaaattc gtgaaagctc tgctgaagtt gctaaagcga tgtcataagc
     1321 gtgattttca cgcttatttt ttaagtaatt aaatctttaa aatttttaaa accactttct
     1381 tggttgcatt tttcttttaa aatatttaaa aattctttcc tagaaatatt atgagcgccc
     1441 ataaattcta aatgttggtt ataaacttga caatctatga taaaatcata aggttttaat
     1501 aaatcacaaa gtttaatcat agcaatttta gatgcatttt ttttaatgct taccatgctt
     1561 tcaccaaaga aaaccttgcc taaaattaaa ccataaattc cacctataag ttcattattt
     1621 tcataaagtt caaggctatg tgcatagcct tgggtaaata acttataata agtggtaata
     1681 aattcatcat ctatccagct ttgagagcgt gtatcgcgac ataatgtaat taattttaaa
     1741 aaatcataat caagtttaat ttgatagaga ttaataaatt ttttcatatt tttttggatg
     1801 tgaatttgat ttggaattaa aatgcatcta ggatctggac accaccaagt tacaggttta
     1861 cttgtccatg ggaatagacc aaaagtataa gcttttacaa taaaatcagc ttctaaattt
     1921 tgacttaaaa atacaggagc atttttaggt gcattgagta atttagaata taaattcgag
     1981 ctttccattt ttaccaagtt tgattttagc tataccgcct tttttaagct ttccgaataa
     2041 aatttcatca ctgatttttt ctcctatctc ctcagaaatt atgcgtttta aaagccttac
     2101 tccaaattct ttattatagg cttttttagc taaataaatt ttagctttat catccactga
     2161 taactttata ttatttaaat ttttagaaat ttcatcaagt tctttttcga taattttaac
     2221 aagtatagca tcgtttaaat cattaaaatg taaaatttta tcaatacgat taataaattc
     2281 tggagcaaaa aagtctttga tagcacgatt acttttttct tcatttttac ttaaaaaacc
     2341 aagctcattg ctttctttaa gtcctagatt agatgtcata ataatgattg tatttttaaa
     2401 atctacttta agaccgctat tgtcggtgag ttcagcattg tcaaaaatct gtaaaaaggt
     2461 attgcttaaa tcaggatgag ccttttctat ttcgtcaaaa agaacaagac tgaaaggatt
     2521 tttgcgaata gcattgctta aaagtccacc ctcttcaaaa cctatatatc cagctggaga
     2581 tcctattagt ttacttatag catgtttttc tgcatattca ctcatatcaa agcgttctaa
     2641 atttaaacct aaaaattcag ctaaagattt gcaaagttct gtttttccaa ctccacttga
     2701 tccagtaaac aaaaacactc cgcgtggtgt attggaattt ttaaatcctg cgaaactttg
     2761 cttaagtgat gaaacaaggc tatctataac ttcatcttgg ccaaaaattt ttgcttttaa
     2821 atttgttttt aaattcatta aagctttgtt ttgatcgaat tcaaacattt tatgatggtg
     2881 ggtcattttt actaaaacat tttctaaatc ttttaaattg gcattttttt tagcttttgg
     2941 atttaaagca aaagaagccc caagttcatc gatcagatct atagcacaat caggtaaaaa
     3001 tttatcatta aaaaattttt taccccaaat tacagcatat tgaagaattt catcgtttaa
     3061 ttttatatga tgaaattctt catatttgtt ttttaatcct ttcagaattt gcaagctttc
     3121 ttcttggctt ggttcatcta catttatttt agcaaaacgg cgacttaggg gtttattttt
     3181 atcaaaagta tttttatatt ccataaaagt tgttgcacct atgcatttta aagttccatt
     3241 acttagagct ggttttaaaa gattggaaaa atcagtatga gattctcctg tacttccagc
     3301 tcctactata gtgtgaattt catcaataaa taaaatagca ttaggtattt tctcaagttc
     3361 atttaaaatt tctttaattc ttttctcaaa atctccacgg tattttgttc ccgcaagtat
     3421 actagccata tcaaggctaa aaatttttgc attttgtaag tttttaggca cctttttttt
     3481 cgcaatagcc aatgctaatc cttctacaat ggccgttttg ccaactcctg cttctcctac
     3541 taaaatagga ttatttttct tgcgacgtga aagaatttgc atcattcttt caagttcaaa
     3601 ttttcttcct attaaaggat caatcgtgcc attttgagct aaaagtgtta aatcacttgt
     3661 gtggttgctt aaattttgta tattttcatg attttgaagt tcttgaattt tgttaagatt
     3721 tatgttgtgt ttttttaaga gatagctaga ataacttctt gaatcgtgta tgagcttttc
     3781 taaaaaatct ataattttaa tttcattatt tttattttta gatgaaagta agatttcatc
     3841 taaaacaaca gatattgtag gttctatttc ttgtttaata acttgattgt tttgagaaat
     3901 gtaatttttt aattcagttt ctagaagttc aagatctcca tctgaaaatt cttcaaatat
     3961 atccttaaaa tcagtgctta gttttagtaa tgcaaacagt acatgctcac aggtaacaaa
     4021 ttcatggtgg tttattaagc ttagattttt ggcattatca agatattttt gtaaattttc
     4081 ttggtatttc attcttcttc tacctttgct tgtagcggaa aattggcaag tttagccgaa
     4141 tctataactt ttttttgttt tgaaagagct atttcctggg tgtaaatgcc acaaattcca
     4201 gaaccattgt ggtgaatttc taacattgtt tgacttgctt tctcaaggtt ttgatgaaaa
     4261 atattcatca aaatttctat aacaaaatcc atggttgtta catcatcatt taagagtata
     4321 actttataca tttttggttc actaagtttt gtttgctcta gagtttgggt ttttggcatt
     4381 attttccttt gtagatttta tttaaatctt cttgcatgag ttctgttgga attttaccaa
     4441 gataaaaatt tgttggagta ttattattcc agtaatcgct tattttttga taaattccat
     4501 tttttaaaac aactttaaaa ggaagttgct ccatattttg atagtctata tcttttaaaa
     4561 tttgagcaat aatacgatca ttagagctgc cattgcttag aaaatagtaa gcaccataat
     4621 catccgcgaa ttttttaact gtttcatcgc taacatcttc aaaatgtgta agtcctataa
     4681 tgataaattt gctagaatta tttttccaaa gtttgctaag atctaaagct tcttctttac
     4741 atggggtgca aaaagtgcca aaaaaatcaa acattagaac ttttccttcc tctccttcta
     4801 ccacaaaacc tttatctgtt cttattaaag ttttgcttcc accatttaca ctatttaaga
     4861 ctattttatc tcctttgtga tactcttcaa acataaaatc attttgaatt tcttcttcct
     4921 tggagcaagc attaagaaaa aatgctaaac ttattaaaat tagggctaaa atttttttca
     4981 tttattttcc tttatttgta atttttcata gcagctttag cttctaaatc ggcttgcttt
     5041 ttctttaaag tttcacgctt gtcgtgcaaa tttctccctt tagctaaagc aagggtagct
     5101 tttactttat tttttgtgtt aaaataaaga tctaatgcaa cgatagtata tccttctata
     5161 cttactttac ctaataattt atcaatttgc tttctatgca ttaaaagctt tctagcacct
     5221 ctttcttcgt gtttatagaa agaatgtgta gtatgaagca atgaaatatg agaattaagt
     5281 aaaaaaatct cattttttat aatgcgaaca aaagagtctt taagatttgc tcttcctgct
     5341 cttaaggcta caacttcact tcctttaagg acaattccgg cttcaaagcg ttctatgatg
     5401 ctataatcaa ataaagcttt tttatttctc gcaataattt tcattgatca accttaaaaa
     5461 cactactacc gctaccgctt agaaaaaaat cttcttgcaa gtaagacttc attttaggat
     5521 ataaagttgc acaaggagta aataaatcat ttaattcttt gtttttaaag ttttgtaaca
     5581 actcttttgt gctgagtttt ttgtagattt gcgcttgatt attgtttttt tgaaagtcaa
     5641 atatttctct atcaaattca tcataaacag ctttagtttg gcaaaatatt tgtggaaaag
     5701 tccattttaa attaggtatg tcatcttcaa attcttttat aatttcacca cagccactta
     5761 cattagcaga gtgaaagcca cttaaaaaaa aagcaatatc acttcctagt tgcatgctta
     5821 aatttataag ttcttgtagg tttaatttta aatttagggt ttcatttatt agcagtaaaa
     5881 aactcgcaca atcgctactt ccaccgccaa gtccagcaca tactgggata ttttttgtga
     5941 gttttaggct ttttttgcta aataattctt ttaattcgtt attatatctt ttagaaagta
     6001 gcaaataagc cttttgaata atattatttt cgcatttaaa attactaatg atttcaaatt
     6061 cttttttaga gtctgattct ttatcaacaa gctcaagctc atcaaaaaga tcttttaaaa
     6121 gtataaatcg tgattctaaa agatgatatt ttcttgagtc aaaaccggta agttttaaaa
     6181 aaatatttgc tttagcgtaa gctttcattt gattagtttt ttgcttaagt catcaagttt
     6241 aatatcattc tgaacaacag aatgtaaatt ttcatccttt acttgttgaa caagttcttt
     6301 tctaagtatc ataagggatt ttggagcttc tatgcctatt ttggcatatc ctttccctgt
     6361 ttgaacgact ttgatttcta taccttctcc gataattata ctttcatttt cttttcttga
     6421 taatattaac atttttcaac cttatttaga agatatttta ctgtattttc tttaatatta
     6481 attatgctaa aatatttctc tgtttcaata taataatctc cttcatcatg aaaatctaat
     6541 tctttgacaa aaattttagc accattttct agtttattta aatccttgat aaaatttggt
     6601 tttaggtcaa tgtattttaa cacatttaag cttttctcat tattataaac aaatttacct
     6661 tctttaatgc gctctaaaga gcttaaagtc gcattaatac ctagttttct agcaaaaagt
     6721 tcacaataag atcttatata agcaccttca ctgactgtga tttcgatatt taaaaaagga
     6781 tgattatagc ttaaaatctt gcaatcaaat acttccattt gacaaggttt taaatttact
     6841 tctatacctt tttttgcaag ttcataggcg cgagttccat tgattctttt ggcgctaaat
     6901 tgcggtggtg tataggagat aattccttgc atttgattaa tgatttgttt taaatttgta
     6961 agatcaaatt cttttatatt ttgaatttct tttatatttt gatcatcaag acttaaagag
     7021 taaactccaa gccataaagt agctttatag gtttttggag ttttttttaa aaaacggaaa
     7081 agttttgtgt attgtccaaa tgcaacgatt aaaacccctt tggcgaaagg atcaagagtg
     7141 ccagaatatc ctgctttttt atttttatat tttttcttta aagtgcttaa aaaggcatta
     7201 gagctcaaac cccttggttt aaaggctgca aagatcttgt tcatactgct ttttccacaa
     7261 agcttgccat gattacacgc attatgccac caaaattaat attaagcttt tcctcttttc
     7321 cgcttttatt aacttcaaca accctgccaa tgccaaaaat tttatgttta actagatctc
     7381 ctttgcaaaa actagttttt tgtatatttt gattttttga tttttcattg attaatttac
     7441 tttcttctaa gaagcggcta ggattgatgt ttgctcttga accatgataa aaacgagaat
     7501 ttgcaacact tattgtgaga aatttcttgg cgcgagtgat ggcaacataa gcaagacggc
     7561 gttcttcttc gagattttct tcgctattta aaggaaaaaa tccttcatca aagcctatta
     7621 taaaaacata atcaaattcc aaacctttgc tagcatgaat actcatcaag caaacacatt
     7681 cttcatctaa attatcttga tcgcttaata aagaaatttc actaagtaga tcttctaaag
     7741 aagctttggg atcttctttg agtttttctc ttagattagc ataaaactca tcaagatttc
     7801 tgattctttc atctccatca tcttgctctg aaaaataatc tttaatttta aataattctt
     7861 ctatattgtc aaaaaccttt tttgcattat cgtagctttt tagagtgtga atattttgta
     7921 taaaaatatt tgcttcattt tgtgcttttt ttgttgttaa aattcctaca ccaccatcgc
     7981 tttcgcatag ggcatcaaaa agtgaaattt gacgtttttt tgcatattct tctaaatttt
     8041 ttagggcttt ttctcctatg gatcttttgg ggcgattaat aatacgttta aacgacaaat
     8101 catcgcttgg atttaagata agtctaagat acgagattaa atcttttatt tctaatctct
     8161 cataaaaacg cataccatta agtagtttat aagaaatttg tttcttcata aatgcttctt
     8221 ctattgctct tgatagtgca ttaactcgaa ataaaatggc gatctcttta gcttctactc
     8281 cagaatttag caattttttc acttcttgag caatatataa accttcatct ttttcgtttt
     8341 cgttttttaa tattttaata ttttccccag tatctttagt gcagattaaa gtttttccaa
     8401 gtcgttgctc attgtgagat atgagattat ttgctgcttg taaaatagtc cctactgaac
     8461 gatagttttg ttcaagtttt acaagtttaa catttttaaa atcgttttga aaatttaaaa
     8521 tattttcaat ttttgctcca cgccaactat aaatactttg atcatcatca ccaacaactg
     8581 tgatattttc atgcatacaa catagatttt ttagaatttt atattgcaag gtattggtat
     8641 cttgatactc atcaactgta atgtaattat aaagtaagct ttgttctttg gcaaaattta
     8701 tatcattttc taaaatgaga ttgcttagca ataaaagatc atcaaaatct acaaaatttt
     8761 gttttaataa gtattcttca taagcacggt aatagttggc aaatttgtat tcattttgat
     8821 atttttcaaa attatgttct tttagtaaat ttaaatcttc aaagacattg cttactcttt
     8881 tgtcttcatt tttgcaataa gatatgtatt tgataatatc atagacatta tctttgtttt
     8941 tatcatggat taagtcttta attatttttt ttgtatcatc tgtatcgata acaataaaac
     9001 tatttttacg ctccaatctt tcaaaatgga gttttaaaaa taaaagtcca aatttatgaa
     9061 aggtacaaag caaaggattg tgattgcctt gcagaaaatt taatgctcta tgacgcataa
     9121 cactagctgc tttatttgta aaagtaagag taagagtgtt atgcgagggg atgcctactt
     9181 caccgataag ataagcaaga cgagtggtaa tagttttggt ttttccacta cctgcacccg
     9241 ctaggataag catagctcca tcaatgtgac ttaccgcttg tttttgacta tcatttaaat
     9301 cttcaaatag attcattttt tgaaaatatc tttatttttt ggattattta aaaatatatt
     9361 tttagatttt tgtaaatttt tactatcttc gcgtttataa aggctaaaat taacaaataa
     9421 aatgctattt tctatttgaa tttgcgtgat agctcctaaa tcaaccttta caaaactatc
     9481 aaaatcatca tttccaaaac ctgcgtgaaa ttgaatgaaa tctttattta gttgtatgga
     9541 ttcaaaggtg tatcctccaa gagcaaaaag agcataagga ttttgtttaa tatcaagctc
     9601 tttgggaagt tcagggttaa aatctatgaa atttgtattt gcaactatgg aaaattctat
     9661 attttcttct ataaggtgtg aaataacttc ataacaatgc ttttgcatgg tatggataaa
     9721 attttcattt tttaagattg tttctagcat gattgtaact ccatgaattc attgatgagt
     9781 ttttgaattt cttttatgcc tatttcccaa aaattttcat cttctatatc aaatccaaac
     9841 attcctacta gttcttttgg actcacgctt ccacctaaag aaagcatttt gatataaagt
     9901 tctttaaaat tttcacattt tttacttttg taaagtccat aaagagctaa aactaaaagt
     9961 tgtgcatagg cataagcata gcagtaaaaa ggagaatgga taaaatgagg aatataactc
    10021 caccaagaag cataattttt tgtaagtttt acgctgtctt gaaacatcct ttgagattct
    10081 tccatccaaa ttttattgat ttcttcggtg ctaagttcat tttcttgagc atgtaagcgt
    10141 ctttcaaaac aagtaaaatt aatttgtcta taaaaagttg caaaaatatc ttcgatttta
    10201 tttgcatata aagataggag ttcttctttt tttaacttat ctttaataaa atcaaatacg
    10261 agcatttcag caaaaactga agctgtttct gcggtggtta aaggcgtgtt ttgatttaaa
    10321 tagcttacat tataagaaag tttttgatgg atggtgtgtc ctaattcatg tgcaagtgta
    10381 aaaagatcac gccttttatc ggtgtagttt aataaaacaa aaggatgtgc atcagaagtt
    10441 gcagaatgtg aaaaagcacc cccttgttta ttttcttgtg gataaacatc aatccagcct
    10501 tgattaaaag cattttttgc tatattataa aattgcggag aaaaagcttg aaatgcctct
    10561 aaaacaatat ttttacttgt tttaaaatca aaacttgctt cttttcctat gggtgcatat
    10621 ctatcatagt ctttaagctc atcatagcct aaaatttgtt tttttctttt gtaaaattgc
    10681 gatactaagt taaaatgttt ttgcgcactt gctatcaaag aatcaacgct tttttgtgaa
    10741 atttgattgc tgatatgtct tgaaatttca gcattttcat aacctcttaa taagcttata
    10801 ttttttcttt ctgtttttat catattgata ataaaactta aaagtctgct atttttttgc
    10861 aaaactttac tgaatttttt agcagctttt ttgcgtatct ttctatcttc atcatacatt
    10921 ttgcttagaa tttcttcttc gctaagtttt ttaccttcaa aagggatttt taaagcactc
    10981 atactttcat caaaaagtct actaaaagca tttgcacctg tatttgaaag ataaagcata
    11041 atgcgttctt cgtttttgct aagattatag cgtttgtttt gcaataaatt agaaagataa
    11101 aaatcataat ctttgcaaaa agttgtaaat tctcgacttt tctcaggagc taactcgcaa
    11161 aattcaagct cgaaaaagag taaattttct tctatttttt tgcattcttc ttcgtattgt
    11221 gcgtaaaaag aaccattttg agtgttttta gcaaaaagca aataagcata agtcatgatt
    11281 ttaccaagag cttgatttaa attttcataa tcttttaaag cttgcaaaaa ctcattagca
    11341 tttaatgtat aaagtttatt ttcatagttt tttttgaaat ttaaactttg ttggatttga
    11401 tcttgtgtaa aattttgcaa tgattcttta tcgtgaaata aagcacttaa atcccattct
    11461 aacatttttt atccttcatt ttctagtatg agttttttaa gaacagccat tctaatagcc
    11521 actccatttt taacttgttt taaaactaaa gtcctttcat cgctcatcat ttcatcgctt
    11581 atgtcaatat tgcgattaac agggcctgga tgtagtaaaa taagcttttt atcctttact
    11641 aagctttttt gaatgcaaaa atcatttgca tagtctttaa gtgaagcata aacggtttta
    11701 ttatgtcttt ctgtttgtgt tctaagactc atgataatat ctgaatttgc tatgatattc
    11761 tcatcaagct tataatgttt tttaagatgg gtattaggca taaaatgtgg tggagctact
    11821 agggtaatat caagattaaa cctgcttaaa agttctatat tggacgctgc aacgcgggaa
    11881 tttttaatat cacctacgat gcaaattttt ttaccttcga catcgccttg aaaatgatta
    11941 taaatagtaa ataaatctag caaagcttgg gtaggatggg cgtgttttcc atctcctcca
    12001 ttaacaactg gacaatgcat atgctttgct aatatcaaag gaactcctga gtttgcgtgt
    12061 cttacaacaa tagcattagg actcatggca tctaaattag cagcagtatc ataaagagtt
    12121 tctcctttgc tagagcttga tcttaaaaca tcaaggcgta aaaccctagc acctaatctt
    12181 cttgcagcgc tttcaaaaga tgaaagggtg cgtgtagagt tttcaaaaaa aattgtcgtg
    12241 atactttttc cttcaagaaa agttctaggt ttttcatcta agaaatcact tgcttcttta
    12301 aaaagctcca taatttcgac tttattaaaa tcctttgtag tgatgagatg acgcatgttt
    12361 ttaccttatt tgatattgta atttaattca tttttagaac aaattgctgt aaaaagaaca
    12421 tctgtagaac tatttaaagc agtttcaaca ctatcttgaa taacccctat aataaaacct
    12481 atggcaacta ccttcatagc aatatcatag tctatattaa ataaagaaca agccaaaggt
    12541 ataagcagta aagatccgcc cgcaactccg ctagccccac aagctgcaaa agtggcaata
    12601 atgcttaata aaaaggcttg taaaagactg atttctatac caacggtatt ggctgcagta
    12661 agacttaaaa tagctatagt aactgctgct cctgccatgt tgatagtagc tcctaaaggt
    12721 atagaaatgc tataaaattc tttatctatg ccaagtttag cgcaaagtgc catatttaca
    12781 ggaatatttg ccgctgaact tcttgtaaaa aaggcaaaaa atgcactgtg ccttaagcag
    12841 ataaaaatta aaggaaaagg attttttctt gtataaaaaa agactattaa ggcattgata
    12901 acaaaagtaa caaaaagcat agtagctaca agtaaaatta aaagttttac ataacttagc
    12961 aaaccttgtg ctcctgtttg tgctacagaa ttagccacaa gtccaaaaat tccaaaaggg
    13021 gcaagtttta ctacaaattt aacgattttt aaaacccctt cattgatatc tataaaaact
    13081 tgttttgctt cgttagaaca gtgttttaat gctatacctc cagctattgc ccaagttaaa
    13141 attcctaaat aatttccgct tgaaagagca tttatgggat tatcgacaat tttaaataaa
    13201 agatctttga aaatatcact catgtgggtt ggagatgagt ttgtagcagt ttgaactcca
    13261 tctaaaacaa gctttacggg aaagaaaaaa ttagcaagaa ccgcacaagc tgaagcaaga
    13321 aaggtgccta ctatatataa aataataata tttttgatct tagcaccact ttgagaaaaa
    13381 tctttagtgc aaattgaggt taaaattaaa ataaaaacaa gcataggagc gatagctttt
    13441 aaggcacttg taaaaagtat tccaagtaaa tttgcaattt cagatatttc tttagaacta
    13501 atgcctataa gtattcctag tgctatacct atacaaattt gaactatgag gttgccttta
    13561 gcgtagcttt gaatgatttt agaaaacata aaaacctttt aaatattttt tatatcagaa
    13621 gttgatttta actaactttt gcttaatttt agagaatttt taatttatca agctttgata
    13681 agtttatttg gatacaattg tggttcattt taaatgaaag gactttttat gtatctattc
    13741 acttcagaag tcgtaagtgc aggtcatcca gacaagtgtg ctgatataat cgctgatacg
    13801 atagtggata tactcttgaa aaatgacaaa aattcaaggg tggcgagcga ggtttttgtc
    13861 gcaggaaata aggttgtgat aggaggcgaa gttaagtcaa atcacaaact tagtaaagct
    13921 gattacgata atttagttaa agatgtttta aaaaacattg gttatgacgg agcagggcat
    13981 tttagcaaag agcagtgttt gcatcctgat gaagttgatg ttatggtgtt tttaaatgaa
    14041 caaagccctg atatcaatca aggtgtcgat caagaagatg gcgaaacagg agcaggtgat
    14101 caaggtatta tgtttggttt tgcaagttgc gaagctgaag aatacatgcc agcagctatt
    14161 agttatgcaa gaatgctatg cgatagagtt tatgcttatg caaaagcaaa tccacatgaa
    14221 cttggagtgg atattaaaac tcaagtaact attgattatg gcactaaggc gaattttgaa
    14281 aattgcaaac cgcaaagtat ccatactata gtagtttctg caccttgtgt tgaaagtatg
    14341 aaaatagaag atttaagatc tttagtgatg aaacttatct tagatagtaa tttaccaaaa
    14401 gaactttttg atcctaataa aactagaatt ttaatcaatc caactggtaa atatgtcaat
    14461 cactcttctt tacatgatag tggtttaaca ggaagaaaac ttatagtaga tagttttgga
    14521 ggttattctc caataggtgg tggtgcgcaa tcgagcaaag attatactaa agttgataga
    14581 agtggacttt atgcaggtag atggttagct aaaaacatag ttgcagcagg gcttgctaaa
    14641 aaatgtatag ttcaacttag ttatgctata ggtgttgcaa aacctacttc ggtaagcgtg
    14701 gattgtatgg gcacaaatac cagtgtaaat gacgatgttt taagtgattt tgtaatgcaa
    14761 aatttctctt taacgccaaa ttggatccgt gataaatttc atctggataa accaagtaaa
    14821 gaaacttttc tttatgcgga tgtagcagct cgtgggcaag taggacaaaa ggactatcct
    14881 tgggaaaaac ttgatgctct agaacagttt aaaaagctac tttaaaaaat taacaatatt
    14941 atacaagctt aaacaaggct tgtataatta taaagaatta ataaagttat attaattttt
    15001 gacttagagg gatatttttc aatatccctc ataaatataa aagttaggaa ggaagctaaa
    15061 ttaatttagc tttggggtaa aaac
//
LOCUS       DAPIWV010000036        14979 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.037, whole genome shotgun sequence.
ACCESSION   DAPIWV010000036 DAPIWV010000000
VERSION     DAPIWV010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14979
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.037"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(3..1553)
                     /locus_tag="RJ272_000790"
     CDS             complement(3..1553)
                     /locus_tag="RJ272_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7381900.1"
                     /translation="MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
                     KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYSYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQEDEGFRLSKSRNKTI
                     KNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRI
                     AFNKKDFKSSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLESNHQIYLDTIK
                     NKKISWRN"
     gene            complement(1550..2437)
                     /gene="htrB"
                     /locus_tag="RJ272_000791"
     CDS             complement(1550..2437)
                     /gene="htrB"
                     /locus_tag="RJ272_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HDV7381901.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENLLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAIAIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCAENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(2427..3455)
                     /gene="waaC"
                     /locus_tag="RJ272_000792"
     CDS             complement(2427..3455)
                     /gene="waaC"
                     /locus_tag="RJ272_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HDV7381902.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNVVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFSLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3522..4316
                     /locus_tag="RJ272_000793"
     CDS             3522..4316
                     /locus_tag="RJ272_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7381903.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYEDELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLRSKKSDRSYTEVFAKACESEISKVRS"
     gene            4374..5360
                     /gene="galE"
                     /locus_tag="RJ272_000794"
     CDS             4374..5360
                     /gene="galE"
                     /locus_tag="RJ272_000794"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDV7381904.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            5354..7048
                     /gene="pglK"
                     /locus_tag="RJ272_000795"
     CDS             5354..7048
                     /gene="pglK"
                     /locus_tag="RJ272_000795"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HDV7381905.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFISFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEMLVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            7045..8124
                     /gene="pglH"
                     /locus_tag="RJ272_000796"
     CDS             7045..8124
                     /gene="pglH"
                     /locus_tag="RJ272_000796"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HDV7381906.1"
                     /translation="MMKISFIIATLNSGGAERALVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGLKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVERV
                     KLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVDCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            8117..9046
                     /gene="pglI"
                     /locus_tag="RJ272_000797"
     CDS             8117..9046
                     /gene="pglI"
                     /locus_tag="RJ272_000797"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HDV7381907.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            9034..10131
                     /gene="pglJ"
                     /locus_tag="RJ272_000798"
     CDS             9034..10131
                     /gene="pglJ"
                     /locus_tag="RJ272_000798"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7381908.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            10135..12276
                     /gene="pglB"
                     /locus_tag="RJ272_000799"
     CDS             10135..12276
                     /gene="pglB"
                     /locus_tag="RJ272_000799"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HDV7381909.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSVIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            12286..13416
                     /gene="pglA"
                     /locus_tag="RJ272_000800"
     CDS             12286..13416
                     /gene="pglA"
                     /locus_tag="RJ272_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7381910.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            13409..14011
                     /gene="pglC"
                     /locus_tag="RJ272_000801"
     CDS             13409..14011
                     /gene="pglC"
                     /locus_tag="RJ272_000801"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HDV7381911.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTGKFNGKN"
     gene            13998..14585
                     /gene="pglD"
                     /locus_tag="RJ272_000802"
     CDS             13998..14585
                     /gene="pglD"
                     /locus_tag="RJ272_000802"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HDV7381912.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECVFLDDLKGMKFES
                     TLPKYDIFIAIGNNEIRKKIYQKILENGFKIVNLIHKSALISPSASIEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFIGIPAKRM"
     gene            14587..>14979
                     /locus_tag="RJ272_000803"
     CDS             14587..>14979
                     /locus_tag="RJ272_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381913.1"
                     /translation="MHFNNNLVVHYIVNPSPLGWIVINLLTICLICYIFPLKNSLKHK
                     KLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLLFFFELENENLKTLWS
                     LQVSVSSVITGMLLLLIYVINLAIVCENG"
BASE COUNT         5036 a         1808 c         2608 g         5527 t
ORIGIN      
        1 acttaatttc tccaagaaat ttttttattt ttgatggtat ctaaataaat ttgatgattg
       61 ctttcgagca tttttttgct attttctttg tgataaatat gataagcaat agctttaaat
      121 tttaagcgtc taaaaatgcc tttattaaat aaaaatctag caacaaattc actatcttct
      181 ctaccccaac caataaaatt ttcattaaaa ccatcaagtt tatcaaaatc agttttaaaa
      241 aaactcatat tgcaacccct aataccttta ataagagtgg tttttttaaa gattttttca
      301 tctttttttg aaagactgta aagcatttta gctaaaaaag aatttttaga acttttaaaa
      361 tcttttttat taaaagctat gcgataatca tctttgttta aaatttcttc gctttctttt
      421 tcatttaaaa ttactcttga accttgtaaa aaaagtcttc tttgtgcaaa ttctaaatgt
      481 tcttttatga aatctttttc caaaatcata tcaccatcaa taattattat atattcacta
      541 tcagcgtttt ttatagtttt gttgcgactt ttactaagcc taaacccttc atcttcttgc
      601 caaatgtgtt ttaaagggca aggaaaattt ttttgatatt cttcaataag ccttgctgta
      661 tcttctttgc taccatcatc tgcgattaaa acttcattgg gtaaaaaggt tagattttta
      721 acactatcaa gcactaactt aaggcgttct ttttgattat aggttgttat tattaaagca
      781 caagtttttg gcttttgctt ttgaagttca tataatttca tatatttaaa aaaagtccct
      841 aaggcattac aaacgctaat tataaaaccc ttataactat acaaaaagcc attttttaaa
      901 aaataatttc taaaaaaagt ccaaaaagct cttaaatttg cttttaaaac accacttttt
      961 ttgtgtatat tttgttttgc ccaaaggctt gagtagtgct gcattttatt aattaagtga
     1021 gaaatatctc taaaagcatg atgctttaat ccatttttaa gatgaatttt tttaacatta
     1081 cttggtaaaa caaggctttc gtgtactaaa ttatcattaa aacgagtgaa atttttatta
     1141 aaaattctta aaacataatc aggccaccaa ccacatgcct ttatccattc gcctttatag
     1201 agatttttac gactaagtgc gatgatatta tcttcttgaa gttctaaatt tttaagctct
     1261 ttaatacact cattttcaag cacttcatca gcatcaatgc ttaaaatcca atcatttttt
     1321 gcataactta aagcaaggtt ttttaaagct ccaaaaccta taaaagcact gtggtaaatg
     1381 tgcaaattag caaaatcttt tttaaattca ttagctatat ttagggtatt atcactactt
     1441 tcattgttaa gtaaaataat ttcatcaaaa tcttttaaag aatttaaaca ttcaagcaag
     1501 gtttgttttg cattttttac aatgataata acacttattt gctttagatt cattttgcat
     1561 ccttgtaaat ttccttatta taacttgcaa agcgtctatg aaaaaaaaag tattcccaag
     1621 gtcttttttt aatcatttct tcgcaacttt gcgcttgata aagtgtcagt tcttctaagc
     1681 ttgcattttg agaatctttt gctttaaaaa actctatgca aaatttacca tcttctttat
     1741 aggcataaac agggatgatc aaagcattgc ttctttgtgc gataaggctt gctcccattt
     1801 gataattcac ttctttgtta aaaaatttta atcttacgct ttcgttttct gcgcagtctt
     1861 gatcggttaa aattcctaaa gttctccctt tttttagagc gcttagcatt tgtcttatgc
     1921 cgcctttttt gtcgataagt tctatgtcaa attgggtgcg actttggctt aaaatttcat
     1981 acataatttc actttttaac tttttcccta ctatagcaat cgcaccatat ttagccgcat
     2041 aagcaaggct taaaatttcc cagtttccat agtgtgcagt tgtgaagata ataggacgat
     2101 ttaaagctag agcgtctata agtaaatttt cattgatgaa atttacttta ttgagaattt
     2161 tttctttggt ggtgttttga ttttgcaaac aatcaattcc aaattgagca aaattttcat
     2221 aaattttcaa agacaattta tcgcgttctt tttgagtgta ttgagggaag cagatttgca
     2281 aatttgtatc gatgattttg cgatgttttt tgttaagata aaaagtgatt cttgctacaa
     2341 ttaaagctaa aaaatgcaag atacactcag gcataaaagt aacaaaaaat ttcaaaatat
     2401 aataaagact aagatatatt ctatcactat ttttcattaa gtaagccttt ggcaagtttg
     2461 aagatatctt cttcttctat acgcgtgata caaaaatcac ttttatcgat atgcttggca
     2521 ttttggattt ttttacctgc atcaatgatt ttattgatat gagtttgaaa agcattgcgg
     2581 tagcttggtg ttgcaccaaa aatcgtaata gatgctttat ttaaagcaaa agccaaatgt
     2641 gttggaccac tatcatttcc tatgataaga ttcatcattt ttgtaaaagc cattagctct
     2701 tcaaggctga attttggtgc taattctata tgtgtttcat caataccact aagatttaaa
     2761 acctctttgg caaattcgta ttcttttaca tttccccaag cgagccaaat ttttgcttgt
     2821 tgaaattcat tgattaaaag tttgcaaagt atagcaagtt tggttttagg atagatttta
     2881 ttttctacac ttgaacccac gtgtatgagt atgttttttt cgtttttgtc gagcttgagt
     2941 ttattgttta agagttgttt taaattttca tctacgctaa aaatatcttg tttaaaggct
     3001 aaatttttga cattaaaatc agtatttaac ataaaggagg taagacttaa gtatcttaca
     3061 aatacatttt cattgtaatc taactcaagt ttttggttgt agaaattatg agcaaaactt
     3121 tctttaagac tatttttatc aaaaccaaaa ttatttctac ttaaaattcg acttacaata
     3181 gcagatttta taagcccttg tagatctatt actacattat agttgttttt tcttgcttta
     3241 agaagaattt ttaggctttt taaaattttt ttgtctttta agggcagggc atagagtttg
     3301 tctattaaag gatggttttt aagtatgcct tcaaattttt catctacaaa ccaatgaatt
     3361 tctatatctt ttttaaaatt tttgataaat tgcaaaacca cggcactttg gataatatca
     3421 ccaagtgctg acaaacgaac aattgctatt ttcattaaaa gcctaatatt ttaaaatttt
     3481 tgctatgatt ttagcgaaat tatttaaaaa aaggttaaaa aatggcaaaa aatgaaggtt
     3541 atatttgtgt ttttgattgt gagagtgtgc cagatgttga gcttatccgc aaaactttag
     3601 gttttgaagg aagtgatttg gaggtaagtt taaaagcact tcagtggcaa aaagaacaaa
     3661 gcgggagtga gtttttgcct ttgccttatc ataaaatcat cagtatttgt gcggttttaa
     3721 gcgataattt tggaaaattt atcaaagtaa ataaaattga tgggcaaaat gaaaaagaaa
     3781 tgattgagaa ttttttcaat tttatagaaa attatgagcc aaaattagtc agttttaatg
     3841 gtaaaaattt tgatatgcct gttcttgttt taagggcttt aaaatacaat ttaaaagcag
     3901 caacttattt agatactcaa agtgataaat ggaataatta taaaacaaga ttttcagaat
     3961 taaaacattg tgatttatta gaatccttag gatctaatgg gcgtggaata aagcttgata
     4021 cactttgctc tatggtgggt ttgccaggaa aatacgatgt gcatggtgat gaggtgatga
     4081 aactttttta tgaagatgaa cttgaaaaaa tccacgaata ttgtgaaagt gatgttttaa
     4141 acacctatat gcttttttta aaatatgaac ttattaaagc taatgttagt gaagaagatt
     4201 atgttgattt tctttcttat atgagagatt ttttgcgttc aaaaaaatca gatcgttctt
     4261 atacagaagt ttttgcaaaa gcttgtgaga gtgaaatttc aaaagttcga tcttaagtat
     4321 ttaagaaaat atattaaaat ttatttttga cattttcaaa aaaaggaatg atgatgaaaa
     4381 ttcttattag cggtggtgca ggttatatag gttctcatac tttaagacaa tttttaaaaa
     4441 cagatcatga aatttgtgtt ttagataatc tttctaaggg ttctaaaatc gcaatagaag
     4501 atttgcaaaa aataagagct tttaaatttt ttgaacaaga tttaagtgat tttcaaggcg
     4561 taaaagcatt gtttgagaga gaaaaatttg acgctattgt gcattttgca gcgagcattg
     4621 aagtttttga aagtatgcaa aatcctttaa aatattatat gaacaacact gttaatacaa
     4681 caaatctcat cgaaacttgt ttgcaaactg gagtgaataa atttatattt tcttcaacgg
     4741 cggccactta tggcgaacca caaactcccg ttgtgagcga aacaagtcct ttagcaccta
     4801 ttaatcctta tgggcgtagt aagcttatga gtgaagaagt tttgcgtgat gcaagtatgg
     4861 caaatcctga atttaagcat tgtattttaa gatattttaa tgttgcaggt gcttgtatgg
     4921 attatacttt aggacaacgc tatccaaaag cgactttgct tataaaagtt gcagctgaat
     4981 gtgccgcagg aaaacgtgat aaacttttca tatttggcga tgattatgat acgaaagatg
     5041 gcacttgcat aagagatttt atccatgtgg atgatatttc aagtgcgcat ttagcggctt
     5101 tggattattt acaagagaat gaaagcaatg tttttaatgt aggttatgga catggtttta
     5161 gcgtaaaaga agtgattgaa gcgatgaaaa aagttagcgg agtggatttt aaagtagaac
     5221 ttgccccacg ccgtgcgggt gatcctagtg tattgatttc tgatgcaagt aaaatcagaa
     5281 atcttacttc ttggcagcct aaatatgatg atttagagct tatttgtaaa tctgcttttg
     5341 attgggaaaa acagtgttaa aaaaactttt ttttatttta agtaaggaag ataaaaattt
     5401 tttatttttc ttgcttgttt tttcagtatt tatttctttt atagaaactt ttgcaatttc
     5461 tttggtaatg ccttttatca ctttggctag tgatttttct tattttgatc gtaataaata
     5521 tttaatcagc ctaaaagaat atcttaatat ccctgttttt gaaatcattg tttattttgg
     5581 agtggggctt attgtttttt atgtgtttag agctttgtta aatgcgtatt attttcatct
     5641 tttggcaaga ttttctaaag ggcgttatca tgcgatcgct tataaggttt tttctaaatt
     5701 tttaaatatt aattatgaaa aatttactca aaaaaatcaa tctgaaattt taaagtccat
     5761 tacaggggaa gtttataatc taagcactat gatttcatca tttttacttt tgatgagtga
     5821 aatttttgta gtacttttgc tttatgcttt aatgcttttg attaattata aaatcacttt
     5881 atttttaagt atttttatgg tgttaaatgc ctttatttta gtgaaaattt taagccctat
     5941 cattaaaaaa gcaggagtaa gacgcgaaga agcgatgaaa aatttctttg aaattttaaa
     6001 tacaaattta aataatttca aatttattaa gcttaaaacc aaagaagatg gagtattaag
     6061 tctttttaaa gcgcaaagtg aagctttttc taaagcaaat attaccaacg aaagcgtagc
     6121 tgcggtgcct cgaatttatc ttgaaggaat aggcttttgc gtacttgttt ttatcgtggt
     6181 atttttggtt ttgaaaaatg aaagtgatat ttcaggtatt ttatccacga tttctatttt
     6241 tgttttagcg ctttatcgct taatgccaag tgcaaatcgt attattacaa gttatcatga
     6301 tttgctttat tatcattctt ctttggatat tatttatcaa aatttaagac aagaagaaga
     6361 aaatttgggc gaggaaaaat taagctttaa tcaagagctt aaaatttgca atcttagctt
     6421 tggttatgag ggaaaaaaat atttatttaa aaatcttaac ttaaatatta aaaaaggcga
     6481 aaaaatcgct tttatagggg agagtggttg tggaaaaagt accttagtag atcttatcat
     6541 aggactttta aaaccaaaag aagggcaaat tttaattgat gagcaagaat taaatgcaaa
     6601 taatacaaaa aattatcgcc aaaaaatagg ctatatcccg caaaatatct atctttttaa
     6661 tgacagtata gctaaaaata tcacttttgg agatgcggtt gatgaagaaa aacttaatag
     6721 ggttatcaaa caagcaaatt tagagcattt tataaaaaat ttacctcaag gagtgcaaac
     6781 aaaagtgggc gatgggggga gtaatttaag cgggggacaa aaacaacgca tagctatagc
     6841 aagagcttta tatttagagc ctgaaatgtt agtgcttgat gaagcaactt ctgcgcttga
     6901 tactcaaagt gaagcaaaaa ttatggatga aatttataaa atttctaaag ataaaaccat
     6961 gattattatc gcacatcgcc tttctacgat aacacaatgt gataaggttt atcgtttaga
     7021 acacggtaag cttaaagagg agaaatgatg aaaataagct ttattatcgc aactttaaat
     7081 tcaggaggtg ctgagcgtgc tttagtaacc ttagctaatg cactttgcaa agagcatgaa
     7141 gtaagtatta ttaaatttca tgcaggagaa tctttttata agcttgaaaa tgaagttaaa
     7201 gttacaagtt tggaacaatt tagatttgac acgctttatc ataaaatcgc aagtcgtttt
     7261 aagaaatttt ttgctttaag aaaggctttg aaagaaagta aggctgatgt ttttatttct
     7321 tttttggata cgactaatat tgcttgtatt gctgcgaaaa tagggcttaa aactccactc
     7381 attataagtg agcatagtaa tgaagcgtat ttaaaaccta aaatttggcg ttttttaaga
     7441 agggtaagct atcctttttg tgatgcttta agtgtgcttg gaagcagtga taaggtgtat
     7501 tatgaaagat ttgtagaaag ggttaagctt ttattaaacc cttgtcattt tagcgatgaa
     7561 atttcttttg attctagttt tgaaaaggaa aatttggttc tttttatagg gcgtttagat
     7621 cacaacaaaa accctgtaat gtttttaaaa gctatagcgc atttggataa aaatttacaa
     7681 gaaaattata aatttgttat agcaggagat ggacagttaa gacaagaact tgaatacaag
     7741 gtaaaatctt taggaataaa agttgatttt ttaggacgcg ttgaaaatgt caaggctctt
     7801 tatgaaaaag caaaagtgct ttgcctttgt tcttttgtag agggtttgcc aacggtttta
     7861 attgaaagtt tgtattttga ggtttgtaga atttcaagtt cttattataa tggtgctaag
     7921 gatttaatca aagataatca tgatgggctt ttggtagatt gtgatgatga aatagcactt
     7981 gctaaaaaac ttgaacttgt tttaaatgat gaaaatttta gaaaagaact tgtaaataat
     8041 gccaaacaaa ggtgtaaaga ctttgaaatt tctcatatca aagaagaatg gcttaagctt
     8101 atagccgagg ttaaaaatgc ctaaactttc tgttatagta ccaactttta atcgtcaagt
     8161 tttgttagaa aaggctatta aaagcataca aaatcaagat tttaaagatt tagaaattat
     8221 tgtaagcgat gataattcta gcgatgatac taaaagtgtg gtgcaaaatt tacaaaaaga
     8281 tgatgatcgc attaagtatt ttttaaatca aaattacaaa caaggtccaa atggcaataa
     8341 aaacaatggc ttagatcaag caagtggcga gtttgtaact tttttagatg atgatgatga
     8401 gcttttatcc ggggctttaa gtaccttgat gcaaaaagca aatgagggtt atgctcatgt
     8461 ttttggaaat tgtttgatag aaaaagaagg aaatttaagc aaggaattta gcggcaaggg
     8521 cttggaaaaa gatagtgaaa tttctaaaaa agatttttta atggctaaat ttagcggaga
     8581 gtttttttct gtttttaaaa aatccctact tgaaaataag cgttttaatg aagaatttta
     8641 tggcaatgaa gccacgcttt gggtaaattt atacaaagaa aaaagttttt atatccataa
     8701 ggcttttagg atttatagaa tttttaggca agatagcgtg actttagggg cgagtaaaaa
     8761 tgcttatagg gtgtatttgg gatatttaga gcttgctaaa attttagaaa atgaacttag
     8821 aatgagtaag gataaagatt ataaaaaaac ttgtgcgagt tattataaaa tggcagctta
     8881 ttatgcaaaa cttgcaaaaa attataaagc cctttataaa tgtttgttta aaagcctaag
     8941 tataaaaatc aacgctcctg ctttgatatt actcatttta agtataattc caaataatat
     9001 gattgaaaaa ttatcaaaaa ttcgggtggc tttatgcaaa aattaggcat ttttatttat
     9061 tctttaggaa gtggtggtgc tgaaagagtt gtggcgactt tattgcctat tttaagtttg
     9121 aaatttgaag tgcatttgat cttgatgaat gataaaattt cttatgaaat tccagagtgt
     9181 caaattcatt ttttagaatg ttcaaaacct agtgaaaatc ctattttgaa atttttaaaa
     9241 ctaccttttt tggctttaaa atacaaaaaa ctttgcagaa atttaggtat tgatacagaa
     9301 tttgtttttt taaatcgacc taattatata gctttaatgg caagaatgtt tggaaacaaa
     9361 actcgccttg tgatcaatga atgcactacg ccaagtgtga tgtatatgaa aaataatttt
     9421 aattctttgg taaataaatt tttaatttct ttgctttacc caaaagctga tttaatcttg
     9481 cctaattcta agggaaattt agaagattta gtgcaaaatt ttagtataag tccaaaaaaa
     9541 tgtgaaattt tatacaatgc catcgattta gaaaacatag ggcaaaaagc ccttgaagac
     9601 atagctttaa aagataaatt tattttaagt gtaggcaggc ttgataaagg taaaaatcat
     9661 gctttattaa ttcgtgctta tgcgagattg aaaacagatt taaagcttgt gattttaggt
     9721 gaaggtgtgc ttaaggatga gcttttagct ttgattaaag aattaaattt ggaagaaaag
     9781 gttttgcttt taggatttga taataatcct tataaataca tggctaaatg cgaatttttt
     9841 gcttttgctt ctgtgtttga aggtttttca aatgttttaa tcgaaagttt ggcttgttct
     9901 tgtgcggtgg tttgcactga tcataaaagt ggtgcaagag agctttttgg cgatgatgaa
     9961 tttggacttt tagtagaagt agataatgaa aactctatgt ttcagggttt aaaaactatg
    10021 cttgaagacg ataaattaag aaaagcgtat aaaaacaaag ctaaaactag ggctaaagcc
    10081 tttgataaag taaaaattgc acgcgatgct ttgaaatatt tattaggata aaagatgttg
    10141 aaaaaagagt atttaaaaaa cccttattta gttttgtttg cgatgattgt attagcttat
    10201 gtttttagtg tattttgcag gttttattgg gtttggtggg caagtgagtt taacgagtat
    10261 tttttcaata atcaattaat gatcatttca aacgatggct atgcttttgc tgagggcgca
    10321 agagatatga tagcaggttt tcatcagcct aatgatttga gttattatgg atcttcttta
    10381 tctactctta cttattggct ttataaaatc acaccttttt cttttgaaag tatcatttta
    10441 tatatgagta cttttttatc ttctttggtg gtgattccta ttattttact agctaatgaa
    10501 tacaaacgcc ctttaatggg ctttgtagct gctcttttag caagtgtagc aaacagttat
    10561 tataatcgca ctatgagtgg gtattatgat acggatatgc tggtaattgt tttacctatg
    10621 tttattttat tttttatggt aagaatgatt ttaaaaaaag actttttttc attgattgcc
    10681 ttgccattat ttataggaat ttatctttgg tggtatcctt caagttatac tttaaatgta
    10741 gctttaattg gacttttttt aatttataca cttatttttc atagaaaaga aaagattttt
    10801 tatatagctg tgattttgtc ttctcttact ctttcaaata tagcatggtt ttatcaaagt
    10861 gtcattatag taatactttt tgctttattt gctttagagc aaaaacgctt aaattttatg
    10921 attataggaa ttttaggtag tgcaactttg atatttttga ttttaagcgg tggggttgat
    10981 cccatacttt atcagcttaa attttatatt tttagaagtg atgaaagtgc gaatttaaca
    11041 cagggcttta tgtattttaa tgttaatcaa accatacaag aagttgaaaa tgtagatttt
    11101 agcgaattta tgcgaagaat tagtggtagt gaaattgttt tcttgttttc tttgtttggt
    11161 tttgtatggc ttttgagaaa acataaaagt atgattatgg ctttacctat attggtgctt
    11221 gggtttttag ccttaaaagg aggacttaga tttaccattt attctgtacc tgtaatggct
    11281 ttaggatttg gttttttatt gagcgagttt aaggctatat tggttaaaaa atatagccaa
    11341 ttaacttcaa atgtttgtat tgtttttgca actattttga ctttggctcc agtatttatc
    11401 catatttaca actataaagc gccaacagtt ttttctcaaa atgaagcatc attattaaat
    11461 caattaaaaa atatagccaa tagagaagat tatgtggtaa cttggtggga ttatggttat
    11521 cctgtgcgtt attatagcga tgtgaaaact ttagtagatg gtggaaagca tttaggtaag
    11581 gataattttt tcccttcttt ttctttaagt aaagatgaac aagctgcagc taatatggca
    11641 agacttagtg tagaatatac agaaaaaagc ttttatgctc cgcaaaatga tattttaaaa
    11701 tcagacattt tacaagccat gatgaaagat tataatcaaa gcaatgtgga tttatttcta
    11761 gcttcattat caaaacctga ttttaaaatc gatacaccaa aaactcgtga tatttatctt
    11821 tatatgcccg ctagaatgtc tttgattttt tctacggtgg ctagtttttc ttttattaat
    11881 ttagatacag gagttttgga taaacctttt acctttagca cagcttatcc acttgatgtt
    11941 aaaaatggag aaatttatct tagcaacgga gtggttttaa gcgatgattt tagaagtttt
    12001 aaaataggcg ataatgtggt ttctgtaaat agtatcgtag agattaattc tattaaacaa
    12061 ggtgaataca aaatcactcc aattgatgat aaggctcagt tttatatttt ttatttaaag
    12121 gatagtgcta ttccttacgc acaatttatt ttaatggata aaaccatgtt taatagtgct
    12181 tatgtgcaaa tgtttttttt gggaaattat gataagaatt tatttgactt ggtgattaat
    12241 tctagagatg ctaaagtttt taaacttaaa atttaagggt tgaaaatgag aataggattt
    12301 ttatcacatg caggagcgag tatttatcat tttagaatgc ctattataaa agcgttaaaa
    12361 gatagaaaag acgaagtttt tgttatagtg ccgcaagatg aatacacgca aaaacttaga
    12421 gatcttggct taaaagtaat tgtttatgag ttttcaagag ctagtttaaa tccttttgtg
    12481 gttttaaaga atttttttta tcttgctaag gttttgaaaa atttaaatct tgattttatt
    12541 caaagtgcgg cacacaaaag caatactttt ggaattttag cagcaaaatg ggcaaaaatt
    12601 ccttatcgtt ttgccttagt agaaggcttg ggatcttttt atatagatca aggttttaag
    12661 gcaaatttag tgcgttttgt tattaatagt ctttataaat taagttttaa atttgcacac
    12721 caatttattt ttgtcaatga aagtaatgct gagtttatgc ggaatttagg acttaaagaa
    12781 aataaaattt gcgtgataaa atctgtaggg atcaatttaa aaaaattttt tcctatttat
    12841 gtagaatcgg aaaaaaaaga gcttttttgg aaaaatttaa acatagataa aaaacccatt
    12901 gtacttatga tagcaagagc tttatggcat aaaggtgtaa aagaatttta tgaaagtgct
    12961 actatgctaa aagacaaagc aaattttgtt ttagttggtg gaagagatga aaatccttct
    13021 tgtgcgagtt tggagttttt aaactctggc gcagtgcatt atttgggtgc tagaagtgat
    13081 atcgtagaac ttttgcaaaa ttgtgatatt tttgttttgc caagctataa agaaggcttt
    13141 cctgtaagtg ttttggaggc aaaagcttgt ggtaaggcta tagtggtgag cgattgtgaa
    13201 ggttgtgtag aggctatttc taatgcttat gatggacttt gggcaaaaac aaaaaatgct
    13261 aaggatttaa gcgaaaaaat ttcactttta ttagaagatg aaaaattaag attaaattta
    13321 gctaaaaatg ccgcccaaga tgctttacaa tacgatgaaa ataatatcgc acagcgttat
    13381 ttaaaacttt atgatagggt aattaagaat gtatgaaaaa gtttttaaaa gaatttttga
    13441 ttttatttta gctttagtac ttttagtgct tttttctccg gtgattttaa tcactgcttt
    13501 acttttaaaa atcactcaag gaagtgtgat ttttacccaa aatcgtcccg ggttagatga
    13561 aaaaattttt aaaatttata aatttaaaac catgagcgat gaaagagatg aaaagggtga
    13621 gttattaagt gatgaattgc gtttgaaagc ttttggaaaa atcgttagaa gcttaagttt
    13681 ggatgagctt ttgcaacttt ttaatgtttt aaaaggggat atgagttttg tgggacctag
    13741 gcctcttttg gttgagtatt tgcctcttta caataaagag caaaaattgc gtcataaagt
    13801 gcgtccaggt ataacaggat gggcgcaggt aaatggtaga aatgctattt cttggcagaa
    13861 aaaatttgaa cttgatgtgt attatgtgaa aaatatttct tttttacttg atttaaaaat
    13921 catgttttta acagccttaa aggttttaaa acgaagtggg gtaagcaaag aaggacatgt
    13981 tacaacgggg aaatttaatg gcaagaactg aaaaaattta tatttatggt gctagtggtc
    14041 atgggcttgt ttgtgaagat gtggctaaaa atatgggtta taaagaatgt gtttttttag
    14101 atgatcttaa aggaatgaaa tttgaaagca ccttgccaaa atatgatatt tttatagcca
    14161 taggaaacaa tgaaattcga aaaaagattt atcaaaaaat tttagaaaat ggctttaaaa
    14221 tcgttaatct tatccataaa agcgcactta taagtcctag tgcaagtata gaagaaaatg
    14281 caggaatttt aatcatgcct tacgtggtaa ttaatgctaa agccaaaata gaaaaaggcg
    14341 tgattttgaa tacttcaagt gtgattgaac atgaatgtgt gataggggaa ttttctcatg
    14401 tgagtgtagg ggctaaatgc gcaggtaatg taaaaattgg taaaaattgt tttttaggga
    14461 ttaattcttg tgttttgcct aatttaagct tagcagatga tagtatttta ggtggtggag
    14521 caactttagt taaaaatcaa gatgaaaaag gtgtttttat aggaatacct gcaaaaagga
    14581 tgtaaattgc attttaataa caatcttgtt gttcactata tagtaaatcc ttcgcctttg
    14641 gggtggattg tcattaattt actaaccata tgtctaatat gctacatatt tcctttgaaa
    14701 aattctttaa aacacaaaaa actttttagt cttaaagcaa atgtaaattc taaaaatagt
    14761 aggattataa aatatacagg tattgctgct tttttgggtg gattaatagg aatttggtat
    14821 aattttgaag gtttttatca acttcttttt ttctttgaat tagaaaatga aaatttaaaa
    14881 acactttgga gtttgcaagt atcagtttct tctgtgataa caggtatgtt attattgttg
    14941 atatatgtta taaatttagc aatagtttgt gaaaatgga
//
LOCUS       DAPIWV010000037        14487 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.038, whole genome shotgun sequence.
ACCESSION   DAPIWV010000037 DAPIWV010000000
VERSION     DAPIWV010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14487
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.038"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(40..234)
                     /locus_tag="RJ272_000804"
     CDS             complement(40..234)
                     /locus_tag="RJ272_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDV7381914.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            374..1021
                     /gene="rpe"
                     /locus_tag="RJ272_000805"
     CDS             374..1021
                     /gene="rpe"
                     /locus_tag="RJ272_000805"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDV7381915.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            1018..1779
                     /locus_tag="RJ272_000806"
     CDS             1018..1779
                     /locus_tag="RJ272_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7381916.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      1800..1904
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1961..3253
                     /gene="thiC"
                     /locus_tag="RJ272_000807"
     CDS             1961..3253
                     /gene="thiC"
                     /locus_tag="RJ272_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HDV7381917.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVIDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3245..3763)
                     /locus_tag="RJ272_000808"
     CDS             complement(3245..3763)
                     /locus_tag="RJ272_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381918.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3753..4280)
                     /locus_tag="RJ272_000809"
     CDS             complement(3753..4280)
                     /locus_tag="RJ272_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381919.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDNEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4277..5236)
                     /locus_tag="RJ272_000810"
     CDS             complement(4277..5236)
                     /locus_tag="RJ272_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HDV7381920.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNNDTEVTLDNFNEALNNKF
                     DLLDQENNLETLNNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            complement(5238..5867)
                     /locus_tag="RJ272_000811"
     CDS             complement(5238..5867)
                     /locus_tag="RJ272_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HDV7381921.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            complement(5851..7152)
                     /gene="miaB"
                     /locus_tag="RJ272_000812"
     CDS             complement(5851..7152)
                     /gene="miaB"
                     /locus_tag="RJ272_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDV7381922.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(7149..7391)
                     /locus_tag="RJ272_000813"
     CDS             complement(7149..7391)
                     /locus_tag="RJ272_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381923.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            7519..8607
                     /gene="nusA"
                     /locus_tag="RJ272_000814"
     CDS             7519..8607
                     /gene="nusA"
                     /locus_tag="RJ272_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDV7381924.1"
                     /translation="MEKIADIIESIANEKKLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(8623..9810)
                     /locus_tag="RJ272_000815"
     CDS             complement(8623..9810)
                     /locus_tag="RJ272_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7381925.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            9884..10930
                     /locus_tag="RJ272_000816"
     CDS             9884..10930
                     /locus_tag="RJ272_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HDV7381926.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            10930..12150
                     /locus_tag="RJ272_000817"
     CDS             10930..12150
                     /locus_tag="RJ272_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7381927.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELGK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            12140..13963
                     /gene="recG"
                     /locus_tag="RJ272_000818"
     CDS             12140..13963
                     /gene="recG"
                     /locus_tag="RJ272_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDV7381928.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSACYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
     gene            complement(13960..14343)
                     /gene="ctb"
                     /locus_tag="RJ272_000819"
     CDS             complement(13960..14343)
                     /gene="ctb"
                     /locus_tag="RJ272_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HDV7381929.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
BASE COUNT         5100 a         1944 c         2408 g         5035 t
ORIGIN      
        1 aaattggaaa ttttaaaatt gaggaataaa tcctcaaaat tatttagaat tttgtttttt
       61 tagagttctt agagtagaag ctgcaattct catttttctc gtggtgccat cttctaaagt
      121 tacacgaact gttctgagat taggtaaaaa gcgtcttttt gttttattgt tagcatggct
      181 gacattatta cccaccattg gacccttgcc tgtgatttga catactcttg ccattttttt
      241 gtccttatga aaatttttaa atggagattt tatcaaaatt aagcttaaaa tattccataa
      301 tttatagttt ttttaatata taagtcgata aaatattatt tatcacattt atatatagtt
      361 taaggttttg atcatgtatg tagctccaag tttattgtct gcaaattttt tgaaattaga
      421 agaagaagtt aaagctattg aagctgcagg tgcggatctt ttacacattg atgtaatgga
      481 tggacacttt gttccaaatt tgactttcgg accttgcgtg atcgaaaaga tttcaactat
      541 tagtaagttg ccattagatg tgcatttaat ggttaaagat gtaagtaaat ttgtagatct
      601 ttttatctct ttaaaaccga aatttatctc ttttcatatg gaaagcgaag ttcatcctat
      661 aaggctttgt gaatatataa gaagtcaagg aatccatcct gctattgttt taaatccaca
      721 tactcctatt gattctatta aacacatgct agaatttgta gatatggtgc ttttaatgag
      781 tgttaatcct ggatttggtg ggcaaaaatt tttacctttg atacatgaaa aaatcaaaga
      841 attgcgccaa atgattgata aaaaaaatgc taaagttttt atagaggttg atggtggtgt
      901 taatggttta aatgctagtg atttagaaga atctggagct gatattttgg tggctggaag
      961 ttatattttt tcttccaatg attataaaac tgcaatttca tctttaaagc ttgaattttg
     1021 agtttacagc aaattgatca gattatttct atattaaata agcaaagcaa gccttatgat
     1081 tgggtgatgc aagagtttgc caaagttgaa gaattaaaaa attttgattt agatttagaa
     1141 acttttgagc ttttggggtt aggtttaact ttaaataaag ataatatttt tactcttaaa
     1201 acacgcacaa caaaaattaa agatgaaatt ttttgcatag tggatataga aagtactggt
     1261 ggggtgagca agggggaaat tttagaaatt ggagcggtaa aaattcaaaa ttctaaagaa
     1321 attggacgct ttcaaagttt tgttaaagta aaagaaattc caaaaaatat aactgaactt
     1381 acgggtatta cttatgagat ggtggaaaat gctccaagtt tagcaaaggt tttaagtgat
     1441 tttaggcttt ttttaaaaga cagtattttt gtagcgcata atgtgcgttt tgattatagt
     1501 tttatttcta aggctttaaa tgagtgtggt tttggcattt tgcttaatcg tcgtatttgc
     1561 actatagaat ttgcacaatg ttgtatagaa agtccaaaat ataaactaga ggttttgaaa
     1621 gaatttcttg gcgtggaaaa tatgcatcat agagccttag atgatgcttt ggcagctgct
     1681 gaaattttta aatattgcct tggaaaactt ccttatcata taaaaactac agaagaactt
     1741 ataaatttta caaaaactgc acgtataaag caaaaataaa tatttaaagt gtataataaa
     1801 acataaatga cgggagcttg tgtaacaggc tgagagtaag ctaaaagctt agaccgaacc
     1861 ggatctggat aatgccagcg tcgggaagat ttataaattt caatacttta aaaatttata
     1921 ctcacccttc atttatccaa attttttaaa ggataaattt atgaaaactc aaatgaatta
     1981 tgcgaaagaa ggtattttta ctaaagaaat gcagattgtt gcacaaaaag aaaatttaag
     2041 taaagatttt ttgcttgaaa atattgcttg cggtaaaatt attatccctg caaatattaa
     2101 tcataaaagt cttgatccaa atggtatagg ttttggactg cgtactaagg ttaatgtaaa
     2161 tttaggagtt tcaaatgatt gtgttgatta tagcgaggaa atgaaaaaag tagagcttgc
     2221 tcataaattt gatatagaag cgattatgga cttaagcaat tatggcaaaa caagtcgttt
     2281 tagagacgag cttgttaatg tttcaaaagc tatgatagga acagttcctg tatatgatgc
     2341 ggtaggattt ttagaaaaag atttaaagca aattaatgcc aaagactttt tagatgttgt
     2401 atatcatcat gctaaaagtg gggttgattt tatgacaatt catgcaggta ttaattctcg
     2461 cgcagcgcat atttttaaac aaagtaaaag acttacaaat atagtttcaa gaggaggctc
     2521 tgtactttat gcttggatga tgatgaaaga tgctgaaaat cctttttttg agtattatga
     2581 tgatttgctt gacatttgtt taaaatacga tgtaacttta tctttgggcg atgctttgcg
     2641 tcctggctct actcacgatg caagtgatgg ggcacaaatt tcagaactta tagaattatc
     2701 actccttact caaagggctt gggatgttgg gattcaagta atgatagaag gtccagggca
     2761 tatggctatt aatgaaatag aggcaaatat gcaattagaa aagcgtttat gtaaaggagc
     2821 gcctttttat gtcttaggac ctttggtaat agatattggc gcagggtatg atcatattag
     2881 tggtgctatt ggaggagctg tggctgcagc tagcggtgct gatatgctgt gttatgtaac
     2941 acctgctgaa cacttaagac ttccaaattt agaagatgtt agagagggta tagttgcgac
     3001 taaaattgca gctcatgcag gagatatagc taaacttcca aaagaaagag caagagatga
     3061 tgagatgagt aaggctaggc aagagataga ttgggagaaa atgtttaaac ttgctattga
     3121 tggagaaaag gccaaaaaaa tgtttaatga gcgtcgtcct gatgatttaa actcatgttc
     3181 tatgtgtgga aaaatgtgtg caatgaatac tatgaatcaa attttaaaag gcgaagatgt
     3241 gagtttagct tgaataaact ttgagagtaa gatctataga gataccttgc tctcctgctt
     3301 taagattaag tggataatca agcttgatta agttattata gttttttaga gcatcaataa
     3361 aatcataaag ccttctagga ttgttcattg tcgctttaat ggctaagcgg ttttttagat
     3421 atttttcttg tttttcgggc ttagtttctt gaatttttac attttgaaaa tatttttgta
     3481 aaaaaatatc aaaatttcct atattaaaat tttgctcaaa ttgctctaaa cttttgttgt
     3541 tttcgcttct tagagttgat attttatctt cactaaagtc aaattttaat ttagcggctt
     3601 ttaagatagc aagttgtgag ttttctctaa gatttgcttg tttataattt tttaatgtcg
     3661 gtaaaagtaa aaataagatc aaggctgtgc aaacgcttat aaaacttaac gcgcaaatga
     3721 taagctttaa taaatcaatt tcttctagac ttttatcttt catctgcaac tcctggaatt
     3781 tgtttactaa tactaacaaa acgataccac ccattatcta agcgataata ggttgtatag
     3841 ctttgatcaa agatgctttt taaaggggtt tctaaaagta gagtaaacat ttctcttgta
     3901 ggagtgactc cgataagttt taaggaatat tcgtcttgtt caacactttc aagagtaata
     3961 ttatcagttt ttacaataat atcaaataga tttcttaagc tttctttaac aatttgattt
     4021 tgagtgttaa aatttttcgc tatttggctt tgatcaaata aaatttcata aagcatttca
     4081 ttttgcttag tttgattttg aagcactata acttgttgtt tttcattatc gatagagcta
     4141 ttgattaatg caatttttat tgtatatgta aaatatacta gcaagataaa taatatacta
     4201 aaaccaaaaa gtcctagcca aattttatca aagagtgtga aaataggttt ttttcttggc
     4261 tgtatgaagc tataagtcat ttaagctcct tttgcatcaa ttctatcata agatctaagg
     4321 tgttgatttg tttcgttttt atctctaaaa aagtttcact ttctaaaaaa tcaatagcac
     4381 ttatgttaat atctgattca ctatataata aaataccatt gataaatacc ccagcatatt
     4441 tatcatcatt ataaaatttt tcaatgctcg taataatata acggcatagt tccatatcat
     4501 tgctaaattg atttaattca tcaagattaa aattatcatt attattcaaa gtttcaagat
     4561 tattttcttg atcaagtaga tcaaatttat tatttaaggc ttcattgaag ttatctaggg
     4621 taacttcagt atcattgttg ttgttttcaa tttcttgatt atcttctgat ggaagttcaa
     4681 gctctaaacc taattcttgc tcaaatattt taaaatcacc gtataaaata gtattgcctt
     4741 tagcaacaat aattgccaaa agatgtcctt gcttaaatcc ataaagtaaa atttgatcat
     4801 caggctgttt ttctttttgt atattgtagt aaagaagagc aaaaggggaa tataaaaaat
     4861 ctaaacctct atattcttca aaaagctcgc tataatattc cacatgttcg gtagccgtat
     4921 aaacaagggc attattaaac aaaatatgct gtaagctgat ttttcctata ttaaagtgct
     4981 cacaatcttg aatatttgta ctaggtatta atccttgttc tttggcatct aaaaataaag
     5041 cagtgtggta aaataagaaa tgcttgctta aattttttat gtattctagt aaattttcgc
     5101 ttttatcaaa agttttttca ttgctactga ttagtttatt tcctctataa atagaagctt
     5161 ttacaatatt ttttttatct tctaaaataa tactaataaa aagttgtgga aatatttttt
     5221 taagtaaaaa taacatttca ttccttaaat tgatcagcta agctaatttt atcaaattgt
     5281 ttcattagaa attctttagc tttttcttta tctaaagata aaatatccaa aggttcactt
     5341 agactataag taatcttact aaaaggtttt ggcaagatca tcttatccca acttttaaat
     5401 ttccaaaaac gatttgcttc atagtttaaa attcttatct ttagttcttt tttttgagcc
     5461 aaaatgatag aaccatctga aatactatga taaggccctc gtggaccatc gggcgtgata
     5521 actatatcgt cattttgttc taaaacttta aatgcagctc taagtgcact gctagcaccc
     5581 cttgaagtgc ttcctcttac agtatcaaga ccgaaaagct tgatgatttt tgcaatttgt
     5641 tctccatctt tatggtggga gatcatgaca taggcttttt tatttttttg tctataatgt
     5701 ctaaacgcaa aaggcatgag tgctaatttt ccatgccaaa aaagtatcac accagcttta
     5761 cggtcaactt tttcaccttt atagtgcttt ttacagctta aaaaaataag ccattgcaag
     5821 atgaaaatta tatatgttaa gcaatggatt ttaaacgatt tccccatata aaaccatacg
     5881 ctttgcatta gttattttta cttctttaaa ttgccctaaa agttcttcgc taccttcaac
     5941 ttgaactaaa aaattattat ctgttcttcc agcaatgcta ttgcctgctc ttaattcttc
     6001 aaataaaact ttaaaagttt tattttcttg tttttttaca atttcatcta aaatttcact
     6061 atgacgattt tgtaaggtgc taagtcttct tgaagctgtt tcttcatcga tttgattagg
     6121 catggttgcg gcttttgtta aagggcgttt ggagtattta aaagaaaaaa tttgttcaaa
     6181 acgcactttt tccaaaacat ccatagtttc ttcaaaatct ttttcacttt cccctggaaa
     6241 agctacaata atgtctgtag aaatgctaac atttggacaa agttctctaa gttttaaagc
     6301 tctatttaaa taccattctt tagtatagcc acgcttcata gcttttaaaa tttcacttga
     6361 gccgctttgt aaaggcatgt gcatggattt gcaaactttt ggattattgg caaaaacttc
     6421 taaaaattta tcatccatgt gcaaaggatg tggacttgta aagcgaatgc gttccaaacc
     6481 ttctatagtg ctaagttctt ctaaaagatc tgaaaagtcc atttttttat gttcgtttct
     6541 aaatcttttg ccatagttat tgacattttg tcctagcaag aaaatctctt tagcgccttt
     6601 ttcaatagct ttttgagctt ctttgtagat gatgttaaaa ggtatggaaa tttcatctcc
     6661 tctagtatgt ggcactatac aataagtgca gtgtttgtca caacctatgg agatattaat
     6721 ataggattta taaatactat ttctaaaatc tgcaaaagca aattcacttt catcatagtc
     6781 tatgtccacg cccataaatt ttggagtttt tatagcttga gtgattttgg aaatatttct
     6841 tgctcctaga acaaaatcca cataaggagc acgtttgaaa atttcatttc ctaaatgtga
     6901 tgcagtacat ccacaaactc ctattttagc accttctttt ttaacttttt caaaaccacc
     6961 tacttctgag aaaagtttat gcacaggttt ttcacgcact gaacaggtat tgataagaat
     7021 aagatctgct tctttgatat cttctgttag tgcgtaattt tctttttgtg ttaattctgc
     7081 gatcatatgc tcagaatctc tgacattcat cgcacaacct aaagtttgga taaaaagttt
     7141 tttagcactc aaagaatatg tacctcatac ataaaatcat tatcatcaag tccgtatttt
     7201 acggttctat gataaatgct tactcctttt ttttcaaaat gatttacaag ggcaatgagt
     7261 tgtttgtgtg tattatcttt atcaaaataa aaaaactttt gtccttcttt ttctatagcc
     7321 tcttcgattt tttctaggct aatattttta ggtttttcat taatcaaagt tcttgccaat
     7381 tttaattcca tagctaaatc cttaagaatt ttcattttaa tctataattt tagcaaattt
     7441 tacttttaat taaacttatt aaggatataa tttttatcta cattatttaa atttcccaca
     7501 aaaaaggttt tataaaatat ggaaaagata gcagatatta tcgaatctat tgctaatgaa
     7561 aaaaaattaa acttagagaa tgtaagagaa aaggtagcta ccgctttaat caatactgca
     7621 aaaagaattt atggacaaga atatgagttt tttgtggatc ctaaaaattt aaatctttat
     7681 caaaaaatta ccatagtagc agataatgac gagagattgc aaaataaaag tgagagtttt
     7741 atcgcgttaa gtaaggcaaa atcagaagct ccagatgttg aaataggaga tgaattaacc
     7801 tatgaatgtt ctttggaaaa tttaggaaga actgcggtaa ataccttgca taaagaactt
     7861 gaatatcata tacaaaaatt attagaacaa actatttttg aaaagtataa aaacaaagta
     7921 gggcaaatgg tttttggtac agttgttaga gtggataatg aagaaaatac ttttattgaa
     7981 atagatgaat taagagcttt tttaccgaga aaaaatcgca ttaaagggga aaagtttaaa
     8041 ataggtgatg tggtaaaagc tgtgatacgc cgtgtttata cagataaggg tattaaaatc
     8101 gagcttagtc gtacaagtcc taaattttta gaatgtttac ttgaagctga ggttccagaa
     8161 atcaaagatg gttatgtcaa tattatagga tgtgctagaa ttccaggtga aagagcaaaa
     8221 atcattcttc aggccaatgg aacaaatatc gatcctgtag gagctacagt aggtgttaaa
     8281 ggtgtaagaa ttaatgcggt aagcaaagag cttcataatg aaaatattga ttgtatagaa
     8341 tttacaaatg agagtgaaat tttaatttct cgtgccttgg ctcctgctat tgtaaattct
     8401 gtaaaaattg aagataaaaa agctattgta agtttaaata gcgaacaaaa aagcaaagct
     8461 ataggaaaaa atggtattaa tattcgcctt gcttctatgt taagtggtta tgaaatagag
     8521 ctcaatgaat taagctcatc gcagctaaat aatgccatca gcaatgaaga agcaatgaaa
     8581 aatcttcaag atttgtttaa aatttaaaat atttgtgaat tttcacaaat attttttata
     8641 aaaccacttc caataaaatg ccgcaaagat aaaaatcata cccaataagc ctgtaattag
     8701 ttctaaactc aagcctattt caaataaaaa gcccataagc attgaaataa tagcgctaaa
     8761 actaagataa atcatatctg tataagcgat cactctacca tgatattctt tgtcggcatt
     8821 tttttgtatc atagtgtagg tgtaagccca aagcgctgag gtaaaaaaac ctgcaccgat
     8881 taaacctaaa aaagaaatat aaaaattaaa ttgagttaaa gcccaaagta taatacccaa
     8941 gccttgacca agatacatgt aaaataaatt tttatcatta ataaatttgc ttaaaaccat
     9001 aggtcctata gctaaagaac aagcacgtac tgcatttaaa aaccctatta ctaaagcagc
     9061 agataaaact tctttatatt gatgttgcgc taaaagcgta accaaggttt cataagcagt
     9121 taaacctata aaagcgtgaa gcaagataag atgaaaaatt atcttattgt ttaaaacata
     9181 gaaaaatcct tcttttatca tggtaaaaaa gcgactttgt gttttttgat gaaaatcagg
     9241 aatgcttaat cttactaaaa aagaaatgcc tatgagtata agtatacagt caaatagaaa
     9301 agcggtttta actcctagaa aataaataaa aattcccgca cttgccatac ctgctgtata
     9361 agaaatcgcc caaatgacac tgtgcatttc attagcgagt ttaagttctt gaggagttaa
     9421 aattttggcc aataaactca tttcagcttg aaaataaatc gaagcaacac aaagtcttat
     9481 gaaaattaaa ataaataaaa gccaaagcat actaagactt gtgacaaaaa taagacaaaa
     9541 aatagaaatt aattctatgc taatcatact gagtaaaagt tttttaggtt tatttttctc
     9601 tactatgacg ccattaatag gagcaagtaa aactccaggt aaaaaagcaa gcatagcact
     9661 tgtagctgtt gcccaagtag gagcattaag ttcgactaaa agggtaaaaa ctcccgtttg
     9721 agaaaaccat gctccaaaat atactataaa ctgaaccgaa gctaatattc tgatattttt
     9781 attatttttt aatagttcaa tgtaattcat aagcgaaact atagcataat ttatatttta
     9841 aatgctataa ttattttaat tatgtaaaaa acaaggaaaa attttgaaaa gactggataa
     9901 aaaagaagct ttagatttat tacaccatgc aagtttaaca gaacttggag aaatggctta
     9961 taaaagaaaa ttagaacttc atcctgaaaa aatcaccact tttgttgtgg atagaaatat
    10021 taattatacc aatgtttgtt gtattgattg ttctttttgc gctttttatc gccatcataa
    10081 agaagatgat gcttatattt taagctttga agagataggc aaaaagatag aagagcttga
    10141 agctatcggg ggaacacaaa ttctttttca aggcggggtg catccaaaat taaaaataga
    10201 atggtatgaa gaattagttt cttggataaa agaacattat ccaaatatca ctgtgcatgg
    10261 tttttcagca gttgagatcg cttatattgc aaaagcatct aaaatttcaa tcactgaagt
    10321 gttaaaaaga ttgcaagcta aaggtttatt ttctatacca ggagcaggtg ctgaggtgct
    10381 aagcgatagg gtgcgtgata ttatcgcacc caataaatgt gatacagcta cttggttaga
    10441 agtacatcgc caagctcata aaattggtat gaaaagtaca gctactatga tgtttggaac
    10501 ggttgaaaat gatgaagaaa tcatcgatca ttttgagcat ttgagaaaat tacaagatga
    10561 aacaggggga tttagagctt ttattttatg gagctttcaa agtgataata ctgctttaat
    10621 ccaaaaacat ccagagatta tgaaacaaag ttctaacaaa tatttaagac ttttagcttt
    10681 agtaagactt tatttagata attttaaaaa tttacaaagt tcttgggtaa ctcaaggctc
    10741 gcttataggt caacttgctt taaaatttgg ggccaatgat ttaggctcaa ctatgatgga
    10801 agaaaatgta gtaagtgctg caggagcaag ttatagaatg aatcaagatg agatgataag
    10861 gctgattaga agtttaggcg aaaatccagc taaacgcaat accgcttatg aaattttaga
    10921 aaggttttaa tgcagtattt agagagtagg ggtattaaaa tcccttttat ttttgaaaaa
    10981 aattctgatt ttcctattgt tgttttaaag cttgttttta gaaattgtgc tagaagttat
    11041 gatgaaatag caggcttagc taagatgttt tcacgtattt taaatgaagg cgtggatgat
    11101 aaatttttta aggatttaga atttagagcg ataaatttag aggcaagtag tggttttgaa
    11161 agtttggaaa tcaatctttc ttgcttgaaa gaaaattttg attttgcttt aaagagttta
    11221 gaaaaattgc ttttaaaacc aagaatagaa gaaaaaactt tgcaaaaatt aaaaatcaat
    11281 gccttaggtg agctcgcgag taaaaatagt gattttgatt atttagcaaa aaatttactc
    11341 aatgctcaaa tttttaaatg taaagaattt caaagtccaa atgatggaga tgaaaaaagt
    11401 atagaaactt tgtctttaaa agatttgcaa aatttttata aaaattttat ccatcttagt
    11461 gatttggttg tgattttagg aggagattta gaagaaaaac aagccaagga agatctttta
    11521 aaactcttat caaaacttca aataggcaaa aaaaatactc caaaaaaata tgagttaggc
    11581 aaaaacatca aagatgaaat tttggtacgc ccagaaagtg aacaagctta tatttatttt
    11641 gctacgcctt tttttgctga ttttaaagat aaggatttat atcttgcaaa aattgcctta
    11701 tttgtgctag ggcaaggagg atttggttca aggattatgg aagaaattcg tgttaaaaga
    11761 ggtcttgcat actcagctta tgctatgctt gatatgaata tgtctttttc tagagttttt
    11821 ggatatttac aaactaaaaa tgaaagcgct aaagaagcta aaaaaatcgt aaaagagctt
    11881 tttgaagatt ttataaaaaa tggcatgact caaaatgaac ttgatcaagc taaaaatttt
    11941 ctcataggat caactccttt gcgttatgaa agcttaagca agcgtttatc tatgtctttt
    12001 aacgaatttt atcaaggttt aaatttggga tattataaag aagagttaaa acttatggaa
    12061 aaggttaaac ttgaaaccat aaatgcttat attaaaaaac atcaagagct tttaaatata
    12121 agttttgcaa gcatacaaaa tgaaaattaa agaaagtgat tttgaatttt ttaaaaaatt
    12181 aaaaattaga agtgctattg atttagcgct tcttttacct aaaaaaattg aaaatttaaa
    12241 tccaagtaaa aatcctaaag aaaatgaaat ttgtacccaa aaaatcacta taaaaagcgt
    12301 tagttcaaga aaaaatcaac tttttggttt aggtttttgt gaggaatggc aagaaaatat
    12361 ttcttttgtg ttttttcatc ctagagcttg gcattttggt atttgtaagg taggaaaaga
    12421 gcttattttt aatgctaaac tctcgcattt taatcacact tggcaattta acaatcctaa
    12481 aattttaact tcttttgagg gttttagtcc aaagtatcaa attttaggtt taaaagatac
    12541 aaaaattgct gcttttatac ataaatatct taattatgaa aatttaaaag aaagtggcat
    12601 agaggataaa tatatacatt ttcttttaaa tttgcatgct tatgatgaaa aaagtttttt
    12661 tatgtttgaa aatttgcaaa attttagcaa agatttaaaa tatatagaaa tatataattt
    12721 tttaaagcgt ttaaaagcta aaaaaacgca ttttaaagct catcaaatca atgtttttaa
    12781 tatagccaat tggcttaaag atttgccttt ttctcttact aaagatcagc ttaatgcctt
    12841 aaaagacata gaaaaagatt tacactcaaa agaagccaaa aggcgtgtga ttatgggtga
    12901 tgtggggtgt ggtaaaacct tggttttact tggtgcggct ttgatggttt atcctaagca
    12961 agctatttta atggcaccta ctagtatttt agcgtatcag ctttatgaag aggctaagaa
    13021 atttttacct gattttatga atattttgtt tattaaaggg ggtaaaaaag aaaaagattt
    13081 agaacaaaat atccaaaaag caaatcttgt tataggcact catgctctaa ttcatttaga
    13141 aagccataat gccgtacttg taatgataga cgaacaacat cgttttggat cagctcagcg
    13201 tgagaaaatt cattctttaa ataaacaaga atttgcccct cattttatac agttttcagc
    13261 tacgcctatt ccaagaactt taagcatgat acaatctgaa cttttaaatt ttagctttat
    13321 taaacaaatg ccttttaaaa aagatattac aacttattgc atacaaaatg aaggtttttc
    13381 taagcttagc gagaagatca aagaagaaat cgctaaaaat catcaaatta tcattattta
    13441 tcccttattg agtgctagtg ataagattcc ttatctttct ttagagcagg ccaaagaata
    13501 ttggcagagt cattatgaaa aagtttttgt aactcatgga aaagataaac aaaaagatga
    13561 aattttagag cgttttagag acgagggaaa tattttacta agcactacag tggtggaagt
    13621 aggtatttct ttgccaagat tgagtatgat agtgattgta ggagcggaac gtttaggact
    13681 tgctacttta catcaacttc gtggccgtgt aggtcgtgta gggcttaaaa gtgcttgcta
    13741 tctttatact aagcttaaag aaattccgag tcgtttaaaa gaatttgcta gcactttaga
    13801 tgggtttaaa atagcagagc ttgatcttaa aaatcgtttg agtggagatt tgctcgatgg
    13861 ttttatgcaa catggaaatg agtttaaatt ttttgatttt tccaaggatg aggagatttt
    13921 agaaaaggta aaaaaagatt tggcaaaaaa attgccaaat taatgtccgc cgtacttgta
    13981 aagcatattt tgaaaatgtg aagctatcat ttgtgcacgc tgtaaaatga catttttcat
    14041 ttcttcatta taaactatat ttaaactttc ttcaaaaagt tttagccaaa tttcaaaaaa
    14101 ctcttgagga aaaggaggta gatctaagtg cttttttaag ggttgcccat tataatcacc
    14161 ttcgcctaaa agcatgcctg cccaaaaatt tcctattttt gctttatgtt ctttccactc
    14221 ttcatcactt gttccaatag cattgttaaa aataggacct aaatccttat cttttctaac
    14281 tttttcataa aatatttcca tgagttttgc tatgctttct tgattaattg tttcaaattt
    14341 catataagcc tttcttgaat gttaatttta tggcgttaat atagcaaaaa taagataaat
    14401 taaatttaac ataagttaag aatggaaaat attatataat gaaagattat ttagaacttt
    14461 tatctagtgt aggaaaatta aaaaaat
//
LOCUS       DAPIWV010000038        14421 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.039, whole genome shotgun sequence.
ACCESSION   DAPIWV010000038 DAPIWV010000000
VERSION     DAPIWV010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14421
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.039"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..665)
                     /gene="wecB"
                     /locus_tag="RJ272_000820"
     CDS             complement(<1..665)
                     /gene="wecB"
                     /locus_tag="RJ272_000820"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000758382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDV7381930.1"
                     /translation="MKKILIVFGTRPEAIKMAPLVKIMENRNDVNFRVCVTGQHRQML
                     DQILNIFDIKPDYDLNIMQENQDLYDITLKILCGMKNVLNDFKPNIVLVHGDTTTASV
                     TALAAFYQKIKIAHVEAGLRTYNICNPWPEEANRQIIGVLANIHFTPTVKSAENLIKE
                     GKNKEGIFITGNTVIDALFYMTEKIKNDKTFKIKVLSSIGNEYKINDNKKFILVTGHR
                     REN"
     gene            complement(720..1667)
                     /locus_tag="RJ272_000821"
     CDS             complement(720..1667)
                     /locus_tag="RJ272_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDV7381931.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSTNPKVVDA
                     DAMASKAEEIMLKYKIKEIVVSKENKVVGIIQFYAIGEI"
     gene            complement(1677..3335)
                     /locus_tag="RJ272_000822"
     CDS             complement(1677..3335)
                     /locus_tag="RJ272_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HDV7381932.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKMAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(3337..4455)
                     /locus_tag="RJ272_000823"
     CDS             complement(3337..4455)
                     /locus_tag="RJ272_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDV7381933.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIIWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTNGILSLLGSTSTASEDLNYLKGYIESSDMLKILDGKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(4455..5117)
                     /locus_tag="RJ272_000824"
     CDS             complement(4455..5117)
                     /locus_tag="RJ272_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381934.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAEIGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            complement(5114..5896)
                     /gene="kpsM"
                     /locus_tag="RJ272_000825"
     CDS             complement(5114..5896)
                     /gene="kpsM"
                     /locus_tag="RJ272_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HDV7381935.1"
                     /translation="MLNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGVMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(5968..6375)
                     /locus_tag="RJ272_000826"
     CDS             complement(5968..6375)
                     /locus_tag="RJ272_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381936.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            6450..7013
                     /gene="ciaI"
                     /locus_tag="RJ272_000827"
     CDS             6450..7013
                     /gene="ciaI"
                     /locus_tag="RJ272_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HDV7381937.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKHQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            7050..7739
                     /gene="dut"
                     /locus_tag="RJ272_000828"
     CDS             7050..7739
                     /gene="dut"
                     /locus_tag="RJ272_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDV7381938.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYSILNDIELIIHKCSGFGFNLEELLSIYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            7741..8454
                     /locus_tag="RJ272_000829"
     CDS             7741..8454
                     /locus_tag="RJ272_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HDV7381939.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(8437..9402)
                     /gene="tilS"
                     /locus_tag="RJ272_000830"
     CDS             complement(8437..9402)
                     /gene="tilS"
                     /locus_tag="RJ272_000830"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDV7381940.1"
                     /translation="MQIKNEILSLLKRGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKQAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDYLILAHHLNDQFEWFLMQLSRGAGLAEILGMQEYEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFSYLGEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKEFLKGDCVLGGKIALVYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(9392..10711)
                     /gene="rimO"
                     /locus_tag="RJ272_000831"
     CDS             complement(9392..10711)
                     /gene="rimO"
                     /locus_tag="RJ272_000831"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDV7381941.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPNKADVLIVNT
                     CGFIDSAKKESINVILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIVAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYFYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCAFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKGFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            10784..11881
                     /gene="prfB"
                     /locus_tag="RJ272_000832"
     CDS             10784..11881
                     /gene="prfB"
                     /locus_tag="RJ272_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDV7381942.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASMLYRMYLRFCEREGF
                     KVETLDFQEGEETGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(12042..12356)
                     /locus_tag="RJ272_000833"
     CDS             complement(12042..12356)
                     /locus_tag="RJ272_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381943.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(12478..13596)
                     /gene="truD"
                     /locus_tag="RJ272_000834"
     CDS             complement(12478..13596)
                     /gene="truD"
                     /locus_tag="RJ272_000834"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDV7381944.1"
                     /translation="MNLAEENTIFKPLYSLKHSPINAYFSKNSDDFVVREKPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHSKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(13565..14386)
                     /locus_tag="RJ272_000835"
     CDS             complement(13565..14386)
                     /locus_tag="RJ272_000835"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDV7381945.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIETIAKKHGVKLNIFGKAVKGKYEFSGREHHF"
BASE COUNT         4967 a         2570 c         1829 g         5055 t
ORIGIN      
        1 aaattttctc tacggtgtcc agtcactaaa ataaattttt tattatcatt tattttatat
       61 tcattaccaa tagaagataa aacttttatt ttaaaagttt tatcattttt aattttttcc
      121 gtcatataaa acaatgcatc aataactgta ttgccagtaa taaaaatacc ctctttattt
      181 tttccttctt ttataagatt ttcagcactt ttaaccgttg gggtaaaatg aatatttgcc
      241 aaaacaccta taatctgtct atttgcctcc tcaggccaag gattacaaat attataagtt
      301 ctaagtcctg cttcaacatg tgctattttt attttttgat aaaaagcagc caacgctgtg
      361 acactcgccg ttgtagtatc accatgtact aaaacaatat ttggtttaaa atcatttaat
      421 acatttttca tgccacaaag gatttttaaa gtaatatcat ataaatcctg attttcttgc
      481 ataatgttta aatcataatc gggtttaata tcaaaaatat ttagaatttg atctaacatt
      541 tgtctatgtt gcccagttac acaaactcta aaattaacat catttctatt ttccattatt
      601 ttaactagcg gagccatttt tatagcttcc ggtcttgtgc caaatactat taaaattttt
      661 ttcaccaaat aaaaactcct tttaattttt cactaattat aatatataaa aaatgcaaat
      721 taaatctccc ctatagcata aaattggata atacctacaa ccttattttc cttagataca
      781 acaatttctt taattttata ttttagcata atttcttctg ctttacttgc catagcatca
      841 gcatcaacta ctttaggatt tgtactcatg atttctttag ctttaaaatc aaatcttggt
      901 ttatcacttg cttttaaagc acgacgcaaa tccccatcag tgataatacc aaccaatttt
      961 tcattttcaa gtactacaca aagtcctagt tttccactag tcatcacatc aacaagatcg
     1021 ttaaattcgg tatcaggatg aactatagga aggttgcttg aaaccataag atcttttacc
     1081 ttggttaaaa gcttacgacc caaacttccc cctggatgaa aaagggcaaa atcatcaggc
     1141 ttgaaatttc ttaccttcat caaagcagca gctaaagcat cccccataac caaagttgcg
     1201 gttgtcgaag acataggagc aagctgcaaa ggacaagctt ccttttccac agctatattt
     1261 aaaaatatat cgctttgctt tacaagggtg gaattttttt taccacacat tactataagt
     1321 ggaattttac gcttttttat agctggaatg atttttaaaa tttcttcagt ttcccctgaa
     1381 tttgaaatag caattaaaac atcttcagga gttagcattc caagatctcc atgcaaagcc
     1441 tctcctggat ggatgaaaaa gcttggcgtt cctgtacttg ctaaagtagc tgctatctta
     1501 gcacctatat gacccgattt acccattcca ctgactatgc aacgcccttt ggtatttagc
     1561 atcaaattca cagcttgatt aaaattttca tctaaatttt tagccaaatc caaaatagct
     1621 tgcgcttctt tttcaaagac ttctttggct atttcaagag tattcatttt taaaccttaa
     1681 agattaagca caacattggt tgcaatagca atttgataaa gaatttgagt taacattgaa
     1741 aaaatttgca aattctcact atctactttt ggcaatacta acacagaatc gcctggtttc
     1801 atatctatac cactatgata tttttcagct tttccattgc ttcgtatcac caaaactttt
     1861 gaagtatccg ctctttctcc ataacctcct gcaagattga tataatatct taaatctttg
     1921 cccttatcat acacaaaagc tccaggtaaa gaaacctcac cttgaactat gatgagatta
     1981 ttcttacttg gtacattaat agtatcacca tcttctaaaa taaccgaatt ataagacttt
     2041 ggattatcaa tgacaatttg acccttaggc tctacttgct tagctctttg gataaattct
     2101 aaaatcgttt ttgcttgttg agctcttata gctgcacctt gagctgtaac agaaccacta
     2161 gttaaagcta gagtttcaag ctctttaagc tgagcattga taagttcttt ttgagttcta
     2221 gctacacttt ttctaaacac ttgtaaagct tgcatgtttg attgtggatt agctttaatt
     2281 aatttagaaa tatcttctaa agtcgttcct ttacccacaa ctaaagtttt taaaccatta
     2341 tgctcgccat ttacacttat agttatattt tcagaaacat actcagggtg aaattctacc
     2401 tcatctcccg ttctaagtaa aacttttgaa aattgcattt tattataagc actgacatca
     2461 agtttatgat cttcaccata actttttacg atagcattag tcacgatagg tttagcacct
     2521 gatactctag ctaagtcagc taaagtttta atatcatttg aaagttcaaa acgaaaaggt
     2581 ctttgcacat caccgttaac aaaagcgtaa ttttgaacat ttcctactaa aataacatct
     2641 ccacttctaa aaggaaaaag atccatttgc ccctttagta aaaaatcata taaatcaata
     2701 ttttttatca cgctgttatt acgcaaaatt tgaatatctc taaaacttcc atattctaaa
     2761 tttatacccc ctgctttatc aagatactgg atcactgaat ccgaactaag tccttgataa
     2821 agtcctggag cattaacgct tcctgttaca aaaacactga cattttgata agcattcata
     2881 tctgcataaa caaaaacatt gcttttatag attttattaa cacgtgcttt tataacactt
     2941 acaagggcgc tatttttcac acctagtaaa tttacagctc ctactttagg gataaaaata
     3001 tttccttgag aatccaccac taaaacttgc gaaaactcaa cagctcccca aattttaaga
     3061 ctgatttgat caccaactgc catcttataa tctgggttat aaactctttg attgtaattt
     3121 ttaaaatttc cattaaaaag atgagcgcca aatactaaaa tttgatgaat ttttgtaaga
     3181 ttattttctt tatttgctat atcataattt gagcttaaat tttgatctat gctagttgta
     3241 gtagaacctt gatcctctgc tgaaatgatt tgtgaaacat ccacagctcc aaaacataaa
     3301 atacaactaa aaagtaaaat taatattttt ttcattttaa tacttatgct cctctattat
     3361 cattttaata aatttaacaa tcccaaaaat caaagataat acaataaatg ctgttaaaat
     3421 atcataaatt ctttcaggat attttgcgct ttctggaata tctggacttt gaatgatgac
     3481 aagttgtttt atttttctta atgcttctat tctagcactt tcataagctt ttaaagctgc
     3541 ttcataagct ttttgcgcaa aagtagcttc tatagttaga tcttgaaatt tagcagccaa
     3601 atcattaagc ttttgagaag aattgttagc tgaaatttta gatttttccc ttaaaagctg
     3661 ttttttaatc gcttcaattt ctgctttaag tgctactact tcaggtgctg catcattcat
     3721 atagctttgt aaagttaaaa gtttagcttc tttttgagct aaattagtct caatttgcgc
     3781 aaccaaactt gctttagctt cagcttgttt caagggatca aaaaccccat atttattttg
     3841 aaaagcaatc aaatcatttt gtgctttttg atatcgttct ttgtattttt gtacttcatt
     3901 ttcagcaaaa gccatttgtt ctctagctgc tttatgagag atttcgttga taaacttttc
     3961 actttcttgc ataatagttt gagcaatcaa atgagctgat ttaggtgtaa aaccttctac
     4021 ttctacctgc aaaagcttag tagtttcatc cgtatgcacc ttaactcttg cttggtaata
     4081 tttaagataa gattctatcg aacttgaatc ccaaatttta aaaggcaaat ctatatgttg
     4141 ttcttgataa agacttttaa gtttaatttt cccatctaaa atttttaaca tatcacttga
     4201 ttctatataa ccttttagat aatttaaatc ttcgcttgct gtagaagtac taccaagcaa
     4261 agacaaaatt ccatttgttt gagcactttc tccacttgtt gatctaacat ctaaaatcat
     4321 cgtgcttaca tatcttggcg ctgcaatcaa tgtataataa atcacaacaa aaatcattat
     4381 aaaccaaata attttaaaag aatcaaatat acttaaatct ttgatttttt ctaataaagt
     4441 tttattttct tccattaagc ttttccttga tatacagcta ttccttcatc tacatcatca
     4501 taaaccgtaa tttgtccatt tttcatataa attattttat cacaccattc tttaatttca
     4561 gctacattat gagataccat aatcaccttt gatttgctta atctttctct atataatttc
     4621 acgctttttt ccctaaaagc aggatctcca acagctccag cctcatcgat caaataataa
     4681 tcaaaatcaa aagccatact aagtccaaaa gctatcctag cactcattcc cgaagaataa
     4741 gtcttcatag gctcatcaaa aaattttcct atttcagcaa aatcttccac aaattttact
     4801 ttttcttgaa gttctttacc cttgtatcca tacaccctag ctacaaattt agcattatct
     4861 ctggcagtta aagaaccttg aaaagctcca tttaaaccca aaggccaaga taatttttta
     4921 ttagtaatta tcttgccact atcaggaagc tctgctccgc ttaaaagtct catgagagtg
     4981 gacttgcctg cgccattata tcccattaaa cctatgctac aattttcagg aaattcaaaa
     5041 gtaaaatttt taaaaacata atgccttcca ccactaaata aaggataaga tttagttaga
     5101 ttaattagct tgatcattct ttttttgccg ccgttagagc ttgtctatta tagtagtaaa
     5161 taaaaagccc tataaataaa acaagtaaaa tccaaaatat agcataaaaa taactatatt
     5221 catcttgcaa aggataattt tcaaaaaaat taaatcttaa aagctccatt atgtgaagca
     5281 aaggattgta ataaaatata tcaagtaaag gacgaggagt taaccaggtg ggaaatataa
     5341 tcccagaact ccaataaaat actatactaa aataagctaa taaagttctt aaaggttcta
     5401 caaagtgcca aacaatagca aaacaaatcc ctaaagcaaa agctgagcat atgagtaaaa
     5461 aaatacaaaa taaaactcca agtaaatgaa caggaaatac atcgagtcta aagaaccacc
     5521 ctgcaaaaaa aagcacagtg ataaaaatca caaaataaat acaaaattca agcaaagttc
     5581 tagcaataaa tacatgtata ggttttacag gtttataggc aaacaaagat aaatttgctc
     5641 ctattccatt cataagctga gttactatac ttctaaacat aaaaaaaggc ataacgcctg
     5701 aaatcaaaaa cataaaaata gaaattcctt caggcataac ttgatgatga tattccctaa
     5761 taacagttcc tataatagtc accaaaagca caacactcat aggctctcca actacccata
     5821 tatatccaag atacctattt tttccaaatc tagtttttaa ctctctaaaa aataaagcgt
     5881 gaattacatt taacatttat tttctatacc taacaattta cataaaccat aatcataact
     5941 cattttttta aacaaaatca taaaaattta ttttttacaa aattcaagct ttttactaag
     6001 tcctaaagca ttgttagtaa atttaagcca aaaaagctct aaggcataaa tttttgcact
     6061 tttatcaagt ttagcaaagg gaaatttaga aaaataaatt ttcatttgct ccttgcttgc
     6121 cattttaaac tcggccttag cttgcacacc ttttaaaaag gctattttac tttctttggc
     6181 tatattaagt gctatacttg aattttcact ggctaatctt atatgcttag tatcttcatg
     6241 agaagcgata ataaaagcta aattcttctc atcaaaagca taaaaagcac tagctgtata
     6301 aacacctttt tcatcaatca tagcccaaga taaaagctgc tcatttttta taaattctaa
     6361 aattctttca tccatattgt aaaaattata ctaaaatatt tttaaaaata accgattttt
     6421 aatttaaact ataaatataa ggggaagaaa tgcaaattga tgctagcaaa aaccaaagtt
     6481 tttcgatgga ttatacaaca aaaagtggca aacatttagc cttatctatg tatgacaatc
     6541 aaagcgtgag ttatgcaaat aatgaagaag gtaaaactct taatcttaag catcagtatg
     6601 gctttagctt tacttttgaa ggctctaagc tcacacaaaa tgatcttgat gagattaaaa
     6661 atgctatgaa agaagttgaa cctatgatca aagacttttt agcaaattct aaagtcggag
     6721 agttaaagcc aaaagaaatt atagaatcag ctatgcaaat ggcaaatgtt ctaccaacac
     6781 caaatgatga aaaccatcaa aatgctatta tgaataattt tacaaataaa ctcagtgatt
     6841 tactaaaaca aaatcaaaca gatgataaag atatcaatgc ttccatgctt gaagatagca
     6901 aaaaacttct tgatgaagtt ttagaacaaa tgaaaaaaca acttgaaaaa cagcaagaaa
     6961 aagccaagga aaatcaagat aagacagatg atagtttaaa tctttacgct taaatcatat
     7021 aatattaaaa attatcaagg agtttttaaa tgacaaatat cgaaatttta gaaaatatgc
     7081 tcaaactcca acaaaaactc aacgatgaaa caaacggctt aaattgggaa aatggctaca
     7141 ccaaagaagg aaaactgatc agttggagac gctgtattta tatggaatgt gcagaactta
     7201 tagactcttt tacatggaaa cattggaaaa atatttcaag tccaacaaat tgggaaaatg
     7261 tgcgtataga gattgtcgat atttggcatt ttattttaag tcttttactt gaagaatatc
     7321 gcgataaaaa caataaagat ttcaaagcta tagccacaga agttaatgct gtaagcgtgt
     7381 ttcaagattt ttgcaaagaa gaagaatacc ctaatgaggg tgatatttat agcattttaa
     7441 atgatataga gcttattatc cataaatgca gtggttttgg atttaatctt gaagaattac
     7501 tttcaatata ttttacttta gctattaaat gtgggctaaa tcttgaaatt ctttataaga
     7561 cctacatagg taaaaatgtt ttaaatattt ttagacaaaa caatggttac aaagatggta
     7621 gctataaaaa aacttggaat ggcaaagaag acaatgaagt tttagctcaa attttagaac
     7681 aagagcttga ttttgatact atttataaaa aactagaaga atgctacaaa aaggcataat
     7741 ttggatattt taaaacttgc aatcaaagat tttttaagtc ttaaattttt aaaatttgcc
     7801 ttaattcctt tgatttttag ccttatactg atgctttttt taggagtact tggcttttcg
     7861 gccttgcttg attattttaa ttctttattt agcgttggag aggattcgtt ttgggcgtgg
     7921 ttttatgccc ttcattttgt acaaatttta atcaccatca taagtttttt attttcaggt
     7981 tttattgttg tttttgcttc ggttttttta gcccttttta tcacttcttt tcttactcct
     8041 tttatcgcta aagaaatcaa ccaaaaatat taccattatg ataatacaaa cgaagtttca
     8101 accctaaaaa ctatctttga aatttttaaa atatttataa aatttatagg gattttattg
     8161 ctttgcacct tggctttatt tttacctttt atcaatattt ttgtatatta tcttgctttt
     8221 tattatctct ttcacaaact tttaatgatt gatgttacaa gcacgatttt agacaaagaa
     8281 agttttaaaa attttcattc tgatttttcg cctttagagt ttaaatttag cactctttgt
     8341 ttttatctac tctcatcagt gccactttta ggactttttt tgcaagtatt ttttgtgatt
     8401 tttctcacac atttaggcta tcaaagaatt ttaaaactaa aagctaaggc ttgaaatatc
     8461 gattttgtga ttatataaat aagctcttaa aagtcttgga attttagcta ttctacactc
     8521 ttctttaaaa tttttaggta atttttgaca agtttcatat tcaaaaacaa tagcttgttc
     8581 gtttttatat acaagtgcta ttttaccacc taaaacacaa tcacccttta aaaactcttt
     8641 tctttgcgct gtgcttaaaa gtaaaccttt cattttcact gctctagcaa tcaaactttc
     8701 atttttagga caaataagaa gtccttgaat ttctttgata ttttcaaaat cataaagttt
     8761 tttcctatct tcaccaagat aagaaaagct tctttttaaa ccctgatgaa atttactcac
     8821 aaaggcatta gagaaatttt ttcttatata atttctaaaa tatttttcat tttcattact
     8881 ttcatcatgg aaataaaaaa tatctttttc ttttaaaaaa gatgaaattt catctttact
     8941 tataaagagt aaaggacgta aaagtgtata atttgatcgt ttttcatact cttgcatacc
     9001 taaaatttca gccaaacctg cgccccgtga aagttgcatc aaaaaccatt caaactgatc
     9061 atttaaatga tgggctaaga taagataatc ataatcttgc tcaagacaaa ttttttcaaa
     9121 aaaatcatag cgaaaatctc tggctttttt ttcaaaatta ctttgaaatt taggagcctg
     9181 ttttatgaaa atttttttat gaaatttcaa agcaagttct ttggctttta actcttctaa
     9241 atcactattt tttctagttt tataatttat catcacaaga tcaaagtcga tcttttcttg
     9301 cattaaaaga taaaaaagcg cactagaatc acttccataa gaaaaagcga gtaaattttt
     9361 accccttttt aaaagggata aaatttcatt tttaatttgc atctactttt cttaaagcct
     9421 tagcaaggag ctttttatca aggttttgta aaatttcaca ttcataaatt tgccccattt
     9481 ctaaatttcc acattcactt tcattgataa gaatttctcc atcaatctct ctatcccatc
     9541 ttagatcttt agctgcgatg aaaaactctc cctcgctact ttctcctgtg caaactacta
     9601 aacgcttttg ccctacttct ttttcaaaac ctttttctat cacttcatca acaatttttt
     9661 ctatgatttt aagcctttta ttgatcactt taaaaggcac ttgctccata tcaaaagcag
     9721 ctgtatcttc ttccttggaa tacgcaaaaa cactcactct atcaaaacca aagtctttaa
     9781 caaatgcaca aagttcttca aaatccgcct cactctcacc tggatgtcct acgataaagc
     9841 ccgtgcgtaa aaagctattt ggcgcacttt tcattaaatt tagcatttct ttaagtcttg
     9901 tgctatttgc cccacgcttc atgattttaa gcatattatc acttatatgc tgcaaaggca
     9961 tatcaaaata atttacaaaa atttcagaag ctataatgcg tttgatcaaa gcttcactcg
    10021 cactcgtagg ataaaaatat aaaattctag ccgctcttat acctttgatt ttttccacct
    10081 catcgattaa gcgtataagt ccatcttttt cacccttatc aaacaaataa gaacttgtat
    10141 cttgtgcaat aaaagaaaag tccttataac ctctagctac caaatcttta agctcagcta
    10201 caatgctact tatttcgcga gattttaact tgcctttaaa acttggaata gcacaaaaag
    10261 agcatttttg attacaacct tcggcaattt ttataaaagc atgggaattt gaacctgtga
    10321 taatgcgttt ggaattttca ctctgtaaat aagtcgaatt tgaaaataaa tttgtttttt
    10381 taagtatcat ttcgtcgatt ctttcataat cacccacacc tgtgaaaaga tcaacctcag
    10441 gaagttcttt cataagttct tcgcggtaac gctgcatcaa acaacccgta accaccaaaa
    10501 gagaatcttt ttttctttgt tcgtgcaaat ccaaaatcac attaatactt tctttttttg
    10561 cactatcgat aaaaccacag gtatttacga ttaaaacatc ggccttattt ggttcatcgc
    10621 aaagctcata agcactaaga cgtcctagca tgatctcact atcgactaaa tttttattac
    10681 aacctaaaga cataagataa agttttgaca tttttttcct atattaaagt tttcttttga
    10741 tataattttt gattttaaaa tataattata gcaaagaaat tttatggata attacgaatt
    10801 tagcgaactt ttaaaaactt taaaaaacaa agtcggcaac atagcctcca tcatcaagcc
    10861 tgaaaatatc caaacaaggc ttaaagaaat cgaagagctt gaaaattctc cttctttttg
    10921 gagcgatgta aaacaagcag ggatcatagg caaagaaaaa accaaaatca ccaatctact
    10981 taaaaactat gaaaatgctt ttaatgccct aaatgacgca agcgaacttt ttgatctggc
    11041 taatagcgaa aacgatacag aaacgcttga agctttattt aatgacgcac caaaacttga
    11101 agataccatc acaagtcttg aaatttccat gcttttaagc ggggaaaatg atggtaaaaa
    11161 tgccattgtt tccattcacc caggtgcggg tggaacggaa agtaatgact gggcaagcat
    11221 gctttatagg atgtatttaa gattttgcga aagagagggt tttaaagtcg aaactctaga
    11281 ctttcaagaa ggcgaagaaa caggacttaa agatgtgagt tttttggtta aaggagaaaa
    11341 tgcttatggt tatttaaaag ctgaaaatgg cattcaccgt ttggtaagaa cttctccttt
    11401 tgatagtgca ggacgccgcc atacaagctt ttcaagtgtt atggtaagtc ctgagcttga
    11461 tgatgatata gaaattgaaa ttgaagaaaa agacataaga atagattatt acagagcaag
    11521 cggtgcaggc ggacaacatg ttaataaaac agaatcagcc gtgagaatca cacattttcc
    11581 aaccggtata gtcgtacaat gccaaaatga cagaagtcag cacaaaaaca aagccaccgc
    11641 ttttaaaatg ctaaaatctc gtctttatga acttgaactc atgaaacaac aagatagtgc
    11701 taatactgga gaaaaaagcg agataggctg ggggcatcaa atccgttctt atgtgctttt
    11761 cccttatcag caagttaaag ataatcgcag cggagaagct ttttctcaag tggataatat
    11821 tcttgatggg gatatcaaaa aaatgataga aggcgttttg attgctttaa aagcagagta
    11881 acaggcttta aaaataagta atttccgcaa aatgtcagta taaaaaggaa ttagaaagat
    11941 agcgggattt tcccgcttgt tttattatct tgcataaaac ctaagagcat cattcacaga
    12001 ataataaact cttttcttaa aatctttatc gcaataaaca ctcacaactt tatagtcttt
    12061 ttatcgtttg gatttaataa gaaaacatag tttgagtatg gagttttatc tatttctaaa
    12121 tcacgcttca tttctttaat tttgccttct ggattgttaa tatcactaat tgttctgact
    12181 gaagtataat cataaagttt ataatttgga tattttttca taatctcttg attacctaaa
    12241 tcaaacatag cttgatcgtt gccattgttt tttaactcga ctaaatcgcc atcgccacaa
    12301 tctacaatca aagtcatagc tcctaaagcc aaagcacttg ttaaaatctt tttcattatt
    12361 tttgctccta gttttaaaat taaattaata taactatacc taaatttaaa atttaaatat
    12421 catttttgca ataaattcta aagtaaaaat cacgtaaaaa tttaactcat aattatttca
    12481 ttcaaacaaa tttttatgca aaatttcttc taaaaccaca gtagcataag agcctttttg
    12541 caagaaaaac tctatacaaa aatgagcttt ttcttcatca taacgccatt ttaactcttc
    12601 taaatatccc cacataaagc gtcttgaacc ttgcatttta gccttaaact ccaaagtatc
    12661 tttaaaaatt tcattttcta aatttaaggc caaaccttct cctgtttcat aagccttagc
    12721 accgattaaa agccccatgg cgcttatatc tcttgcctta aaacgcccaa gctcagcact
    12781 taaatcctcg cataaaaaac actttccaaa aggataatgc cctaaaacct caccttttaa
    12841 aagcttaaaa aattgttctt gttttttaag ttccttagct tcttctttag aaattttata
    12901 aatttggatc aattcttttt cgctaaaatc atttgcaaaa tgtgataact ccactctttt
    12961 actcaaatag cgattaaaaa gctcactttg aaaagctgaa attaaaaact ctttcatttt
    13021 tacatttttc atttttttgc cacgcaaaat ttcaagccct tctttataat tatccccaaa
    13081 ttttccaaaa cgctgataac caaaataatt cgcaaaacct tgtttatcca aattcatcaa
    13141 agcttgttct agctttaaag catcgcttgg caaaactttt tttaagcgta tgaaaaaaga
    13201 atttcctttt aaatgcccta ttcttagctt gttttcatgg gtaaaaattt ctaaaatttt
    13261 aagtttagaa tgagaaaaat ttgacaaaaa actctcaaat tttttaggca tagaaaggta
    13321 ttgaaaggtt gatccttgct tgtctttaag ccctgcataa ccaaaatctc ttattttaac
    13381 cccgcttgct tcacttaaaa tttttaaagc ttcatttgtg gttaaatctt ttttattgat
    13441 atgcaaaata agatgttcac ccttgccgct aaattcatac aaaggctttt cacgcactac
    13501 aaaatcatcg ctatttttac taaaatacgc attaatagga ctatgtttta agctatacaa
    13561 aggcttaaaa atggtgttct cttccgctaa attcatattt tcctttcact gcttttccaa
    13621 agatatttaa tttcacgccg tgttttttgg ctattgtttc tatattttgc cgttcttttt
    13681 catcaaaagc aaacaaaatt tcatattctt ctccgctata aagcgtataa tcatcaagtt
    13741 ttttaaacca agaaataccg catttattta aagctaaaag tcttgataaa tctttgctta
    13801 aaccatctga aatatccata gcacaagaaa ttaaaggtgc gacttcataa aaaaaactag
    13861 ctcttaattt tggctttata aatacatggt ttggttttaa agtgccccca ttttgtaaaa
    13921 tttcaagccc ttttaaactt cgccctaatt ttcctgtata agcaagtaaa tgtccttttt
    13981 ttaaaccttt tctaaaaacg gctttatcgt taatctttga aatgatagta agactaatgt
    14041 ctattttatc attgcttata gtatcaccgc ctatgatttt tatattaaat ttcctagctg
    14101 tttttaaaaa acctttttgc aaggctttga tctcattttc gcttaaattt tttggtaaag
    14161 caagtcctaa aagtgcgtat tttggtacag cattcattga aatagcatct gagatattaa
    14221 caagcattgc ttttgtagca atttgctcta agctaaacca ctctctttta aaatgcacat
    14281 tttcaaaaaa caaatcctta ctaaaacacc aatcatcaat aatagctcca tcatcgccat
    14341 ttttttcatt taaaaaagct ttgataataa aatcttcttt gttcataatg cgtgatttta
    14401 taaaatttcc ttttaaattc t
//
LOCUS       DAPIWV010000039        13971 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.040, whole genome shotgun sequence.
ACCESSION   DAPIWV010000039 DAPIWV010000000
VERSION     DAPIWV010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13971
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.040"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..459)
                     /locus_tag="RJ272_000836"
     CDS             complement(<1..459)
                     /locus_tag="RJ272_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381946.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDD"
     gene            complement(516..1283)
                     /gene="fliR"
                     /locus_tag="RJ272_000837"
     CDS             complement(516..1283)
                     /gene="fliR"
                     /locus_tag="RJ272_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HDV7381947.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(1270..1905)
                     /locus_tag="RJ272_000838"
     CDS             complement(1270..1905)
                     /locus_tag="RJ272_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381948.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSNLYQMDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKIYTINVNGIC"
     gene            complement(1918..2991)
                     /locus_tag="RJ272_000839"
     CDS             complement(1918..2991)
                     /locus_tag="RJ272_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDV7381949.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVLDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(2991..3782)
                     /gene="rpsB"
                     /locus_tag="RJ272_000840"
     CDS             complement(2991..3782)
                     /gene="rpsB"
                     /locus_tag="RJ272_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDV7381950.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAISEEDFGEEQE"
     gene            complement(3898..5061)
                     /locus_tag="RJ272_000841"
     CDS             complement(3898..5061)
                     /locus_tag="RJ272_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7381951.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNEVLDK
                     VREKYDEKFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5189..6313)
                     /locus_tag="RJ272_000842"
     CDS             complement(5189..6313)
                     /locus_tag="RJ272_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7381952.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6310..7560)
                     /locus_tag="RJ272_000843"
     CDS             complement(6310..7560)
                     /locus_tag="RJ272_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HDV7381953.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7562..8065)
                     /gene="petA"
                     /locus_tag="RJ272_000844"
     CDS             complement(7562..8065)
                     /gene="petA"
                     /locus_tag="RJ272_000844"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HDV7381954.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8156..9442)
                     /locus_tag="RJ272_000845"
     CDS             complement(8156..9442)
                     /locus_tag="RJ272_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HDV7381955.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     ACFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(9443..11302)
                     /gene="mnmG"
                     /locus_tag="RJ272_000846"
     CDS             complement(9443..11302)
                     /gene="mnmG"
                     /locus_tag="RJ272_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDV7381956.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     TRNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVEGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLKFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(11390..11887)
                     /gene="cetB"
                     /locus_tag="RJ272_000847"
     CDS             complement(11390..11887)
                     /gene="cetB"
                     /locus_tag="RJ272_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HDV7381957.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(11905..13284)
                     /gene="cetA"
                     /locus_tag="RJ272_000848"
     CDS             complement(11905..13284)
                     /gene="cetA"
                     /locus_tag="RJ272_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HDV7381958.1"
                     /translation="MIKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGGQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            complement(13388..13882)
                     /gene="cetC"
                     /locus_tag="RJ272_000849"
     CDS             complement(13388..13882)
                     /gene="cetC"
                     /locus_tag="RJ272_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HDV7381959.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
BASE COUNT         4907 a         2623 c         1696 g         4745 t
ORIGIN      
        1 atcatcatca aaactcaaat cttccattcc ctctgaattt atatctaaag aattttcatc
       61 aggcaaatca tctaaattta aattatctaa atccaagctt atatcagcat aaggattttc
      121 atcattgctt aacattggca aatcaataga tgtatgcttg ttcgcatctt tattattaag
      181 caaatttaaa aaatctgtag gtaaaaaagg tttttgtaaa atttgcgcat ctatatcttc
      241 tacattttga tttcgcgggg ctaaaaaaat caatctatcg catttttctt taagaatttt
      301 taaaggtgct ggagtatcac tatctacaac aatcacatca taattaccca aattttcact
      361 ataagcatta agttcttcaa aatcataaga cattttttta gcactaaggc ttacaagtct
      421 tgaaactaca gggttttcat ttaaaagtaa aattttcatc actttaatcc ttaaaaaata
      481 atcgctattt tacgataatt tcatttatcc tttccttagg agaaaaaaag agtttgcata
      541 tgagtaaaaa gttctaaaat taaattttta aaatattgca tcataactag taaaatagca
      601 atcaaaacta caaaacctag agctatcttt ataggatagc caataactaa aagattaaat
      661 tgtggcattg ttttcatcaa aagtccaaaa ataacatcgg ctaaaagtga aattccaagt
      721 ataggaaagc tcatagtaaa acctatgatg aaaatattaa acatacccat atttaaataa
      781 tgcattaaat tctcatgcgg ataaaatcca cctaaactaa tataacccaa agaatgactt
      841 aaaaacaaaa gcattaaatg atggccatca aaagcaagaa aaaacatcaa agcaagtaaa
      901 ttcaaaattt gtgccgtaat aggcatactc gttccagaac ttggatctaa tatacttgcc
      961 atagtaaatc ccatagtaaa agcaatctgc tcacctgcca tcataataat agcaaaaata
     1021 atttgaagca ttaatcctgc tatcattcca aaaatcactt cactaataag ctgtaaaaca
     1081 aaaaaactat ctaaatgcaa agattctaat ctagccaaag gatataaata catagtcaaa
     1141 aataaaacta tagtactttt tattaccata ggaatagaat tatgtgaaaa aaaaggaaaa
     1201 aaaactataa gaccactcat tctagcaaga agcaacataa aagttacaac atttttatcg
     1261 cctaaataat taacaaattc cattgacgtt tatagtataa attttatcac aaaaacttgc
     1321 gagcttacta tcgtgagtta caaaaaataa agccgcatca ttttctttaa cataagaaat
     1381 taaaagttcg ataacatttt tagcattatc aaaatccaaa tttccagttg cttcatcagc
     1441 aaaaataatc tttggttttt tacaaagcac acgtgcgata ctcacacgct gttgttgtcc
     1501 gccgctaagc tttcctattt tttgatgcaa aagtgtatca atacctaacc tttttaaaat
     1561 tttctcatct aaatcttgac ccgataaaac actagcaagt tcgatatttt ctaaagctga
     1621 aaaaccttta aaaagataat gtgtctgaaa aataatacca aaatcatagc ggcgaatttt
     1681 taatctttcg ttttcatcca tctgataaag attagaacct ttaaaaaaaa cttcaccttt
     1741 ttttggaatt aataaagaag aaagtatatg caaaagagta gatttaccac aaccgctact
     1801 cccttgaata gcaatgcaat ctttagtatt taaagtaaga tttaaaccct caaaaagcgg
     1861 ataatcaaaa ctatggctta aattttccgc tcttaagagt tccattttta accgttttta
     1921 aagttgtgca gcaacttcag ccgcaaaatc ttcagttttc ttttctaaac cttcaccaac
     1981 ttcaaagcaa ataaattcta caattttaat ttttccacca aattcttttt ctttttcggc
     2041 aattacttgt tctacagttt ttttgtcatc cagtacataa aactgaccca ttaaagtaag
     2101 tttgctatcg agttgagaat tatcggctat aaagctattc attttacctg gaatgatatt
     2161 atcccaaatt ttttcaggtt taccttgagc tttaagttct tctttgattt tttcttcagc
     2221 ttcttttaaa attgcatcgc ttaattgttt gcgacttgca aattgaggaa ttttatgttc
     2281 aggtttattt ggatctttca gtctacgtct ttcttcattt tctttttcaa gttcagcaac
     2341 caaggctttg tattcatttt caacaaaagt catatccaaa tcttcataac ttaaataact
     2401 tggtctcatt gctgcaatat gcatacaaat ttgtcttaat aaatctcttg attttgaagc
     2461 tacttcagca ctatcacaag ctgcagcgat cacaacacca acacggccat ttgtatgaat
     2521 ataaccattt acaacgccgt tagcacctgc ttttaaagtt gcaaatcttc ttacaactaa
     2581 gttttctcct atagttgcaa tttgactttt taaatattct tcaaatttta caccattaat
     2641 cgtacttgag tgaagctctt ccacactttg caagctattg ctttgaatat gagctgtagt
     2701 atcttttgtt aaagcgataa actgatcatt ttttgccaca aaatctgttt cggaattaat
     2761 ctcacttaca gttgcgcttg taaaatcatc acttactttt acacttacta aaccttctgc
     2821 agcaagtcta tctgcttttt tagcagcctt acctaaacct ttttctctta aaagttgtac
     2881 tgctttatca aaatctccat tagtttcact caaagcattt ttacaatcca tcatccccgc
     2941 acctgtactt tcgcggagtt cttttaccat tgcagcagta atttcagcca ttattcttgc
     3001 tcctcaccga agtcttcttc gcttatcgct tcatctaaaa cttctttttt ctcttcatcg
     3061 gtgatttctt tttcttcatt tgctaaagct tcgccatctt gttctcttaa agcttttcct
     3121 tcattaatcg cttcagccat ttcttggcag aaaagttgca ctgaacgaat tgcatcatca
     3181 tttcctggaa taggataagt taccaaatca ggatcgcagt ttgtatctag tggagctaca
     3241 acaggaattc ttaatctatt tgcttcttga acagcaattt tctcttttac tgtgtcaata
     3301 acaaaaatca tatcaggttg agttttcata taacgaattc cacctaaata agctaataat
     3361 ttttcttttt ttcttgtaag cattaaagct tcttttttag ttaaaagttt aatacttcca
     3421 tcttcttcca ttttttcaat tacttctaat tttctaattg attggcgaat ggtaccaaaa
     3481 tttgtcatca taccgccaag ccatctatga tttacataag gcataccgca tttttcagcg
     3541 tattctttaa tcgctccacc tgcttgtttt tttgtcccga caaaaagtat agtttttcct
     3601 tcggcagcag cgtcacgaac gatattatag gtatatctaa aatatcttaa agttttttgt
     3661 aaatcaatta cataaatacc ttttctctcg ccaaaaatga attttttcat ctttggattc
     3721 cagcgtcttg tttggtgtcc aaaatgcaca ccgcattcta ataaatctct catactaacc
     3781 atgagtttct ccttataaat ttagctttat tcctccacat cccttaattt acacaagcta
     3841 aaaaggattg atgcgtgtga aatgaagcta agattttatc aaatttaagt ttagttttta
     3901 cttatatatg tagtccttgg taagacttag attattattg atttcttttg tgattaaaaa
     3961 ttgaaacaaa tccacgcttc caacacgaaa agcagaggca caagaacgaa ggtacaaatc
     4021 ccacattctt ataaattttt catcatattt ttcccttacc ttgtccaata cttcgttaaa
     4081 attttcatcc cataaatcta aagtttttgc atagtgcatt cttaaacttt ctgctaaaag
     4141 aagatgaaaa tcccactcac tcatagcact tacaacctct cttaaagaag gtaaatatcc
     4201 tcctggaaaa atatatttat ctatccaagc atttgttttt ccttcaaaca tggctaaaat
     4261 agaatgtaaa agcatagaac ctccaggttt taacacttgt tttactttca tgaaataaag
     4321 tcctaaattc tctttgccta catgttcaaa catacccaca gaaacaactt tatcaaaata
     4381 attttcaaat tctaaatctt gataattttg aagtcttatt tctattttat cttcaagacc
     4441 aagttctttt actctttcct tagctttttt acactgctcc tctgaaatag taattccaac
     4501 aaccttaact ccatactttt gagccgccat aatagaaagc caaccccagc cacaacctat
     4561 atctaaaagc ttttctcctt cttttaaatc aagtttttta agagtatgtt ctattttgtt
     4621 aatttgagct tcataaagag tattattagg ctctttaaaa taagcgcaag aatagctcat
     4681 agtatcatca agccaaagct tataaaaatc attacctata tcataatgac ttttgatatt
     4741 tttactttcc tgtttttggg ctattttact caagatatcc tctgtatttt ttaaaaaacg
     4801 cttatttgaa aaataataca aaactttagc tatttcatca taatcacctt ctatttctag
     4861 tttagactcc atataatgtt ttgcaaaaac taaactcgta tcactaaata attttaaaaa
     4921 aggtattttt tctttgaaaa ttaaagaaaa tttagcaggc tgattaccca catgaaattc
     4981 ttcttgatcc caaaatacaa ttctaaaatt tccataattc cattttgaaa gaataaattt
     5041 aatcatttgt ttttcaagca tgacatactc caactaataa aaattattat ttgatagtat
     5101 ctcttaatta tgtttaaaat ttgataaaat tgaagaaaag atagaatttt tgccacagat
     5161 ataaaatagt ggcaaaaatt ttataatact aatgtaattt agaccaaaca gaacgcttcc
     5221 aacctatagc aaaaatactt aaaattacaa agaatatcat tacataaatt cctgtagttt
     5281 ttctttcttc ttttttgcta tcacccactt gatcaatata agatacaacc ttagcctgtg
     5341 cagcttctgt taaacctact cttggcatag cggttcctgg aagaagtttt tgagtattat
     5401 taataaaatc atgtaaatat tgctcaccac gagatcttat catcatagaa agatcaggtg
     5461 gaacagaacc taaataagtt tttaaatcat tttgatttga tggagtaaaa aagctatcgt
     5521 atttcatatc atgacaacgt ccgcaagcct caataaaagt tgctttatct ttagcaaatt
     5581 ttatatcttt ttccattaaa gctgcttttt gagcactatt ttccatttta gcatattttg
     5641 cctcaacatc tttcttaata gtagcatctt cattggcttc aaatttaaca ctcacatctt
     5701 taagataagc aattacattg gctatatttg catttgtagc ttcttcactt tctcctgaag
     5761 tatctttatt gtaagctgtc ataataaaag catcaccaaa tttatgatct acttttaaag
     5821 caagcgcagg atgcataatc aaagctgcta aaaatttttc atcaaaaata gcaccagctg
     5881 cactgagatc aggcggtatt actcccatag aagaatcagt aatattagcc gctattccat
     5941 cttcttttac accatgacat gcaaaacagt tattttcaaa aaattcttta cctttttttg
     6001 catcaccctt agcaaaatcg atctttgcaa catctgccca aagtgtttca accttgctta
     6061 attcttcttt tgctttttca agttctttgt ttgcactctc tattctttta gcatctcctg
     6121 aagcttgtgc atcttttaga gctaattctt tagcttcaac tatacctttt gcaaaagtag
     6181 tatcttcaac agcaaaatca aaatttgcag gagcaacatg aggcttcatc actgaatgag
     6241 cataaggctc taccccccaa tatacaagtg cagtaaaaac tactacaact aaaaatattt
     6301 ttatttctct cattgtttag ctccttttct ctccataata gtaataaccg gtaaaactac
     6361 aataagtaaa agtaaaaata ctatagaagc gtaaaatcct acccaagcat ttacacctgt
     6421 tggaggtaat tttccataaa ctgttaaaac aattaaatcg ataagcaata tccaaaacca
     6481 aatgaaaaat aaaggtcttt catgagctgg ttttaccaca tcacttctat caagccaagg
     6541 aagcaagaag aaaatcactt gagcaatacc aaatgcagcc aaacctatat caaaagcttt
     6601 aatacctgca atatcaaaga aaaatcctct taaaacttca taactccata agaaatacca
     6661 ctcaggataa atatgagctg gtgttttaag cgcattagct ggatcaaaat taattggatc
     6721 cattgcaaat tcaaatttaa aacagaccaa ataaaagaag aaaatcataa aaaagcttat
     6781 atacataaaa tcttttgata aaaatcctgg ccaaaaagga atcactttag aaccctttgt
     6841 gtcacctgcc atgtattttt cagcctctaa atcaaagtca agttcttcag aaatttcatt
     6901 attaacatga ggaattctta aagaatagaa gtgaaatgct ataatagcaa tgataactat
     6961 aggaagcaag cacacatgaa gcataaaaaa tcttgttaaa gttggatcag aaaccgcata
     7021 atctccacga atccaaatca caagctcagg gccaataaat ggtatccctc caaaaagatt
     7081 agtgattact tgagctgccc aataactcat ttgtccccaa ggaagcatat acccactaaa
     7141 agcttcagca gaaaatacaa caaacaaaag cataccgcta acccaaatca tctcacgacc
     7201 ttttttataa gaaccgtaat aaattcctgt tagcatatgt atgtatataa tcaaaaatac
     7261 aacagaagcg gcaacaccat gcatgtgacg ccaaagccat ccatagtcca cctcttgcat
     7321 aatagtctta ttcacactat caaaagcaag tgcagtatct ggtttataat acatcacaag
     7381 taaaagtcct gtaacaaaaa gcactgcaaa aagagtggtt aaaataaccc ccattgccca
     7441 aagaaagtta atttgctttg gtatccaata ctttaccatt aaaacatcaa gcagtttatg
     7501 taccgcaagt ctttgatcaa gccaatctac aagaccatta gcttttctaa tttgtgccat
     7561 cttaagcctc cgctatcatt tttttatatt caggaccctc ttcacctaaa acaagcttgg
     7621 ttccatcaat tttaaaagga ggaatttcaa gaggctttgg aggaggtcca aagacatttt
     7681 ttccacttgt gtcaaattct ccaccatgac aggcgcattt aaacaattgc tcacttggtt
     7741 ggtaagcagg tatacaacct aaatgcgtac aaagtcctat aaccacagta taagctgcgt
     7801 tatctaccac aacatcacgt ttttcatctt ttggcatact cgcatctttt tttaatataa
     7861 aaataggctt tttacgccat tctatagttc taagctctcc atcttgcatt cctgataaat
     7921 ctactgtagt aaaacctgca gctttgacac ttggaagcgg atcccaagtt tttttcattg
     7981 caacaagcga gaaaacaccg cctacagcag ctacgcttcc aaatgcaaag cccataaagc
     8041 ttcgtctact ctcagatgta gccataactt gctcctttcg attttatttt ttaaccaagt
     8101 taaaagttta tcgaaattaa aataaatttt ttctttgttt aacaagtttt gatatttaga
     8161 caataagagc aaaaagagaa aaaacaagca caggtaaagt tatcaaaaag ccaaatttac
     8221 aatattgcca aaaagaaata ttaatgcctt ttctagccaa aactccaagc caaagcaaag
     8281 ttgctaaaga acctattggc gtaagttttg gacctatatt tacacctaaa agatgtgcat
     8341 aaatcatcaa agaatcaaaa gaaaaattct caaaatattc ttttaatgcc aaatctccga
     8401 ttaaaaccat aggcaaatta ttaaacacag aagatccaaa agctgaaatc aaagccacac
     8461 caaaaattcc actcttatct tgcatcaaaa aagcatagct tttaaccaaa atttcactca
     8521 cacctatttt atgtaaagca aaaaccacca tataaagccc aaaactaaaa agcaaaactc
     8581 cataaggtgc ttcaaaaaga attttaatac tttttttacc ttgaattttt aaaataataa
     8641 gccaaaaaat tcccgcccaa agcaaagcaa aaaaacttat tttaatatta aaaatttcac
     8701 ctataaaaaa actgataaca aaaagaaata aaaatactat gcaaagaaaa aacaatttca
     8761 atgaaatttg ctcttttttg attaatttaa attcaagcct tttaggtaaa actctcacat
     8821 aaagcacaaa aaccgtaact atagtagaaa gcaaaacaaa aaaatttggc aaaaacatat
     8881 ttttagcaaa ttctaaaaat tctatcttaa aataatttgc tgtgatgata ttggttaaat
     8941 ttgaaataac caaagcgttt gaacttgcat cgcataaaaa agaaaggcta agtaaaaaag
     9001 aacttaaaat aaaagcatga tttttacaat ctttaagagt tgaaaataaa gctataataa
     9061 taggtgtaat gattaaaatc gctccatcgt tagcaaaaaa tgcagaaaga aaaaatacaa
     9121 aaatcaacaa aaataacatc attttttttg tactgatata aattttttct tgatttttct
     9181 ctctagaaaa atacaaaatt ttactcgcaa taaaatcaaa aaatcccaaa gcttccaagc
     9241 taaaagaaag gataatcaac ccaaccaaag ttaaagaact atcccaaacc aaagaaaaaa
     9301 caaaacaagc atctttaaaa tctaccaatt gaaaaataaa aacaaaaaaa gcccccaagc
     9361 tagaaaatac ccaaataggt aaattccatg gacgccaaaa aagtaaaact aaagtagata
     9421 aaaaaataaa aaaagcaagc atttaagctt ttttcttttg cattttgata taaatttgca
     9481 aaatatccaa cgctgcagga gtgattccac tgatttgact tgcagcaaaa atggttggag
     9541 gtttatgatg attaagcttt tctacaacct cattactcaa accacttaca cttttaaaat
     9601 caaaattttc aggaatttta agctcactaa gatttttcat tttttctact tgagcttttt
     9661 gcatactaat gtaatgataa tactttgcct catttaaaat ctctcttaag gagtaatgat
     9721 ccatggtttc aaatataggg tcaagttttt ttaatttttc tatatcaaaa cttgctcttg
     9781 caacaatttt ttgaagattg actatagaag aaattttatc ttctcctaaa ctctctaaaa
     9841 aagcattatt ttggttgtta ggcgtaaatt ctttagaaag taaaaattta agtccttttt
     9901 gaagattgtt tgcgatattt tgtatataag taaaatcttg ctcgcttaaa agccctaaat
     9961 catagccata ttttccaagt ctaagtatag cattttcttc ccttaaaagc agtctaaatt
    10021 ccgctcttga agtaaacatt ctataaggtt cttttgtgcc ttttactacc aaatcatcga
    10081 ttaaaactcc tatataagct tcatcacgcc ttaaaatcaa aggctctttc atatctatgc
    10141 ttaagcttgc attgattccc gccataaagc cttgtgctgc agcctcttca taacctgtag
    10201 ttccattaat ctgtcctgca caataaagat ttttaatctt tttaagttct aaagtatgct
    10261 taagttcagt tggctctata tagtcatatt ctatagcata accaaaacgg gttattttag
    10321 cattttcaaa accctctaca gaacgcaaca tttgagtttg tacttcataa ggtaaagaag
    10381 tagaaaaacc attgatataa tactccgtcg catcgatagt ttgaggctct ataaaaagat
    10441 gatggctttc tttgtcgcta aaacgattga tcttatcttc tatagaagga caataccttg
    10501 gccccacacc ttcaatctgt cctgtaaaaa gcggagcacg ataaaaatta ttcttaataa
    10561 tctcatgtgt agttgtatta gtgcgtgcga tataacaagg aagttgagta ggattgaaat
    10621 ttcttgaacg aaaactaaaa gctttaggat ttacatcacc atcttgaatt tcaagcacgc
    10681 taaaatcaat gctttttgca tccactcttg ggcaagttcc tgtttttaaa cgtcccattt
    10741 ttaaacccaa agtttgcaga taatttccta aatttaccga agcaagctcc cctacccttc
    10801 ctgcttgaag tttattttca cctacgtgaa taagtccatt taaaaaagtt cctgttgtta
    10861 ggatgacttt tttggcaaaa tatatatttt ctaaatttgt ttttacgcct ttaacttcat
    10921 cattttctac gattaaaaca ctcgcttgtt cttgagaaat ttctaaattt ggaagtttta
    10981 aaagtttatt acgtgtaatg atacggtatt tatccatatc aatttgtgcc ctacttcctt
    11041 gaacggctac acccttactt tcatttaaaa tgcgaaattg tatccctgct tcatcggtga
    11101 tttcacccat aagaccaccc atggcatcaa gttcttttac caaatgtcct tttgcaagtc
    11161 cacctatggc tggattacaa cttgccgctc ctatttgctc aatcaatgta gttaaaagta
    11221 aggttttttt acccattcta gcagcagcag cacttgcttc aacacctgca tgtccaccac
    11281 ctataacaat gacatcaaac atattttgcc ttgaaaaatg tgaattttta aaagaaagat
    11341 tatataatat ttagacttaa aacaaactcg ttttaagtct aacaaaaatt tatttagctt
    11401 cttggagaga aaagattagc tcattataag ttttatctgc atctttgcag aaatttttaa
    11461 gcatctcaac acccttattt aagccttgtt gctgttctgc tcttaaaaga tcgctataaa
    11521 gactttctat tgtagaaata gcgcttttat ttggcatacg acgaacggaa taatagccta
    11581 tgatattatt attaacatct attgatgggg ttacatttgc aaaaacccaa tagtaattgt
    11641 tatctttggt tttatttttt acgtaagcaa aaatttcttt gccttctttc atataatccc
    11701 ataaatattt aaaaacagtt tttggcatct cttcatgtct tactatgtta tgaggtttat
    11761 ttaaaacttc acccatggta taacctgcat actttaaaaa atcatcattt gcataaacta
    11821 ttttaccttt taaatctgtt ttagaagtaa ttaaactatc ttcttgtaaa aaaatttctc
    11881 ttgacatttt cccaccctct taatttatat ttttaatttt gctaagattt cagcacttct
    11941 ttgctctagt gatttaatat catttacaat cgcatcataa gctttttgat cgatataatc
    12001 ttgacttgat tcttctattg cttttttagc gttatctttt ataaattctt tagctaaatt
    12061 taactcagtt tcagaactaa gctcattaat aacaccttga gctctctcat cttgacaaag
    12121 attagaaatt ggatctacac tttcaagatt gaaattttgg cccccattta aatttaaata
    12181 tatatttgat ttataaagaa tatgatcgat tttaaccaca gacaaaatca atctctttgc
    12241 aaaggatcca aaattaacac caagagcact actattttct tctagacgtt taaaagcttg
    12301 agaaaattta ttaattcttt cttcagattc actaacaatg ttaaaaactt gctcactgcc
    12361 actttggata tttacaaaat cttgttgcat agtctgaatt gcaatagaaa tttcgcttgt
    12421 agatctttga gttctttctg ctaactttct aacttcatca gccacaaccg caaagcccct
    12481 accatgctct cctgcacgcg cagcttcaat agcagcattt aaagctagaa gattggtttg
    12541 atcggctata tcacgtatta cttcaaccac tgaagtgata ttttgtgaat tagccacaaa
    12601 agtttgtact gtctccttgc tcgaatttac aacatccatt aaagaaccca tagcactttg
    12661 aagagaatcc acctctgaac cattttctgt agctgtatga gaaatggcat ccactgtatc
    12721 atatacattt ttcatcatgc taatatcttg atttaatgag ctagaaattt gagacatgtc
    12781 tttattttga tttccaaggc ttaaatccat taaagttctt gataaagcat ttttaaaagt
    12841 agatcttgct gtcacttcta tgtttgctaa agctttattt ataaattcga tattatgagc
    12901 aaaaattcct tttaaacctt caggcaaagc cttacgataa aattcacctt tttgagaaca
    12961 tgaaatagaa gtattaattt cccttaagta agcttctagc ccatcaatag tattattaag
    13021 attatctgct atttcggcta attttttgct ttttgttttt acatagatga ttctattgtc
    13081 gaaattaccc tcctttaact ctctacaaag aaccaaaagt ttatctatca ttatttgctc
    13141 atctttgtgt tgtctaagca aataaatcat taaaacagcg attaaaacaa aaattatcgc
    13201 tccaacaaaa atatgaataa aaatgacacc taaaacaccg ataacactta gaaaaatagt
    13261 taacaataat ccatttttta tcataaattt acccttttta ttgaaaattt tttgaagtca
    13321 taaatcaaaa caatgcttta acttctaggt gaaaattata caataaaaaa gataaaatat
    13381 atcttattta attattttct tgtaagttaa aaataagttc attataagtc attttataag
    13441 aacttacaat atccattaaa gctgaaactc cagcattaat gcccgatttt tgctcttttt
    13501 caagtaaaat tttataaact tcttcaatta tagaaagaga ttttctatta ggtgcacgac
    13561 gaacagaata ataattgatg atatttccat tagtatcaaa tgaagcactt acatttgcaa
    13621 aaacccagta aaaattacca tctttggctt tatttttcac aaatgcaaaa atttcatctc
    13681 ctttttgaat ataatcccaa agacatttaa atacagtgcg tggcatatct tcatgtctta
    13741 ctatattatg agatttatac aaaagttcat caactttata acctgcgtat tttaaaaagt
    13801 cattattggc ataaatgata ttccccttaa gatctgtttt agaagtaatt aaagcatttt
    13861 cagacaaaac tatttctttc ataatttaaa acatcccaat aaaacaaata aatcaaaaat
    13921 agaattatta ccaataacaa acaacaaaaa gcaaactgaa ttgcaaaatt a
//
LOCUS       DAPIWV010000040        13921 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.041, whole genome shotgun sequence.
ACCESSION   DAPIWV010000040 DAPIWV010000000
VERSION     DAPIWV010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13921
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.041"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            247..531
                     /gene="gatC"
                     /locus_tag="RJ272_000850"
     CDS             247..531
                     /gene="gatC"
                     /locus_tag="RJ272_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HDV7381960.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            599..1162
                     /locus_tag="RJ272_000851"
     CDS             599..1162
                     /locus_tag="RJ272_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDV7381961.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSAFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHANEKLQDIVSDLNNTQKGE"
     gene            1164..1637
                     /locus_tag="RJ272_000852"
     CDS             1164..1637
                     /locus_tag="RJ272_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDV7381962.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1638..3143
                     /gene="lysS"
                     /locus_tag="RJ272_000853"
     CDS             1638..3143
                     /gene="lysS"
                     /locus_tag="RJ272_000853"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDV7381963.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMVNFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            3140..4384
                     /locus_tag="RJ272_000854"
     CDS             3140..4384
                     /locus_tag="RJ272_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDV7381964.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLILMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     KNIKQELKKLASNFIIYERAMF"
     gene            4381..4926
                     /locus_tag="RJ272_000855"
     CDS             4381..4926
                     /locus_tag="RJ272_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HDV7381965.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4940..5776
                     /locus_tag="RJ272_000856"
     CDS             4940..5776
                     /locus_tag="RJ272_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HDV7381966.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAVELAKIRKDIAKDAFSFT
                     LK"
     gene            5773..6561
                     /locus_tag="RJ272_000857"
     CDS             5773..6561
                     /locus_tag="RJ272_000857"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDV7381967.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKKRFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6636..7535)
                     /locus_tag="RJ272_000858"
     CDS             complement(6636..7535)
                     /locus_tag="RJ272_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDV7381968.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSNTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7625..8440
                     /locus_tag="RJ272_000859"
     CDS             7625..8440
                     /locus_tag="RJ272_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDV7381969.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8509..9291
                     /locus_tag="RJ272_000860"
     CDS             8509..9291
                     /locus_tag="RJ272_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HDV7381970.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9275..11266
                     /locus_tag="RJ272_000861"
     CDS             9275..11266
                     /locus_tag="RJ272_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HDV7381971.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11259..11984
                     /locus_tag="RJ272_000862"
     CDS             11259..11984
                     /locus_tag="RJ272_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HDV7381972.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            12012..>13921
                     /locus_tag="RJ272_000863"
     CDS             12012..>13921
                     /locus_tag="RJ272_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7381973.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLNTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDSRVDIFSIQNAQICILNFFKSGFISKQDLLKALKILEKISK
                     NTEMLDFISQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNNISA
                     LIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     QLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSIVKLK
                     NIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKI
                     EKLSNLKSDLYEL"
BASE COUNT         4915 a         1640 c         2648 g         4718 t
ORIGIN      
        1 tatacttgcg tataaatctc tctcctttga taaaattttc tataaattgt tcttctgtgt
       61 taagttcatt tttaacagct tttaaattat cttttagtcc caaaatttat ccttgaaaaa
      121 atatttttat ttttgtatag aaaaattatg atattgtatc atataaattg caaaatatcc
      181 taaacaattt aaagcttttt atgatataat tttcaaaatt ttaacttttt tattaaggtt
      241 taagaaatgc aaatagatga gaaattatta agcaagcttg aaaaattaag tgctttacaa
      301 ataacaaaaa acagaaatga aactattgca cagttaagtg aaattgtgaa ttttgttgaa
      361 aaattaaacg aacttgattt agattcccaa gagattactg tgagtactat aaaaggtgga
      421 gctcctttga ggattgatga gataagaaat agcaatgtta ttgatgaggt tttagattgt
      481 gctccaaaaa aacaagaaca tttttttgtt gttcctaaaa tcatagaatg attaacttag
      541 catttagtgc ttatttgtag aataaattta aaacaaaaaa aatcagagag tgattgaaat
      601 gaatttttat tggtttgatg cttttatttt aggatttacc ttgcttttag ggcttaaggg
      661 tattatcaat ggtttgataa aagaaatttt tggacttttg ggtattattg gtggtgtttt
      721 tattgcttca aaatatgcaa ctcaagcagc tgaatttata caaagtgctt tttataagat
      781 agaaaatcaa agcttagctg gatttgctgg atttttggcc atattaatta ttttttggat
      841 agtttgttta ttggtgggta attttctttc taagttgatt aaattaagtg gcctaggttt
      901 tttagatcgt attggtggct ttatatttgg tggagcaaaa atctttttaa tttttgcaat
      961 tttggttttt tgtgtagcaa gaatcgattt tttaaatgat aaattagata attttgctaa
     1021 aaatagctat actttaaatt tacttaaaga aacgggatct tttattatga atcaaccttt
     1081 aacagaaaat agtctagatc atgctaatga aaagttgcaa gatattgtaa gtgatttaaa
     1141 caatactcaa aaaggggagt gatatgctga tagaaaatgt ggaatatgat gttttacttg
     1201 agagatttaa aaaaatatta agacaaggcg gacttaaata tactaagcaa agagaagtgc
     1261 ttttaaaaac tctttatcac agtgatactc attacacacc cgaaagttta tatatggaaa
     1321 tcaaacaagc tgaacctgat ttaaatgtag gaattgcaac tgtttatcgt actttaaatt
     1381 tgcttgaaga agcagaaatg gtaacttcca tttcttttgg ttcggcaggt aaaaaatacg
     1441 agcttgccaa taaacctcac catgatcata tgatatgtaa aaattgcgga aaaattatag
     1501 aatttgaaaa tcctattata gaaagacagc aagccttgat tgcaaaagaa catggtttta
     1561 aacttacagg gcatttgatg cagctttatg gtgtttgtgg tgattgtaat aatcaaaaag
     1621 caaaggtaaa aatataaatg tttgataata ttttagagca gcaaagaata gaaaaagcta
     1681 aagagttaaa aaatttaggg attaatcctt atcctcattt tttagaaaag gaaatgtctt
     1741 taaagacttt taaggataaa ttttcttata ttttagagca agttgaaaaa agagatgaaa
     1801 gtgtcaatgc tgttgttgca ggacgtttga aacttttgcg tatagctggg aaatcaattt
     1861 ttgcaaacat tgaagatgag gatacaaatt tacaaattta ttttagtaaa gatagcgtag
     1921 gcgaagagct ttatacgatt ttaaaaaaga atttagaggt gggtgatatt gttttggtta
     1981 aaggttttcc ttttgtaact aaaacaggtg aatttagttt gcatgcaagc gaagtaaaac
     2041 tcgctacaaa agctattgtt cctttacctg aaaaatatca tggattaaca gatattgagc
     2101 aaagatatcg taaacgttat gttgatatga taatgaatgt cgaagttaga aaagattttt
     2161 tagtgcgttc taaagtggtg agtttaatcc gtcatttttt tgaaaataaa ggctttttag
     2221 aagtagaaac tcctatgatg catccgattg caggtggagc aaacgctaag ccttttgtaa
     2281 cttttcataa ttctttaggc gtagaaagat ttttaagaat tgctccagaa ctttatctta
     2341 aaagacttat agtaggtggt tttgaggcgg tttttgaaat caatcgttgt tttagaaacg
     2401 aaggtatgga tttaactcat aatcccgaat ttacaactat agaattttat tgggcctatc
     2461 ataattataa agatttaatg gatttaaccg aagaactttt tgctttactt ttggataaac
     2521 ttaatttagg aaaaacaata gaatttgatg gaaaaatggt aaatttttcc aaaccttttg
     2581 aaagaataac ctataaagac gcactttgta agtatggtgg tttagatagg gatttaatcg
     2641 aagataagga aaaaattctt actaaattaa aagcagatgg ttttgaagcg aatgaaaagc
     2701 ttgaacttgg acatttgcaa gctgaacttt ttgacaatta tgtggaagaa aaattgatca
     2761 atcctacttt tgtgattgat tttcctattt ccataagtcc tttatcaaga cgtagcgatg
     2821 aggattctca gattgctgag agatttgagt tgtttatttg tggaagagaa ttggcaaatg
     2881 gttttaatga acttaatgat cctcttgatc aatatgagag atttttaaaa caaattgaag
     2941 ctaaaaatgc aggcgatgaa gaggcttgcg aaatggatga agattttgta aatgctttgg
     3001 gttatggaat gcctccaacg gcagggcagg gtataggcat agatagactt gttatgcttt
     3061 tgacgaataa aaaatctatt cgagatgtga tattgtttcc tgcaatgcgt ccattaaaat
     3121 cagaactaaa ggagaaagaa tgagtttaga aatgtttgat aaagaaattt ttgatttgac
     3181 aaacaaagag ttagagcgtc aatgtgaagg tcttgaaatg atagcgagtg aaaatttcac
     3241 tttgcctgaa gtaatggaag ttatgggaag tattttgaca aacaaatacg cagagggtta
     3301 tccgggtaaa agatattatg gtggttgtga atttgttgat gagattgaaa ctctagctat
     3361 tgaaagatgt aaaaaacttt ttaattgtaa atttgctaat gttcagccta attcaggttc
     3421 tcaagctaat caaggtgttt atgcggcttt gattaatcca ggtgataaaa ttttaggaat
     3481 ggatttaagt catggtggac atttaactca tggtgcaaaa gtaagttctt caggtaaaat
     3541 gtacgaaagt tgtttttacg gcgtagaact tgatggaaga attgattatg aaaaagtaag
     3601 agaaattgct aaaaaagaaa agccaaaatt aatagtttgt ggagctagtg cttatgcaag
     3661 agtgattgat tttgctaaat ttagagaaat cgctgatgaa gtaggcgcct atctttttgc
     3721 tgatatagca catattgcag gtcttgttgt agcaggcgaa catccaagtc cttttccaca
     3781 cgctcatgta gtaagttcaa ctacgcataa aactttgcgt ggcccaagag gtggtattat
     3841 tatgacaaat gatgaagagc ttgctaaaaa aattaattct gccatttttc caggtattca
     3901 aggtggtcct ttgatgcatg taattgctgc aaaagcagta ggatttaaat ttaatcttag
     3961 cgatgagtgg aaagtctatg caaaacaagt aagaaccaat gctcaagttt tagctaatgt
     4021 tttaatggat agaaaattta aacttgttag cgatggaacg gataatcacc ttattttaat
     4081 gagtttttta gatcgtgaat ttagtggaaa agatgcagat ttagctcttg gaaatgcagg
     4141 tattactgca aataaaaata ccgttccagg agagattaga agtcctttta tcacaagtgg
     4201 attaagactt ggaactccag cccttactgc cagaggtttt aaagaaaaag aaatggaaat
     4261 tgtgtcaaat tatattgcag atattttaga tgatattaat aatgaaaaat tacaaaagaa
     4321 tattaaacaa gaattaaaaa aacttgcaag taattttatt atttatgaaa gggctatgtt
     4381 ttgatttcac caatggatat gtcgctaatt aaaataattg gcgatcatta ttatataaga
     4441 cgcgataaaa ttgtaaataa aattacacat agaggtcgct tattttttga taaatttgaa
     4501 agagttgatg ctcctttaaa tttaaatgtc atgagagaac acgctgctaa aaaaattgtt
     4561 gtcgctcatg atttaataac aaaagataat aaagtagaaa atattgtctt tgattataat
     4621 ggttttaatg ctgaaagatt ttatcaccgt gcacaactta ttttaagaga agaaggtttt
     4681 ataaatttca cagcctataa gactaaaact ccaggacatt tacatcttta tattcataaa
     4741 ggacatacgg cgttaaacga aggttattct ttagcgtcta aactttcaat gatgtttgca
     4801 agtaaaatgc cagtagaatg gaaggtgttt cctagcatgg atgtacctag ggaatttaat
     4861 attttaatat tgccttatga ggtttatcaa aaagaacgag gaagttcttg gtctaagcat
     4921 atgtaagaaa ggacaaatta tggaaaatca aaaaaatgaa tttgatgata ttattttaga
     4981 aaaaagtaat aaaagtgaaa aagtaaaaaa aattctttta cgagttattg ctttagttat
     5041 tttgttttta gctatcatga tagttatgaa gcttattaat ggtagtggtg atgaaaatac
     5101 gcaaaatcaa agtgtattgc caagtgaacc tatagcaact caagacaata acaatgatac
     5161 ttcttttgaa agtatgccaa ttacagataa tacttcagca gaagatcaat ttgaggcatt
     5221 aagaaaacaa tttcaagatg aacaaaatac aactcaaaat acaacaacct ctagttcaaa
     5281 taacaatgat actacaaatt ttgctatgcc tgatcaagaa gttccagcag aaccaacagc
     5341 aactacttca gaaaatacca ctccacaagc aagtactcct aaacaagaag taacacaaac
     5401 tgcaaaacct aaagaagaag caaaaaaaca aacagctgta aaaaaagaaa aagaaagtgc
     5461 aaaacaaacc cctaaaaaag aacaaaatgc aaatgattta tttaaaaatg ttgatgctaa
     5521 acctgtacat ccaagtggtt tagcatcggg tatttatgtg caaattttct cagtaagtaa
     5581 tttggatcaa aaatcaaaag aacttgcttc tgtaaagcaa aaaggttatg attataaact
     5641 ttataaaact acagttggag gtaaagaaat taccaaggtt ttaataggac catttgaaaa
     5701 ggcagatatt gcagtagaac ttgctaaaat ccgtaaggat attgcaaaag atgctttttc
     5761 ttttacttta aaatgaaatt tttagcagtt ataggcgatc ctatttctca ctctaaatcg
     5821 cctagaatgc ataataatgc tattaaagcc ttagggcttg atagcattta tacacgctat
     5881 catttaagaa atgctaactg tttaagagaa gattttttta aattaggact tagtggagct
     5941 aatattactt tgccttttaa ggaaaaagct ttagatattg ctgatgtgaa ggatgatttt
     6001 gctagaaata ttggctctgc aaatacttta tgcttaaaag aagataaaat ttacgcttat
     6061 aatactgatg ctttaggttt tttagaagct attaaggatt ttgataatat aaaaaaagct
     6121 ttgattttgg gtgctggagg tacagctttg gcgcttgctt atgcattaaa acaaaaaggc
     6181 gtagaagtgt atatagctaa tcgtagtaaa aaaagattta aagatttttt agcttatcca
     6241 acttatcttt ataaaaactt gcaagatttt gactttgatt tggttataaa ttcaacttct
     6301 gctggattaa aagatgaaaa tttaccttgt gatagagagc ttttagatag aattttacct
     6361 aaagctaaat ttgcttttga ggtaatttat ggcagagaaa caccttttta tagattgtgt
     6421 aaagagtatc atttaaaaat taaagatgga cttgatatgc ttttatggca aggagttttt
     6481 gcttttgaac ttttttttga aatacaagat aaaagagaga tgataaaaaa tgcaatgcaa
     6541 caggcattga ttttaaagta gaatgatagt tatttttctt gtataagaaa atcttatttt
     6601 ttgtgtgaga aagtttaatt ttcccacaag ttttatcatt caaatatttc taccccatct
     6661 tgatttttac tttgattatt ttgatttgtt gaagatggat ttgtaggaat attttgtgta
     6721 ggcgtgtttt caattgtatt attttgatta gaatttgttt gaggtaagct ttcttcaaag
     6781 gtagcatcgc catcaaaact attaaaacca ctgtttgtat taggtatagt tttgcctatg
     6841 tctgttgctt ttggtagatt gttataaagt gtatttaatg tatttttata aaaagctaaa
     6901 aaacttttat caatttcaaa agcaggttgc tctaaacctt tattgagttg agttggtacg
     6961 gtagagatag tagttttaaa catattaacc ccatcatcat ttttaatagg atagttaagc
     7021 gcaactaaag aatctagttt agtgttactt gaaagattag ttgaattttg tggattgtgt
     7081 gcatctataa aatctatttt acctttaaaa tttataccta aattggattt tacataatct
     7141 ccactcataa aattgcttgt tttttgtgca tttttttctt ccgtataaat actgattgaa
     7201 cttttaagag tgtagtctgg attagtagta actattttat agccttttag ttgagcgatg
     7261 gttttgatct gctcttctaa attttgtttt aaaagatcaa tttctttttc tatgcgaatt
     7321 ttaagcactg aattttcaaa ataatcagaa taattgttat tttgttctat attaataggc
     7381 tcaagagcaa tgcttactcc agaatcaata ggttcaacct ttgttggaac ttggggttta
     7441 aaatttggca tagaaacatt gacaaaatta ctgcttgtac ccccacaagc tgctaaaatt
     7501 aacatactac tagcaagtaa aatatatttt ttcatttttt acctttattt aatgtgtttg
     7561 tgttaattat agcaagttaa agtttttttg ttatattttt ataaaagaaa attaggaaag
     7621 atatatggaa ttttggcagc atatttattc aaattttaat gttatagctt ttagcatctt
     7681 tggtttaaag gtgcattggt atggcattat gtatgttata gctttgcttt tggctttgct
     7741 tttggctaaa ttttttgtaa gaaaatttca actagacatt aatgaaaaac atttggatag
     7801 ttattttata tgggttgaaa taggggttat tttaggtgca aggcttggat atattttgat
     7861 ttatgatgca aatactatgt attatattac tcatccttgg caaattttta atccttatat
     7921 taatggtgaa tttgtaggta ttcgaggtat gagttatcat ggagcaatta taggattttt
     7981 gatagctact ttattgtttt gtaaaaaata taaaacaaat ccttggattt ttcttgattt
     8041 ggttgcttta agtgttccat tggcttatgt ttttggtcgt ataggaaatt ttttaaatca
     8101 agagcttttt ggtcgcatta caaatgtgcc ttggggaatt tatgttgatg gagtattgcg
     8161 ccatccatcg caactttatg aagcattttt agaaggtatt gttgttttta ttatagttta
     8221 tttagcaaga tttaagcaaa gttttcaagg ggaattgatt cttgtgtatg ctggtgctta
     8281 ttcattggca agatttatat gtgaatttta tcgcgagcct gattttggta taggttttgt
     8341 tttatggggt atgagtatgg ggcaaatttt aagttttata atgtttataa cagctttgtt
     8401 agtttatatt tgtataaagt ttaaaaaagt aaatatttaa tctatcttaa agacttttgt
     8461 aatataatga aatggatttt tttaatttct ttttacaaag gagtaaagat gcgtgagctt
     8521 atcgaaggtt atttgggtaa gagcattgag ggcaaaaaaa gtaaaatgcc tgcgaaatta
     8581 gactttatcc aaagcgcctc agggcttttt ttaggtcttt ttatgtgggt gcatatgctt
     8641 tttgtttcta caattttagt cagtgaggat ttttttaatt ctgtggtaca ttttttagaa
     8701 ttaaaatttg tttacgataa tcctgttatg agttatctta cttcattttt agccgcctgt
     8761 gttttagtgg tttttttcgt tcatgcttta cttgcaatga gaaaatttcc tattaattac
     8821 cgtcagtatc aaatactaag aacacacagt aaaaaaatga atcacagcga tacttcgtta
     8881 tggtgggttc aagcttttac aggttttatt atgtttttct taggttctgc tcatcttatt
     8941 tttattgtaa ccaatgcaga taaaatcagc ggcgatatgt caggagatag ggttgtaagt
     9001 cattttatgt ggctttttta tgctgttctt ttagtctgtg ttgaacttca tggaagtata
     9061 gggctttata gactttgtgt taaatggggt tggtttgaag gaaaaaatgt aaaagaaagt
     9121 cgcaaaaagc ttaaaactgc taaatggata atcagtattt tcttcctagt tttaggtgtg
     9181 ttaagtcttg cagcatttat aaaaataggt tatgaaaact accaaaatca aacccaaact
     9241 actgcgatga taaaaaacta caatggagca aattatgaat atacaatata gtgatgcttt
     9301 agtaataggc ggaggattag caggtcttag agcggctatt gaagtagcaa agagtggcca
     9361 aagtgtaaca cttttaagta tttgtccagt gaagcgttct cactctgcag cggtgcaagg
     9421 aggtatgcag gcaagtttag caaatggggc aaaaggtgag ggtgataatg aagatcttca
     9481 cttcgcagat acagtaaaag gaagtgattg gggctgtgat caagaagtag caagaatgtt
     9541 tgctcaaact gcgccaaaag cagtgcgtga gcttgcggct tggggtgtgc cttggactag
     9601 agttactaaa ggtccaagaa ctgttgtaat caatgcacaa aaaactgtga ttgaagaaaa
     9661 agaagaagcg cacgggctta ttaatgctag agattttggc ggaactaaaa aatggagaac
     9721 ttgctatatc gcagatgcaa cagggcattg tatgctttat ggtgtagcaa atgaagctat
     9781 taaacatcaa gtaaaaatta ttgatagaat ggaagcagta agaattatcc atgatggtaa
     9841 aaaatgctta ggtgtgattg ctagagattt aaccaatgga caactcattg cttatatcgc
     9901 aagaggaact atgatagcaa cagggggcta tggtagaatt tataaacaaa ctacaaatgc
     9961 ggtaatttgt gaaggaacag gtgctgctat cgctcttgaa acgggacttt gtagactttc
    10021 aaatatggaa gcagtgcaat ttcacccaac tcctattgta ccaagcggta ttttgcttac
    10081 tgagggctgt cgtggtgatg gtggaatttt acgtgacgtg gatggatatc gttttatgcc
    10141 tgattatgaa ccagagaaaa aagaacttgc aagccgtgat gtggtaagtc gtagaatgat
    10201 ggagcatatt cgcaaaggta aaggtgtaaa aagtccttat ggggatcatt tatggcttga
    10261 tatttctata ttgggtcgtg ctcatgtgga aaaaaatctc cgcgatgtac aagatatttg
    10321 caaaactttc aatggtattg atccagcaga tgaaggtcca aaaggttggg cgccagttct
    10381 tccaatgcag cattattcta tgggtggaat tagaactaaa ccaacaggtg aaagtcaatg
    10441 gttaaacgga ctttttgctt gtggagaagc agcttgctgg gatatgcacg gatttaatcg
    10501 tttaggtgga aattcatgtg ctgaaaccgt tgtagcaggt atgatagtgg gagattattt
    10561 tgcagattat tgtaaaaata atggtgaagt aattgacaca aatgtagtaa aagacttctt
    10621 aactaaagag tatcaatatt taaaatcttt agtagataaa gagggtaaac ataatgtttt
    10681 tgaaatcaaa aatagaatga aagaaatcat gtgggataag gtagccatct ttagaacagg
    10741 tgaaggtttg aaagaagcag tagatgaact tgaaaaactt tataaagatt ctcaagatgt
    10801 taaagtacat tgtaaagaac ttgattgtgc aaatccagag cttgaagaag cgtatagagt
    10861 accaagaatg ttaaaaatag cactttgtgt agcttatgga gcgcttttaa gaacagaaag
    10921 tcgtggggcg cattataggg aagattatcc aaaaagagat gatttaaatt ggatgaaaag
    10981 aaccaatact ttttgggtag aaggcgaaac cttaccacgc atagaatacg aagagcttga
    11041 tattatgaaa atggaaattc caccagcatt ccgtggatac ggagccaaag gaaatattat
    11101 agaaaatcct ttaagtgaaa aacgccaagc tgaagtggat gcaatacgtg aaaaaatgga
    11161 agctgaaggc aaaggtcgtt atgaaattca aaacgcttta atgccttatg aattacaagc
    11221 taaatataaa gcaccaaacc aaagaatagg agttgattat gagtagaaaa ttgacaataa
    11281 aggcatttaa atataatcct ttaagcaaaa tttctaaacc acattttgtg acttacgagc
    11341 ttgaagaaac tccttttatg acggtttttg tatgtttgac tttgattcgt gaaaaaatgg
    11401 atgcggatct gagttttgac tttgtttgtc gtgcagggat ttgtggatct tgtgcgatga
    11461 tgattaatgg agtgccaaaa cttgcttgta aaactttgac taaagattat cctgatggag
    11521 tgatagagct tatgcctatg cctgcattta gacatattaa agatttaagc gtgaatacag
    11581 gagagtggtt tgaagacatg tgtaaacgcg ttgaaagctg ggtgcataac gaaaaagaaa
    11641 ctgatatttc taaacttgaa gaacgtattg agccggaggt tgcggatgaa acttttgaac
    11701 ttgatcgttg tatagagtgt ggaatttgtg tagcttcttg tgcaactaaa cttatgcgtc
    11761 caaatttcat agctgctaca ggacttttaa gaacagctag atatttacaa gatccgcatg
    11821 accatagaag tgtggaagat ttttatgaat tagtgggcga tgatgatggt gtttttggtt
    11881 gtatgtcatt gcttgcttgc gaagataatt gtcctaaaga attaccttta caaagtaaaa
    11941 tcgcttacat gagaagacaa cttgtcgctc aaagaaataa ataaatcttt ccccttttta
    12001 aggggaagat tatgaaagaa ttattccaaa aaatttggca aaatgaactt caatttttaa
    12061 attttgatgc taaatttcaa gataaaaaca aacttaatac ggccgagtgc gcgattattt
    12121 taagtgtcaa taaagacaat tatgaaagat attttctctt aaaagaattt caagagcttt
    12181 gcaaaaaaat tgattcaaga gtggatattt ttagtataca aaatgctcaa atttgtattt
    12241 taaatttttt taaatcaggt tttatttcaa agcaagattt gcttaaggct ctaaaaattt
    12301 tagaaaaaat ttcaaaaaat accgaaatgc ttgattttat ttcacaagaa aaagttcaaa
    12361 gtatagatca aaaagcttta tttcaaaatg attttaaaga attaaacacc attaatttag
    12421 agcttcaaaa gctaagtttt gatgaaaatt taaaatcaag acttcaaaaa actttggaaa
    12481 aatttcaaaa tttagagttt aatatagcca tcactggcgt gatgaatgca ggaaaatcaa
    12541 gccttttaaa tgctctttta aaagaagatt ttttaggcgt ttcaaacata cctgaaacag
    12601 ctaatttaac agtattaagt tatggtaaga gcgaagaagc aaagatatat ttttgggata
    12661 agaaagaatg gcaaaatata cttgaaagtt cgcactttaa tgcagattta aaagaattta
    12721 ttgataagct ggataagagt gtaaatatag aggattttat caaggataaa cctttaatac
    12781 aaaatatcgc actttgtgaa cttaaaaatt tcagttcagc taaaaataac atttcagctt
    12841 taattaaaaa aatagaaatt aaaagtcatt tagaattttt aaaaaataat atttccatag
    12901 ttgatactcc aggacttgat gatgttgtag ttcaaagaga aattgttaca aatgagtatc
    12961 ttagagaaag tgatttttta attcatttaa tgaatgcttc tcaaagcttg actcaaaaag
    13021 atgcagactt tttggtgcat tgtcttttaa attcaaggct gagtaagttt ttaattgttt
    13081 taactaaagc ggatttgtta agcaaaaagg atttagaaga agtcattgtt tataccaaag
    13141 aaagcttaaa atcaagactt gtggatttag atgaaaattt ggtggaaaag attgattttt
    13201 tatgtgtgag tgctaaaatg gcaagtgatt tttataaggg tttagcacct aaggaaagtt
    13261 tgcaaaaaag tggtatgcaa gaatttgaaa actatctttt taacgagctt tatgcaggag
    13321 aaaaaagcaa gattgcctta agagcttaca aaaaagaatt acagttggaa cttaaaaata
    13381 ttctaagcaa atatgaaatg caaaatcgtc ttattaagga gaataaacaa ggtgtaagtg
    13441 aagaaaatca aaagctttta cttgaacttc aaaagcaaaa tatcttatta aaagaagcac
    13501 aagatgaaat ttcaaattcc attgtaaaac ttaaaaatat agataatggt atagataatc
    13561 ttgttttact tttggctaaa aaattaaaag aacgcttgat agatgagttt aaatatttga
    13621 aaaataatgc acaaaagctt aatctttctc gtattttaaa tatagttgat attaccacaa
    13681 aagatgggat taatgatatt ttaagagaaa ttaaatttga aaatattaaa aaaatcgagg
    13741 agcttaaaac aaatttatct ttaaaatatg attttttaaa agatgatttt gataatggtt
    13801 ttgaaggttt taaagatgga atttcaaaaa atatagatag tatttttcaa agcgaaaaat
    13861 ttgcactttt aagattgaaa attgaaaaat taagcaatct aaaatcagat ttatatgagc
    13921 t
//
LOCUS       DAPIWV010000041        13827 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.042, whole genome shotgun sequence.
ACCESSION   DAPIWV010000041 DAPIWV010000000
VERSION     DAPIWV010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.042"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..1188
                     /locus_tag="RJ272_000864"
     CDS             <1..1188
                     /locus_tag="RJ272_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HDV7381974.1"
                     /translation="VSFIFYFWKKIEILNFILLGILSFCTALHYYFLSQDFPIFTSSL
                     IDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLLILIESDKALANILL
                     TLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSLKIRKKNISKKQILD
                     INYRKNEAKTSLINRYFSSVFISCVISFCIVLYFFMVSSKPLTIDEPKEILPDKNGKF
                     IFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFDACMICGDMGYIKKD
                     GQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDVIAGSNYFSQIKEIE
                     VQDPVSKTKVINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKYVEENEAQFLIQRRN
                     DVG"
     gene            1175..2467
                     /locus_tag="RJ272_000865"
     CDS             1175..2467
                     /locus_tag="RJ272_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7381975.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            2457..3575
                     /locus_tag="RJ272_000866"
     CDS             2457..3575
                     /locus_tag="RJ272_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7381976.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            3572..4225
                     /locus_tag="RJ272_000867"
     CDS             3572..4225
                     /locus_tag="RJ272_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7381977.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            4222..4710
                     /locus_tag="RJ272_000868"
     CDS             4222..4710
                     /locus_tag="RJ272_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7381978.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            4671..5174
                     /gene="traF"
                     /locus_tag="RJ272_000869"
     CDS             4671..5174
                     /gene="traF"
                     /locus_tag="RJ272_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HDV7381979.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(5184..5621)
                     /locus_tag="RJ272_000870"
     CDS             complement(5184..5621)
                     /locus_tag="RJ272_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDV7381980.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SALGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(5920..6336)
                     /locus_tag="RJ272_000871"
     CDS             complement(5920..6336)
                     /locus_tag="RJ272_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381981.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            complement(6511..6595)
                     /locus_tag="RJ272_000872"
     tRNA            complement(6511..6595)
                     /locus_tag="RJ272_000872"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6559..6561),aa:Leu,seq:tag)
     gene            complement(6600..6676)
                     /locus_tag="RJ272_000873"
     tRNA            complement(6600..6676)
                     /locus_tag="RJ272_000873"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6640..6642),aa:Arg,seq:tct)
     gene            complement(6691..6767)
                     /locus_tag="RJ272_000874"
     tRNA            complement(6691..6767)
                     /locus_tag="RJ272_000874"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6731..6733),aa:Arg,seq:tcg)
     gene            complement(6771..6847)
                     /locus_tag="RJ272_000875"
     tRNA            complement(6771..6847)
                     /locus_tag="RJ272_000875"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6811..6813),aa:His,seq:gtg)
     gene            complement(6872..6949)
                     /locus_tag="RJ272_000876"
     tRNA            complement(6872..6949)
                     /locus_tag="RJ272_000876"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6912..6914),aa:Pro,seq:tgg)
     gene            complement(6992..7840)
                     /locus_tag="RJ272_000877"
     CDS             complement(6992..7840)
                     /locus_tag="RJ272_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDV7381982.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(7840..8502)
                     /gene="cgpA"
                     /locus_tag="RJ272_000878"
     CDS             complement(7840..8502)
                     /gene="cgpA"
                     /locus_tag="RJ272_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HDV7381983.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(8492..8695)
                     /locus_tag="RJ272_000879"
     CDS             complement(8492..8695)
                     /locus_tag="RJ272_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381984.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(8761..10005)
                     /gene="eno"
                     /locus_tag="RJ272_000880"
     CDS             complement(8761..10005)
                     /gene="eno"
                     /locus_tag="RJ272_000880"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDV7381985.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            complement(10005..11036)
                     /gene="recA"
                     /locus_tag="RJ272_000881"
     CDS             complement(10005..11036)
                     /gene="recA"
                     /locus_tag="RJ272_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDV7381986.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            11142..12002
                     /locus_tag="RJ272_000882"
     CDS             11142..12002
                     /locus_tag="RJ272_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HDV7381987.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILEFDQSLCVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVNEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            12014..12283
                     /gene="fliQ"
                     /locus_tag="RJ272_000883"
     CDS             12014..12283
                     /gene="fliQ"
                     /locus_tag="RJ272_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HDV7381988.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            12280..13056
                     /locus_tag="RJ272_000884"
     CDS             12280..13056
                     /locus_tag="RJ272_000884"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDV7381989.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDRNKDFIHLRIGCKTKSSKIYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
     gene            complement(13064..13822)
                     /locus_tag="RJ272_000885"
     CDS             complement(13064..13822)
                     /locus_tag="RJ272_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381990.1"
                     /translation="MRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDLNQ
                     NVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDKEF
                     STLFAKNLIQSLRLDWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAKMY
                     AKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAKLNLIL
                     KDQDTKQNYQDIVNQMPKMLASVIDNEIKKLKIY"
BASE COUNT         4620 a         2289 c         2094 g         4824 t
ORIGIN      
        1 gtaagcttta tattttattt ttggaaaaaa attgaaattt taaattttat tttattggga
       61 attttaagtt tttgcaccgc tttgcattat tattttttaa gtcaagattt ccctattttt
      121 actagctctt taatcgatag cgaaggtata agttctttag gttttattgc tttagccttg
      181 cttgtttgta ttttgatttt cttcttttta aaatggcaaa aaaattttaa tcaaaaaaca
      241 agctttatgc tgtttttact gcttatcctt atagaaagcg ataaagctct agccaatatc
      301 ttgcttactt taatgcgaaa ttccatcata gaaactcatg cttttttggt gagttttgta
      361 ggaaaaagta attattttgg tgtttttgga atttatgttt atttaatttt catcactttt
      421 ttagcattct taagcttaaa aattcgcaaa aaaaatataa gcaaaaaaca aattttagat
      481 ataaattatc gcaaaaacga agctaaaaca agtcttatta atcgctattt ttccagtgtt
      541 tttatctcct gtgttataag tttttgcatt gttttatact tttttatggt aagctctaag
      601 cctttaacca tagatgagcc taaagaaatt ttacccgata agaatggcaa atttatcttt
      661 gatatagctc ttttaaggga taacaaactc caccgctttg cttatatcag tgctgaaggc
      721 aaagtgataa ggttttttct tatcaacaaa agagaagata aggattctcc tgtagctgtt
      781 tttgatgctt gtatgatttg tggagatatg ggctatatca aaaaagatgg acaactcatt
      841 tgcatttctt gcaatgtgcg tattttcttg ccaagtgtag gtaaaagcgg gggttgcaat
      901 cctatcccac tcaaatacga atacgatggt aaaaaaatca ccatagatgt taaagatgta
      961 atagcaggat ctaattattt tagtcaaatc aaagaaattg aagtgcaaga tcctgtatca
     1021 aaaacaaagg ttataaacac ccaagctcct ttttcttata gctataaagg gattacttat
     1081 tatttttcaa atcaaaacaa ctatgaagaa tttaaaaaag atcctacaaa atatgtagaa
     1141 gaaaacgaag cccaattttt aatccaaagg agaaatgatg ttggctaaaa tgatttttaa
     1201 ctctatattt aaaaacaaaa ttcaaaaatt tttagccttt cttacttgtt ttttagccac
     1261 gcttttgctc tctactatgc taaatattac cctaagtata ggtgatgaag taactaaaca
     1321 actcaaaagc tatggctcta atatccttgt tttacccaaa ggctcaagcc ttagtataga
     1381 aataggtaat gaactttatg aacccttaaa aaacaaaaac tatctagaag aaaaaaattt
     1441 atatatgatt aaagacattt attggcgtaa caacatcacc gcacttgctc cttttttgga
     1501 aggtaaaatc acaattgaaa actcccaaca aaaagcactt atttatggta cttattttca
     1561 aaaagccata aaaattaaag atgatgatga ttttatcaca ggtataaaaa gtctttatcc
     1621 ttatttagca gtgcaaggag aatgggcaaa agatgatagt aatgaaatca tgctaggcga
     1681 agactttgct aaaaacaata aactaaaatt aggagatact atcaaactca taggagaaaa
     1741 caatcaaagc aaagaagcaa aaatcgtagg cattttactt catgccaatc ctaaaatgtc
     1801 aaataaaatc atcgctcctt taaatttagc tcaagattta ctcaacaaac aagggcttta
     1861 ctcaagtgca gaagtaagag cttttaccat acctgaatca gccctttctg aaaaagtacg
     1921 tcgcatgggc gaagaaaaat tagatcagtt agaatatgac aaatggtatt gctcagccta
     1981 tgtaggctca atcgctagtc aaattagcga tggcttacca ggtgctgatg caaaagctct
     2041 aaatgctata agcgatgctc aaagcttggt ggttaaaaag atccaatcct taatgggcat
     2101 tacttgtatt atttgtctta ttgttgcaag cattgcgatt tcaagtctaa tgagttctga
     2161 aattcatcgc agaaagaaag aaataggact tttaaaagta cttggtgcta atacttttca
     2221 aatttatctc atctttgcta gtgaaaattt aatcgtagct ttatttgctg ctttatttgg
     2281 ctttattttt ggcacagcac tttctcaaat catcagtctt agtatttttg gatattttat
     2341 tgatatagcc tttatagctt tacctttaag ctttattttt gcaggactta ttgccttact
     2401 tggttgcttg cttcctataa aaaatatcac acaactttca gctgcaggag tgctttatgg
     2461 tagataagtt tttcctcaat gagcttttta aaagcattag cttttcttat caaagacttt
     2521 ttattatagt tttaagtgtt tttataggag cacttacttg ctcagctttt ttaaatattt
     2581 attttgatat cgacatcaaa ctttctaaag aattaaaagc ttatggagca aatgtaatga
     2641 taagtcccaa gcaggatgaa aattttatct ccaatactga gtatgaaaaa ataaaagaaa
     2701 atttaaaggc tagagcttta actccttttt tgtatgattt tttaaattta ggcagtacaa
     2761 gcggggtggt tttaggcact gattttaggg ctttaaaaat cactaaacct tttttagaag
     2821 ttaaagaagg aagcttttct ctaaatgatt ttgatgaaaa ttcagccttt ttaggagtta
     2881 atttagccaa gcaactaggc ctaaaagcag gcaatgaact tcaaatttat aatccaaaca
     2941 acggaaaaag cataaaactt accataaaag gcatactttc aagcaatgat gaatttgata
     3001 gcattgtttt agccccttta agcgtggtgc aaaatttaag cgatagagcc ggtattaact
     3061 atgctaatgc tgtagtttat ggaaattttg atgaagttaa agccaaaaca caagcaatca
     3121 gcaatgaatt catcgatgca aaacctatat cttcagtatc cttaagtgaa ggtttagtgc
     3181 ttggaaaaat caaagcttta atgtttttaa tcatacttgt ggtattgatc atagttacta
     3241 ctagtgttaa tacaacttta agttctatta tattttctcg caaaaaagaa atcgcactgc
     3301 gtttagcctt gggtgcgaaa aaaagtgaaa tttttaaact ttttgctagt gaatgcttta
     3361 tagtaagttt ttttgctagt ttaatcggag ctttttgtgg gatattttta gccaatgtct
     3421 ttggttattt aatttttaat tctagtattg attttagatt tatagctgtt tttatagcct
     3481 taatcatttc tttgattttt gcctttttgg ctgcattttt tcctataaaa agagcattaa
     3541 aaatcaatgt gtgtgaaaat ttgaaaggtg aatgatgaaa aaagaactta ttaaaataaa
     3601 caatttaaat aaagaatttg gcaaagttaa agccttaaac aatatcaact taagcgtcta
     3661 tgaaggagaa tggcttgcca tcatgggtcc atcaggaagt ggaaaatcaa cacttttaaa
     3721 catactatcg ctcatggata ctccaagctc tggagagtat atcttggata atgaaaacct
     3781 agagcaaatg gatgaagagc aaaaaatcac cttgcgtcgt gaaaaaatag ggcttgtctt
     3841 tcaacaattt catcttatcc cctatcttaa cgccttagaa aatgttatgc tctctcagta
     3901 ttatcactca agtgtagatg aagaagatgc caaaatggtt cttgaaaaag taggactttc
     3961 gcatagactc actcatttac ctagccaatt aagtggcgga gaacaacaaa gagtttgtat
     4021 agcaagagct ttaatcaaca acccagagct tttactcgca gatgaaccca caggaaattt
     4081 agatgaagcc aatgaacaaa tcgttcttca aaccttgcaa aaattaaaaa atgaaggtaa
     4141 aaccatagtt ttaatcacac acaatcctga tttagccaaa ttcgcagatc gaacccttat
     4201 cttacaacat ggggtgttaa aatgaaaaaa agccttttaa tcttaagtat tttgttttta
     4261 ctcaatgctt gttcttttga aaattcaaaa gatactggaa aagttggaga aaaaagcgct
     4321 gaaatttcag ctaaagatac tttaggaaaa gctgtaaaac ttgctgatga taatacaagt
     4381 ttaaaagtct tagtcttttt tcaaaatggc tgcccttctt gcttaaaaga actcccttct
     4441 ttagatgaat tcatacaaaa tcaccccaat aaaatcagtg tttatgctat aaattccatc
     4501 gataatgcca atgtggttaa ggttttagcc gaacaatttg actttaaaaa tgtaaaagtt
     4561 ttaaaagacg atcttaaaat caccaatgat cgttacgctg tgtttgcaac ccctactacc
     4621 atcatcatta aagatgggat gataaaagat agaattttag gagaaaaacc atgggaattt
     4681 ttcgaatcca agcttatttc tttgctttaa tcatagcttt attttttgta gcttgtgata
     4741 gtggagaaaa ttttaaagct ttaaatagcg ataaaaccta taattttgcc tacaatggtt
     4801 ttgaaaaaag cctaaaacta aatgataaag cacaaaattt tgccttagta tttttcacaa
     4861 aagattgcgg agtttgcaaa gaacaaattc ctattttaca gaatttggct aaaaattatg
     4921 attttaatat ctttgtggtt ttaggcgatg caaacgatgc aaacgatgca aaagcttggg
     4981 ctgatgaaaa aggtttatct aatttagcaa tgttttatga aaaaagagca gctaaatacc
     5041 tttcaagtgc cattggggaa atatatggag tacctgtgct tagttttttc aaagaaggaa
     5101 aaatggatga aaaattcata ggcttaactc cttatagcat acttgaaaaa gaaatcaaaa
     5161 aagtaaaaag ctaaaaattt actttaaagc tttttatccc ctataaaata tccataaagc
     5221 tcatagcttc catctttttt catcaaaatt acaggatatt tttcactata accttgttcc
     5281 attcctggac ttccttgcgg catgccaaga gctgaaattc ctataacatc tttaggtttg
     5341 ttttcaagca accatgctat agcactttca ggaacatgcc cttcaatagc atagccttca
     5401 atcacacctg tatggcaact ttgatactca tcttttatac ccattttttc tttgatttta
     5461 agaaaatcat tggttttatg aacactaacc tcataaccct tagctttcat ataatcagcc
     5521 caaagatcac aacagccaca agtaggactt tcataaattt gtatttcctt agcctgcgta
     5581 agagtgagta aaaaaagaat ggttaaaatt gtttttttca taattgctat cctaagtaaa
     5641 aaatatataa taatactttt ataaagttaa tatcatcaca tttttaacac taaaaatgaa
     5701 tttacaaaaa tttaatcaag aaaagacttt taatgagtgt tgattttgtc tttgcagcaa
     5761 agatataaaa gataaaacga tttaaaaaac tagaaatttt taacttaaaa agcttaaaat
     5821 ttagatatat tttatactta ctatgttttt tcatagtatg ttctaatggt ggatttccgc
     5881 caagagtgaa aactcaaggc ggatttttat ttgcaatatt tacttaatag aataattatg
     5941 atcagctgtg cctccacata aatacccctt cttatcaaaa cttgcaattt cgcaagaaag
     6001 agtagataat ctagctcttt taccatcact agttaatata agaacttgtt tataataaac
     6061 ataattgctt ttatctgaat attctttttg tattatagct tgagttgaat tataagttct
     6121 tggatcaact tttgcaacaa tatctgcttc ataaaaagtt gcctttttaa aaagtggctc
     6181 agttaaagtt gattttatac tctcttggaa atatttgttt tgcatttcgc ttgctgaaac
     6241 tggaactaaa tcttttttat tgataactat caaatctgca aatgctgaca catttaaagc
     6301 aactaaaact gctaaaacta aacctaattt tttcatttta tctccttgaa ttgaattttg
     6361 tatatttgaa ttatttttca aatcttttgc aagataattt ttaaatttat ctaaattaaa
     6421 tttgcatttt atctaacaat cataagaaat tttaaaatga aataaaaatt tatgagaaat
     6481 caactcttat ttgaaaatga taaaagtaag tggtgcggat gaaaggactt gaaccttcac
     6541 gcattgctgc accagatcct aagtctggcg tgtctgccaa tttcaccaca tccgcaaagt
     6601 ggtacgccca agaggattcg aacctctgac ctacggctta gaaggccgtt gctctatcca
     6661 gctgagctat gaacgcatat aaaatcttgg tggtgcgccc gataggaatc gaacccataa
     6721 cctacagatc cgaagtctgt cgctctatcc agttgagcta cgagcgctag tggggtgagt
     6781 gatgggaatt gaacccacga ccctcaggac cacaatctga tgctctaacc gactgagcta
     6841 cactcaccat tttgtataaa tttataaaaa atggtcgggg tgaaaggatt cgaaccttcg
     6901 gccccttggt cccaaaccaa gtgcgctaac cagactgcgc tacaccccga ataaataaaa
     6961 ggaaatattt tatcacaaaa taattttaaa gtcaaggatt ttcatctctt attcttaaaa
     7021 acaccggaaa gcgaggtaag gaatttttgg tcaatccatt aaatttataa gtcacaatac
     7081 taccaatttt tggaggattt tttctatctt catcttttaa accactgcct attttaatga
     7141 tttgtccatt aggcatttta caaagtaagg cacctacttg attttcaaat ttacccttgc
     7201 ccttgcgaaa tcctaccaac tcacattctg catcatcata gggttttaat ttcgtggcat
     7261 ttttacttct gcctttttca taaggactta aatttttgcg tataacaata ccttcacctt
     7321 gattttttat aatgctttcg taaaattgat ttaaattatt ttgattttca actggaattt
     7381 gagaaataat ttttatatag gcactaggat atttttgcaa atactcttct aaaacagcca
     7441 aacgattttt aagagtgcaa gtagaaattt gaaattcttc gcaagcattt ggtacatcaa
     7501 aaatattata agttacttcc ttccataagg tcaaattgct atcgccacta cgaattaaag
     7561 ctgaaatttc atcaaattta tttcttgcta tccaaagctc accatcaata gcaaaaggag
     7621 ggaaattttt tgtaaaaaag tcaggagttt ttattttgta gttttggcga gtttttagat
     7681 atttcccatc ccaaattcca cgcactccat caagtttttc gctcatcaaa taagcattaa
     7741 aatctttaga gttaaaatct tgcttatcga atttgctaag aagtaaaatt tcattagcaa
     7801 aaactaaaca agcacaacat attaaaaaaa caaacctcat caaagcagat taatcatata
     7861 tccagttgca tctttttgaa tattataatt ataagttcca tcaagatata ttacaagtcg
     7921 ataatatcct ttatgagatc caaagtctat gcgtttaaaa atagaattgc taaggcgtat
     7981 gttttttgta gggctaatca ttttagatct aaaatctata acgattttac ttggatttcc
     8041 tactgaaaaa tctgtaatca tttcatcact agtgttaagt tttattttat ttttataaac
     8101 cgcataagaa ataaaatcat aaatctttgc aacctgtaaa ggtatttcaa cattggctgt
     8161 tgagtttgat tcttgtttag agctattttt ttcaggtata gtaactgaaa catcaagtac
     8221 ttttgaagga tcagggcttt taaatcttga tatagtataa gtatcgtgcc aatcaatact
     8281 tttattgaca tctaaatcga tcttatcttc acttccgtct aaattgatat aattaaaagt
     8341 gatgcttttt aaaattcttg cactagaatt aaatttaact tcctcttttt gaaattcagg
     8401 tggagcaacc aaggttatat tttgatctgt cttgaaagga ttttcatcag catataaaag
     8461 agaggtaaaa ataaaaaata ttgccaaaat tctagttttc atttgggtat aatcctttta
     8521 attcaaaata atctttttgt gctttagcat tttgttcttt gagcaaaata atctttttat
     8581 taagctcttc tttggtattt tctaagctta ataaagtatc taaagaatac tgcccaaaaa
     8641 acatattgcc aaaataaatc gctccaatta caacaagaaa agcccaaaaa atcattttta
     8701 taacatgggt ataaaaactt ttttttcttg tgctttcgtc gtattcttta agtaaatcgc
     8761 tcagagcttt tctcctaaat attcatcgct ttcaaattca atttcaagta agcgattgta
     8821 ttttgcggtt ctttcgcctc ttgctagggc tcctgtttta atttgtcctg tatttaaagc
     8881 cacagcaaaa tccgctataa aagcatcttc actttcgccg cttctatgac tcatcacaca
     8941 tttatagtta tttctttgcg ctaaacgcac agttctcata gtttgggtaa tagttccgat
     9001 ttgatttggt ttgataagta cagcatttgc catttttttg atgatacctt ctcttaaaat
     9061 atcttcattg gtcacaaaca aatcatcgcc tacaagctga attttattgc ctaatttttc
     9121 agtcagcttg atccagcctt caaagtcatt ttcagctaag ccatcttcga tactgcaaat
     9181 tggatatttt gcacaaagtt ctacatagcg ttcgatcaaa gcctcgcttg aaaaagcctt
     9241 gccttccatg tggtatttac catctttgaa aaattctgta cttgccacat caagagcaat
     9301 ttttacacga ttttcataac ctgctttttt gatacaagtc attaaaagat cgataggttc
     9361 tgtgttgtta gctaaatttg gagcaaaacc gccttcatca cctaaagccg tagaatgtcc
     9421 agaatttgcg agttcttttt ttaatatcgc ataaatttca caaactgaac gcaaagcttc
     9481 tttaaagcta gtaaaaccaa aaggcatgat cataaattct tgaaaatcta cattgttgtt
     9541 tgcatgagca ccgccattta tgatattaca cattggcacg ggtaaaatgc tcgcatttgc
     9601 accacctaag tagcgatata aaggcattcc caaagcagct gcagccgcac gagctgttgc
     9661 catagatacg cctaaagtcg catttgcacc taaatttgag taattatttg ttccatcgag
     9721 ctcacgcaaa gtatcatcaa gttgagtttg attaaaagca tctagtccta aaatttcatc
     9781 tgcaatggtc tcattgacat ttgcaacagc ttttaaaacg ccttttccgc caaatctttc
     9841 atcattatca cgcaattcta aggcttcttt tgaacctgta cttgcaccac ttggaactat
     9901 ggccgcacct acacttccat cgcttagcgt aacttcggct tttacggttg gatttcctct
     9961 actatcaaga acttcatagg ctctaacatc ttcaattact aacattattc ttctccttcg
    10021 tcatcttcgc taccgctgat cataccttct attcccatag aattttgaat tgcttttgtg
    10081 atttcatctg caatttcagg gttttctttt aagaaagctt ttgaattttc tctaccttgt
    10141 ccaagttttt tatctttata agaaaaccac gcaccacttt tatctacgat atcaagtttt
    10201 acaccataat cgatcaattc accttcacgg cttaaaccct ctccaaacat cacatcaaat
    10261 tcagcttgtc tgaatggagg agcaacttta tttttaacta cttttacttt aacgcggttt
    10321 cctataggtt cttcgttttg ttttaaggtt gctacttttc taacatctaa acgcacagaa
    10381 gcataaaatt ttaatgcatt tccacctgtt gtggtttcag gagtaccata acccatagca
    10441 ccgattttca tacgaatttg gttgataaaa attactgtgg tattcatttt atgaactata
    10501 cctgtaagtt ttcttagagc ttgagacata agtcttgctt gaagtcctac atgttgatcg
    10561 cccatatcgc cttcaatttc tgcttttggg gtaagcgctg caacgctatc tactacgata
    10621 agatctactg cgccacttct tgctatagtt tctacaattt ctaaggcttg ttctccaaaa
    10681 tcaggctgag aaacatacaa atcatctgta tttacaccca aatttttagc atattttaca
    10741 tcaagcgcat gttctgcatc gataaaagca caaactccac ctgctttttg gcattctgcg
    10801 ataatatgta aagttagagt ggttttacct gaactttcag gtccataaat ttctataatt
    10861 cttccttttg gaacaccgcc tatacctaaa gcaagatcaa gcccaactga acctgtgcct
    10921 atgctatcga tttgctcgac ttctttatcc cctagtctta aaatagtgcc ttttccaaag
    10981 gttttatcta aactttttag ggcagcgtct agagattttc ttttattatc atccataact
    11041 ttccttaaaa attctaaatt tttagttaga attctaacaa aataaaatta aataatgatt
    11101 tattttgcta gaattaaagc aaagatttaa aggaagcata gatgaaaaaa attactattg
    11161 cacattctcc tgatgctgat gatattttta tgtatatggc tattaaattt gggtggatag
    11221 ggaatgattt tgcttatgaa aatacagctt tagatataca aactttaaat gaatttgctt
    11281 tgaaaaatga atttgatgct acggctattt cttttgggct ttatccttta atcgcttctg
    11341 agtatgcgct tttacgcaca gcagtgagtt ttggtgaagg ttatgggcca aaactcatca
    11401 agaaaaaaga cacgcattta aaaagaaatt ttaaagtcgc tttaagtgga gcaaatacca
    11461 ccaatgcttt gatttttcgt atgaaatacc ctgaagcaag aattatttat aagaattttt
    11521 tagacattga aaatgcggtt ttaagtggtg aagtagatgc aggagttttg atccatgaaa
    11581 gcattttaga atttgatcaa agtctttgcg tggaagcaga actttgggat atatggcttg
    11641 aatttgctaa agaaaattta cctttgcctt taggtggaat ggctttgcgt cgctctttgc
    11701 ctttaagcga tgcgattaag attgaaaggg atttaaccaa tgctgtaaaa attgccgatg
    11761 caaatcgtaa aattttagcc cctatgctta tggaaagaaa acttatccgt gttaatgaag
    11821 aaaaacttga tacttatctt aatttatatg ccaataaaaa ctctattagc atgaatcaaa
    11881 ctcaactttt agctgtagat acgcttttta aactaggata tgattataaa ttttatgata
    11941 aaatcataca tgtaaatgat tatcttatcc ctagcgaata cgaagaagct agaaattctt
    12001 aaaaaggata aaaatggacg aaagtacctt agttgctctt ggagtgcaaa cctttaaaat
    12061 cacactttta ctttccttgc ctatgctttt agcagggctt attgcagggc ttgtaatcag
    12121 tatttttcaa gcaactacac agattaacga aatgacactt tcttttgttc ctaaaatcat
    12181 cttggttgta gttattttaa tctttttaat gccttggatg actacaacta tgattgattt
    12241 tactgagaat atactaaatc aaattccaac ttttatcaaa tgatcattga ttttaaaaaa
    12301 tactcttctg tgcgtatagg aaatgaattt gaagttttag ttttggatca aatttgtgat
    12361 tttgatggtt ttttaatagg tggtgcaaac aaccttttag ttagtccaaa acctaaaaat
    12421 ataggaattt taggagatgg ttttaatttt atacaaattt tagatcggaa taaagatttt
    12481 atacatcttc gcataggctg caaaacaaaa tcaagtaaaa tatatcgctt tgctaaagaa
    12541 aataatctta agggttttga gtatttaagc aaaattcctg gcacacttgg tgggcttttg
    12601 aaaatgaatg cagggcttaa aggagagtgt atcagtcaaa atttaatcaa aattgctact
    12661 tctcaaggcg aaattctaag agaaaatata aattttgatt atcgtttttg tcctttaaat
    12721 atgccttttt tttgggctga atttaaacta aattttggct ttgataccct taaagatgaa
    12781 gctttaaaaa atgcaagaag caaccaacct agtggagcaa gctttggctc tatctttaaa
    12841 aatccaaaaa acgactttgc aggacgttta atcgaagctg tagggcttaa aggctttagt
    12901 aaaggagatg ctatgttaag cgataaacac gcaaattttt taatcaataa aaaaaatgca
    12961 agttttgaag atgcgttttt tcttatcgaa ttagctagaa aaaaagtctt tgaagaattt
    13021 ggcataaact tagaaaatga agtgattatt atctaaaaat ttttcaatat atctttaatt
    13081 tttttatttc attatctata acactagcta acatttttgg catttgattt acaatatctt
    13141 gataattttg ttttgtatct tgatctttta atatcaaatt taattttgca ttttttgctg
    13201 caagaatttt tccattgctt gtagaaataa ttttaaaatt aacactagcc acaccctctt
    13261 tactagttgt gataaaataa tttgtaatat ttacataaaa atcttgcaaa tttaccacca
    13321 caacataatc tgtaaatttg gcatacattt tagccttatc tttttcttgt gttaaaaaag
    13381 gactgacatt tataagtttt gcatccttag ggctaaaata tgacaaagtt ttaggacttt
    13441 gataaatacc atttgcagca gaattaaccc aatcaagcct taaactttga atcaaatttt
    13501 tagcaaataa tgtagaaaat tccttatcac tcaccctaaa accatctaaa aaataaccaa
    13561 aatttttcct agaagttaat acaatggcaa aatcaatatc tttatctttg gtgatttgcg
    13621 attttttttc aatcaaggta gaactatcaa acaatgcttt ttgttgattt agatttggat
    13681 ttgcaacatt ttgatttaga tctattactt caaaactatc tgcgcttttt tcaattttaa
    13741 taactttttt ctgagaaaaa ttattcgcta aaagattaga acttaaaact aaacttaaaa
    13801 acaaaatgaa acaatacctc atcttca
//
LOCUS       DAPIWV010000042        13646 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.043, whole genome shotgun sequence.
ACCESSION   DAPIWV010000042 DAPIWV010000000
VERSION     DAPIWV010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13646
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.043"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            47..1297
                     /locus_tag="RJ272_000886"
     CDS             47..1297
                     /locus_tag="RJ272_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HDV7381991.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWFVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1312..2676
                     /locus_tag="RJ272_000887"
     CDS             1312..2676
                     /locus_tag="RJ272_000887"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDV7381992.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2684..3205)
                     /locus_tag="RJ272_000888"
     CDS             complement(2684..3205)
                     /locus_tag="RJ272_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381993.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(3186..4196)
                     /gene="ribD"
                     /locus_tag="RJ272_000889"
     CDS             complement(3186..4196)
                     /gene="ribD"
                     /locus_tag="RJ272_000889"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDV7381994.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKNLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4402..4489)
                     /locus_tag="RJ272_000890"
     tRNA            complement(4402..4489)
                     /locus_tag="RJ272_000890"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4453..4455),aa:Ser,seq:tga)
     gene            complement(4511..4584)
                     /locus_tag="RJ272_000891"
     tRNA            complement(4511..4584)
                     /locus_tag="RJ272_000891"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4550..4552),aa:Cys,seq:gca)
     gene            complement(4603..4691)
                     /locus_tag="RJ272_000892"
     tRNA            complement(4603..4691)
                     /locus_tag="RJ272_000892"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4655..4657),aa:Leu,seq:taa)
     gene            complement(4701..4775)
                     /locus_tag="RJ272_000893"
     tRNA            complement(4701..4775)
                     /locus_tag="RJ272_000893"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4741..4743),aa:Gly,seq:gcc)
     gene            complement(4847..5599)
                     /locus_tag="RJ272_000894"
     CDS             complement(4847..5599)
                     /locus_tag="RJ272_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7381995.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNANIAPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            5672..6691
                     /gene="mutY"
                     /locus_tag="RJ272_000895"
     CDS             5672..6691
                     /gene="mutY"
                     /locus_tag="RJ272_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDV7381996.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYKFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6677..7936)
                     /locus_tag="RJ272_000896"
     CDS             complement(6677..7936)
                     /locus_tag="RJ272_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7381997.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFAIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            8102..8959
                     /locus_tag="RJ272_000897"
     CDS             8102..8959
                     /locus_tag="RJ272_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HDV7381998.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLGNYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDKPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLSD"
     gene            complement(8956..9762)
                     /locus_tag="RJ272_000898"
     CDS             complement(8956..9762)
                     /locus_tag="RJ272_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7381999.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFAQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9759..10535)
                     /locus_tag="RJ272_000899"
     CDS             complement(9759..10535)
                     /locus_tag="RJ272_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7382000.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKKFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10535..11521)
                     /locus_tag="RJ272_000900"
     CDS             complement(10535..11521)
                     /locus_tag="RJ272_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7382001.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNAFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHAIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(11496..13628)
                     /locus_tag="RJ272_000901"
     CDS             complement(11496..13628)
                     /locus_tag="RJ272_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7382002.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSTYNHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQKGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDEISMMGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFTNHDAKRKSLVYYSVPGVINYHRMTTLMDMTKQSHSIFAL
                     DSHNFNEFFTLSGGARYEFSTYNTNRSYRNEMSMNGRPPSSNPIITDSTTLFDTDKNT
                     NNFAFEITPNFKYSDTGNLYLKYERGFVSPTPAQFVNRNKTGNGIPPYYSSNLKAEIF
                     DTFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVE
                     LSLSQNFLDDDLIFRESLTYLDAKISKGVNDGVRIPYVSKIKATAGLEYAWNKNFSNF
                     IDLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKR
                     YYTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         4578 a         2045 c         2198 g         4825 t
ORIGIN      
        1 ttttgctaaa ataaaagaga tgtaatctta aatttaagga agaataatga atactcctaa
       61 atggactagt cacgatacaa ggtgggtttt atctcttttt ggaacagcta ttggagccgg
      121 cgtacttttg ttacctatta gtgctgggct tggtggattg atacctttgt tagttatact
      181 tgttttagct tttcctatga cttacttagc tcatagaaat ttatgtcgct ttgtgctttc
      241 aagttctaat ccaaaagatg atattacttt tgttgcagaa agttattttg gcaagggcgg
      301 tggattttta attacacttt tgtatttttt tgctattttg cctattttat tggtttatag
      361 tgctaatctt acaacaactt tgcttgagtt cttaatcaat cagtttaatt tcaatgcaga
      421 tcttactcat gctgctcgtt ggtgggtgag ttttttgatt gttggagttt tggttttgat
      481 ttctattctt ggtgaaaatg ttgtaacaaa agcaatgagt tttcttgttt ttccttttat
      541 tatattttta tttatttttt cattgctttt aattccacaa tggaatttat cgttatttgc
      601 aaatgttgat ttttccgtaa tttcaacaag taatttttgg gttactttat ggcttgttat
      661 tcctgtgatg gtatttagtt ttaatcactc tcctatcatt tcttcacttg cttgttattg
      721 taaaaaagaa tatggtggtt atgctgaacc tcgcgctaga aaaattattt ctttagcaat
      781 tattcttatg gtttttgttg taatgttttt tgttttttct tgtgctttaa cctttacacc
      841 agaagatttt gcatcagcaa aagatcaaaa tatcaatatt cttactttta tagcaaataa
      901 atttcctgaa gtttctttac tagcttatgt tggacctatt gttgcacttg tagctattag
      961 caaaagtttc ttagggcatt atcttggttc tcaagaaggc ttaaatggta ttttatataa
     1021 agcaagtaat ggtagaattc aaggtaaatt cgctcaaact ttaacagcga tcattacctt
     1081 tgctatcgcg tggtttgttg cgtataaaaa tccaagtgtt ataggaatta tcgaggctat
     1141 tggtggtcct gttttggcta ttttgctttt cttaatgccg ctttattgta tttatcgttt
     1201 tgatattttg gcaaggtttc gtaataaatt tttagatctt tttgttttgg taatggggat
     1261 agttgcaatt tctgctgcaa ttcatgatct tttataaatt aaggataaaa aatgagtaat
     1321 ttaagcattt ttaaaatagg tgttggccct tcttcttctc atactttagg gcctatgctt
     1381 gctggaaatt tattttgtaa aaaagttgct aaaaagcttg atgaaattga tagagttgag
     1441 gttactcttt atggttcttt gtcgttaaca ggcaaaggac acttgagtga taaggctgtg
     1501 atttgggggt taaatggctt agaagctaaa aatttaagtg cggcaataca agatgaagta
     1561 aataaaaatg ctattgaaaa tgctcaaatt gatttttgtg gtgagaaaaa actttgtttt
     1621 aattatgaaa aagatttgat attttccaaa gattttttac ctttacatga gaatggtatg
     1681 aagattaaag cttatgattg taaaggtggg ttagttgatg aggaaactta ttattctgta
     1741 ggtggaggct ttgttttaac agctgcggaa ttagaaaaaa aaggtaaaaa ttctaaccaa
     1801 aataaaaaga aaaaactaga tatagagctt aataacgcta aagaagcttt agagctttgc
     1861 gataaaagag attgggattt agcagagctt tcctatcgtt atgaattgca atttcacact
     1921 aaagaggaaa ttcgtgctta ttgtcttgaa atttgggaag tgatgcaaga agtgtattat
     1981 aatggtacgc atccaaatga agattattta cccggaaaac ttcatttaaa acgtagagct
     2041 aaagggctta aagaaagagt ggcgatgaca gctgatccta tgggcattat agattttatt
     2101 tctttatatg ctattgcgat tgctgaagaa aatgctagcg gagcaaaagt tgtaaccgcg
     2161 ccaacaaatg gagcatgtgc cgttatccct gctgttatgc tttatcttaa aaatcatact
     2221 ataggtttta gtgatgaaaa agctatagag tttttattaa cagcaatgct tataggttct
     2281 ttttataaga aaaatgcaag tattagcgga gcagaagcag gctgtcaagc agaaattggt
     2341 agtgctagtt ctatggcagc tgcggctatg gcaacagttt taggggttaa tgcttttaaa
     2401 gcatgcaacg ctgctgaaat ggcaatggaa catcatctag gtttaacttg cgatccagtt
     2461 gcaggacttg tgcaaattcc ttgcatagaa agaaatgcct ttggagctat taaggctata
     2521 agtgctgcta gaatggcaat gacacgtaaa tctactccta tggtaagcct tgatgaggtt
     2581 atagaaacca tgtatgaaac aggaaaagat atgaattata aatacaaaga aacttcttta
     2641 ggtggtcttg ctacaaattt aaaaacagta tgctaaagtg tttttacact ttggtgtatt
     2701 ttttcattct tagacttaaa aattctttca tttcttcttt ggaaaaactt ttaagaatac
     2761 gaatttgctt aaaaagcaag ccaagattga ttgctcccat cactaaaagc aataagcaaa
     2821 tcattaaaaa aacaagatct atggctccaa attcattaat catagccaaa cttgcaaaaa
     2881 atacgctcgc taataacaaa aaaaataaaa gcaatatttg ttttaatttt gcctcattaa
     2941 aattatcgca attttgagtg aaatttctaa aaagtatgat ctttttaccc aaatttgaaa
     3001 ctaaaatttc atcattttct ttaaataagc cttcttttaa actttgataa aaaaagattt
     3061 cattatttaa atttaaagca tctttgtagc ttgataaggt gtagtctttg taaaaaaagg
     3121 attttaattc atttttcttt tctattttaa ataatcttaa atcatttctc gcataaaaaa
     3181 atccactaaa gttcataaat gccataagta tcactcccta aaaaattcct ataaagtggc
     3241 ttgaaattta aaggtattgt aacatttttt tcatcattta aacttgaact ttggaaaatc
     3301 aaaaacatat ctatttcatc tttaaaggtt ttgagaaaat tttctccacc ctcatacatt
     3361 aaaaatttag cttcacttgg aatttgggta taaatttggc ggtttggaac tttaaataaa
     3421 gggatatttt tatcaaaatt atctatattt tgacggctta agatacaaag attaggcgct
     3481 tttgctttgc aaagcctagc atctagtata gggtgatctt ttcttatggt ttctccaccg
     3541 actacaagca aatcaatcac cgctctaatt ttatgtgcat aagtgcgact tagctcattg
     3601 cttacgattt tgccaaaagg tgagccgttc atagaaaggg ctaatttaaa aagtttaaat
     3661 tgcccttttt gccattttaa aaaaggtttt aaaagttttt ttccttcttc tttaagtatg
     3721 tcaaattcaa cctctatacc ttgttttttt aaaaattcag ccccaccact tgcgatttta
     3781 tttccatctt taacgctgat gaaaattttt ttaaaaccta gctcgctaaa gagttttgca
     3841 caaggaggcg tttttccttg atgagagcaa ggctcaagtg tgacaaaagc tatgctatct
     3901 ttaaatacac cttgatggtt tttgcaaata aactcatgca aggcgtttgc ttctttaggc
     3961 aatgaaattt caggtcttaa gtttttaaaa gcatgagcta tggcattaag ttccgcatga
     4021 gctaatccag ctttttcatg agcttttatg gctaaaattt tttcattttt atctaagatt
     4081 acacagccta cagccggatt tggataggtt aaaaactgat atttccaagc ctcatttaaa
     4141 gctaaattca tataaaattc tttcatttgc ctaccttgta ttttaaaatt tgacatattt
     4201 ttaaaatttt atatttttgt tttaagataa caaattctaa attttccatt tgtatttctt
     4261 atttttaatt atattagcca tagtttttct aagttttttt aggatataac aaaaatagta
     4321 agaccgaagt attatttttc atttgtaata tcctttataa tttcaggaat gatataagct
     4381 tgataaacta gaaagtcttg gtggccggga gaaagggatt cgaacccctg gaggtgtgac
     4441 cctcaacggt tttcaagacc gccgctttcg accactcagc catctcccga taaagtaaag
     4501 ttttgccttt tggaggcgac atccggattc gaaccggaga tcaaggcttt gcaggcccat
     4561 gccttaccgc ttggctatgt cgccctgata atgttgaaaa agtggtgccc gaggccggac
     4621 ttgaaccggc acggaagaaa aattccgagg gattttaagt cccttgtgtc taccaattcc
     4681 accacccggg cgggtgatta tggagcggga aacgagattc gaactcgcga ccccaacctt
     4741 ggcaaggttg tgctctaccc ctgagctatt cccgcataaa tttctgaaag aattgaagat
     4801 aaaagtatag caaaataaac ttaaaaggag tttattttgc cttaagttat ttgcaaataa
     4861 ataaagcttt cgcgcttaaa atttgttctt tttcgctgat aattggagat gaaagttcta
     4921 tattgtcaga ttttgcattt aacattctag gtgcgatatt ggcatttgta tttacttgta
     4981 aatttttcaa tacacaagtt ttattaagat ctaaagagta agttttttca tattcgtatg
     5041 atgtttttaa aagctctttg tagagatttt ctttgttgtt gtttagtgta tcttttgaaa
     5101 attttgtttg tatggctggt gttgaaacgc tgatgaaatt atttttagct atgatagaat
     5161 tgatgtcatt taaaagcttg ttaaaatctg caagttggtt ttctttaaat tcacattcta
     5221 aattcgcatc aaatctttga ccttttggag tttgtatacc atctttatag gaaaaattag
     5281 gttctaaaga aaaacttcct ccgctacaaa aattttcttt ttttgagcgt tctaaaattt
     5341 gattgaaagt atttgtgatt tcagcttttt cactattgtc taatgtaatt tttgaactta
     5401 aattttcatt tgcccaaaaa ttaatatttg catataaaat atcgggtttt agcgtattgc
     5461 ttacttctat atttcttgaa aaatataaat catgattaga gtcttttttg cctaaaaatt
     5521 ctacattaaa aaccacgcct gcaacaaaaa gtaataaaca taaaaaacct acacctaaac
     5581 ctttaaaaaa agctaacatg gatatcctta ataatttaat ttgagctaat tttagcaaaa
     5641 aattttaaaa ttttttgtta tactctcatt tatgcaaaaa aaagagcttg aaaaactaca
     5701 agaaaattta cttctttggt atgaaaaaaa tggacgcaaa actttgcctt ggcgtaattt
     5761 acaaagtcaa aattgtgatg aaagtttaaa gcatattgat agagcttatg gggtttatat
     5821 cagcgaaatt atgcttcaac aaactcaagt taaatcagtt ttagaaaggt tttatttccc
     5881 ctttttgcaa aaatttccta ctttagaaag tttggctaat gctaatgaag acgagctttt
     5941 aaaggcttgg caaggacttg gttattacac tcgtgctaga aatttaaaaa aggcagcttt
     6001 agaatgcgtg gataagtttg gggctaaatt acctaaagaa gttgaggatc taaaaaaatt
     6061 aagtggtata ggagcttata cagcaggcgc tatagcttgt tttggctacg atcaaaaggt
     6121 ttcttttgtt gatggcaata tacgccgtgt gctttctcgt ctttttgctt tggaaaatcc
     6181 tagcatgaaa gaacttgaaa aaagagctaa agagctttta aatttaaatc atgcctttga
     6241 tcacaaccaa gctttgcttg atataggggc tttggtttgt gtgggtaaaa atgcaaagtg
     6301 tgggatttgt cctttgtatg atttttgtca aggcaaattt catacagagc tttatccaag
     6361 agctaaaaaa atactttatg agagtttaaa tttaaatctt tttttgtttg aatttaataa
     6421 aaaatttgcg atacagaaaa gccaagataa gctttataag ggtatgtata attttccttt
     6481 ttttaaagaa ggagagtata aactttctaa agatatgggt tttgtagggg agtttaagca
     6541 cagctatact aagtataaac ttaatatcaa ggtttatcat caaattttaa acaatgaaaa
     6601 taaaaattat aaatttaaaa ccttaaaaga gttagaaagt accgcacttt cggcactttc
     6661 tttaaaagcg ttaaaattaa ttaagctctg attttttagg caaacataaa gtagctataa
     6721 gcatgatgat tgtaaaaata gctatatata taaaaaagcc attttctata cctgcatttt
     6781 taaattgtaa agcaacccaa ggagcagatc ctccaaaaac agcatttgaa atagcataac
     6841 ccaaacctgt ccctaaagct cttacatgtt caggaaaaag ttttgcttta aaaatcccag
     6901 caactgaagt ataaaaactt aaaataacaa acaataatac caccaacata aatgtcaaag
     6961 aaggattatt ttgtgcgtta ttggctataa gtgaaaaaat aggataaatt cctaccaatg
     7021 ccaaaataca aaatacaatt aaagatcgtt tgtgacctat tttatctcct atatatccaa
     7081 aaagaggttg aatgatcatt agtataaata aagcacctaa gaaaagatta ttaacaagca
     7141 ttttatccat acccgtattt tccataaaag ttttagtata agttgtaata gtataaaaag
     7201 ctaaagaacc tccagaggta accccaagta ccattaaaaa aggtttccaa gatttgcata
     7261 atgcctttaa agtaccacga tcttcatgct ggtgaagttt tgtagcactt tcattcatca
     7321 tttttcttac aaaaagcgag cctagtgcta aaattccgcc tattgcaaaa agtattctcc
     7381 aagcataatc tttcatatca tcaatgctaa aaaataaaaa cattatacta atgcttgcaa
     7441 cggccaaaag ttgaccacct attagggtta catactgaaa agatgagtaa aaaccgcgtt
     7501 ttccttccgt agcaagttct gaaagataag tagctgctat gccatactcc ccgcctacac
     7561 taagaccttg aataagtctt gctattaaaa gcaagataat agcaagatcg cccactgtat
     7621 ctttgcttgg taaggctgct atcataaaag agcccaaagc cattaaaacc actgatataa
     7681 ccatagattt cttacgacct actttatcag ccaaagaacc aaaaagccaa gaacctatag
     7741 gacgcataaa aaatcctgct gcaaaaactc caaaggcatt gatttgctgg ataacaggat
     7801 tatctgaagt tgaaaaagta tgagcaaaat aagttgctgt aaaagcatag atataaaagt
     7861 caaaccactc tactaaattt ccgctacttg cagcaataat agagcgaatt tttttcgtgc
     7921 gagtaagctc ttgcataaac ccttccttaa ttttagattt ttatttaagt atagtgtgat
     7981 ttttgtttaa tatatttaaa aataaagaag agaaataaaa aagataaaaa tatcgataaa
     8041 aatgttacat attttaataa atttcataaa ttttggtaaa atgtttactc taggaaatat
     8101 aatgaaattt aaaaaaatat atatagaatt aagtgatatt tgtggtttaa aatgcgattt
     8161 ttgtccttct cgaaaaggaa ttcgcggggt aatgagtgaa gaaaaatttc aaaacttagc
     8221 ttatgaaatt tctaataaag ctgagctttt tacctttcat cttttgggcg atcctttgct
     8281 tttacctaat ttgggaaatt atctaaaaat cgcaaaagat gaagctatga aacttgaaat
     8341 cactacaagt ggcttttatc taaattctaa aaatcaagct ttattgttag ggtatgagaa
     8401 tatccatcaa atcaatattt ctttaatgtc ttttttaagt caaagcaaaa tttctttaga
     8461 acagtatttt aagcctattt tagaactttg caaaaagcat ttagagcaaa aaagcctttc
     8521 ttttatcaat ctaagacttt ggaatttaga tgctaatttt aaagcaccta agtcaaattt
     8581 aaaaatttat gagtttttag ccaaagaatt tgaagctaag atcgatgcaa acttaagtaa
     8641 aaatcgctta caaagacata ttttgcttca tcaaaataaa ctttttaaat ggccaaattt
     8701 aaaagataaa cccctttata aaaaaggaaa atgccatgct ttaaaagagc aaattgggat
     8761 tttaagtgat ggaagtttag tgccttgctg tttggatact aaagcagata ttaacttggg
     8821 aaatgttttt gaaaataact ttgataagct ttttaaatca ccgcgtataa agatgatgaa
     8881 aaaagctttt gaagaagata aacgcataga aaaactttgt caaacttgcg aattttttaa
     8941 agcaagattg agtgattaaa aattgttatt ttctagcttt gttttaaatt cttgaattct
     9001 atctattatc ttaggactaa gacgtaataa tataggtgta tctttgttaa aataaatact
     9061 tcctgtttta actgctttgg tatttttcaa taaagcattt gtatctaaaa gattgttttt
     9121 agcattaatt ccaagaatga gtatatctgg attttgtttc agtatatatt ctgctgatat
     9181 aacaggtctt gaaatttgac tttgcggact taaattttta atccctataa gtcttaaaat
     9241 atcagctatt aaagaattat cattaaaggc cattaaaggg ttgctagaat aaagataaat
     9301 cgcactttta tttaggggtt tatcgcttaa tttttttaaa ttttgagcaa attcttgttt
     9361 taaaagctct gcttcttttt cttttttggt gatttggcct aaggttgtga tattttttgt
     9421 tatatcttct aaacgctcgg cttttaaatt gatacttttg ataccaaaat ttttaagtcc
     9481 ttcttctaaa tttaaagaat aagagcttaa aatcaccaaa cttggtttta gtgctactat
     9541 tttttcaagt gaaggatttg aaaaagtgcc tacgcttgta agttttgagg tttgatcttt
     9601 aggatagata tttgagtgtt gtaaagtggc aatgcctacg atttgatctt cagccttaag
     9661 cataaaaagg gtttctatgc ttgcaggatc aagcactaca aggcgttctt ttgcatttag
     9721 tgtgattaaa aacaaactca taataattaa aatttttttc attttttctc ctttaaagct
     9781 aaaatataag gtttagaatt tttataaata atctcgcagt ttaaatcata aatttctttt
     9841 aaaatttctt gagtaaaaag ctctttactc gttccaaaat actttatctc cccttctttt
     9901 aaaaaaagga ttttatcgca gaacatagaa gctaaattta aatcatgtaa gatagcaaca
     9961 acggctatat ttttttcttt aactagtttt tcgcaaaggc ttaaaagctc tatagcatag
    10021 tttaaatcaa gggctgaagt gggttcatct aaaaaaagaa tttttggctt tttaagtaaa
    10081 gctcttgcta aaagcattct ttgaaattca cctccgctta aagaaagtat gcttctttct
    10141 agaaaatttt caagtcttaa atctttagca aattttttaa tttctaaaat atcttcttta
    10201 gaataagaac taaaagcgtg ttttaaattc gcatatttgc tcattaaaag cacatcgatg
    10261 acttttaaag gggtgtttaa ttctgatttt tgaggcacaa atccgcaaat tttggcaaat
    10321 tctttaagag aaaaatcctt gatatttgtg ttaaaaagac ttatcactcc tttatttgga
    10381 cttaaatttt taagtataag ttttaaaaga gtgcttttgc ctgagccatt tggccctaaa
    10441 attcctataa aagcttggtt tttaagttct aaatgaatat tttttagtaa atctttttgg
    10501 tgataagcaa agcttaaatc atgtattttt agcattataa aaatctccta gcgcttaaag
    10561 ccaagtataa aaaaatagga gctccaaaaa atgcagttag aattccaatc ggaatttgca
    10621 caggagctaa aagagttctt gctaaagtat cacaaataag taaaaataat cctccaaatg
    10681 ctgtacataa agggataact aaggcattat tataattttt aagcaaaagt cttatagcat
    10741 gaggaatgat gagtccaaca aagcctataa gtccgctaaa agcaaccgca aaagatacag
    10801 ccaaggatga gacaatgagt aaatttatct ttaatttttg agcatttacc cctagatttc
    10861 tagcttcatc atctccgctt aaaagtatgt ttaattcgtt tttatgagcg taaaaataaa
    10921 acaaacaaaa aattaaaggc aagattaaaa ttcccacacg aaaccaagaa gcattgccta
    10981 tatttcccat aagccaagcg actattttaa aagaatcctc gcctataaga taagtgaaaa
    11041 aagaagtgaa agcccctaaa aaagatgaag ctgctatgcc gataatgagt aaagttgcta
    11101 tagaagcttt agaagaaatt ttaaaaactc ctagggcaaa aaaggcagag caaacaaaac
    11161 ctaaaattcc ataataataa tcattcaatt ttaacaaata cgccaaaacc gctccaaagg
    11221 ttgccgcaga agctatacct atgatataag gatcagctat aggatttgaa aatgcatttt
    11281 gagtgatagc cccactacta gctaaaagca taccgattaa aatcgccatt ataatccgtg
    11341 gtaagcgtcc atctatgatt atttgtctta aaatttcatc ttggctaaag atatatgaaa
    11401 aaagctcttt tgggtttaaa ttctcatctc ctaagcaaag tgctgtaaaa gaagcgatta
    11461 tataagctac caaaagccct ataatcacta aaattttaga atgcgtattt aaattcaaca
    11521 tagtagtttc tgccatttcc aactaggtat tgatcattta tactgtcttg ataggtgtag
    11581 tatcttttat cgaaaagatt gcgaattcct gctaaaattt gtaatttttt ataattatat
    11641 ttcatgccaa tatctgttaa aaaataatcc cttatccaag aatttttaga catttttcct
    11701 gtattttcat ctatagtgcc accatctttt gctctagaaa aataggttaa atcaataaaa
    11761 tttgagaaat ttttattcca agcgtattca agcccagctg tggctttgat ttttgaaaca
    11821 taaggaattc tcacgccgtc attaacacct ttagaaattt tagcatcaag ataagttaga
    11881 ctttctctaa agattaaatc atcatctaaa aaattttgac tcaggcttaa ttctactcct
    11941 aaacggcgag tttgatctat attataatat ttccaccaag atccactagt agaatgaggg
    12001 tttccaagat aagaaatttc atctttgctt agggtgtaaa ataaagttag attaaagccg
    12061 taaaaatccc accaaaaatc atcaatacct agttcaaagg tatcaaagat ctcagctttt
    12121 aggttcgacg aataataggg tggtattcca ttaccagttt tgttgcgatt gacaaattga
    12181 gcaggtgtag gagaaacaaa acctctttcg tatttaagat aaagattgcc tgtgtcagag
    12241 tatttaaagt taggggtgat ttcaaaagca aaattattgg tgtttttatc ggtatcaaaa
    12301 agggttgttg agtctgtgat tataggattt gatgatggcg gtcttccgtt catactcatt
    12361 tcatttctat aagatctatt ggtattataa gtgctaaatt catatctagc tccaccggat
    12421 aaagtgaaaa attcattaaa attatgagaa tcaagagcga aaatagaatg gctttgttta
    12481 gtcatatcca ttaaagttgt catcctgtga taatttatga cacctggaac gctataatac
    12541 accaaactct ttctttttgc atcatggttt gtaaattcat aaccaaaaat aaaataagaa
    12601 ttatttgcat aatttagctt gttttttaaa cttatccctg taagtgtgtc ttcaaaacca
    12661 cttccatttt gataagctgt agttcccatc atagaaattt catcttttag ataattgatc
    12721 ttttgatttt gccaaaaagc ttctaggtta aattcccata tatcatcaaa atagtaatga
    12781 taatccaaag aaatttcagg gcgattgatt tgtgtgatat tgtcactatt gcctttttgg
    12841 gttggatcgc tttgagcttg tgcttttgtt agatagccac tgctggtatt tttgctttta
    12901 aaataattat aacccaaagt taagtcgcta ttatcattga tatcaatata ggtttttgtg
    12961 ttgataaaat agcctttttc attataacct ttttgatatc catcaaggtt aaaactttgt
    13021 atatcaaagc taaaagctaa attttcattt atttgtttgg cgccattgat acctaaattt
    13081 ccacctagtc caccatgatt ataggtactg ctttttaaat ttatagcaaa agcatctgat
    13141 ttttgttttt ttgtaatgat attaatcacg ccacctctag taccacttcc ataaagcaca
    13201 gatccacccc caggtatgat ttctatgcgt tctacattat ctaaattgat actatctagt
    13261 ggggttacac catgggaatt atcaagaaca ttaatagcat gcccatcaat cataactttt
    13321 acagctatat tggatttatt tccttgtcca cgcatatcta tattgcgtcc aagtccaaaa
    13381 tttacaaaac taatgcccga aattctttct aaggcttgtt ctaaagaaac ataaccttta
    13441 ttttgtagat ctttgccttc tatgctgatt acattgcgta aatttgaatc cgcatcttgt
    13501 tcaaaacctg ttgtactaac aacaactttt tgtagattga tagctttatt tgattcttgt
    13561 gcatttaaat tagttattag caataatgca aataaagata atttaaaagc ttttttattt
    13621 gggtgcaaat tttactcctt aaataa
//
LOCUS       DAPIWV010000043        13622 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.044, whole genome shotgun sequence.
ACCESSION   DAPIWV010000043 DAPIWV010000000
VERSION     DAPIWV010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13622
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.044"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            68..1189
                     /locus_tag="RJ272_000902"
     CDS             68..1189
                     /locus_tag="RJ272_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HDV7382003.1"
                     /translation="MLYCDHCVMPNTRPGIKFFKDEKGKNICSACINHKNKEKIDYKA
                     RFKELENLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHVMKEKLGMNPILFSVEDNFT
                     MTQAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGGDDKETPSAKAIFENGVASDLDINEFIDDEIKEENL
                     QLFFNPSADDLNKLDPIYLSYFIKWNSYSNYIFAKSRGFSDLQNEWDRSHCAENFDQI
                     DTIGYILHAWMKYPKFGHAMASDYASRFVRYGMMSREEAVKIVKEKDHKLDNKCIEDF
                     CNFTGISKTTFWKIVEKHYNLELFYKNEFNEFKLKNPLK"
     gene            1200..1881
                     /locus_tag="RJ272_000903"
                     /pseudo
     CDS             1200..1881
                     /locus_tag="RJ272_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            1923..2927
                     /gene="legI"
                     /locus_tag="RJ272_000904"
     CDS             1923..2927
                     /gene="legI"
                     /locus_tag="RJ272_000904"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HDV7382004.1"
                     /translation="MKKALIIAEAGVNHNGDLNLAKKLIEVAAKSGADFVKFQSFKAE
                     LCVSKNAKKAAYQLKTTAKDESQLEMIKKLELDFNAHQLLISHAKQCGIAFLSTAFDL
                     ESIELLDDLGLEVFKIPSGEITNLPYLKKIAKLNKKIILSTGMSNLGEIEAALEVLCK
                     EGTQRANITLLHCTTEYPAPFNEVNLKAMQTLKNAFNLDVGYSDHTKGIHISLAAIAL
                     GASVIEKHFTLDKNMSGPDHKASLEPDELQELCTKIREIESALGDGIKQASKSERKNI
                     EIARKSLVAKKKIKKGEIFSEENLTTKRPASGISAMRYDEYLGKKASKDYEEDELIHE
                     "
     gene            2920..4095
                     /gene="legG"
                     /locus_tag="RJ272_000905"
     CDS             2920..4095
                     /gene="legG"
                     /locus_tag="RJ272_000905"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDV7382005.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCLEIQNDKDLELQIIATGAHLS
                     PEFGLTYKEIEKEFKIAKKIPILLASDDKISLCKAMALANIGFSEAFESLKPDIVVIL
                     GDRYEMLSVASVCLMMNLPIAHLCGGELTLGAIDDSIRHSISKMAHLHFVSTQTYKNR
                     LLQLGEEKNRVFNVGSLASTIMKNINFLDKNELAKVLEFDLGQNIYLITYHPVTLNLK
                     NSKKEIDILLKTLDELNNASLIFTKANADENGLLINEILKDYCEKNPKKAKLFDNLGS
                     QKYLSIMKIAKAMIGNSSSGISESPFFKTPCINIGSRQKGRLRTQNIIDCEFENLDQA
                     FEKLESKDFKQALHHFKNPYENDKNPNIIIKTCLKNANLDTILQKNFIDLRQNLGYK"
     gene            4082..5113
                     /locus_tag="RJ272_000906"
     CDS             4082..5113
                     /locus_tag="RJ272_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDV7382006.1"
                     /translation="MDINKLKLTPDSSIEEALKVVGKERVRLGIIVDKKDKFLGVISD
                     SNIRKALIKGKNLQSKIKDIYTKNPITIKENTSKNELLKLSAKTDIYDFPVLNDKKEI
                     ISIKSISSLLNRQVNSNFVIIMAGGLGTRLKELTKDTPKPMLKVGKKPILESIVQKLK
                     EQNFENFIFCVNYKKQIIEDYFKKGKNFGVKISYIKERKKLGTAGALSLIKQDFKESF
                     IVMNADILTELNFNELLKAHKDSKALMSVCVREFEQQIPFGVIEQNKGFITNITEKPV
                     QKFLVSAGIYVCEPEMLELLNKNEYLDMPELIKLAMQKGRVNTYLIHDYWIDIGRLDE
                     FVKANEDFK"
     gene            5110..6015
                     /locus_tag="RJ272_000907"
     CDS             5110..6015
                     /locus_tag="RJ272_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDV7382007.1"
                     /translation="MKVLIIGFGSIGKKHFLALNELRFLVDVLSKSYEFSHFEGKNFR
                     LFKDLEELNLQDYDLFIIANITTSHFKTLEFLDQNVKEKIILVEKPLFQKDMEFIPSN
                     NNQIYIAYLLRFHPMIQDLKQLIDEKEVYFAKFICNSYLPNWRKLDYRQNYSAKKELG
                     GGVMLDLSHEIDLAFYFFKELSLKFSQNLKISELEITSDDFTFLALSAKNTSIHIELD
                     YFSKLTQRKILFHTKENSFEADLVHNKLNIYDKTNNFKSKTYENDTFKTLQNMYKAIL
                     EKDQNLCTLGEARRVLRLCDKARNE"
     gene            6008..6715
                     /gene="legF"
                     /locus_tag="RJ272_000908"
                     /gene_synonym="ptmB"
     CDS             6008..6715
                     /gene="legF"
                     /locus_tag="RJ272_000908"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HDV7382008.1"
                     /translation="MSEILCTICARGGSKGVKNKNIRKINDLEMIAYSIIQAKNSKLF
                     KHIVISTDSEEIAKIALKYGGEVFFKREAHLASDTAAKIPVMRDALLRSEEYFKCQFD
                     TLIDLDASAPLRSSADIIKAFETFCQNQNDNLITAVPARRNPYFNLIEVQDGKVVKSK
                     SGNFTTRQSVPKCYDMNASIYIFKRDFLLQNDSVFGKNTGLFIMDESTAFDVDSELDF
                     KIVEFLIKEKNLQAKDF"
     gene            6715..7485
                     /locus_tag="RJ272_000909"
     CDS             6715..7485
                     /locus_tag="RJ272_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDV7382009.1"
                     /translation="MLENKIIFVAGACGRIGKALCKKILQNKGIAILADINENHLSIL
                     KTELENEFKKELLSLRLDITSKESLNCAIDQAFEKYSKIDSFVNSSYPVGKDWGKIAY
                     YEASYEQICESLNLHLGGFILASQEFVKFFKKQSYGNIINLSSIMGVFAPKFENYENT
                     TMQSSLEYSVIKAGINHLGAWLAKELFNTNIRVNTLASGGILDNQANIFLEKYRKCCA
                     SKGMLDAEDICGTLVFLLSDESKFVTGQTLVVDDGWGL"
     gene            7485..9344
                     /locus_tag="RJ272_000910"
     CDS             7485..9344
                     /locus_tag="RJ272_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7382010.1"
                     /translation="MNNELFLKNTQALFEVDQPLAYALRILKNIENYNIDKNSDGLNI
                     INKQMQKIYENPNQELLDQLVYFQTHYKKYPVLFFYGFGNGMLYKTLCENKNHKHIIV
                     FENTLELIALAFSLFDFSQEIKSEKLILFYTPNITTAQLTTLFTHPNIYNCLKIYKLH
                     IHSNFYQQLYNQEIKNLNTKLSETIKFIALNYGNDPKDSLIGIKHTLENLPKVLNHGI
                     FQDFLKERRGKVKNAIIVSTGPSLTKQLPLLKKYGHKMTIFCADSSYAILAKAGIKPD
                     YVLSLERVHYTSELFNNDFKDFDKDILFIISSLTHKNTLHYLEKNNRTYMLVHRPLES
                     AGILKLDNFGYIGVGYSVANMAYELASALRHENIILIGQDLAYAEDGSSHPKDYLYLE
                     QADNTDNTTTLAYGKNGLVKTTLTWNLFRQTFEKDIFWTKEKLNINTYNCTEGGAYIE
                     GSIEKPFLWACENLLDESLNKPFSFPKSLSKKEANDKIDKIKKILQSAILQANKLIKS
                     TQKELNKLKFELNRDEINLQTLEKIRKKLLISFKEYKKLKLFNELSRALYFHNECEIV
                     KYEAMDDENQKKYLSHFLKLQYNWFAQGLGYLDTQNKIIQEALQNWHFDDIKE"
     gene            9365..11305
                     /locus_tag="RJ272_000911"
     CDS             9365..11305
                     /locus_tag="RJ272_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7382011.1"
                     /translation="MNFTSNQQEIFKQNINALVNEILRKKLQKIKNTKFELLLGNDNL
                     DINLRNTKDNTLLYINTIDELNSMLEIYNDKYLLYPVLYFYGFGNGILFKALLQNKHR
                     QHIVIFENDIEILWIMFHLLDFSCEIKKNKIIIFDTNEINIKDYEMLTLTKPFISFLR
                     IYFLELSSSYYEKMNKDIQKVNKNLMEYFKKAMIGYGNDPLDALQGIEQFVHNLPKML
                     THSSYKELINKRKNLSKTAIIVSTGPSLIKQLPLLEKYQNKATIFCADSSYPILAKHN
                     IKPDYVCMLERTSLTAEFFNHDFKDFDKDIVFICASLIHPNAIAYLEKNNREYILISR
                     FLSFALFIACHDYGYFDQSPSVAHMSYIIAAKLCHKNIIFIGQDLAYAENGDSHPQEY
                     QNSSTFESNIYQKIECLGYGGKNSVKTHSIWLLFKQIIEQLILDYPYINTYNCTEGGA
                     WIEGTIEQSFKTTCDKLLLDDLNKPFIKLKKPNIQKQNELMLKSYAKIYKSIKHCIEF
                     KKQTLATIEDIESSYTTLNYLSLEESKEILDILIQIIDNFKTKLENVNMVDFYEILGP
                     LLMQFELNLARIYVLNPKTLEDSFNKSVLWIKEHLEFIHMVYGHIEAQENALFKNIIP
                     LEEELKKRGFKKYLQRIKNANK"
     gene            11292..13190
                     /locus_tag="RJ272_000912"
     CDS             11292..13190
                     /locus_tag="RJ272_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7382012.1"
                     /translation="MQTSDIFKKNLDSMKGNVYKKLKEELKNFQELRDFSFTIGKDSL
                     NINLICKKNLKKIYQDPVQELNENLVFYQQNYYNHPFLFFYGLGNGILYKALLKNLNH
                     KRIVIIEKELEIIFIVLNFIDFSEYLFNGRIAIIYSSDYNNNTAELIFSLTNINLFFK
                     TYQINIHSAFYETYQEDIKKINNINLQTIKYLTLKKGTDPSDAMLGIEQAIWNLPEMF
                     KHYSYKELLQKRKGLNKNAIIVSTGPSLTKQLLLLKQYANKAIIFCVDSSYSILAKHN
                     IKPDYVLSLERIPLTSEFFNNDFGEFDKDVLFILPSLTHPNSIKYLNKFKKDYMLIAR
                     YLPFMISLNLKDNGYIGGGMSVAHVAYELAISLECKNIILIGQDLAYNKEGKSHTDDY
                     INLTLHEKDFERDKGRFTTTAYGGKGTVESSEIWTLFRKIFENYAINNKKCIKIYNCT
                     EGGARIEGTIEKPFEEICEEILESEIKKPLIKLKKKTKKEQFEHMLKSYQKIKKNIQL
                     ALSFQKECKKTLRKIQKITLKNEYINMDDIVKDIDNIRNKLSNKRYFFLHEILGPSLY
                     HEESLIAPIYIQSVNNESQRQNKILSWIYANESLIETIIDLIESQNIRIKKAIIPLQD
                     ELEKRNLI"
     gene            complement(13218..>13622)
                     /locus_tag="RJ272_000913"
     CDS             complement(13218..>13622)
                     /locus_tag="RJ272_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7382013.1"
                     /translation="SSTYVVSAGSGFSAGSGNSQFAALRISTVSAHDETAGVTTLKGA
                     MAVMDIAETAITNLDQIRADIGAVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAES
                     ANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT         5335 a         1896 c         2128 g         4263 t
ORIGIN      
        1 aattaatgtt cgatatactc taaacatttt ttaaaaaaaa taataaataa ttaaggggga
       61 aaccaaattg ctttactgtg atcattgtgt catgccaaat acaaggcctg gtataaaatt
      121 tttcaaagat gaaaaaggta aaaacatctg ttctgcttgt atcaatcata aaaacaaaga
      181 aaaaattgac tataaagcaa gatttaaaga gcttgaaaat ctatgtgata aataccgcag
      241 aatgaatggt aaattcgaat acgattgtgc tatagctgta agcggaggca aggattcaca
      301 ttttcaagtg catgtcatga aagaaaaact tggaatgaat cctattcttt ttagcgttga
      361 agataatttt accatgacac aagcaggcaa gaaaaatctt aaaaatttaa gcgaaacttt
      421 tggttgtcat atcattagct taaaacctga tatcaaaact caaaaaaaag ttatgctaaa
      481 aacctttgaa aaatatggaa aacctacttg gtttattgat agactgattt acagctatcc
      541 ttttgctatg gctttaaaat ttaatacacc tttattggtt tatggggaaa atgtaagtta
      601 tgagtatggg gggggggacg acaaagaaac gcctagtgca aaagcgatct ttgaaaatgg
      661 ggttgcaagc gatttagata taaatgaatt tattgatgat gaaataaaag aggaaaatct
      721 tcaacttttc tttaatccaa gcgctgatga tcttaataaa cttgatccga tttatcttag
      781 ttattttata aaatggaatt cttactcaaa ttatatcttt gctaaaagtc gtggatttag
      841 tgatttgcaa aatgagtggg atagaagtca ttgtgctgaa aattttgacc aaattgatac
      901 cataggatac atactgcacg cttggatgaa atatccaaaa tttggtcatg caatggcaag
      961 tgattacgca tctcgttttg tgcgttatgg aatgatgagt agagaagaag ctgtaaaaat
     1021 cgtgaaagaa aaagatcata aactagacaa taaatgtatt gaagattttt gtaattttac
     1081 aggcattagc aagactactt tttggaaaat tgttgaaaag cattacaatc ttgaactttt
     1141 ttacaaaaat gaattcaatg aatttaaact taaaaatcca ttaaaataaa ggaaataaaa
     1201 tgcaaaattc acttcaaacc tatactcaaa aatatgatga aaacaattat ggacttttat
     1261 atcctgattc tcatgtaata cgattttatg aaagaatttt aaaatacaaa cttggcatta
     1321 caagcggaaa tttacttgat tttggttgtg gcaatggggt tcattctaag tattttttag
     1381 ataagggctt taaacctttt ggcatagata ttgtgccaag tttgcaaaaa aattgggatg
     1441 caaaaatcaa aatttcaggg ggggggggat tgtaaaatca tagagccaaa ttctagtatc
     1501 aaagggcttt ttgatgaaaa aatggatatt gtctttgcaa atcaaagcct ttattatatc
     1561 cctaaaacag aacttaaaca aaatatctta gaattttatg aatgcttaaa tcaaggtgga
     1621 atactttttg ctacaatgat gagtgagaaa aattactatt tctctcatag cgaaaaagaa
     1681 aatgaaaatg gattgcgtaa ggttagtata cagggtcgct taaacgaaac aacctacatt
     1741 cattttgcta aaagtattga tgagttgcaa gaacttttta agccttttga agccttattt
     1801 ttgggtgatt atgatcctat taatttttat aattttgaag gctcggctca tcattttatt
     1861 tacattggta taaaaagata aaaatttttt gcctttattg aaggcaaaat aaaggtaaaa
     1921 aaatgaaaaa agctttaatc atagcagaag caggggttaa tcacaatggt gatttaaatt
     1981 tggccaaaaa gctgatcgaa gttgctgcca aaagtggagc tgattttgtt aaatttcaaa
     2041 gtttcaaagc cgaactttgc gtgagtaaaa atgctaaaaa agcagcttat cagctaaaaa
     2101 ccacagctaa agatgaaagt caattagaaa tgattaaaaa actagagctt gactttaatg
     2161 cacaccagct tttaatctct catgctaaac aatgtggtat cgcttttctt tcaacggctt
     2221 ttgatttaga aagtattgaa cttttagatg atttaggact tgaagttttt aaaattccaa
     2281 gcggagaaat cacaaatttg ccctatctaa aaaaaattgc aaaattaaat aaaaaaatca
     2341 tactctccac aggaatgtca aatttgggcg agatagaagc ggctttagaa gtactttgca
     2401 aagaaggcac ccaaagagca aatatcaccc tacttcactg cactaccgaa taccccgcac
     2461 cctttaatga ggttaattta aaagctatgc aaaccttaaa aaatgctttt aatcttgatg
     2521 taggctattc agatcacacc aaaggtatac atatttcttt ggccgctatc gccttagggg
     2581 caagcgtgat agaaaagcat tttaccttag ataaaaatat gtcaggacct gatcataaag
     2641 cctctttaga acctgatgag cttcaagaac tttgcacaaa aattagagaa atcgaaagtg
     2701 ctttaggtga tggcataaaa caagcaagca aaagcgaaag aaaaaatatc gaaattgcaa
     2761 gaaaaagcct agtagctaaa aagaaaatca aaaaaggaga aatttttagc gaagaaaacc
     2821 ttaccacaaa acgccctgct agtggtataa gtgcgatgcg ttatgatgag tatttgggca
     2881 aaaaagccag taaagattat gaagaagatg agctaatcca tgagtaaaag aaaaatttgc
     2941 atagtcagcg caacaagggc tgagtggtat cttttaagaa atttatgcct tgaaatacaa
     3001 aatgataagg acttagagct ccaaattatc gctacaggag cgcacttaag ccccgaattt
     3061 ggactaactt ataaagaaat agaaaaagaa tttaaaatcg ctaaaaaaat tcctatttta
     3121 ctcgcaagcg atgataaaat aagcctttgc aaagctatgg ctttagcaaa tattggcttt
     3181 agcgaagcat ttgaaagctt aaaacctgat atcgtagtaa ttttaggcga tcgttatgaa
     3241 atgttaagcg tggctagtgt atgcttgatg atgaatcttc ccatagccca tctttgcggc
     3301 ggagagctta ccttaggagc cattgatgat agcataagac atagcatttc taaaatggca
     3361 catttgcatt ttgtaagcac tcaaacttat aaaaatcgtc ttttgcaact tggagaagaa
     3421 aaaaatcgtg tatttaatgt cggatctttg gcaagtacta ttatgaaaaa tatcaatttt
     3481 ttggataaaa atgagcttgc aaaagtctta gaatttgact taggacaaaa tatttattta
     3541 attacctatc atcctgtaac tttaaattta aaaaattcta aaaaggaaat cgatatttta
     3601 ttaaaaactt tagacgagct taataatgca agtttgattt ttaccaaagc aaatgcagat
     3661 gaaaatgggc ttttgatcaa tgaaatttta aaagactact gcgaaaaaaa tcctaaaaaa
     3721 gctaaacttt ttgacaatct tggctcacaa aaatatctta gcattatgaa aatagctaaa
     3781 gccatgatag gaaatagctc aagcggtata agcgaaagtc ctttctttaa aaccccttgt
     3841 atcaatatag gatcaagaca aaaagggcgt ttaagaactc aaaatatcat tgattgtgaa
     3901 tttgaaaatt tagatcaagc ttttgaaaag ctagaaagca aagattttaa acaagcttta
     3961 catcatttta aaaaccctta cgaaaatgac aaaaatccaa atataatcat aaaaacttgc
     4021 ctaaaaaacg cgaatttgga tacaatttta caaaaaaatt tcattgattt aaggcaaaac
     4081 cttggatata aataaactca aactcacacc tgattctagc attgaagaag ccttaaaagt
     4141 agtaggaaaa gaacgcgttc gccttggaat cattgtcgat aaaaaggata aattcttagg
     4201 tgtcatcagt gattcaaata tcagaaaagc tttgataaag ggtaaaaatt tacaaagcaa
     4261 aatcaaagat atctatacta aaaatcctat taccatcaaa gaaaatacaa gcaagaatga
     4321 acttttaaaa ctaagtgcaa agactgatat ttatgatttt cctgtgctaa atgacaaaaa
     4381 agaaatcatt tctataaaat ccatttcttc cttgttaaac cgccaagtaa attcaaattt
     4441 tgtcatcata atggcaggtg gacttggaac ccgtttaaaa gaattgacca aagatactcc
     4501 aaaacctatg ctaaaggttg gaaaaaagcc tattttagaa agtatagtgc aaaaattaaa
     4561 agagcaaaat tttgaaaatt ttatcttttg tgtaaattat aaaaaacaaa ttatcgagga
     4621 ttattttaaa aaaggtaaaa attttggtgt aaaaatttct tatatcaaag agcgcaaaaa
     4681 actaggtaca gcaggggctt taagtcttat caagcaagat tttaaagaaa gctttatcgt
     4741 aatgaatgca gatattttaa ccgagctcaa ttttaacgag cttttaaaag cacataaaga
     4801 ttctaaagct ttaatgagtg tgtgtgtaag agaatttgag cagcaaattc cttttggggt
     4861 gatagaacaa aataaaggct ttatcacaaa tatcacagaa aagccggtgc aaaaattttt
     4921 agtaagtgca ggaatttatg tatgcgagcc tgaaatgtta gaacttttaa ataaaaacga
     4981 ataccttgat atgccagagc ttattaaact agcgatgcaa aaaggtagag taaatactta
     5041 tttaatccat gattattgga tcgatatagg aagacttgat gagtttgtca aggcaaatga
     5101 ggattttaaa tgaaagtttt aatcataggc tttgggagca taggaaaaaa acatttttta
     5161 gccttaaatg aactgagatt tttagtagat gtgctttcaa aaagctatga attttcgcat
     5221 tttgaaggta aaaactttag actttttaag gatttagaag aattaaattt acaagattat
     5281 gacttattta tcatcgcaaa tatcactaca agtcatttta aaactcttga atttttagat
     5341 caaaatgtaa aagaaaaaat catacttgtg gaaaaacctt tatttcaaaa ggatatggag
     5401 tttattccta gcaacaataa tcaaatttat attgcttatc ttttaagatt tcatcctatg
     5461 attcaagatt taaaacaact catcgatgaa aaagaagttt attttgctaa atttatttgc
     5521 aattcttatt tgcctaattg gcgaaaactt gattataggc aaaattatag cgccaaaaaa
     5581 gagctaggtg gtggggtaat gcttgattta tcccatgaga ttgatttggc tttttatttt
     5641 tttaaagaac tttctttaaa attttctcaa aatttaaaaa tttcagagct tgaaataaca
     5701 agtgatgatt ttactttttt ggcattgagt gcgaaaaata cttcaattca tatcgagctt
     5761 gattattttt caaaattaac tcaaagaaaa attctttttc acaccaaaga aaatagcttt
     5821 gaagccgatt tagttcataa taaattaaat atttatgaca aaactaacaa ttttaaaagt
     5881 aaaacttatg aaaatgatac ttttaaaacc ttacaaaata tgtataaagc gatcctagaa
     5941 aaagatcaaa atttatgtac tttaggagaa gcaaggaggg ttttaagatt gtgtgataag
     6001 gcaagaaatg agtgaaattt tatgcacaat ttgtgcaaga ggtggaagca aaggtgttaa
     6061 aaataaaaat atacgcaaga ttaacgatct tgagatgata gcttatagca ttatccaagc
     6121 taaaaattca aaacttttta aacatatcgt tataagcaca gatagtgagg aaatagccaa
     6181 aatagcgcta aaatatggcg gcgaagtttt tttcaaaaga gaagctcatc tagcaagcga
     6241 tacagctgct aaaattcctg taatgcgtga tgctttgtta agaagtgaag agtattttaa
     6301 atgccaattt gacaccttaa tcgatcttga cgcttcagcg ccgcttagat ctagtgctga
     6361 tatcataaaa gcttttgaaa cattttgtca aaatcaaaat gataatctaa tcaccgctgt
     6421 tcctgctaga cgcaatcctt attttaatct aatcgaagtg caagatggaa aagttgtaaa
     6481 atccaaatca ggaaatttta ccacacgcca aagcgtacct aaatgttatg atatgaatgc
     6541 aagtatttat atatttaaaa gagatttttt actgcaaaat gatagcgttt ttggtaaaaa
     6601 tacagggctt tttatcatgg atgaaagcac tgcttttgat gtagatagcg agcttgattt
     6661 taaaatagta gaatttttga tcaaagaaaa aaacttacaa gcaaaggatt tttaatgcta
     6721 gaaaataaaa ttatatttgt agcaggagct tgtggacgca taggcaaggc gctttgtaaa
     6781 aagatattgc aaaacaaagg catagccatt ttagccgata tcaatgaaaa tcatttatct
     6841 atattaaaaa cagaactcga aaatgagttt aaaaaagagc ttttaagtct taggcttgat
     6901 attacttcta aagaaagctt aaattgtgcc atcgatcaag cttttgaaaa atactctaaa
     6961 atcgatagct ttgtaaattc tagctatcct gtaggaaaag attggggcaa gatagcttat
     7021 tatgaggctt catatgagca aatttgcgaa agtttaaatt tgcatttggg tggatttatc
     7081 ttagcttcgc aagaatttgt gaaatttttt aaaaaacaaa gttatggcaa tatcatcaat
     7141 cttagctcta ttatgggggt ttttgcgcct aaatttgaaa attatgaaaa taccaccatg
     7201 caaagttctt tggaatacag cgtgatcaaa gcaggaatta atcatcttgg tgcttggctc
     7261 gcaaaagagc tttttaatac aaacattcgt gtaaatacct tagcaagtgg tggaatttta
     7321 gataatcaag ctaatatttt tttagaaaaa taccgcaaat gctgcgcaag taagggcatg
     7381 ttagatgcag aagatatttg cggaaccttg gtatttttac tcagtgatga gagcaaattt
     7441 gtcacaggac aaaccttagt tgtagatgac ggatgggggc tctaatgaat aatgaacttt
     7501 ttttaaaaaa tacccaagcg ctttttgaag tagaccaacc tttagcatat gcgttaagaa
     7561 ttttaaaaaa tatcgaaaat tataatatag ataaaaatag tgatggttta aatataatca
     7621 ataagcaaat gcaaaaaata tatgaaaatc ccaatcaaga acttttagat caacttgtct
     7681 attttcaaac tcactataaa aaatatcctg ttttattttt ttatggtttt ggaaatggta
     7741 tgctttataa aaccttgtgt gagaataaaa atcataaaca tatcattgtc tttgaaaaca
     7801 ccttagagtt aatagcttta gcttttagtt tgtttgattt tagtcaggaa ataaaaagtg
     7861 aaaaattaat cctattttat acaccaaata ttacaacagc acaacttact acacttttta
     7921 ctcatccaaa tatttataat tgtctcaaaa tttataaatt gcacatacat tctaattttt
     7981 atcaacaatt atacaaccaa gagataaaaa atttaaacac aaaactaagt gaaactatta
     8041 aatttatagc tttaaattat ggaaatgatc ctaaagattc tttaataggc ataaaacaca
     8101 ccttagaaaa tcttccaaaa gttttaaacc atgggatttt tcaagatttt ctcaaagaaa
     8161 gaaggggtaa agttaaaaat gctatcatag tttcgacagg cccaagccta accaaacagc
     8221 ttcctttatt aaaaaaatat ggtcataaaa tgaccatatt ttgtgcagat tcttcttatg
     8281 cgatacttgc caaagcgggt atcaaaccag actatgtttt atccttagaa agagtgcatt
     8341 ataccagtga attatttaat aatgatttta aagattttga taaagatatt ttatttatta
     8401 taagctcttt aactcacaaa aatactcttc actatcttga aaaaaacaat agaacatata
     8461 tgcttgtaca ccgtcctcta gaatctgcag gaatactaaa gcttgataat tttggatata
     8521 taggagttgg atatagtgta gccaatatgg cttatgaact agcaagtgct ttaagacatg
     8581 aaaatatcat tcttataggt caagatttag cttatgctga agatggaagc tctcatccaa
     8641 aagattatct ttacctagag caagcagata atacagacaa tactactact ttagcatatg
     8701 gaaaaaatgg actagtaaaa acaacattga catggaattt attcagacaa acttttgaaa
     8761 aagacatatt ttggacgaaa gaaaaattaa atatcaacac ctataattgc accgaaggtg
     8821 gagcatatat agaaggcagc atagaaaaac cttttctttg ggcttgtgaa aatttattag
     8881 atgaaagcct caacaaacct ttttcttttc caaaaagttt atcaaaaaaa gaggcgaatg
     8941 ataagatcga taaaataaaa aaaatactac aaagtgctat tttgcaagca aataaattga
     9001 tcaaaagcac tcaaaaagaa cttaataaac ttaaatttga gttaaataga gatgaaatta
     9061 atcttcaaac cttagaaaaa attcgaaaaa aattacttat ctcttttaaa gaatataaaa
     9121 aacttaaatt gtttaatgag ctcagtagag ctttatattt tcacaatgaa tgtgaaattg
     9181 taaaatatga agctatggat gatgaaaacc aaaaaaaata tctatctcac tttttaaaac
     9241 ttcagtataa ttggtttgca caaggacttg gatatctaga tactcaaaac aaaatcatac
     9301 aagaagcttt acaaaattgg cattttgacg atataaaaga atgaaagaat acacaggaaa
     9361 agaaatgaat tttacctcaa atcaacaaga aatatttaag caaaatatca atgctctagt
     9421 taacgaaata cttagaaaaa aattacaaaa aattaaaaat actaaatttg aacttctctt
     9481 gggtaacgat aacctagata tcaatttaag aaatacaaag gataacaccc ttctttatat
     9541 aaataccatt gatgaattaa actctatgtt agaaatttac aatgacaaat atttacttta
     9601 tcctgtgctt tatttctatg gatttggaaa tggaatttta tttaaagcct tgcttcaaaa
     9661 caaacaccgc caacatatag taatttttga aaatgatata gagattcttt ggataatgtt
     9721 tcatcttttg gatttttctt gtgaaattaa aaaaaataaa attattatat ttgataccaa
     9781 tgaaattaat atcaaagatt atgaaatgtt aacccttaca aaaccattta tatccttttt
     9841 aagaatttat tttttagaac tttcaagtag ctattatgaa aaaatgaata aagatatcca
     9901 aaaagttaat aaaaatttaa tggaatactt taaaaaagct atgataggct atggtaatga
     9961 tccgctagat gctcttcaag gtatagaaca atttgttcat aatcttccca aaatgcttac
    10021 tcattctagc tataaggaat taatcaacaa aagaaaaaat ttaagcaaaa ctgctatcat
    10081 tgtttcaaca ggaccaagtt taatcaaaca actacctttg cttgaaaaat atcaaaataa
    10141 agccacgatt ttttgtgcag attcttctta tcctattttg gctaaacata acataaagcc
    10201 tgattatgtc tgcatgcttg aaagaacaag tttaacagcc gaatttttta atcatgattt
    10261 taaggatttt gataaagata tagtctttat atgcgcatct ttgatacacc ctaatgctat
    10321 cgcttatcta gaaaaaaata atagagaata tatactcata tcaagatttt tatcttttgc
    10381 tctctttatt gcttgtcatg attatggata ttttgatcaa agtcctagtg tcgcacatat
    10441 gagctatata atagcggcta agctttgtca taaaaatatc atttttatag gacaagattt
    10501 agcctatgca gaaaatgggg attcgcaccc tcaagaatat caaaactcat caacatttga
    10561 aagtaatata tatcaaaaaa tagaatgtct aggatatggt ggtaaaaatt ctgtaaaaac
    10621 gcattctatt tggctactct ttaaacaaat tatagaacaa cttattttag attatccata
    10681 tattaatact tataattgca cagaaggcgg agcatggata gaaggaacta tagaacaatc
    10741 ttttaaaaca acttgtgata aacttctgct cgatgattta aacaaaccct ttattaagct
    10801 taaaaaacca aatattcaaa aacaaaatga acttatgctc aaatcttatg caaaaatcta
    10861 caaaagcata aaacactgta tagaatttaa aaagcagact ttagctacta ttgaggatat
    10921 agaatctagc tatacaactt taaattattt aagcttagaa gaaagtaagg aaattttaga
    10981 tatcttgatt caaattattg ataattttaa aaccaaacta gaaaatgtta atatggtcga
    11041 tttttatgaa attttaggac cgcttttaat gcaatttgaa ttgaatcttg ctaggattta
    11101 tgttttaaat ccaaaaactc tagaagatag ttttaataaa tctgtattat ggatcaaaga
    11161 acatttagaa tttatacata tggtttatgg acacatagaa gcccaagaaa atgctttatt
    11221 taaaaatatc ataccattag aagaagagct gaaaaaaaga gggtttaaaa aatatttaca
    11281 aaggataaaa aatgcaaaca agtgatattt ttaaaaaaaa tttagattct atgaaaggaa
    11341 atgtatataa gaagttaaaa gaagagctaa aaaattttca ggagcttaga gacttttctt
    11401 ttaccatagg aaaagattct ttaaatataa atctgatttg taaaaaaaac ctaaaaaaaa
    11461 tttaccaaga tccagtacaa gaacttaatg aaaatttagt tttttatcaa caaaattact
    11521 ataatcatcc ttttttattt ttttatggat taggtaacgg aattttatat aaagcactat
    11581 taaaaaatct aaaccataaa aggattgtca ttatagaaaa ggaactagaa attatattta
    11641 tcgttctaaa tttcattgat tttagtgagt atttgttcaa tgggcgcata gctataatat
    11701 attcttctga ttataataac aacaccgcag agcttatttt ttcattgaca aatattaatc
    11761 ttttttttaa aacatatcaa atcaacattc actctgcttt ttatgaaaca tatcaagaag
    11821 atattaaaaa aattaataat atcaatcttc aaactataaa atatcttact ctaaaaaaag
    11881 ggacagaccc ttcagatgct atgttaggaa tcgaacaggc tatttggaat ttaccagaaa
    11941 tgttcaagca ttatagctat aaagaattat tacaaaaaag aaagggttta aataaaaacg
    12001 ccatcattgt ttctacagga ccttcgctca ctaagcaact tcttttacta aaacaatatg
    12061 ccaacaaggc tattatattt tgtgtggact cttcttattc tatacttgct aagcataaca
    12121 tcaagcccga ttatgtatta tctctagaaa gaattccttt aacttcagaa ttttttaata
    12181 atgattttgg agaatttgac aaagacgttt tgtttatttt accaagttta actcacccca
    12241 attcaatcaa atacttaaat aaatttaaaa aagattacat gctaatagct agatatctac
    12301 cttttatgat ttctttaaac cttaaagata atggttatat aggaggcggt atgagtgtgg
    12361 ctcatgtagc ttacgaatta gcaatttcat tagagtgtaa aaatattatt ttaatagggc
    12421 aagatttagc ttataataaa gaagggaaat cccatacaga tgactatata aacctaactt
    12481 tgcacgaaaa ggattttgaa cgagataagg gtcgctttac cactacagct tatggtggca
    12541 agggaacagt tgaaagttct gaaatttgga ctttatttag aaaaatattt gaaaactatg
    12601 caatcaataa taaaaaatgc attaaaatct acaactgtac tgaaggtggg gcaagaatag
    12661 agggaaccat agaaaaacct tttgaggaaa tatgcgaaga aatacttgaa agcgaaatta
    12721 aaaaaccttt aataaaacta aaaaagaaga caaaaaaaga acaatttgaa catatgctca
    12781 aaagctatca aaaaatcaaa aaaaatatac aacttgcact cagttttcaa aaagaatgca
    12841 aaaaaactct tagaaaaatt caaaaaatca ctcttaaaaa cgaatatatt aatatggatg
    12901 atattgtaaa agatatagat aacataagaa acaaactgag caacaaaaga tacttttttt
    12961 tacatgaaat tttaggacct agtctatatc atgaagaaag tttaattgcc cctatttata
    13021 tccaaagtgt taacaatgaa agccaaagac aaaataaaat tctatcttgg atttatgcta
    13081 acgaatcttt aattgaaact ataattgatc tcatagaaag tcaaaacata agaattaaaa
    13141 aagccattat ccctttacaa gatgaattag aaaaaagaaa tttaatctaa agagcaaaaa
    13201 tttgctcttt agaaaaatta ttgtaaaagt tttaagacat tttgttgcac agcgttagct
    13261 tggctcatag catatgaacc cgactgcgca aggatattgt acttagaaaa atttgcactt
    13321 tctgcagcga aatccacatc tcttatggtt gattctgctg ctttaacatt tacctgggtt
    13381 acggtaatat tatttatcgt tacttggagc tgattttgca cagcacctat atctgctctg
    13441 atttgatcaa gattggtaat agcagtttct gctatatcca tcacagccat tgcaccctta
    13501 agtgtagtta cacctgcagt ttcatcatga gcacttactg tacttattct taaagctgca
    13561 aattgagaat tacctgaacc agcagagaaa cctgaaccag cagaaacaac ataggtgcta
    13621 ct
//
LOCUS       DAPIWV010000044        13472 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.045, whole genome shotgun sequence.
ACCESSION   DAPIWV010000044 DAPIWV010000000
VERSION     DAPIWV010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13472
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.045"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            89..478
                     /locus_tag="RJ272_000914"
     CDS             89..478
                     /locus_tag="RJ272_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HDV7382014.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFIFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            460..963
                     /locus_tag="RJ272_000915"
     CDS             460..963
                     /locus_tag="RJ272_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HDV7382015.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            960..1754
                     /locus_tag="RJ272_000916"
     CDS             960..1754
                     /locus_tag="RJ272_000916"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HDV7382016.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFVADKNGFEVF
                     YQLLNLEKRLRVRIKTFVGVKERLQSVAHIFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            1756..2982
                     /gene="nuoD"
                     /locus_tag="RJ272_000917"
     CDS             1756..2982
                     /gene="nuoD"
                     /locus_tag="RJ272_000917"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HDV7382017.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            2979..3206
                     /locus_tag="RJ272_000918"
     CDS             2979..3206
                     /locus_tag="RJ272_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HDV7382018.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            3203..3895
                     /locus_tag="RJ272_000919"
     CDS             3203..3895
                     /locus_tag="RJ272_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382019.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKEVKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            3892..6354
                     /locus_tag="RJ272_000920"
     CDS             3892..6354
                     /locus_tag="RJ272_000920"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HDV7382020.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFIPHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            6347..7345
                     /gene="nuoH"
                     /locus_tag="RJ272_000921"
     CDS             6347..7345
                     /gene="nuoH"
                     /locus_tag="RJ272_000921"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HDV7382021.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVSII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            7355..7996
                     /gene="nuoI"
                     /locus_tag="RJ272_000922"
     CDS             7355..7996
                     /gene="nuoI"
                     /locus_tag="RJ272_000922"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HDV7382022.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMIERALENQNTQEQGENK"
     gene            7993..8511
                     /locus_tag="RJ272_000923"
     CDS             7993..8511
                     /locus_tag="RJ272_000923"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HDV7382023.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            8508..8804
                     /gene="nuoK"
                     /locus_tag="RJ272_000924"
     CDS             8508..8804
                     /gene="nuoK"
                     /locus_tag="RJ272_000924"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HDV7382024.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            8806..10596
                     /gene="nuoL"
                     /locus_tag="RJ272_000925"
     CDS             8806..10596
                     /gene="nuoL"
                     /locus_tag="RJ272_000925"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HDV7382025.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            10598..12085
                     /locus_tag="RJ272_000926"
     CDS             10598..12085
                     /locus_tag="RJ272_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HDV7382026.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLILLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLLFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            12075..13463
                     /locus_tag="RJ272_000927"
     CDS             12075..13463
                     /locus_tag="RJ272_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HDV7382027.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFVILLML"
BASE COUNT         4116 a         1614 c         2652 g         5090 t
ORIGIN      
        1 aatatagaaa gtttagagta aaataaagaa aagtgtaaat ttaatttttg ttgtggagtg
       61 attaaagtgc tttaaaaaag gagaataaat gtctcatata gatgcttcgc atccttattt
      121 tggtattttt ttaatgctag tacttgctag tgttattttt ttcggactgg tttttttagc
      181 ttcaaaaatc ggtaataatt ttgccgcaaa aaatcgcaaa aaattaggac ttggaattta
      241 tgaatgtggt cctattcctg ttaaacaagc taacaagatt aactctcaat ttttcatcat
      301 cgccttaatc ttcatacttt tggatataga agttgtgttt ttatttcctt gggctttgat
      361 ttttaaagat ttaggttggt ttgggctttt agaagttttt atttttatcg tacttttagg
      421 agttggattt ttatatgctt ataaaaaagg agcgtttgca tggcagagca tcaagtaaat
      481 tatgcaagtg gtttgcccgt agttttaact agtgttgata aactagttca atggggcagg
      541 agtaattctt tatgggcttt atcttatgga cttgcctgtt gtgcgattga gatgatggcg
      601 gctgggggtt caagatatga ttttgataga tttggaacga tttttagagc ttcaccacgc
      661 catagtgaag tgatgattat cgcaggaact ttatgtaaaa agcatgctga atttacaaga
      721 agactttacg atcaaatgcc tgatcctaaa tgggtgattt ctatgggaag ttgtgccaat
      781 acaggcggta tgtttaatac ttattctacg gttcaaggag tggatagaat tatacctgta
      841 gatatttatg tgccaggctg tgctccacgc cccgaaagtt ttcagtttgc tttgatgatt
      901 ttgcaaaaaa agatccgcaa agaaaaagca agtcgtaaaa tcgcacctaa aaggttggta
      961 taatgagaaa gtatagcgat aaaaaaaatg ctcaaactca aaattattac aaagatagat
     1021 tttatcacgc gccacacact gtaaaatctg atgttaatga aagtgttttt aaagaggatt
     1081 ttgaagtttt aaaaactcaa gtagaaattt taaattcctt tgtagagctt gatttttggg
     1141 taatagaaat taaaaaagaa gacaatgtta aaaccttgca aatgcttaaa actttagggt
     1201 atttaagttt tacagaggca agtgctattg attttgtagc agataaaaat ggttttgaag
     1261 tgttttatca gcttttaaat ttagaaaaaa gattaagagt gagaataaaa acttttgtag
     1321 gcgtaaaaga gcgtttgcaa agcgtggctc atatttttaa aggagcaaat tggagtgaga
     1381 gagaaattta tgatatgttt ggaattttca tcataaatca tcccaattta aaacgcattt
     1441 taatgcctga tgattggttt ggacatccgc ttttgaaaac ttatccttta aagggcgatg
     1501 agtttgcaag atggtatgag attgataaaa tttttggcaa agaataccgc gaagtagtgg
     1561 gcgaagaaca aagagattct ggttttgctg atgataaaga tacgctaaat tttgcaagac
     1621 tttatcatga agtgccaaaa ggtggtcaaa agaaggaaat ttcctttaaa caagaatatc
     1681 aagaagatga aggcgtggct tttgtaaaaa aagtaaaacg tgatgaagca aaaattttag
     1741 agaaaaggcg ttaaaatgca aattcctagc aagttaaaac cttattatga aaatatagct
     1801 tttgagcaag aagactcaaa aatgattatc aacttaggcc ctcaacatcc ttcagcacac
     1861 ggaaatttac gccttatttt agaacttgat ggagagcaag ttgtaaaagc gcgtccttgt
     1921 ataggttata tgcatcgtgg tatggaaaaa atggctgaaa atatgattta tcaagagttt
     1981 attcctacta ctgatagaat ggattatatc gctgcttcag cgaataatta tgcttattgt
     2041 gcagcggttg aaaagctttg tggtttagag attccacgcc gtgccgcagt gatacgcatg
     2101 atacttttag aattaaaccg tatcacatca catttgcttt ggcttgccac tcatgcgctt
     2161 gatattggtg cgatgagtgt gtttttatac tgctttagag aacgtgagta tgttttggat
     2221 ttgatagaaa agtattgtgg tgcaaggctt acgcattctt ctatgagaat aggtggggtt
     2281 atgcttgatt tacctgagaa ttatttagaa gaaatgcttg cattttgcga taaatttcca
     2341 aatgatttaa aagattatga agatctttta gatgataata gaatttggcg tttaagaact
     2401 gaaaatgtag gtgtagttac taaagaacaa gctttaaact ggggttgtac gggtgtgatg
     2461 ctaagaggaa gtggcataaa atacgatata cgcaaagaag agccttattt gctttataat
     2521 gaagtcgaat ttggcgtgcc ttatgctacg caaggggatt cttatgcaag atataaagtt
     2581 tatatgcaag aatttcgtga aagtttgaaa atccttagac aatgtgccat gctttataaa
     2641 gatactccac ctgaaatttt agctacgcat cctgagtatg taagtgcttc aaaggaacaa
     2701 attttaacgc agaattattc tttaatgcag cattttgttt taatcactca aggtttaaaa
     2761 ccccctaaag gcgaagttta tgtgcctact gaaagtccaa aaggtgagct tggctttttt
     2821 atccatagtg atggtacagg aagaccttat cgtttaaagg ctagaacgcc tagttattgg
     2881 cattgtgcgt tttttgaaga aatgcttgta ggtacttatt tagctgatgt tgtagccatt
     2941 atgggtaatg taaatatagt tttaggtgag atagatcgat gagaagggta gatttaagaa
     3001 aaagcaaaga gctttttgaa gatttagcac aaatcataaa agaagcaaaa caaggtgagg
     3061 ttttagtggt gctttttgaa atcggcgatt tttctcctgt tgaaaaaagt ttttcttttg
     3121 taaaagaaca aggctgtgag cttttaaatt ctttgaaatt taatcaagtc gattggacta
     3181 ttgttataaa aaaggagagg gtatgattta tgataatgct ctttgttttt tagatatgcc
     3241 aagccttaaa aacaaaaatt tatgtgaaaa aataggtgta aatagcatta atatttcttg
     3301 tttggaagat aaaaacttaa aagctaaatt ttacaaatgc gaaattgcaa gtttgagttt
     3361 tgttttggcc ttgctttgta aattaagcga tgaaggacaa ttttgcgatt tagatgaggg
     3421 atatttaagt gctgaatctt gttttggaga ggaagaagca ggcgaagtgc ttgctttttt
     3481 aaaagaggtt aagtatttaa ttatagataa aaatatccat tcttataaag atagtgaaaa
     3541 tatcaaatat tttttgaatt tcttaagtgt aaaatatgga ttaaagattt tagatagcga
     3601 tgaagaagaa tgcgatttta aaaaggcaaa attaaacacc ctaaaagaac tcgataatta
     3661 tgacgggtta gtgcttttta gagcaaattt gcaagataaa aatttacatt gttcaaagca
     3721 atttttacaa attgcaaaat gcaaagatca aagtgaagtt gaaattttag ctaaagattt
     3781 tagttttaaa actaagcttt gtttagatga aaatttacaa ggcaccatag cttttttaaa
     3841 ttatgaaaat aatggttttg attttactcc aattcgcata aaggaagcaa aatgacagtt
     3901 aagattaatg gtatagattg cgcctttgaa gaaggcgaat atatcttaaa tatagcaaga
     3961 agaaatgata tttttatccc agcgatttgc tatctttcgg gctgtagtcc tactttggct
     4021 tgtcgtatgt gtatggttga agctgatggt aaaaaggtat attcttgcaa tactaaagca
     4081 aaagagggta tggttgtaga aagtgattta caaaatcttt gggatgaaag aaatgagatc
     4141 atgcaagctt attgtatcaa tcatccttta gaatgtggag tttgcgataa atcaggcgag
     4201 tgtgaattgc aaaattttac tcataaaagt cgtgtaaatg ttcaaaaaca ttggattaaa
     4261 gacacgcata aaccacataa acattgggga atgattaatt acgatcccgc actttgcata
     4321 gtgtgtgagc gttgtattac agtttgtaag gataaaatcg gcgaaagtgc tttaaagact
     4381 gttcctcgtg gcggagatag tgtggataat agctttaaag agagcatggg aaaagatgct
     4441 tatgcgattt ggactaaatt tcaaaaaagt ttgataggcc ctgcaaatgg tgatacgctt
     4501 gattgttcat tttgtggaga atgtacaagc gtgtgtccaa caggagcttt gataggttcg
     4561 aaatttcaat acacttcaaa tatttgggaa cttaaaagaa tccctgcttc aaatccgcat
     4621 tcaagcgatt gtgagttgat gtattatgat attaagcaaa gcggcattag caatcaaaaa
     4681 gaaaaaattt atcgtgtgag taatgatttt gcctttgcga gtttaaataa ggctgcaagg
     4741 tttgcttttg atacgcaaaa tgaggcggat aaagatgaaa aagcctttaa agaacttgtg
     4801 gagctttttg agaaaaatga aattaaaaac attaaattta atagttttat taccaatgaa
     4861 gaagctttga ttttacaaaa tttaaaaaag aaatttaatc tttctttgat caatgaagaa
     4921 gctttgaaat ttaaagaatt tttacaagaa tttatcgcta attctggtga gttttatagc
     4981 gctaatactc aagatataac aaaaagtgat tttttggttg tagctggaat gcttttaaga
     5041 tatgatgctc caacgcttag ctataaaatc aataatgctt tagtgatgaa taaaggctca
     5101 gggctttatt ttcatcctat ggaagatatg ggtatagcaa aatattctaa aaattttatc
     5161 ccgcacattc ataaaaatgg cgatgaagag caaattttat attttttact tcaaaaattt
     5221 agccaagatg aaggtattaa aactcattta gcagagtttt ttgttagtga aaataaagaa
     5281 atagaagaaa gtatcaacga agaagttgta gaacaagtca tagaaaaaga tgaagaaggc
     5341 aatgaaattc aaaaagaagt aaaaaaagtc gtacctaaaa aagtaaaaaa aatcatagaa
     5401 gtacaacgct ctgtttttgc taaaaattta ggcatagatg aagataaatt agaagattta
     5461 ttgcttaaaa aagcaaattt tactcttgtt gtagggagtg atttttattt tcataaaaat
     5521 gcgaaaaaac ttgctaaatt acttgctttg atccaaaata ctactccttt taaagtcttt
     5581 ttaaatccta cgcatactaa taccttaggt gtggctatga tttgtgattt ggataacaat
     5641 acacaagaag gcaagacttt aggctacaat gaaaaaggtg attttagttt ttcttatgaa
     5701 gagcatgcaa atttagctag tgcgagttta aatcagcaag aaggaacttt tttaaattat
     5761 gataaaagag tggtaccaac taatgctgct ttagaattta agggatattt tttaaatgat
     5821 ttggctaatg ctttaggttt tgatgaggaa tatactataa attatactaa gagactccct
     5881 ataaataaag gtttttctcc gattgatttt gatcatttag acaattttta taccaatgca
     5941 ggcgattgta aaaggggata tgagcttaat ttagaatgtt tcaaacaagt tgctaaaaaa
     6001 gaattcatct ctccaaattt tgaaaattta agcctaaaag aagatgaaat tttgctttat
     6061 agtgctaatc ctagctatca atttggtaga ttttcaaatc gtgctagtgc gattaatgag
     6121 gtgatttttt taggtgtaag tgaaaattta gctaaagaga aaaatttaaa agataaagat
     6181 cttgtaaaac ttaaaataaa agataaagaa ttaagcctta gtgtgcgtgt ggataaggat
     6241 ataaaaaatg gagctttctt gccgtatttt gatgaaaaac ttgacacgct aagctttttt
     6301 gatgaaagat ttgttgtggc gaatttagaa aaattaggag caaaccatga gtgattttgc
     6361 tttttttgct ttagagactt tgattaaatg tattattatc attgcaatat ttgcgagttt
     6421 agcaggtctt gcaacttatg ctgaaagaaa ggttttagct tattttcaaa gacgcatagg
     6481 gcctgatatg gtagggcctt ttgggcttat tcaacttgta gctgatatga taaaactttt
     6541 tactaaagaa gatataatcc cttcaaattc gcaaaaattt atttttgcta tagcaccttt
     6601 gatttctgct atttgtgctt ttgtttcttt agcagctatt cctatgctac ctgaatttac
     6661 tttatttgga agggtgattc agcctatagt ggcagatatc aatgtagctt tgctttttgt
     6721 catcggcact tcaggacttt gcttttatgc ggtgtttttg ggtggacttg caagtaataa
     6781 taaatggtcg attttagggg ctgcaagagg gcttgtatcg attatttcct atgaaagcgt
     6841 aggagcttta gctttgattg ctattataat gcttgtaggt tctttttctt tggtggatat
     6901 taacaattat caaagcgatg gatttttttc ttggcttatt tttaaacaac ctttggcttt
     6961 tgtgcttttt ataattgctt tatttataga gactaataga actccgcttt gtttgacgga
     7021 aaatgatgct gaaattgtag cgggttatgg aacggagtat tcgggtttaa gatggggtat
     7081 gtttttcata ggtgaatata cttctatgat agctggagct attttggtca ctcttttgtt
     7141 tttagggggt tttaatagct tttggattat tcctggttgg attatgatga tagtaaaatc
     7201 aagttttatt ttcttttggt atttttgggc aagagctgct tttccgcaat tgcgtccaga
     7261 tcaagtgatg aaaatgtgct atttgatctt aatcccttta gctgttttaa accttttaat
     7321 cactgctttg acagttcttt tataggagtt tgatatgaaa aattattatt tagtagatga
     7381 gaaaagaaaa actcctgtta gcacttggga gaaaatttca caagctttgc gtagaagcgt
     7441 taaactagag ctttttgtag ggctttttgt gatgatgaga gaattactta agagaaataa
     7501 tagcgctacg attaaatatc cttttgaaaa ggtaaagctt gacaatcgtt accgtgctgt
     7561 tcatcgtttg atgcgtttta tagaaagcga aaatgaaaga tgtataggtt gtgggctttg
     7621 cgaaaaaatt tgcattagta attgtatcag aatggaaact tctttagatg aaaatgggcg
     7681 taaaaaagta gaaaattata gtattaattt agggcgttgt atttattgtg gtttttgcgc
     7741 tgaggtttgc cctgaacttg ctatagtgca tggcacagag tatgaaaatg cagccgagca
     7801 aaggtcttat tttggctata agcaagattt tttaactcct attgataagc ttaaaaatca
     7861 agttgaattt gaaggagcag gaagtcttag aaaggatgca aatttgtggg ttaaaaaaac
     7921 gccaaattat tatgatgtga tgattgaaag agccttagaa aatcaaaata cacaagagca
     7981 aggagaaaat aaatgataga aaatttggct tttgtatttt ttagtgtagt ggttttaggc
     8041 ttttttggca ttgcggtttt aagtaaaaat atgctttatt ctctttctgc tttagcgggt
     8101 ggaatggtat ttttatcggg attttatttt ttacttgatg cagagttttt aggcgtgata
     8161 caaattattg tttatagtgg agctgtactt ggactttata gttttgcgat gatgtttttt
     8221 gatgcttcta aagaatttaa agaacaactt aaagctaaaa aaagtttttt tactttggtg
     8281 gttttaagta cgattttact tttggccatg cttataggtt ttaaatacca aaatatcagc
     8341 acggatttgc ctttaaatga tcctgctttg tttgatttta ataaacaact ggctttagcg
     8401 attttttcaa aatatctttt agcttttgag tttatagcta ttttgctttt gattgcttta
     8461 gtctgtgcta tagtgcttac tcataaagag ctaacaaagg aaaaacaatg atagaaaagt
     8521 attttttcgt cgctatttta atgtttgtca taggacttgt agggatttta aaaagacaaa
     8581 atctcatcat gctttttatc tcaagtgaaa ttttattaaa tagtgctaat ttagccttag
     8641 tagcagcttc taaaatgcac aatgatttaa atggacaggt ttttgcgctt tttatcatgg
     8701 gtgtagcagc ttgtgaagta gctgttggtg tagctttgtg tgtgctttgg tatagaagaa
     8761 aaggcacttt ggaattaaaa agcttaaaag aagtggaggc ttagtatgca aaatttagct
     8821 ttgatttctc tttttagtcc ttttgtagct tttttgtttg caagttgttt tgctttgagt
     8881 gagaaaaaac aatttgtagg gataatttgt tcacttttag tagctttgag tgctttttgt
     8941 tctttgtatt tgcttttttg caatgaagct tttaatgtga gtttgtttga atggtttgct
     9001 ggagtaaatt ttggctttga tatagatgct atttcgctta ctatgatgag tgttgtaggt
     9061 attgtagcta cttgtgtgca tttttatagt attttttata tggctcatga tgaaggtttt
     9121 aataaatttt ttgcttattt ggggcttttt gtcttttcta tgcttttttt agttatgagt
     9181 gataatttct taggactttt cgtaggttgg gaaggcgttg ggctttgctc ttggttgctc
     9241 ataggttttt ggtataaaaa tgatacttat tcttttgcgg ctaatgaagc ttttattatg
     9301 aatcgtattg cggatttggg tatgctttta ggaatttttt ggctttattt gcaagcagga
     9361 actttaaaat atgatgaagt tttttccatg gcacaaagcc tagatcacaa tgctttgatc
     9421 ttaatcgcaa cttgtttatt tataggggct atgggaaaat ctgcacaatt tccttttcac
     9481 acttggcttg ctgatgctat ggcagggcca actcctgttt ctgcattaat ccatgcagca
     9541 accatggtaa cagcgggggt ttatttggta attcgtgcga gtacgcttta tgatttagtt
     9601 cctgaagttt cttatattat tgccttactt ggagcttttg tagcgatttt tgcagcctct
     9661 atggctttgg tggttaggga tttaaaacgc attattgctt actctacctt atcgcaactt
     9721 ggatatatgt ttgtggctgc aggacttggg gcttatggta tagctttatt tcacttagct
     9781 acgcatgctt tttttaaatc tttacttttc ttaggcgctg gaaatgtaat gcatgctatg
     9841 aatgataaat tagacattaa aaaaatgggt ggacttttta aacctttaaa aattacagct
     9901 attttaatgt gtataggatc tttagcttta gcaggaattt atccttttgc aggatttttc
     9961 tctaaagatt tgattttggg atattctttc atttcttttc accatggtat ttttttagtg
    10021 ctcttaatcg cagctttttt aacagcattt tatagcttta gacttttaat gttggtattt
    10081 tttacccctg caagacatga tgaacatcca catgaagcaa gtaaaatcgc acttttggct
    10141 atgagtcctt tgatggtttt agctattatt gcaggatttt tcgaacatag tttttttgaa
    10201 tatttaagca caaaattagt ttttattgat gcgcaaaatc aaattgtaat gatttgtgcg
    10261 agtgtagcag ctattttggg tgcaattttg gctatttttg cttataaaaa ttcttggttt
    10321 aaggaaagta ttgaagaaaa taaaattcat aaacttttaa gtaatgatta ttttattcct
    10381 caattctatc atcaatttat cgtttcaaaa tatgaaagct tatgtgcgat tttaaagcat
    10441 tgtgatcttt atatttttga tagaatagtt gaaaaaattg ctttgtattc tcaaaatatt
    10501 tcacaaaaaa tgattatgcc aaacagctta aacttaatgc ttaggttttt ggtggcagct
    10561 tttgtgattt tgttgatttt agtatggatg gtgtaaaatg ctaaattatt tgatattttt
    10621 tcctttaatt tctgcttttg tggttttgct attaaatcgc ggaggcgtta aggtttttag
    10681 cgttgttgta agttttatga ttttggcttt aaatttggat atttttgcgg attttttaca
    10741 aggggtaagc tttgattata atctctcttt taaaattttg aaatttttta gctttcatgt
    10801 aggagtagac agtattgcac ttgtattgat acttttaagt tctttgatga tatttttaag
    10861 ctttttattt ttgaaactag aacaaaaagc gcttatatct tgtatattct ttttagaatt
    10921 tgctattatg ggacttttta gcgcaaaaga tggtttgttg ttttatgttt tttgggaatt
    10981 ttctcttttg cctttgcttt atattatggg agtttatggt aaagatttta gagcaggggt
    11041 gaaatttttt atctatgctt ttgcgggttc aattttaatg cttgtagcat tgatttatca
    11101 agcttattta aattatcagc ttttaaatat cttcactttt gacttggaaa tttggaaaaa
    11161 taatgcctca gcagtaaatt ttacagagca acttttactt tttggagcat tttttatcgc
    11221 ttttgctatc aaagctcctt tatttccact tcatacttgg gcacctaagg tttatgcaaa
    11281 ttcgcctata cttgtttctg taatgcttgt agtttttaaa atggctcctt ttggattttt
    11341 acttttttgt ttaccacttt ttccagatgc gagtgtgtat tttatgcctt taattgtagc
    11401 tttatgtata gtaagtatcg tttataacgc tttaattgct tatagagcag aaaatattaa
    11461 agaattgatt gcttatagtt ctatttcaca tcttggtgtg atgattttgg gaattttttc
    11521 tttaaatgct ttgggtatta gtggtgcggt tttttatatg tttgcacatg gtattgtaac
    11581 gggagcttta tttttaatgg ttgaactttt ataccaaaga tatcatactt atgatatttc
    11641 tttttaccat tctttagcca aaaaagcacc tttattttca attttcttta tgctcatttt
    11701 acttgcgagt gtttctttgc ctttaactgt ttcttttgtg ggagagtttt taattctttt
    11761 aggtatagca aagattaatt tattttacgc tttgttggca ggtttggtga ttattttagg
    11821 agcgatttat atgttcgcag tatttagaaa aatatttttc atgcaaaaac aaagctttat
    11881 agagggtttt tctttacttt ttagagaaat agtagcgctt gtgtgcattg tagtaatgat
    11941 ttttggacta gggcttatgc caaatatact tttaaagccg atacaaaaag atgtggataa
    12001 tcttataaaa acaatgaata ttagagctgt tgagcaaaat actttagatt ttttatctaa
    12061 aataggagag gcaaatgtta aataattttt taaatttaga acttttaaat ataagcttat
    12121 cttatccatt tttattttta attacaactg caatagttct tttgctttgc tctggttttt
    12181 ggaaatttca tcgatcgttt tatatcggca taagttcttt gtctttgatt gtaagtgctt
    12241 ttttgatttt aaataatgca aatgctcaag gtttagaagc aaaagctttt ttggctactt
    12301 taaataatga tattgtttca ttttatgctt ctttggtgat tttgtgtttt tcatttttat
    12361 atcttttaat gcaaaaagaa gaaaatcagg gtgaatttta tgctttattt ttatttatga
    12421 ttgcatcttt gcttttgatg gtttcaagct caaatttagt acttattttt ataggacttg
    12481 aaagttcttc tttagcactt tatactttaa tagcaatgcg tggaagtgat aatgctattt
    12541 caagtgcgat aaaatacttt agtgtagcgg ctgtaggagc tgggtttttt gttatggctg
    12601 tagcttttat ttatttaaaa acaggaactt tagatttatc tgctaattta gcgttaaaaa
    12661 atgagtttca aaaagatccc atgcttttgg gtgctggagt gatgattttt gttctttgtg
    12721 caatcaagct ttctttggca ccttttcatt tttggcttaa agatgtgtat tatgcagcac
    12781 atacaaattt ggttgctttt atttcagttg tgccaaaagt tgccatgttg gttgtggtta
    12841 ttcgtttgtt tgatttttta aataatacag gttttgaata tatcataata gttctagcga
    12901 ttttttctat gcttataggt gcttttgcgg ctctaagtca aaacaatatc aaaaaaatgt
    12961 ttgcttatag ttctgtagtg cattcttctt tggttttggt agcttgcatt cctttattaa
    13021 aagaacaaaa ttttgatgga attttgcttg ctatttttgg atattggact ttatttgctt
    13081 ttgcaaatta tgctgtattt atgattttaa gcaattatga gaataattct tatgagagtt
    13141 taaatgggct tttggttaaa aaacctttaa ttgctttttg tttaagcatt agtgtgcttt
    13201 ctttagcagg tatcccgcct tttggagtgt tttggggtaa atttatgatt ttaaatacag
    13261 caattttaaa tggatattgg tatttggcgc tttttgtggc tttatcttct gttattatgc
    13321 tttatgcgta tttaaagatt ttaattcatg ctttatttat gaaaaatgat agggttcata
    13381 atattaagtt tagttttata caaaatttta ttttagcttt ttgtgtttgt gtaagcactt
    13441 ttgttatatt gttaatgtta taagagtttt gc
//
LOCUS       DAPIWV010000045        13336 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.046, whole genome shotgun sequence.
ACCESSION   DAPIWV010000045 DAPIWV010000000
VERSION     DAPIWV010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13336
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.046"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            55..720
                     /gene="dccR"
                     /locus_tag="RJ272_000928"
     CDS             55..720
                     /gene="dccR"
                     /locus_tag="RJ272_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HDV7382028.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAREALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            713..1903
                     /gene="dccS"
                     /locus_tag="RJ272_000929"
     CDS             713..1903
                     /gene="dccS"
                     /locus_tag="RJ272_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HDV7382029.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     YQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(1946..3583)
                     /gene="groL"
                     /locus_tag="RJ272_000930"
     CDS             complement(1946..3583)
                     /gene="groL"
                     /locus_tag="RJ272_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDV7382030.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(3604..3864)
                     /gene="groES"
                     /locus_tag="RJ272_000931"
     CDS             complement(3604..3864)
                     /gene="groES"
                     /locus_tag="RJ272_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDV7382031.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            4026..6566
                     /locus_tag="RJ272_000932"
     CDS             4026..6566
                     /locus_tag="RJ272_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382032.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSNLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLEK
                     LTKTRLNGSLDVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIGLPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLTAKAHIIGTQVQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     TGMPNYASGIVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGNFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLNLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
     gene            6575..7186
                     /locus_tag="RJ272_000933"
     CDS             6575..7186
                     /locus_tag="RJ272_000933"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDV7382033.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGVCLSVT
                     KLYEAGFEVELSRESRTHMAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFHISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            7150..7830
                     /locus_tag="RJ272_000934"
     CDS             7150..7830
                     /locus_tag="RJ272_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HDV7382034.1"
                     /translation="MGRSRKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTTKRF
                     VSVVYLKD"
     gene            7832..8035
                     /locus_tag="RJ272_000935"
     CDS             7832..8035
                     /locus_tag="RJ272_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382035.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLHSLINAKDKALLSN"
     gene            complement(8032..9192)
                     /locus_tag="RJ272_000936"
     CDS             complement(8032..9192)
                     /locus_tag="RJ272_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7382036.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKTKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            9314..10039
                     /locus_tag="RJ272_000937"
     CDS             9314..10039
                     /locus_tag="RJ272_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HDV7382037.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSIFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            10042..11424
                     /locus_tag="RJ272_000938"
     CDS             10042..11424
                     /locus_tag="RJ272_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7382038.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLRLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            11428..12234
                     /locus_tag="RJ272_000939"
     CDS             11428..12234
                     /locus_tag="RJ272_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HDV7382039.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFAINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(12178..>13336)
                     /locus_tag="RJ272_000940"
     CDS             complement(12178..>13336)
                     /locus_tag="RJ272_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HDV7382040.1"
                     /translation="NFLNFKNQKHYLIDNALLTHQYIKYNKKNKKYWVLKLQTENFTF
                     YTTSFKDLNLSKNQFLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFL
                     NQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAP
                     IYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVPSFVRSLIMAFCIFYLLCKNI
                     KIINFVTLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFANKFNNLINIILL
                     NIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLINYGDLLNFILDE
                     FFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFIMIVI"
BASE COUNT         4638 a         1776 c         2184 g         4738 t
ORIGIN      
        1 attttgatac aatgatatat atttaagaga tttgaagtta gaaagattta aattatggct
       61 gctaaaattt tacttttaga agatgatttg agcttgagtg agatcattga agagttttta
      121 aacgatgaag gatatgaagt atttttatgc gataatgcac gagaagcttt agatatggct
      181 tatgaaagat attttgatct ttggatttta gatgtaaaag ttcctttagg agatggattt
      241 tcattactta aagaattaag aaaaagcgga aagcaaactc cagcaatttt catgacttct
      301 ttaaacacaa caaacgattt aaaacaaggc tttgacgcag gttgtgatga ttatataaaa
      361 aaaccttttg aacttgccga gttatctatc agggttaaag ctttgcttaa aagagctttt
      421 tcacataaaa atgaagattt tgaagattta ggagatggat ttagatttga atttactaca
      481 caaattcttt accataataa taaagccttg actttaccga gtaaagaaat taagcttttg
      541 tctttattac ttaaaaataa aaacaacttt ttaagcacag agagaatttt tgaagaactc
      601 tgggattatg atgaggagcc tagtgagcta agtttaagag cttatgtaaa aaatttacgt
      661 aaaattttag gaaaagaaaa aattataaat caaagaggca ggggatattg ctatggctaa
      721 aaaagtcatt aggcaaattt tattaatcta cctaacaact acaggtattt ttttaactat
      781 tttttttgca ttatggtatc aaaaattata tgaagaatta gttgttttga agggtgccac
      841 tttgagagaa aatcatagaa acattgttat aagcatctta aattctcgtt ttacccctat
      901 agatataagt gcaaaaaata ttgctcaaag cacagcacta aaatttgcta tatttgatgc
      961 taaaaagatt gtttttagta atatagattt tgatttaaga aaggcaaaga tagagcttaa
     1021 aggtagaggt atttgtgata ataaggtttt tttccttgct cctatgagtg cagatcatta
     1081 ttttttaaga catgctagca atgaagaagt aaatactaac gatggtttgc aaattttaat
     1141 acagggtgaa gatgttggca aagatctttt ttggattaga acgaaagttt ttggttttgc
     1201 tattatggct ttttgcatat tgggtttaat atcttatatt ttagtaaaaa ttgctctaaa
     1261 gcctttggag gataaaatca gcacactaaa tcgttttatt aaagattcaa ctcatgaact
     1321 caatacccca ttaagtgtta ttttgatgag tatagaacaa cttgagtatc aaaatttagg
     1381 agataatgct aaatttacaa ggattaagct tgctgcaaaa agtttgtctc aagtgtattc
     1441 tgatcttgtt ttttataatt tccctaatac cttagaaaca gaaaaacaaa aatttgattt
     1501 aagaatacta cttgaagaaa gattggaata ttttaaagta ttttttgagc aaaaaaaaat
     1561 tacactaaag cttgatttaa atcaagcaaa tatttttgct cctaaaagtc aaatttctaa
     1621 attgattgat aatcttataa gcaatgctat taaatacaat aaaaaaggtg gagtaatttc
     1681 tataatttta aaagccaatt ttttaagtat tgcggataca ggttgtggaa tttcaaagtc
     1741 aaatttaaat catatttttg atagatatac aagatttaat accgatcaag gaggatttgg
     1801 tatagggctt tctttggtaa aaaaagtttg tgatgataat gatattaaga ttatttgcga
     1861 atctgtagaa aatcaaggga gtgtttttaa attaaattgg taatcagcaa ggaaaatcct
     1921 tgctgataag aggttagagc agatattaca tcattccgcc catgccaccc attcctccca
     1981 taccgctcat atctggcata gtaggtttat cttctttaat ttcactaatt gttgcttctg
     2041 tggttaaaag catactagct acagaaactg cattgagtaa agctactctt tctactttaa
     2101 caggatcgat aattccactt tcaagcatat taacatattc accttttgca gcatcaaatc
     2161 ctgtgttttc atctttagca ttttctacgc tatttacaac cacacctgca tcaaatcctg
     2221 cattttcagc aatttgtctt aaaggtgctc ttaaagctct ttcaacgata gctgcgccaa
     2281 ttgcttcatc accctgtaga tcaagtttga ttttagcttt tgctttgata agcgctgcac
     2341 caccaccaat tactatacct tcttcaactg ctgctttagt agcgcttaaa gcatcgtcaa
     2401 cgcgatcttt tttctctttc atttcagttt cagttgctgc acctacttta ataactgcaa
     2461 caccaccact taattttgca agtctttctt gtaatttttc tctgtcataa tctgaagttg
     2521 tttcagcaat ttgtgctttg atttgattga ctctcgcatc aatatttgct ttttcgcctg
     2581 caccatttac tatggttgta ttgtctttat cgatgattac actagaagct tgtccaagat
     2641 cttgtatagt cgcactttca agagttcttc caagttcttc agaaatcact tctccacctg
     2701 ttaaaatcgc tatatcttca agcatagctt ttcttctatc gccaaaacct ggagctttca
     2761 ctgctgaaat attaagaaca ccgcgaagtt tatttacaac caaagttgca agcgcttcac
     2821 cttcaatatc ttcagcgata attaaaagtg gtttgcctgt tttttgaatt tgttctaaaa
     2881 ccggtaataa atcttttaaa tttgtaattt ttttatcaaa aagcaggata taagggcttg
     2941 aaagctctac tgtcattttt tctgcattag tgataaaata agggcttaaa taacctctgt
     3001 caaattgcat accttcaact acatttaatt catcattgat tgattttgcc tcttcaacag
     3061 tgataacacc atctttgccc actttttcca tagcatcagc gattaaattt ccgatttttt
     3121 catcagagtt ggctgagatt gtagcaactt gtgcaatttc ttttttatct tttacttcgc
     3181 gagaaagttt tttaagttct gctactatag cttcgcaagc tttatccata ccgcgtttta
     3241 cctcgatagg atttgcacct gctgtgatat ttcttaaacc ttctttgaaa attgcatgag
     3301 ctaaaaccgt tgcagtagtt gttccatcgc ctgcttgatc agctgtttta ctcgctactt
     3361 ctcttacgag tgaagcaccc atattttcaa gactatcttt aagctctact tctttagcaa
     3421 cacttacgcc atctttagta atgcttggag caccaaagct tttttggatt aaaacattgc
     3481 gtcctcttgg ccccatagtt acttttaccg cgtcattaag ttttttaacg ccctcataaa
     3541 gtttatttct tgcttcatct gaaaaaataa tttcttttgc cattttttat ccttttttat
     3601 aaattatttt aaaattccta agatatcatc taaatttaaa actaaatatt cattattatc
     3661 aagtttaatt tctgttccac cgtatttagc aaacacgatt ttatcaccat ttgcaatatc
     3721 agtgatttct ttacttactg ctactacttc acccattaaa ggcttttctt tagcattatc
     3781 tggtataatt atgcctgagg ctgttgtttt agtttcttct acgcgtttaa ctagaacacg
     3841 ctttcctaaa ggttgaaaat tcatttttgt ccatccttaa aaatattgat tttagcactc
     3901 ttttatttag agtgataata tcatactata aaaaatgaat tttgtcaata ctttaaatta
     3961 aaatatttat aaaagtttag ttttgtagac taaagttatt ttataaaata aactaaagga
     4021 taaaaatgaa aaagattttt tatggagtta tagcttttgt tgttgtgctt ttgattgcta
     4081 tttataccat acttttcaca agttttggta ataatatagt ggcaaatata gcgcaaaaaa
     4141 agattaaaga aagtgcggga ttagatgtaa atatcacgca ttttaattta cgtttttcaa
     4201 atcttgaatt gcaagcaaat atcgcaaata tggcagattt taatcttaag ggagctttga
     4261 gtccttttaa gcttggattt gatcttgact atcttatttc tttaaatcaa aattatgcta
     4321 aaaatttagg tttaaattta aatcaaaacc tttcttttgg tggtaagatt caaggtaaag
     4381 caagtgattt tactttagat ggaaagggtt atttactagg ttcaaatgta cttttaaatg
     4441 caagaatgta taattacagc cctattgctt taaatttaga tgcgcaaaat cttaagatag
     4501 aagaaatact tcatctttta tcttacccta gttacgctaa aggtttttta aatgctcaag
     4561 caaaaatttc agcacagaat ttaaaacctg atggaaatat catcataaaa cttgatacaa
     4621 gttatataaa ctatgaggcg ataaaaaaag atttttcttt agacttgcct ttaaattcta
     4681 atcctaaagc agaaattttg gccaatgtta aagaagataa gatttatgct gtaagtaaaa
     4741 tttacaatga ttatcttaac ttacaaaccc aaaaaactct ttatgatatt agcaagaatg
     4801 ctttaagcac tgattttaat ttaagtattc cttctcttgt aaagcttgaa aaacttacaa
     4861 aaactagact aaatggtagt ttggatgtga taggtcaaac aagtgttgta aataatgcct
     4921 tatcaagttt aaatgctcaa gttatcggac ttggtggaga ggtaaaggca agtttgaaaa
     4981 ataataaaat ttttgcagat attaatgaag caagtttgga aaaattatta gctcttgcag
     5041 gatatggagc tttagtttct ggaaatttaa atgctaaact tttaaatgcg gatttggatt
     5101 tttctaattt cgatcttgag gcaaaaataa acaatgcaaa gattaacacc aatgagctta
     5161 aaaaaattgc taaaatagga cttccaaata caatttttag tcttgatgct aaagcaaatg
     5221 caaaaaatag taatatttct tacaatgctt tacttgcttc aaatttactt aatatcaaaa
     5281 aacttcaagg aacttataat ttaaaaaata gtgagttaaa tacagattta aatgctttta
     5341 ttgatgactt gtctcagttt agtgctatag caggacaaaa attacaaggt aaggcagatc
     5401 ttactgcaaa agctcatatt ataggcactc aagtacaaaa tttaaatgca aatgcaaatt
     5461 tggcagatgg tgtaatcaag gctgattcaa atggtaaaaa acttgattta aacattgata
     5521 aacttgattt atctaaactt tttgttataa caggtatgcc aaattatgcc agtgggattg
     5581 ttaatgcaaa agttaattta gataatatcg attttaacaa tcttaatggt aaagcaaatt
     5641 tagaagctaa gggtatttta aatgctgcaa ctttaagtaa aattttaaat aaaaattttc
     5701 caaacaatac aagttatgat ttaaatacca aaattaattt taaaaacaat atcgctcaat
     5761 ttgattctgt tttaaattca tctttagctg atcttacaaa actacaagga aattttgata
     5821 taagtaagat gcttttaaat tcggatttta atttaaagat aaatgatttt tcaaaactag
     5881 gctttttgtt agatagaaaa cttaaaggta aggcagaatt taatggaaag gtaggttttg
     5941 ataagagttt aaattttgtt gtaaatagtc caaatttatt tgaaggaaaa cttcaaagca
     6001 catttaaaga taacctttta cttgctgatt taaacggagt ggatttaagt agtctagctc
     6061 agggtttgga ttttatggat atttatcaag gtaaggcgga catgaaggca aattacaatc
     6121 ttttaagcga agaaggcgag gttaatttgg atatgaaaga gggtaaatta aaaccaaatc
     6181 ttattaccaa tgctttaaaa attttaacac taaaagatat taccaatgat gtttatcgca
     6241 ctgctaatgc taaagctttg attaaaaaag aaaatatcaa gcttaatctt aatatgcaag
     6301 cagatcgttc ttatatttta gtacaatcag gagctttaaa ttctaaaagc ggggctttaa
     6361 atttgccttt tgatattaaa ctcgatagag ctaattttaa aggaagtatt acaggaacta
     6421 cggaaaatcc taaagtaaat ttaaatgcag gaagcgtgtt aaattctatt aaaaatgtag
     6481 tgggtggcgg tgtgagtgac ggtgctaaaa gtactggcga taaagttgat aaagcggtga
     6541 ataaattatt aaataagatt ttttaaggta aaaaatgttt aatggactca taagagaaat
     6601 tgctaaagtt caatcttatc aaaacaatac tttaagctta aaagcaaaat atcgcccaaa
     6661 tcttggcgat agcatagccg taaatggagt ttgtttaagt gtaacaaaac tttatgaagc
     6721 gggttttgaa gtggagcttt ctcgtgaaag tcgcactcat atggctatag agaatttaaa
     6781 agataaagtt catatagaac ctgctttaag atatggcgat agaatcgatg gacatcttat
     6841 gcaaggacat attgatttta tcggcacact tgaaaagatt caaaaagatg aaaatggagt
     6901 agattttcat atatctttac ccaaagaagc tatgaaattt atggcagaaa aaggaagtat
     6961 agctgttgat ggagtaagtc ttactatcaa tgaaatttta aaaaatggta ttaggcttac
     7021 tattattcct attaccttta aagaaacgct ttttaaagac tatcaagtag gtagaaaaat
     7081 caatatagaa agtgatttac ttgctcgtta tatttatgca caattacaag gtaaaaacaa
     7141 aggattatca tgggaagaag tcgaaagaat ttcttatctt tattagaaaa tgataaagtc
     7201 ggtatttttt gtgcttttga taaggattat aatgttttta gagctaaaat tcataatgag
     7261 aatttatttt ctcatttagg ttttaaagat attgaaaaat gtgtttttat ggatcaaatt
     7321 cattctcata aagttatcat ttatgatgaa aatttaaaaa atctcagttg tgatggactt
     7381 ataagcaagg aaaaaaatat cgctctttgt gttttaagtg cggattgtct gcctttgatt
     7441 ttatatcatg aaagtggtat tatagcagct ttgcattcag gtagaaaagg aagctttgaa
     7501 aatatcctaa aagaatgtgt tgatcaaatt actatgcaaa attcacattt agataagaat
     7561 aaatttcatc tttttatcct gcctggaatt tgtgctaaaa attatgaaat agatggagaa
     7621 attttagaat ttgctaaaaa agaatttaaa gaatttgttc aagatgataa acttgattta
     7681 aaagctttag taaaatttca agcgcaaaat ttaggcattg aaaatattaa agattgtgga
     7741 atttgtagct ttgatgatga gagttttttt tcttatcgtc gtgataaaac gactaagcgt
     7801 tttgtgagtg tggtttattt aaaggattaa aatgtatgaa agaaaagatt taagggtgtt
     7861 aaaaatcatt caaaaagcta gagaatttgg cgatggagat ttgttaaatg aagctttggt
     7921 gaaacaattg attgatgcag atttttgtga aattaatgaa aaagaaaaag aagagcttgc
     7981 aactcttcta cattctttaa tcaatgcaaa agataaagcg ttattgagta attaaaattc
     8041 tatatagttt tcaaaatctt cttcttttgg aggattaggt tgattcgagg ctagggcttc
     8101 tttaacaacc tgctcgtatc cagctatgat atgtttaaaa ttctctttcg tttttccact
     8161 aagttctgat ttggcgattt ttacaacaga tgcaggattt atagctttat tatttaaata
     8221 tactccaaaa tgcaaatgag gacctgtgct catacctgtt gaaccaacat atgcaattac
     8281 ttgtccttga tttacctttt gtccgttttt aatttttgca aaacgactaa gatgagcata
     8341 taaagtcata taacctgagt catgcttgat ttgaattaca tttccataac caccttttgt
     8401 gcctataaag gttactactc ctttgccagc acttttcaca ggagttccag taggtgcagc
     8461 atagtctata ccaagatgag cacgatagcg ttttaatata ggatgatatc ttgctgttgt
     8521 aaaaggagag gaaattctag tgtagttcac aggttttgta agtaaaaaag attctaattc
     8581 tttaccatcg cgatcataga atatatcatt ataagaaaag acttctctag cgcttttatt
     8641 gatttctacc attgccattt ttatatttat atcaccccaa agtttaccca tgcgtctttt
     8701 ttgttcataa tatagggtta cttcatcacc tttttggata ttgcgaaaat ttatacttcc
     8761 tcgaaaagca cgaaccatag cacgagctaa agtactgcta ccactttcct catagacatc
     8821 ttgataggca gaacttttaa tggttaaatg taaaattcta tcttcttttt gataagatac
     8881 aggagtaaaa gcaagagtgt attgtccatc tttatcttta tagatatgaa tttgtaaatc
     8941 atcactaatt ggaattaaaa cttgttctat gttgttgttt tcatctttta aaacttgata
     9001 ttttatttta taggctatat cagaagcaag ttcttgatct tctctatcaa gtccataata
     9061 aagtgacata ggtatggaat ttctttgtaa gaatttaagt aaggtatctc cattatccca
     9121 agttagctct tcaacactta aagctgcaaa actttgaaca acaaaaataa ataaaagcaa
     9181 taattttttc atgagatgac cttaattttt aaaagaattt tgaaatttga aagctatatt
     9241 ttactttatt tttcttacaa ttgcttaaca aaaaaggatt ataattctat aaatttttat
     9301 ttaaggagca aatttgttta aaactatagt gtgtttttta gctttaaacc ttagcctctt
     9361 tgcggttgga tttgatttaa aacctataaa aagtgaactt gtaaaagttg atgatattta
     9421 tggttatatt aaagatagtg atgatataaa actttattca agtggcgtag tagtacaaca
     9481 ttttagcaat tcgcaaagta tcatcgctag agcaagtgtt atagataaaa aaaatggttt
     9541 ggcaaaatta gaatttagca ttttctcagc tcttaagcaa gatgctttgc ctttgccaaa
     9601 tgttttacct aaagtaggtg atgaggttgt tttaaatttt ctttatgata gaggattggt
     9661 aattgctcct gatgaacaaa cttataatga acttgttaga gaatttccgc agatatattt
     9721 tacccatatt gacatttttg gagcacaatt aattagaacg gctactcttt ctcctaagcg
     9781 ttcagatctt aggcaatttt gtgatgataa tgcggttggt attttggttg tagctttgga
     9841 aaatcaagca gaagttgtgg attgtcaaga ttttaataag ctttatgaag tgcctataag
     9901 caaaccaatt agcgttcagg ttccttttta ttctcgtata ggtggatata aaagtaattt
     9961 ttttgatttt aactctcaag aaataggaaa ttattataga tattatgatg ctttgattaa
    10021 tcttcctaag gtgcaataaa catgaaaaaa gaatttgaac aatattttaa acgattttta
    10081 ggagaagaaa acgcttattt tgatgaaatt cacaaaagag cttatagcta tgatgcgaca
    10141 aaaaaacatt atttacccga tggggttctt tttccaagaa atgaagaaga tattgctcaa
    10201 attttaaaat tttgcaatga aaataatatc atagtcatac ctcgaggctc aggatctggt
    10261 tttacaggag gagctttagc tgttaatggc ggggtggtgc ttgcttttga aaagcatatg
    10321 aataaaattt tagaaattga tcttgaaaat ttagtggctg ttgtgcaacc tggggttatt
    10381 aatatacatt tacaaaaaga agtggctaaa tatggacttt tttacccacc tgaccctgct
    10441 agcatggagt attcaagctt agggggtaat gtaagcgaaa atgctggggg aatgagagct
    10501 gcaaaatatg gcattacaaa agattatgtg atggctttaa gggctgtttt gcctagcgga
    10561 gaaatcattc gtgcagggaa acgcactatt aaagatgtag caggttataa tttggcagga
    10621 attttaatcg ctagtgaagg ttctttggca gttttaagtg agcttacttt aagattaata
    10681 cctttgccta aatttaaaaa aactgctttt gctatttttc caagtgtaaa aagtgctatg
    10741 aatgcggttt acaaaagtct tgctagcggt gtaagtcctg tatctatgga atttttagac
    10801 aatcttagca ttagagcggt tgagagcaaa tttaataaag gtttgcctat agaagctgga
    10861 gctattttga ttgctgatgt ggatggtaat gttaaagagg ctattgatga ggatttaaga
    10921 aatttagaat attatttttt agaagctggc gctagcgaat ttaaaatagc aaaagatgaa
    10981 caagaaaccg cagatatttg gtttgctaga agaaattgtt ctcaaagcat tgccatgtat
    11041 ggaactttaa aacttaatga agatattaca gttccgcgtt ctaaactacc tactttgctt
    11101 gaaggtatag atgagatttc taaaaaatat ggttttaaaa ttccttgttt tggacataca
    11161 ggggatggaa atgtgcatac taatgttatg gttcctgata aaaatgataa agagcaggtg
    11221 aaaaaaggct atgaagctgt ggaagagatt tttaaattaa cagtgaaact tggaggaact
    11281 ttaagcggag agcatggtat cggactctct aaggcacctt ttatgaattt agctttttct
    11341 gaagccgaaa tgaatttaat gagaaatatt aaaaaagctt ttgatccaaa taatatacta
    11401 aatcctttta aaatgggact ttagaaggtg aaaaattttt ttactatttt actaaatttg
    11461 cgtgataagg aaattttaaa ttatgcagca gcgcttagtt tttatactgt attatcttta
    11521 atacctattt tatttgtatg tttttctgtt tttacgcaaa tttccagttt taaagcttat
    11581 tatgaaaaag caaagcaagt aatttttgct tttttaatac caacgcaaca agatgttgtt
    11641 gctacctaca tcgatacttt tttaaaaaat agtgtaaatt tgggtattgt aggtcttatt
    11701 gctatggcat ttacttcttt agcttttttt tcaggctatg attttgcaat caatcgcatt
    11761 actaaaaatg aacctaaagg actttggcaa agtattagtt cttattggac tcttttaact
    11821 cttgttcctt tggggcttgg gcttagtttt tatatttcag gttttatcca acaaacttta
    11881 gatgattata aaatagggtt taattttttt gaaattttac cctttgtaat tatttggggt
    11941 ttatttttta tatcttattc aagttctgtt cataagggaa ctcttaaaag tttagcttta
    12001 gtatcttttg gagcgggtac tatttggtat ataggaaaaa atttatttgt atattacgtg
    12061 gtatataata aaacatacgc tagcgtttat ggatcttttt ctactatttt attctttttt
    12121 atttggattt atatttcttg gattatttat ctttttgggc ttaaactcta ttattttcta
    12181 aatcacaatc ataatgaagg gaataaaatt cgcaaaaata caaagaaaag ctagatattt
    12241 aaatcgcaca gagattaaag aagcaataag ataacttata aaaatccaaa atgggatatg
    12301 gatattagtt ccataaattt taaatttaaa aaattcatct aagataaaat tgagcaaatc
    12361 tccatagttt ataagatgca aaaataatac taaaggataa aatattacaa aaattccact
    12421 caaaataata cctaaaattt gttggtagct tataagtgga aaaaaataaa gcacaggtaa
    12481 aaccatagca aaaaaagtcc aaatattaag caaaataata tttataagat tattaaattt
    12541 atttgcaaaa tgatgcatat ataaaaaaat ataaaaaaca cctaaaatag aaaataaaaa
    12601 tccaatacta aataaaagtc tagggtaaag agaaatgcac aataaaatac tacaaaaaag
    12661 cgtaacgaaa ttaatgattt ttatattttt acacaataga taaaaaatgc aaaaagccat
    12721 aatcaaggag cgcacaaaag aagggacaaa tcctattaaa caagcataag ctaaaagtag
    12781 tgcaaaaatt aaaatactta aatctaaacg taaatttcta taaggaaaat atcttttttg
    12841 gaaaaaacta taaattggag ctaaaataaa gaaaattaaa ctaaaaagta agcctatgtg
    12901 ataaccgcta attgctataa ggtgtgctat accgtagtaa tttacatcgt ttctaagctc
    12961 taaagatatg ggcagtgcaa aaaataaagc accataaaat tctttaatct tttcatttgt
    13021 atgttgattt aagaagtaag atataatggg attgtattct ttttctttta atttttcaaa
    13081 atcataagaa ggtgcgtaaa aacttttact cagatagtct ttaaagttaa tattatgggt
    13141 gataattcta aggcttaaaa attgattctt gcttaaattt aaatccttaa aacttgtagt
    13201 ataaaaagtg aagttttcag tttgtaactt taaaacccag tattttttat tttttttatt
    13261 atattttata tattggtgcg ttaatagagc gttgtctata aggtaatgtt tttggttttt
    13321 aaagtttaaa aaatta
//
LOCUS       DAPIWV010000046        13006 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.047, whole genome shotgun sequence.
ACCESSION   DAPIWV010000046 DAPIWV010000000
VERSION     DAPIWV010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13006
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.047"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..158)
                     /locus_tag="RJ272_000941"
     CDS             complement(<1..158)
                     /locus_tag="RJ272_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382041.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNP"
     gene            complement(172..666)
                     /locus_tag="RJ272_000942"
     CDS             complement(172..666)
                     /locus_tag="RJ272_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382042.1"
                     /translation="MKEVKGGYITYLKRLSDNEVIAFAKPDWNLELTLFQDSNGDQYY
                     WNREGLVRFGGMCGIETTNCLVNGKHSYINQKRLWETMSIVGDDPYRNFLGYTVKRNI
                     GISNLGKRFVYFSYGVAVINEQSGSWYRVKSSPVLNNYRVVKEISSNYKDFLERYLGG
                     YSIK"
     gene            1097..1949
                     /locus_tag="RJ272_000943"
                     /pseudo
     CDS             1097..1949
                     /locus_tag="RJ272_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1934..2533
                     /locus_tag="RJ272_000944"
     CDS             1934..2533
                     /locus_tag="RJ272_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HDV7382043.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLNDAVKKLDFQSNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHEGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(2582..3424)
                     /gene="fliY"
                     /locus_tag="RJ272_000945"
     CDS             complement(2582..3424)
                     /gene="fliY"
                     /locus_tag="RJ272_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HDV7382044.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(3421..4500)
                     /gene="fliM"
                     /locus_tag="RJ272_000946"
     CDS             complement(3421..4500)
                     /gene="fliM"
                     /locus_tag="RJ272_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HDV7382045.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            complement(4500..5192)
                     /locus_tag="RJ272_000947"
     CDS             complement(4500..5192)
                     /locus_tag="RJ272_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HDV7382046.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            complement(5173..5529)
                     /locus_tag="RJ272_000948"
     CDS             complement(5173..5529)
                     /locus_tag="RJ272_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382047.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            complement(5548..6414)
                     /gene="flhG"
                     /locus_tag="RJ272_000949"
     CDS             complement(5548..6414)
                     /gene="flhG"
                     /locus_tag="RJ272_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HDV7382048.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            complement(6407..7861)
                     /gene="flhF"
                     /locus_tag="RJ272_000950"
     CDS             complement(6407..7861)
                     /gene="flhF"
                     /locus_tag="RJ272_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HDV7382049.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            complement(7871..8344)
                     /gene="folK"
                     /locus_tag="RJ272_000951"
     CDS             complement(7871..8344)
                     /gene="folK"
                     /locus_tag="RJ272_000951"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDV7382050.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(8347..8826)
                     /gene="aroQ"
                     /locus_tag="RJ272_000952"
     CDS             complement(8347..8826)
                     /gene="aroQ"
                     /locus_tag="RJ272_000952"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDV7382051.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            8917..10146
                     /locus_tag="RJ272_000953"
     CDS             8917..10146
                     /locus_tag="RJ272_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7382052.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            10134..11030
                     /gene="sppA"
                     /locus_tag="RJ272_000954"
     CDS             10134..11030
                     /gene="sppA"
                     /locus_tag="RJ272_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDV7382053.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            11109..12140
                     /locus_tag="RJ272_000955"
     CDS             11109..12140
                     /locus_tag="RJ272_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HDV7382054.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(12382..12732)
                     /locus_tag="RJ272_000956"
     CDS             complement(12382..12732)
                     /locus_tag="RJ272_000956"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382055.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(12708..13004)
                     /locus_tag="RJ272_000957"
     CDS             complement(12708..13004)
                     /locus_tag="RJ272_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDV7382056.1"
                     /translation="MLLDKLIPTWNEKYSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT         4187 a         2035 c         1965 g         4819 t
ORIGIN      
        1 ggattatact caaatttttt tccacgataa ggcaaagcac cttctcctgt tataacggct
       61 actccgtgtt tgttgatttt aaaatcaata tttttatctt gtttaaaatt tgaagtgtta
      121 taatcatagt ttaaatttga gtttagacta tttatcatta gtttttcctc tttacttgat
      181 agaataccca ccaagatatc tttctaaaaa gtctttatag tttgaactga tttccttaac
      241 tactctgtaa ttattcaaaa caggacttga ttttactcta taccaagaac ctgattgttc
      301 gttgattaca gccactccat aagaaaaata cacaaatctt ttccctaaat tagaaatacc
      361 aatatttctt ttcacagtat atccaagaaa gttacgataa gggtcatcgc ccactatact
      421 catagtttcc caaagtcttt tttgattgat ataggaatgc ttaccattaa ccaaacaatt
      481 tgtagtttct ataccgcaca ttccaccaaa tcgaacaagt ccttctctat tccaataata
      541 ttgatctccg ttactatctt gaaataaagt taattccaaa ttccaatcag gtttggcaaa
      601 ggctataact tcattatcac taagtcgttt taaataggtt atatacccac ccttcacttc
      661 tttcatctct tcaaggctga gttctttgac acccgggctt gtatcgctta aggcaccttt
      721 tgtgagttta gctaaaaaat cctcagcaaa aacagaacta gtcataaaga agttaaagct
      781 aataaagcaa aaatcttttt cattgaaatc ctttcataaa ttctttttgt aagttcttta
      841 aaactactat cgacttattc tagcaaaagt ttaatcttgc tttgaaagtt aagtgaattt
      901 tctttaaata cttaaaattt tattctcggt ttgtttgctt ttgtaataaa ttttcatttt
      961 tatcttaaat tatattaagc aagtaaaaat atttaaagat tttaaaatac tttatttaga
     1021 ataataaact tttcaatatc aaggattaaa ttttaaaatt aacttgagct gattatttaa
     1081 aatgtaagga ttgacaatga aaaaaatttt cttaacattt atggttttag ttaattgtgt
     1141 ttttgctagc gatgaactaa atatagacag tttatttaaa aagcaaatag gcttaagaag
     1201 cattgcaagc ttttctttac ttagcacagg aaacgcaaac tcgtattctc tttatcctaa
     1261 tataacaata ggcggagatc ctacaatttg gaatgataca aagcaagtgt ttttaactca
     1321 aactttcatt tataccctaa cacctaagtt tgacatactt atttcagggg gtggaagcta
     1381 tgcaagacaa gaatatacaa attttttcac aaatgcatat tcccataaag atcgcatagg
     1441 atttgataat ctatggctag gttttattta tacaggcgat agcattgcag atttaattcc
     1501 acaaattacc tttcaaactg cagttgttca aagagaaaaa gcaatcaatc aaaccaaaaa
     1561 cttttatctg aaatcacaaa gcttacaagc tagtttgagg ggatatagcg atcctgtttt
     1621 atagtattta tacaggattt ggttataatc aatcaagaaa atttaaaacc cttaaaatag
     1681 agtatggaaa tagtatttat gtgggtgggg atttatctat tattctaagt cctaaaatta
     1741 ctttagattt aggagcagag caaagatttc aaatgaaaca aaaaatcaat ggctatcaaa
     1801 attctgaagt gcgttctatt ccaactttaa gtttaggttc tacttatagc attaattcag
     1861 ataccgcagt ttctgttaat gctagttttg gaggaagctc tgcttctcct gatagcatat
     1921 ttgggataag cttatggaaa aaattctaaa aattttatta tttttaccca ttcttgcttt
     1981 gagtacaaaa gccgaatggg tagttaagtc ttatcaagaa attaaaaacg aaagagtaat
     2041 aagacaaact tatgagcaat cttgtggtgc ttcatcttta gcaactttac ttaatatact
     2101 tgatgatcaa aaaaagtttg atgaacttga acttttaaag attatgagcg gacaagaact
     2161 ttatacggat atggtaagct ttgcagattt aaacgatgca gttaaaaaac tagactttca
     2221 aagcaattca tatcaaatca atagagaaaa cttggataaa cttgtaaata ttccaatgct
     2281 tgtaaaaatt gaagatgatc cacgctttcc acattttgtt ataattatca atcatgaagg
     2341 taattattta caagtgcttg atccaagtca tggagaatat ataagttcta aaagtcaatt
     2401 ttttagtatt tgggatagat ataataaagg tggttatgct ttaattgttg ctcctaaaaa
     2461 agagctaaaa ccttttaagt taaacactcc aaaatcttta cattttgatt tcagcccttt
     2521 tagtttgttt tagttttaat tcgtttatat ttattattct taatttgtag gctaaaactt
     2581 tttatcttag ttgttctaat ctttcttttt tagaaccaat ttctgtaatt tgaacgccga
     2641 agttaccatc gacaattact acctcgccat aagcaattct tttatcccca attaaaattt
     2701 caagcggatc gtttgcaagt tgattaagct ccacaactga gcctatatcc atagttaaaa
     2761 catcttttaa aagcattttt ttattgccta tacgcacacg aacaggcaaa cgcacatcca
     2821 tgataagatt gatattttta agctcttcgc taagcattat cgctttttct tcagtattgt
     2881 gattagaatc agtgcttgta tttcctgttt cagcaggttt cccgcttagg atgttatgga
     2941 gtgtttgatc catggctaaa gaaacttgtt cttctaaatc gcctattttt acatcatata
     3001 aaaataattt tttaaaatct ttaaaatcta cgctttcagg cacaaattca caagattcta
     3061 tgctaaaatc catttttgga atgtcttttt gggctcctaa ggttgtagaa aatgctgaaa
     3121 tgatattttg gatggcttct ttagctgcat ccatttcatc aggacctagt ttatcgtttt
     3181 tggtgatctc ttcttcaccc atcatccatt caccaatagc actcattaaa acagcaccag
     3241 ctaaaattcc tatttttcca ccatttgcta tattaaatat agcatacact aaaggtgctt
     3301 ttaaagtatc gcttgtattg acatcaaatt ctttatattc gctaaattca gcactttttc
     3361 ctgttaaacc ttcaatggtg ctgatgcatt catttgtaaa catttttaaa aaatcattga
     3421 tcatatttct tcatcctcct cttcaggctc atcataaaca ctggctttag ctttacgctc
     3481 ttcttcgtat ttttccaaaa tttctttgat ttcatcttta tctgtgcgta taagttctaa
     3541 aattttaata gattttctaa aacgatgcaa tccaatttgt gctaagaaaa catctttttt
     3601 atcgatactt actatagctt tatcgtctgc ttctctatca agccttaaaa tatcgccttg
     3661 tttaagttct aaaaattcat gaacattaat taaggttttt cctaaaattg cctcatatac
     3721 cacttcagca cgaccgatta aagttttaag ctctttgtta cgtgattttt tggctgaggt
     3781 ttcacccatc ataatatcac ggtttgctaa acggcttaat atactttcta aatgtactac
     3841 aggatagcag atatttacca ttccgcttga atttcctatg atgatttcca ttactaccat
     3901 gataacaatc tcattttgag atacgatttg cacaacattt ggacttgatt ctttagcttc
     3961 tatactagga taaatttcag ttacggtagc ccagctttct ttaagtcttt gcataatgat
     4021 acgcaaaata gaatcaagta aattaagctc aatatccgta agctcacgcg aagcttcata
     4081 gctatcgcct tgaccaccta aaagcctgtc tatcatagga aaagctatgc ttggattgat
     4141 ttctaaaaca cagtttccat ctaaaggttt gatagaaaaa acattaaaac ttgttgggct
     4201 tggcaaagac attaaaaact ctccataagt catctgatcg actgaatgaa gtttagtttc
     4261 aacaatactt ctcatcatcg atgaaatttg agaggctaaa tttcttgcta atttatcatg
     4321 tatgccttta atcgtcctaa gttgttcttt tgaaactctg ttgggacgct taaaatcata
     4381 tacaacgata tttctttcat ctttttcatc ttttgaattt gaggctatgg gtgtgtcggt
     4441 gttatcatcg acaacttcaa gtagagcatc aatttcttct tgggagagta tctcagccat
     4501 tacactagcc tttctctaag ttttttaaga agttttttgt gaatttgtga aattctgctt
     4561 tcactgattt gtaaaatttc actgatttct tttaggctta attcttcata ataataaagc
     4621 tgaataatta actgatcgcg ctctttaaga tcatctagca cttcgtgaat tttttctaaa
     4681 agttcttctt tttcaatttt ttctaaagta ttgtcttcat tataaagttc gatttgctca
     4741 tcaatgggca gggtatagct aatagcatga gctgttctta cttctttgat tttttctaca
     4801 tctaaatcaa gttttttggc tagatactca tcatcaggtt cgcattcatg ttctaaaaaa
     4861 tattcatcca tgattgcatc aatatcttta ataattttac gattatttcg actcattaca
     4921 tcaagacttc taagataatc aagcatagag ccgttaactc tttttcttgc aaaaccccag
     4981 aagttatcat tttgttcttt atcgtaacgg cgtgaaagct ttatcatttc ttcaacgcct
     5041 atgctaataa gatcattaac atctatactt gaaggcaagc gttcttttag tctaaaagcc
     5101 atagcacgca gagctggcat gtaagaaagc acaagctcat cttgctcttt ctttagcatt
     5161 tgtgcataag ctttaggcgg ctcttttagc atttcttcgt ctttctttga attcattttt
     5221 ctttagctct tctctttctt cattgagctt ttctaaaatt atatccattt tcttttcacg
     5281 aataactaaa tcgttgataa tattattgct agttttttca taatcgtgtt tattaaagat
     5341 tctgccacta attttcttta catctataaa attcataata gcaatatgaa caaaaacata
     5401 aaacataaaa gtaataaaac aagtaaaaat cagtatatca aaggcttcat ctatactaat
     5461 aatgctaaat gcaagtccta taaaaaatcc acaaacagtg aaaaatgcta cgtaattttc
     5521 tggcctcata atctcttctc tttattgcta aaatctttca ataatttttc taaaaaaact
     5581 tgaaaaacta cgatttgaaa cattatcaag cactttccgt tccaatctat ataaaagctt
     5641 ggaagctagg gctttaatct catcacttga ggctgtgttt tcatcgctaa ataaagttct
     5701 ttttttaata ctaccactta catctttaga agcgcttaaa tgacctaaga attctaaatt
     5761 taaaggattt ttaatgtttg catctgcaac ttttttaata ttttcaaaaa cttttaaagc
     5821 ttcattttca ttttttacaa cattaaagag cattagtaaa ttttcttttg tcttagaagt
     5881 tgtttttatg gttgcatacg catcagtgat tgctgcagga tcaggaacag ttactactat
     5941 aacttcatca gccatttcta aaaaatttaa aatatttcca ccaatacccg cgcctgtgtc
     6001 gataataaga aaatcaagtt catctaaaat acttgcttga tttaaaaatc tctcgtaaat
     6061 atttttatca ttatatttta aaatctcatc tccactttcg cctgggatga gccataaatt
     6121 tggcttaact tctattaaaa tgtcttccaa ggagcattct ccgcgtaaaa catgcaagag
     6181 atttttttgt atgcgtacat ttaaaatgac atccaaattt gccaagccaa tatcagcatc
     6241 aaaaagccca actttatagc cattatttgc taaaacattg gctagattcg cgctaatcgt
     6301 actttttcca acgccacctt ttccacttgt aatagctata aaatgagtgt tttgggattt
     6361 tttggttcca ttttgactca tgagattgcg aagtttattt gcttggttat tcattatttt
     6421 ttcctttgtt aaacccttct aaaatacaat gaactagaaa atcactattg gctacttcta
     6481 aatcatctgg cacttcttgt cctatagaga aaaagcttag aggaatattt gtttcataaa
     6541 caagagagaa gatatttcca aaaacctttg tttcatcaaa tttagtaata atcaaagtat
     6601 caatatttaa gaatgaaaaa tttttataaa tttccattaa atcttcatgt ttggtgtttg
     6661 cagaaaccac taaatttaca tcaatttctg catttgagtg cattaaaaat tctttagttt
     6721 tagcaagttt gctttgatcg tattgtgaat ttcctatagt atcaactaaa attacttcgc
     6781 aattatttaa gctttttatc gcttcatcta aatcctttgg ttctatgcta tcaataatag
     6841 gaagtttcat catttttgca tactgaaaaa gttgctcaac tgcaccgatt ctataagtat
     6901 caagcgtaat aatacctgtt ttataacgct tatctccata agcatagcga aaagctaact
     6961 tagctaaggt tgttgttttt ccgactcctg ttgggcctac tagcatcatg attttttgtt
     7021 tttttatatc gctttcaaca cgacaaggca agatatttct taaaagtgag tgaaaatatc
     7081 tttgaaccgc atctttgttg gttttcatag cagctggcat attttctata gttgctttca
     7141 taatcgcttc tagatgattt tcaagcattc cactttcttt ggcttgttta taaatacttg
     7201 caaattcagg aggtatcata agattttttc tagcttcagc tttatcgtcc cacatcatat
     7261 ctgcaagaag atctatttta tcattaagct tgttgatttg tttttcaaat tgcttttcaa
     7321 aattttctat ttttttatta taatttggat taggggtgta attttctaaa ggtgtgtttg
     7381 tgactttaga aatttcattg ctaacttcac ttagtttttc tttgaaatca tcaaagccta
     7441 gagtcttatt ttgatgaggg ttgattttgt tttgtggaaa atcttgatag gtttttttag
     7501 ctaagtcatt gttttttaca gtgtttaaat ttgtatttaa gcgagtgttt gagaaatcca
     7561 agactacatc ttcatcttct tgagggattt gagatctaat tttttcttct gcaagagagg
     7621 tagaggatgg ttttggcgag cttttttttg caggtaaaga ttttccttgt ttttttaagt
     7681 gttcttcata gtcgctttct tctatggcta ccataacctc ataaagcgca ctgcgattta
     7741 aggttttagg acgaatttgt ttatttgtta taattaaagc tttatctccg taatcttctt
     7801 ttactttggg tataatttgt tctgtatctt caacggtaaa agtatgtata agttgtccca
     7861 tttatattcc ttatatcatg cctaaaggca aaattacact cactctttct ttagcccctt
     7921 tatgaggcac ctcacaccac ttatcacgct tgactttttg tgaaaagtat aaaagatcta
     7981 aatcaagcgt tctaggagcg tttttgaaag ttctcttgcg tttaaatttt acttcatagt
     8041 aaagtaaaac tttcaaaagt gctcgtgcat gcaaattagt ttgtatcaac ataacagcat
     8101 tggtaaaatc tttttgctct ttaaaaccaa aggcttcatt tatcaacata ggagatgtgg
     8161 ataaaatttt aaatctttta tcatccatca ttactcgaaa aagcatatca aatctttttt
     8221 tttcgggttc tatattgctt cctaagccta taagagctaa atatttaaaa gatcgtatat
     8281 tttgactaaa aaaaggaaaa aaacgacttt tttcaaagtg ttttactcct tgaattttta
     8341 gcattattat ttattcgttt gttgtgcttg ttgcattgcg cgcaaatttt ttatttgttc
     8401 gcaaatttga attataccca ttaaagccaa gtgatagcca aaaggaccaa aaccaacaat
     8461 agttccagaa catacaggcg ctataagact tttttgacga aattcttctc tgcgataaac
     8521 attgctaata tgtacttcaa ttgtaggcaa agctactgct gcaatagcat cgcgaatagc
     8581 tactgaagta tgagtatagc ctgctgcatt gataataatt ccatcaactg ttccaaggca
     8641 ttcttgaatt ttatctacga tttcaccttc aaaattactt tggaaaaagt caagttctac
     8701 attgttttgc gatgctgcaa gtttcatttg ctcatgaatt tcttccattt tcatagcacc
     8761 ataaattccc acttctctta cgccaagcat attaacattt gggccttgga taatcattat
     8821 tttcatggat ttaaccttaa aaatttattt ttaacctttt attataacat tttaaaaata
     8881 aatttttgct acaatgtaat ttttgaaagg aaaatcgtgt ttatagttgc tgcaagatat
     8941 ctttttttat gcgatgaaga ttttacaata ctagaaaatc aagcctttgt ttttgaagat
     9001 aaaattttag aattgggtga attggataat ttaaaaaaaa aatatcctaa ggctaaaatc
     9061 atcaaaacac ctaaaaattc ggttatttta cctgctttta taaatcctca cacacattta
     9121 gaatttagtg caaattcaac aactttacat tttggagaat ttttaatttg gcttaaaagt
     9181 gttataaatt ctcgttccat attaaatgca caggccaaag aagaattaat acttcaaagc
     9241 attaaaaaaa tgcaaaaaag tggtataggc actataggtg aaatttcaag ttttgggagt
     9301 gatttagatc cttgcttaaa ggctagtcac aagggtatgc gtatagtatt ttttaatgaa
     9361 attttgggta caaatgaaaa tcaagttgaa gataaaaaac aagaattttt aaaaagattt
     9421 gaaaattctt tgaaatttaa aaatgatttt tttatcccgg caatttcgat tcattctcct
     9481 tattcaactc atcctagttt ggctcatttt gctcttgatt tagctaaaaa gcaaaattta
     9541 ctagctagta cgcatttttt agaaagtaag gctgaaaata tctggcttag agagtctaaa
     9601 gggggtttta aaaaatggct tgaaaatttc acacttcatc ctaagcctct ttatacacca
     9661 aaggattttg ttaaactttt taaaggagta aggactcttt ttacgcattg tgtttatcta
     9721 aaagaatatg aatggttaga taaaaattta cattctatta cacattgtgc attttcaaat
     9781 cgccttttaa gtcaaaaaag cttagattta aaaacggctt taaaaagtgg attaaatatc
     9841 catttaggaa ccgatggact tagctcaaat atttcattgt ctttacttga tgaaatgcgc
     9901 gcgaatttgc ttatacataa gaattttgat ttattagagt tagcctctaa gcttttgcaa
     9961 atggtaacac tttatcctgc aagggcttta aatttaaatt taggagagct taaaaaaggt
    10021 aaaattgctg attttaacgt atttgagcta ggagaatgtg ataaaaagca agctcctttg
    10081 cagtttattt taaatgctaa ggaagtagat aaattattta taaaaggaaa agaatgcaaa
    10141 ttttaaaatc attttttaag gctttaggat gcggtataaa atttatcaat acttatttta
    10201 aaacctttgt tttattgttg attgttatat ggattttaat acctagtgca aattcaagct
    10261 ctaatcttgc aaatttagaa cgcattgatt taaagggtga aatttttgac agctctgcgg
    10321 ttttggaaaa aattatcaat gctaaaaatg atagcaatat caaaggagtg ctttttgtta
    10381 tagactctcc tggtggagct tttgctccta gcatggaact agctctagct ataaaggatt
    10441 taaaaattaa aaagcctgtg cttgtttatg caagcggaac tatggcaagt ggaagttatt
    10501 tagcaggagt tggagcaaat aaaattttag ccaatccagc aagttttata ggctctatcg
    10561 gtgtgattat gcaaggagct gatttaagcg gattggctaa taaactcggt attaaagaac
    10621 aaactattca agcgggtgaa tttaaaagtg ctggaacttt tgcaagagct tggaatgaga
    10681 atgaaagaaa ttttttacag ggtttaattg atcaaagtta tgatcttttt acaggttttg
    10741 ttgccaagga aagagcatta gatcttaaca aaaaagatca atgggcaaat gcaagagtgt
    10801 ttttagctgc caaggctaag gagcttggtc ttatagatga gcttagtaat tatgaaaatg
    10861 ctaaaaagga gcttgaaaaa cttgctaatg tttcaaatcc tgtttggaaa gaagaagata
    10921 agattgataa atttcttaac cgcctagaag gacaaacatc aagcttgata agtaaaagct
    10981 taatcgaaat cgcttataaa actaatagca gttttataaa cgctagataa aatatataaa
    11041 tatttttatt taatttttgt aatattttta tgcaataatt atttatatct tagataagga
    11101 gtaaaataat gaaaaaaaat attgtttttt tcgaagttaa aggtgggagt gataaaggtg
    11161 aagatggcta tagaaaagat accatgccta tggtaaatgc cttaaaagct aagggttgga
    11221 atgctgaggt gatttttttt gaagtgggta aaaaagatga aatttacaaa tatgtgaaag
    11281 aaaattttga tggttatgtt tctcgcatca atcctggcaa tcttaaagaa gaaaatgagt
    11341 attttgatat gttaagaaaa ctttgtgccg ataagcttgt aggtatgcct catcctgatg
    11401 ctatgatagg ttatggtgct aaagatgcac ttacaaaatt agcagatact gatcttgttc
    11461 caagcgatac ttatgcttac tatgatatta agacttttaa agaaaatttt ccaaaaagtt
    11521 tggctaaagg tgaaagggtt ttaaaacaaa atcgtggctc tacaggagag ggaatttggc
    11581 gtgtgagtgt agagggtaat gttagtggag atagtttgcc tttaaacaca aaaatcaaat
    11641 gtacagaagc taaggataat catgtagaac atagagagct tggggaattt atggattttt
    11701 gcgagcaata tatcataggt gataatggta tgcttgtgga tatgactttt ttaccgcgca
    11761 ttaaagaagg tgaaatcaga cttttaatgc tttataacac ccctgtaaat gtagtgcata
    11821 aaaaaccagc cgaagatgct gatgcttttt ctgctacgct ttttagtggg gcaaaatatc
    11881 gctatgataa gccagaagat tggaaaactt tggtggatat gtttttaggc gagcttccta
    11941 aggtaaggga aaaattaggc aattacgact taccattgat ttggacggct gattttattt
    12001 tagatactga tgaaaagggc aatgataaat atgttttagg cgagattaat tgttcttgtg
    12061 taggttttac ttctcattta gaacttgctg atgaagtagc ttcaaatatt attaatattg
    12121 taagtaaaac taaggcttag tctttaagct taatgtccat tttattattg taaaatggac
    12181 attctttttc tattgttttt aagtttgagc tatattctat cgagaaaaaa ttttcacaaa
    12241 atgagcattt tgtatctttg gttagtatag gataggaata gtcaaattta tccaaaataa
    12301 aatattttat ttttttatcc ttaaatttcc ttctttgtct aacttatact ttatttatta
    12361 ttttaacgca taaatagtta attagaaatt ttctgaatat tttttataaa actgtatggc
    12421 ttctttgcat tttttacatt taaattttac gcccttaagt tgaatttttt gatgaattcc
    12481 aaatggtaca tcatgcattt gttctacgca ttcgcatgta taaagataaa ctgtattttc
    12541 atcatctttt tcttctttga cttcttcaaa gcttacttcc ccatcatctt cagaagttaa
    12601 agaagatctt ctgtattgtt caactttcac atctttatag agtatatgtt ctaaaagcca
    12661 ttttttagaa actgtgtaaa gcttctcttt taaatcatta gtggttttta tgttttgtat
    12721 aagataagac atatcacgaa tgatatttta tgcatgattt tgtgttcatt taaataagga
    12781 taatgaattt cttgcatata atcttcttca ttactaaaat gttctttcat atagttaaaa
    12841 agttctgtta aaatttcttt gagttcttct cgttttacaa atttataaac agcactttca
    12901 accttgcttg caagttcaca aagtttttgg tgttgaatgt caatcattgt gtcatgaata
    12961 ctgtattttt cattccaagt tggaattaat ttatctaaaa gcacct
//
LOCUS       DAPIWV010000047        12872 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.048, whole genome shotgun sequence.
ACCESSION   DAPIWV010000047 DAPIWV010000000
VERSION     DAPIWV010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12872
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.048"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            35..634
                     /locus_tag="RJ272_000958"
     CDS             35..634
                     /locus_tag="RJ272_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7382057.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLATKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKNIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEYPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            645..893
                     /locus_tag="RJ272_000959"
     CDS             645..893
                     /locus_tag="RJ272_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HDV7382058.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(982..1056)
                     /locus_tag="RJ272_000960"
     tRNA            complement(982..1056)
                     /locus_tag="RJ272_000960"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1022..1024),aa:Asn,seq:gtt)
     gene            complement(1149..2396)
                     /locus_tag="RJ272_000961"
     CDS             complement(1149..2396)
                     /locus_tag="RJ272_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7382059.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(2393..3067)
                     /locus_tag="RJ272_000962"
     CDS             complement(2393..3067)
                     /locus_tag="RJ272_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7382060.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(3143..4561)
                     /gene="htrA"
                     /locus_tag="RJ272_000963"
     CDS             complement(3143..4561)
                     /gene="htrA"
                     /locus_tag="RJ272_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HDV7382061.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNNKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            4762..5655
                     /locus_tag="RJ272_000964"
     CDS             4762..5655
                     /locus_tag="RJ272_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HDV7382062.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            5671..6045
                     /gene="hspR"
                     /locus_tag="RJ272_000965"
     CDS             5671..6045
                     /gene="hspR"
                     /locus_tag="RJ272_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HDV7382063.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNNFDLIFYEKK"
     gene            6051..7676
                     /locus_tag="RJ272_000966"
     CDS             6051..7676
                     /locus_tag="RJ272_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7382064.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            7686..8018
                     /locus_tag="RJ272_000967"
     CDS             7686..8018
                     /locus_tag="RJ272_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382065.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            8015..8635
                     /locus_tag="RJ272_000968"
     CDS             8015..8635
                     /locus_tag="RJ272_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7382066.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            8691..10685
                     /locus_tag="RJ272_000969"
     CDS             8691..10685
                     /locus_tag="RJ272_000969"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDV7382067.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWSNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSHNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            10682..11503
                     /locus_tag="RJ272_000970"
     CDS             10682..11503
                     /locus_tag="RJ272_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7382068.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGEFIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            11500..12450
                     /locus_tag="RJ272_000971"
     CDS             11500..12450
                     /locus_tag="RJ272_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDV7382069.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFKVSLKNFFCKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(12447..>12872)
                     /locus_tag="RJ272_000972"
     CDS             complement(12447..>12872)
                     /locus_tag="RJ272_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7382070.1"
                     /translation="KKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSLGAKTVVLNS
                     GVPTTLSALKQNISYEKYEATKVNGKKLYHKDFLNYAIKLFHMEEKKAIKEVGAMRKN
                     YLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
BASE COUNT         4740 a         1953 c         1855 g         4324 t
ORIGIN      
        1 ttcatacaaa taaatttttc cttaaggagt taaaatgctt ccaaaatggg ataacagcta
       61 tagtgtgcac aatgctaaaa ttgatgagca gcataaaaag ctttttaaac ttgctacaaa
      121 agttgaagtt gtatcagata gatctgtaag taaaaatgaa gtcaaagaac ttttggctga
      181 attttttaat tatatgaaag atcactttaa tgatgaagaa aaatacatgc agctaatagg
      241 ctatccaaat ttagaagaac atcgaaaaat acataaagaa atcatccaaa ccatgattaa
      301 tttaatcaaa aatatcaaat caaccaatga tcttaaagaa aaactttata tagtggctaa
      361 aaagtggctt ttagaacaca tactatatga agacatgaaa gttgaaaaat ggagaagttc
      421 ttctttgtct acagatgatg gtggcgatgt tagctttgaa gcagcagaag atgaagataa
      481 tgagtatcca caattttatc tttatacctg taattgtcct ggtaaaattc acgatgttcc
      541 ttatagcatt catcaaaaaa tagaattaca aggtcataaa tttacttgta aaacttgtaa
      601 acaagctata aaattttaca aaaaatattc ttaaggagga taaaatgaaa cgcaatgtaa
      661 aaacttattc ttttagaatg cctttagagc ttaaggagcg tttggataat ttaagtaaaa
      721 atctttctaa accaaaatca accatagtaa aagaagctat agaggcttat cttaatgaag
      781 ttgaagattt ttcttttgct gttaatgccc tagaagaact taaagatggg gattatcaaa
      841 aggcgagtaa aaaaatagat aaaattgtca aaaatcttaa acaaacaaaa taaaaacttt
      901 atcacaattt tttgtgataa agacttatta tttttttata ttaaaataca tttatgaata
      961 ttaaaaatgg agttaaaaaa gtggctccgg atgtaggatt cgaacctacg accaatcggt
     1021 taacagccga ctactctacc gctgagctaa tccggaatat ttaaaagtaa aatgtgatta
     1081 tagtgaaatt aaaaaacttt gtcaaggatt ttttcacaaa aatgcatttt ttatgtaaaa
     1141 aaattaattt actccttaac aataacactt tttaaatttc taaaataaaa caaatttacc
     1201 ccatcttcat ataaataatc aagcttcatt ccatgtgttt ctaaaatagt atttacaata
     1261 taaagcccta atccaaaact tgatttttgt tttgatcctt gagtaaaagc ttgagtatag
     1321 tattctaaag tattgttaag ctcaggacca cgatttttaa aacaaatata atcatctata
     1381 atatcaattt gcacaaaccc atcttcagaa tgtttaatac cattatctat catattttta
     1441 atcgccgtag taaaaagttt aaaatccaca tttacaaaaa aactttcttc cataaaaata
     1501 cgtatattgc tatcatctcg cattgcaatt tctttggctt catctaaaac atctaaaata
     1561 ttgtattttt ttctatttat aaaagcagcc cctgaagtaa tttgctcaat agcagcaaat
     1621 tcattaatta aaatttcaag tctagtaaaa accccattta agcgctcttt atatttatta
     1681 tcttctatca tttctaaagt taagagccct ttagtaatag gagttttgag ttcatgcata
     1741 atatttctta aaaaaaactg acgagattgg tttaactttc gaatttgaac aatggcttga
     1801 taaaaagctt cacttacttg tgaaatttca tccaccccag tgcttacatc ttctatatca
     1861 ccaagctttc cttgggcaaa tttatcaatt tgttttttaa gtcttttaag tggttttaat
     1921 tttttaaata tataaatata aagcaataca agaatacaaa tcacagctac agctatagct
     1981 ttgataataa aatacctata ggtttgataa tcttgatcct tataaagata aacctttcca
     2041 tcataaataa tatttaaata cacctgtcta ttataagaaa taatctcgat taagccattg
     2101 ttaacctcaa ccctagctaa aacatcacct ctaaaaagaa ttttacggat ctgctttgct
     2161 tctgttatct catccatttt attataattt tttgtctgct cttcaaattc tttttcactg
     2221 ataactcctg caaaatttaa gagccttgca ttagctatca aagaatattt tgtgtttaat
     2281 tctctagtat aattttgctg atcgtattct ataagccaca aaaagccaag tataacacta
     2341 accccagcaa aaataaaaat aaaagttata gtataaaaaa tcgaagattt attcattgag
     2401 taagcttata acctattcca cgtatagagt gaatatattt tggagttttt ggatcatctc
     2461 ccatcttttg acgaattcta ctgataataa catctatact tttattacta gaatcctcac
     2521 taatagaaga acaattataa acaagctctt cacgacttac cactccaccc tcttttttaa
     2581 tcaaatagct taaaatatca aattcagcat tagttaaagt aagctcttgt cctttcatgg
     2641 taataatatg cttatattga tcataaacaa gatcttttac actttttgct atggcgcttt
     2701 ttgtatttga aatacgtctt aaatgacttt taatacgtgc ttgtaattct tttggattat
     2761 aaggttttgg taggtaatca tctgctccaa gctctaaagc attaacctta tctgtaatat
     2821 catgtcttgc gcttgaaaca ataataggcg tatcatactt tttacgaatc tcttcacaca
     2881 cttcaagccc atcaagccct ggcaaagaaa ggtctaaaat gataagctga tattctttta
     2941 atgcaagctt agaaagacct atataaggtt catgagctat atcaactttc atatcaaatt
     3001 tttccaaata ttcagctgta atttctgcta attctaaatc atcttctatc ataagaatat
     3061 ttgtcatagt tttcctttat tttaaactta attttaattt taaactaaaa tttataacga
     3121 aaggaaaatc cttccgttat ttttatttaa gcacaagcaa agtcgcaaaa ccattgcgat
     3181 atacccaaac tttggtaaat tcttttttat taacttgttt taaagcttgt tctaaatctt
     3241 ttaaattttt aatttcactt tgtccaacac ctatgataat atcaccctct tggaaaccag
     3301 aattttttcc tttgctcttt tctttaacac tatcaaccaa aacaccatta acatcttttg
     3361 gaatttgcaa acgatcctta agtcttggat ctaaatttct caaactcaaa ccatcaatca
     3421 aatcgctttg tacgccttta ggattttctt tttcaccttt aagaataaaa cttgcttgct
     3481 tattttctcc atctctttcg taacttaatg aaattttttg accaatctct aaagttccta
     3541 tataattttt aagatcaata ggacttttta taaccttatt attaacttta gtaactaaat
     3601 ctccacgctt aagccctgct tcatcagcac ttgaaccttt ttgaacatca gtgattaaag
     3661 ctccttcttg atttttgtaa gcttttttag tatcaccttg caaagctaaa atagtcacac
     3721 ctaaaaatcc tctatcaatc ttgccttttt caataagttt tttagctata tctttaacca
     3781 tatttgaagg tatggcaaaa cctatgccgt tatttccacc accacgagaa agaatagctg
     3841 aattaatacc tactaaatat ccgcgactat ccaccaaagc tccacctgaa tttcctggat
     3901 tgatagaagc atctgtttgt ataaaatttt catattgatt taaacctata ttgtctttat
     3961 ttaaagcaga tattatccca cttgtaacac taaaaccaac tccaaaagga tttccaagtg
     4021 caaaaacaac atctccttcc attaaatcat cagaatttgt aaaagtaata gctgaaagat
     4081 tattagcctc tatttttata acagccaaat ctgtttttgg atctttacct ataagttttg
     4141 ctttatattc tatgtcgctt cctggtaaat tcactgtaat cgtatcagca tcatctacaa
     4201 cgtgattatt tgttactata taaccatctt ttgaaataat cacccctgat cccaaagaac
     4261 tcaccacttc tttatcattt tttccttttc tttgaggaaa atcaaaatca aaaaattgtt
     4321 taaaataagg atcattaaaa aaatcatcca aagggcttgg acgatttgct cttgtaatag
     4381 tttttgaggt ggaaatatta accactgatt tttttgcatc tttaatagaa tcatgataag
     4441 aaagcactgc atttccagca gcaggattca cacgattagc cgttgcagtc gattcgttaa
     4501 aattaatact tgcagcaaat aaagcacttg ctaaacttaa tgataaaaaa atctttttca
     4561 ttttatttcc ttttgttctt aaagataaat tatctcgtaa aatattttac tgtcttcata
     4621 gtataaaacc gaaaatttac aaaattgtaa ataaaacctt gagtgataaa aatttataaa
     4681 acttgattga cttaggctaa agtttatgtt ataatttaat cctctataat aatcaagtaa
     4741 aaatttttaa ggaaatataa catgaatagt ttatacgaaa ctcttggagt tagcaaaaac
     4801 gctagcgcag atgaaataaa aaaagcttac cgtcgcctag ctagaaaata tcatcctgat
     4861 atcaacaaag aaaaaggtgc tgaagaaaaa tttaaagaaa ttaatgctgc ttatgaaatt
     4921 ttaagtgacg aaaaaaaacg agctcagtat gaccaatacg gcgattctat gtttggtgga
     4981 caaagttttc atgatttttc aagaaatact ggtggggtaa atttggacga tattttaaaa
     5041 gatctctttg gaggaggttt tggtggacgc tcaagagggg gttttaacgg cttttcttca
     5101 aaaggcttta gcagtggttt tggaggattt ggaggttttg aagaagaaat tttagacagc
     5161 aatctagagc ttcacattcc tttcgaaaaa gctgttaaag gcggggaaca tagttttaat
     5221 tttcaaggcg aaaccattaa atttaaaatt ccacatggta taaaagaagg cgagaaacta
     5281 agaattcgct ctaaaggaaa acaaagcaga aatggagcta gaggagattt aatcattatt
     5341 gtaaaaatag aagaaagtcc tatttacaca agagaagatg atgatttata tcaaaaggtt
     5401 gatatttctt taaaaactgc actttttggt ggaaaaataa atataaaaac actcaaagaa
     5461 ggcaaggaag aagcaacaat taacataacg cctaattcaa aaaataacca aaaaattcgt
     5521 ttaaaaggct atggtgtgca aaatagaaaa agtgatattt atggggatat gtatttgatt
     5581 ttaaatgttg ttttgccaaa tttagatacc cttgatgaaa aatttataga actcttaaaa
     5641 gaaaaattac cttaaagaaa ggaataaaat atggaacagc attatgatga acctgtatat
     5701 ttaatcagtg ttgtggctaa agttttaagc atacatccac aaaccttaag gcaatacgaa
     5761 agagaaggat tgatagagcc aagtagaacc gatggcaaaa taagacttta ttctcaaaga
     5821 gatattgacc gtattaaact tatattgcgt ttaacaagag acatgggaat caatcttgct
     5881 ggagtagatg ttatcttaaa attgaaaaac caacttcacg aatttgaaaa tttaattgat
     5941 gaactacgct tagaattaag caaacaacaa gataaagaag cggctagtaa agccgttgtt
     6001 aagcataaaa ataactttga tttgattttt tatgagaaaa aataaaaata atggataatt
     6061 ttttagaaat ttttttaatc accgttgcta tagctatagt tttaaatgtc atatttaaaa
     6121 aatttgaaat tccaactatc attggatata tagctgctgg agaaatcatt tctgaaattt
     6181 atcatttaag tggcaaaggc gaaatcactc atatagccga atttggtata gtgtttttaa
     6241 tgtttaccat agggcttgaa ttttctttta agcatttaat ggcaatgaaa caagaagttt
     6301 ttttaaacgg ctctttacag atgcttactt gtggctttgt ttttatgcta cttgctatag
     6361 gaattttagg acttggagat aaaagcgcta ccatagtagg ctttgcacta gcgctttctt
     6421 caaccgcagt ggtgcttaaa attttaaatg ataatggcga tataaatgag caatatggca
     6481 gaaaagcatt gggaattttg ctttttcaag atatagccgt tattcctttg cttttgcttg
     6541 tagatatttt ttcatccaac aatcaaaaca tagaaaaact cctttttacc agtttaattt
     6601 cagcacttat tttaatcact ttattatttt tcataggtaa atatctagtg gatagaattt
     6661 ttagactcat tatccacact tcttctcagg aaatttttat tagtactgtt ttatttatgg
     6721 ttattggagc aagtttttta gcaaattatt ttggattttc ttattctttg ggtgctttta
     6781 tagcaggtgc tttgatagca gaaacaaaat ataaacacaa aatagaagcg gacttaatcc
     6841 catttagaga tttgctttta gggctttttt tcataactgt aggcatgcaa attcaacttg
     6901 atgtagtggc acaaaattgg tttttaatca tagttttaac ccttcttgta atggctttaa
     6961 aatttggcat agtttttggc tttttatttc tttacaccaa aaaaagagta gcgcttaaaa
     7021 cagcttttgc catagctcaa attggcgaat tcgccctagc aattttttct cttttacaag
     7081 caaaaaatat gcttgatatc aaaacttcac aaattttaat tgttgtttct attttaacca
     7141 tgattatcac gccttttatt ttaaacaata taagaaaaat taccaatgtt gtagaagata
     7201 tagcacttaa taccaacgct gtgcaaaata ttgacagcaa tatcaagctg aaaaatcatc
     7261 ttgttgtttt tggctatgga cgcttaggac aagaagtcgt acaaaaaatc aaaaacacag
     7321 gcgtacctta tcttgtttta gaaagtgatt taaatttagt agaacttgga gttagtcgag
     7381 gtgaaaatgt cgtttttgcc aatgctgctc aagaagaaac cttaaaaatt gccaatatag
     7441 aagaatgtgc cgtagctatt atcacagtta caaatgaagc taaacttgaa attttatgtc
     7501 aagtgctagc taattatcca aaacctatag acaccatcat tcatgtaaat ggaactttaa
     7561 aaaagatgct tttttctagc atagatgaaa atatacgcat cattcgctct gaaaaagtaa
     7621 tcgctagaaa tttagttcaa gaagcgctag aatgccgcat tcacaaaaat acctaaggaa
     7681 gaattttgac aaaaaatgaa gaaaaagcct tacgcgtaaa atacctaaga aatcttgaaa
     7741 aatttttcaa tggcgctata tctgcactta aaaaagaaga ttttgataaa actaaatttg
     7801 aagaaagaat gttaaaaaat gctaaatttt ttgaaaaaaa tcccgcggta aatcttaact
     7861 caacctatgc aaaaaatctt gaattttttg tcaatgcttg tttagatttt tccaaagaaa
     7921 aaaacgagct tttaaatctt gccaatgctt tagataagca aaaaaaacaa ggtgagaaaa
     7981 aagaaaaaca taaaaattat ttaaaggatt atgaatgatt aatgtatttt ttgatatgga
     8041 tggaacttta atcgatagtg caaatgccat ttcttgtgca gtcaatgaaa taagacagga
     8101 tttaaaccta gccccacttt caagagaaat cattatgcaa accatcaata ctcccaatat
     8161 tgactgggca aaagaacttt acaatataga aaatttccat cattctagtt ttaaagaagg
     8221 ctatgaaaaa tattttgtca agcactatga acaaagcgtg gtgctttttg aaggagtaaa
     8281 agaactttta gaatttttaa aaagcaaaaa ttgtttttta gctattgcta ctaacgcccc
     8341 gcaaagctca ctttcaaaca tacttaaaaa acacgatatc attccttatt ttgataaaat
     8401 tttaggcgta agtttaggca tagaacccaa acctcatcct atgatgctag agcttttaaa
     8461 aagcgaggct ccatataaaa caagcgtttt tataggagat agtcaaaaag ataaagaatg
     8521 tgctaaaaat gctaatttgc cttattttca tgccaaatgg tatcaaaaaa atttaaaaga
     8581 aaatgaattt agcaacgcta gtgaacttaa aggctttttg caaaagtatt tataagtttt
     8641 ttaatgaaat tttagttaaa attagaaata aattttaaaa agagtaaatt atgagtgaat
     8701 tattaataga aattggtaca gaagaattac ctgctattcc tttgctaaaa gaattagcta
     8761 atatagaaaa aaaatggagc aatgttttag aagaataccg cttggtaagt gattttaaat
     8821 tttattatac tccgcgtcgt ttagtttttt ttcatgaaaa ttttgcagac aaacaagaag
     8881 atagctttgc tgaatttata ggagcaccta aaaatgttgc ttataaagat ggagttttaa
     8941 ctcctgcggg acaaagcttc ctgcaaaaag caaggatcag tgaaaatgaa ctctctttta
     9001 aagaaatcaa aggcaaggaa gttttgtacc atcaaaaagc tattaaaggt ttgcaaagtc
     9061 aagaaatttt aggagaaatg gtagaaaaat ttctaaaaag tcttagtttt ggcaaaagta
     9121 tgcgctgggg tgcaaattct tttgaattca tccgtgcgat ccgttctata gcttgcattt
     9181 taaatgatga acttgttaat tttcaaagct atggagtaaa aagtactaaa aaaactttca
     9241 ttcacagaag cgtaagttat gatttgcaag attttaacaa tgcaaaagaa tattttgaac
     9301 tactagaaaa aaactatatc atccttgatc caatcaaaag aaaggaaaaa atacttgagc
     9361 aatttaaact catagaaagt caaaaaaata tacaaattgg agaagatgaa gagcttttag
     9421 ctgaagtagt tgctatcaca gaatatccta atgcactttt aggaagtttt gaagaagaat
     9481 ttttagaaat tcctagcgaa gtaatcatca cttcaatgag agaaaatcaa cgttattttg
     9541 cagtttttaa cgataaaggc ttaagtaatc attttatagt agtaagtaat gcagtatgta
     9601 aggattattc aaaaatcata catggaaatg aaagagtttt gcgtgcaaga cttagcgatg
     9661 caatgttttt ttatcaaaat gatttacaaa atggcttaaa acctgaaaaa cttgccaaaa
     9721 tgacctatct tgaaggttta ggcacaatgc aagataaaag tttaagagag attaaaattg
     9781 ctgaaatttt atgtcaaatg ctccataatg ataaaatcga aaatatcagc acagcactaa
     9841 aatacgccaa agcagactta gccacacaaa tggtttatga atttactgat ttgcaaggca
     9901 ttatgggaag ttattatgcg caaaaaatgg gcttagatta tcaaatttgc ttagccatca
     9961 aagaacaata tcttcctaat tccgaacaag ctccacttcc aagtacagaa ttttcaagca
    10021 tagtagccct tgcaaacaag cttgataccc ttataggact ttttagcata ggaaaaattc
    10081 caagcggaac aaaggatcct tatgccttaa gaagagctgc caatgggatc attaaaattg
    10141 ctttaaattt aaataaagaa tttgatatcc aaattttatt agaaaaactt tcaaatcatt
    10201 ataaaagctt tgatatgcaa attttaaaag attttatttt tgaaagactt tatacttttt
    10261 atacagtcaa tgcttctttt gtaaaagcgg ttttaagctc acacaataca gatcttatcc
    10321 atatcaatca aagcgtaaat gctcttataa aacttagcaa aaaagataat tttaatgaaa
    10381 attttgcaac ctttaaaaga ctagccaata tcgccactaa aaatcctcat aaagttgatg
    10441 aaagtctttt tgttcaagaa gcagaaagta aactttacaa agcttttcaa gaaaaaacta
    10501 aagccaactc tttacaagaa aaacttgaaa atctttttgc acttaagcct tttattgatg
    10561 agttttttaa tcaagtgatg attaatgctg aagatgaaaa acttaaaaat aatcgccaag
    10621 ctttggttta tgaaatttat gcggagtttt taaaaatcgc cgatcttaaa gagttaagcc
    10681 tatgaaagcc ttatggcttt ttttaagcct tactctttgg ctttttggag ctcaaaattt
    10741 agaactcatc aaaggtcaag ctttattttt ggagctagat aagaaagatt ttttatcttt
    10801 aaaaaataat ggtaaaaata ttcccacttt tacacatcct aaaaatcaag aaaaagttct
    10861 agctattttt tccttacctt acaaaaatcc cccgcaaaat acaaaactta tcgcatttta
    10921 taaagataaa aaagaagaaa ttttcataaa aactttagaa ggtaattata aaagtgaaaa
    10981 attgcaagtt gaaaacaaaa agatttttcc accaaaaacc atacaagaac gcatcactaa
    11041 agaattaaaa gaagccaatg cgatttatag ttcttatact ccaaaagctt tatttaacgg
    11101 tgcttttaat atacctttaa attcttttat cacaagtgat tttggcaaag caagaacttt
    11161 taatgaaaaa gtagcaagtt atcatagcgg aacggacttt agagctgcca caggaacacc
    11221 tatttatgca gccaactcag gcatagtaaa aattgcaaaa gatcgttatt tcgcaggaaa
    11281 ttcagtagtc attgatcatg gttttggaat ttattcacaa tattatcatc tttctaaaat
    11341 cgatgttaaa ataggacaaa agataaaaaa aggtgaattt ataggactta gcggggctac
    11401 aggtagggta agtgggccgc atttgcattt tggaatttta gctggaggca aacaagttga
    11461 tcctttggat tttgtatcca aatttaatgc tatttttcaa tgaaatttag tgactttttc
    11521 catgcttggc tccatgaaag ctattataaa aatgctgtaa gtataggaaa aaacggagat
    11581 ttttttactg ctgtaagcgt aggaaatctt tttggcacac ttttagccaa gcatttttta
    11641 aatttaatag ataaaaaaat tttacaactc cctttagaac ttgtagaaat aggcgctaat
    11701 gaaggatatt taagtcgtga ttttttagcc gctttgcttg aattaagacc tgaaattttt
    11761 tctcaaattt cttttttcgt catagaaccg catgaaaaat taagaacttt acaaaaaaag
    11821 actttagaag gagtggaatt tactcacaaa aatagtctta aagaatgcca ttttaagaac
    11881 gcttttttct tttgcaatga actttttgat agttttgctt gcgaacttat agatcatgat
    11941 aaaatggcat ttgtagaaaa ttttaaactt atttttaaaa atatggatga aaatttaatc
    12001 acaaaatgca aagctttaaa tcttaaaaaa ggtgaactca gtttagagct tgaaaatttt
    12061 tttaaagatt taaaccaaac ttgtgagaga tttatatttg cgggatttga ctatggaact
    12121 ttaaatccac aaagttttag cttaagaatc tatcaaaagc acgaagtttt tagccctttt
    12181 aaagtatctt taaaaaattt tttctgcaaa agcgatctaa cttataatgt caattttact
    12241 catcttcaaa aactcatcaa agaatatgat tttaaacctt tagcttttaa aaaacaaagt
    12301 cttgctttaa tggattttgg ttttgaagat ttattagaat acacaaaaaa taaaaacatt
    12361 aaaacttacg aaagtttttt atctcaagct aaaattttat tttttaattt tgatgaaaaa
    12421 tttcattttt tcgaatttca aaaaaactaa aattttatat ttttcatact cgctaaacaa
    12481 accccctccc ttaaaccctc atcaatgact agaagtttat gtttatcaaa caaagcataa
    12541 aacagcaaac aacctgcact caaataattt tttctcatcg cgcctacttc ttttatagcc
    12601 tttttttctt ccatatgaaa aagtttaata gcataattta aaaaatcctt atggtaaagt
    12661 tttttaccat ttactttagt tgcttcatac ttttcatagc ttatattttg ttttaatgcg
    12721 ctaagtgtgg taggaactcc ggaatttaaa accaccgttt tagcccctaa agaacgaagt
    12781 tcctttttaa tcatagccac ctcatcaaaa gccctaaaag ctagatgctt taaataggga
    12841 tttgcaatta aaaaatgaat tttaagtttt tt
//
LOCUS       DAPIWV010000048        12780 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.049, whole genome shotgun sequence.
ACCESSION   DAPIWV010000048 DAPIWV010000000
VERSION     DAPIWV010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12780
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.049"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            120..905
                     /locus_tag="RJ272_000973"
     CDS             120..905
                     /locus_tag="RJ272_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7382071.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            978..3803
                     /gene="uvrA"
                     /locus_tag="RJ272_000974"
     CDS             978..3803
                     /gene="uvrA"
                     /locus_tag="RJ272_000974"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDV7382072.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3808..4251
                     /locus_tag="RJ272_000975"
     CDS             3808..4251
                     /locus_tag="RJ272_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7382073.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(4207..5214)
                     /locus_tag="RJ272_000976"
     CDS             complement(4207..5214)
                     /locus_tag="RJ272_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDV7382074.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYAYKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(5211..6572)
                     /locus_tag="RJ272_000977"
     CDS             complement(5211..6572)
                     /locus_tag="RJ272_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HDV7382075.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            6736..9375
                     /gene="polA"
                     /locus_tag="RJ272_000978"
     CDS             6736..9375
                     /gene="polA"
                     /locus_tag="RJ272_000978"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDV7382076.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFEKVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9391..10167
                     /gene="motA"
                     /locus_tag="RJ272_000979"
     CDS             9391..10167
                     /gene="motA"
                     /locus_tag="RJ272_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HDV7382077.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLVEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10170..10913
                     /gene="motB"
                     /locus_tag="RJ272_000980"
     CDS             10170..10913
                     /gene="motB"
                     /locus_tag="RJ272_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HDV7382078.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAS"
     gene            complement(10919..12007)
                     /gene="flhB"
                     /locus_tag="RJ272_000981"
     CDS             complement(10919..12007)
                     /gene="flhB"
                     /locus_tag="RJ272_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HDV7382079.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(12126..12722)
                     /locus_tag="RJ272_000982"
     CDS             complement(12126..12722)
                     /locus_tag="RJ272_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HDV7382080.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
BASE COUNT         4623 a         2108 c         2006 g         4043 t
ORIGIN      
        1 ttacgatgct taaagttacc aaaaaatatt ctattgttat aaaaaactaa gataatactt
       61 agcttaataa gataaaatta ttccgtattt gaaatattta atatttttta ggaaaagcta
      121 tggaaatcac agatttacct tatctaatca taggaatcat ttcaggtatt gcttctggac
      181 tttttggcat tggtggaggt atgattatcg ttccttctat gttcgcactt ggagcaagtg
      241 ctcaccatgc tatcggaatt tcagtattgc aaatgatttt tgcagcagtt tttggctctt
      301 atattaatta taagaaaaaa aatctaaatc ttaaagatgg tattatgata ggttttggag
      361 ggctcatagg ggcaagcttt agcggaatgc ttttaaaagc tttaagtgat gtagctctta
      421 ctagcgtatt tttggcggta agttgtatat tttttatcaa atatgctttt ggaattaaag
      481 aaaacattgt gcaaaatcaa agaagcgttt gggtaaagaa tgtcatttta tttattgctg
      541 gagcttttac tggtattttt gctatttctt tgggaattgg tggcggactt ttaattgctc
      601 cgattttagc ttatttttta ggctatgata gtaaaaaagt tgtttcctta tccttgtttt
      661 ttgttatttt tgcttcagtc tctggtatta tatctttttc aaattctgga gttatagact
      721 ctgaagttat tcataaagga atactagtag gtatagcttc tatggttgga gtttttatag
      781 gaattaaaat catagaaaaa atgcatattt cagctcatag aaaaatttta ctttgcgtat
      841 atgccttgtc aatacttgga accacccact ctttgcttaa taagctaaat tttataaatt
      901 tttaacttgg atttatccaa gttcttttaa tattattatg ctaaaatctt aaatttattt
      961 aatgtttagg aaagactatg aacgatacca taaaaatcat tggcgcaaga gaaaataacc
     1021 taaaaaatat ccaccttgaa attcccaaaa acaaactcat tgtttttaca ggactgagcg
     1081 gaagtggaaa atcaaccctt gcttttggaa ctctttatgc tgaaggacaa cgccgttata
     1141 tagaaagttt aagtgcttac gccagacaat ttttagataa ggtaggcaaa cctgatgtcg
     1201 ataaaatcga aggtttaact ccagccattg ccatagatca aaaaactact tctaaaaatc
     1261 cacgctctac tgtaggaacc atcactgaaa tttatgatta tctaagactt ttatacgcaa
     1321 gagttggcat tcaacattgt catcaatgtg gacaaaaaat ttcatctatg agtgtaagtg
     1381 atatagtcag tgaaatttta aaatttccaa aaggtgcaaa aatcatcatc tacgccccac
     1441 tcatacgaga aaaaaaagga acttatgcag atttgcttga aaatttacgc aacaaaggct
     1501 atgtaagagc tcaaattgat ggagttttgg taagacttga tgaagaaatt gaactagcca
     1561 aaaccaaaaa acacaccatt aaacttgtca tagatagact tgaaattcaa gaagatttac
     1621 tttctcgtct tgcaagcgat atagaaaaag gtttacagga aagctttgga gaaatagaaa
     1681 tagaagtttt aaatcatgag gaaataaacc ttaataaaca ctatcatttt agcgagcatt
     1741 cagcttgttt tgattgtaaa atttcctttg ttccacttga acctttaagc ttttctttta
     1801 attctccaaa aggagcatgt gaagcttgcg atggacttgg aattcgttat actttagata
     1861 tgaaaaaaat catcgatgaa aatttaagtc tcgaaaacgg tgctgttaaa atcatgtatg
     1921 gttttaataa aagttattat tataaattcc taatcgcctt ttgcgaacaa aatgaaattc
     1981 ctatcaaaat accttttatg caattaaacg aagaacaaaa acgtcttgta ttgtatggta
     2041 atgccaaaac tatagaattt ctttggaaaa gaaatcgcct aaaacgcact tttgaaggcg
     2101 tggttaaaat ggcttatgaa atgctaaaag atgaaaaaga tttagccgaa tatatgagtg
     2161 aaaaaatttg taaagactgc ggtgggcatc gtttaaaacc cgaaagttta gccgtgaaag
     2221 tagccaaaaa aagcttgggt gaaattttag atatgagcat agaagatagt acggcctttt
     2281 ttgcagatga gaaaaatttt tcttatttaa gcgagcaaca aaaacttatt tctaaaccta
     2341 tcctaaaaga aatcaacgaa agattgtttt tcttgtatga tgtggggcta ggttatcttt
     2401 ctttagggcg cgatgcaaga acgattagtg ggggtgaagc acaaagaatc cgcatagctt
     2461 cacaaattgg cagtggttta agcggagtga tgtatgtctt agatgagcct agcataggac
     2521 ttcatgaaag agatactgca aaactgatta aaactttaag aaatttacaa caaaagggca
     2581 ataccctaat tgtcgtagag catgataaaa tgaccataga agaagcagat tttattgtag
     2641 atattggtcc aaaagcagga aaatttgggg gtgaggttgt atttagtgga acttataaag
     2701 aacttttaaa aagcaaaagc gaaactgcac tttatatgaa tggtaaaaaa caaatttcac
     2761 aacttcaaaa cagaacacag aaagaatggc ttgagcttaa aaatgtaaat attaacaata
     2821 tccaagattt aagcgtaaaa tttcctttgc aaaatttagt cgctataaca ggagtttcag
     2881 gttctggaaa aagctctttg atacttcaaa ccctacttcc ttttgcacaa gaggaattaa
     2941 accgtgcgaa aaaagttaaa aaacttggcg gagtacaaat agaaggactt gaaaaacttg
     3001 ataaagtcat ttatcttgat caaagcccaa ttgggcgcac accacgttca aatcctgcca
     3061 cctatacagg tgctatggat gaaatcagaa atctttttgc cgccactaaa gaagccaaaa
     3121 tgcgtggtta taaagctgga cgcttttctt ttaatgtcaa gggtggaaga tgtgagaaat
     3181 gtagcggaga tggagaaatc aaaatagaaa tgcatttttt acctgatgtt atggtagttt
     3241 gtgatacttg cgagggcaaa cgctacaatg atgccacgct agaaatcaaa tataaaggca
     3301 aaaatatcag tgaaatttta aatatgagtg ttttagaagc gagtgaattt tttacagccg
     3361 ttcctaaaat caaacaaaaa ttagatactc tagtaaaagt gggtttagat tatctaactc
     3421 taggacaaaa tgccaccacc ttaagtggag gtgaagcaca aagaatcaaa cttgctaaag
     3481 aactaagccg tagcgataca ggaaaaacgc tttatatact tgatgaacct acaacaggac
     3541 tgcattttga agatgtcaat aaactcatct tagttttaca acatttagtt gatcttaaaa
     3601 attctgtttt tgtgatagaa cataatttag atgtgattaa aaatgctgat tatatcatcg
     3661 atatggggcc tgaaggcgga gttaaaggtg gaaaagttat aagcacagga agcgtggaaa
     3721 aagtcgctaa agaacacaaa aaaacccgtt cttacacagg atattatcta gacttagagc
     3781 ttaaaaatac acaaaaatca taattttatg tttgattttt tatataatga tattagctat
     3841 ttggggcttt tcatggtgtg ttttctttca agcacactat tacccttagc aagtgaagcc
     3901 tttgttttag gctttataaa acttgatttt aatccgaatt tggtacttat cgtagccact
     3961 ttgggtaata ccttaggaag tttaagtact tatgctttag cgtattttgg aaaagaaaaa
     4021 attttagaaa aatactttag caaatcctta aaaaaattag aaaatttcaa tgctaatttt
     4081 gctaaatttg gaagtatatt tgcttttttt acttttttac ctttagtagg agatcttttt
     4141 gccttgggac ttggttttgc gaaatattct tttttaaaaa ctatattttt tatcttactt
     4201 ggaaaattaa gtcgttatgc tttcataatt ttcatagcaa actcctttta aaaacctctc
     4261 ttttataagt tttaaaagct ttgcattgtc tacatttttt agaattttaa cacaattttt
     4321 agtgcttaaa tccaccccca tactcatttt tggttcttta aaacaacgcc aactcatacc
     4381 tcttgccaaa gaactatcgc aaataacatc agcataacac tcatcaaaat ctgcaatact
     4441 agaatctaat gcgtaagcta tcgttaaagc atcatgtatc caagttccct ttgtaccacg
     4501 tgttttatag gcataatcaa tccaaacacc taaagtttca acaataaaat cacataaaat
     4561 attcttacct tgcaactctt ttaaatcctc gtgtgttaat aaagtctgca tggttgcatt
     4621 ataaggtatg agtgtaattt tagctcttga atttagcact atactagccg cctcaggatc
     4681 aaaaccaaaa tttgtatctt tagtgtaata aggcatatca aaactgccgc ccataataaa
     4741 aagctcttta agatttatat caaaatcttt aaaaattttc atagtcatag cgatatttgt
     4801 caaaggtcct atcgcacaaa tagaaatttc tttaggattt ttactcacca actcacccat
     4861 tttaaaaatc gcatcaggat ttatattttc taaaatttca ggacttttta tattttccca
     4921 aagatattca agtttaaaat ttttaacact ttcatcaagt ctttgacgcc aagctttact
     4981 tggttctttt agggcttcat tcgctcccaa ataaactggg atatttaaat ttaaacgttt
     5041 aaataaatcc ttagccacac tataggcaac aaggcttgga acattaccgc aaactgtgct
     5101 tagcatttca agtttgattt ctttagatga caaaatcaaa gcaagtgcta aaccatcatc
     5161 agtatttgct cctgcaatag cattgcctat gtccgtgtct aagataagtc tcatatcgca
     5221 tcttctattt tatttaaatc tctacctcta gtttctggcg caaaaaatgt agtcacaaaa
     5281 cctatacctg cagttaatac aaaatatgtc gcgataggcc accaagtgcc ataatatgca
     5341 agcaaagcag aagccaccat aggcgctgtt cctcctgaaa gaatagaacc tagctcctta
     5401 gcaaaagcca tttttgtata acggtttttt accccaaaaa gctccacacc ccaagccgct
     5461 tgcacaccaa aaatccctaa agatgctaaa gacataccta caataatagt taaaatcaca
     5521 ataatttcat ttttactatc taaaagcata aaagcaggaa aagcataaat cattaaaagc
     5581 aaacaaaaca ttctataagt aatacatctt ccaaatttat cacttaaata acctgccaaa
     5641 ggaataacta aaaaccctac caatgaagct atcatcactg ctgtagtagc tactgatttg
     5701 tctaaaagta aaattttagt cacataacct acaataaaac cttgcgcaag ataagaaggt
     5761 ccattttcgc ctattcttaa gcccaccata gtccaaaaag cacgacttct ttgccaaaaa
     5821 cttctttcat cttttttcat atgcttttcg ttattaagac gcaatttcat catttcattt
     5881 ttttgctttt caaaaacagg ggtttctttg acatgaaaac gaatatatac agcaaaaaga
     5941 gcgattaaaa tacttcccat aaaaggaact ctccagcccc attctttaaa acttgcttca
     6001 tccatttgta ccatcaaaag ccatacaaaa gacgcaagca aagttccact atttgatcct
     6061 aaagcaatca cagaagaaac aagccctctt ctcttgctag gagcatattc tcctagcata
     6121 actgttccac ctgaaagttc agctcctgcg ccaaaaccct gcataaaacg taatgcaacc
     6181 aaacaaatag gcgcccaaac accaatcact gcataacttg ggataaaacc tatcagagta
     6241 gttgaaattc ccattaaagc tattgtagcc atcataacat tttttcttcc gtgtttatca
     6301 cctaaatgac caaaaaacaa agccccaata ggtcttgcaa taaaacctat gccataagtt
     6361 acaaaactaa gcaaaagtgc aattactgga gtttgctcag gaaaaaatac ttctgaaaaa
     6421 attgttgcag ctgctaaacc ataaagtgca aaatctgcat attccatagc agttcccaac
     6481 cagcaagaaa aaactgcctt tttaaaaact tttctacctt caggtgtgtt aaaattctta
     6541 tctgcaattc catcaatttg ctgatttgtc attacatttt ccttacatta ttcatataaa
     6601 atttttactc tactcgatat tatgactaaa aattgaagta ttttcgctta aatatcttta
     6661 aatttcgaga cattttaagc aaaattttga aataatataa ccaaaaaata tattttatca
     6721 aaagaagaaa ttattatgaa aactttaact attattgata cttttggatt ttttttcaga
     6781 ctttactacg cattaaaagg ttttaaaaat tcacaaggac aagctagtgg aatgattagc
     6841 ggttttgcaa attttattta tagcttaaaa aatgaatata aaagtgatta tattgttttt
     6901 gcattagatt ccaaaggaaa aacttttcgt agtgaaattg atccaaacta taaacaaaat
     6961 cgcactccac caccgcctga acttctagaa caaattccaa tttgcataaa gatgatagaa
     7021 aaaatgggtt ttataagcgt ttctcaagaa ggttatgaag ccgatgatat catcgcttct
     7081 tttgtaaaaa cttgtgaaga tagggatatt tttgtacgca ttatcactca agataaagat
     7141 ctttatcaac tcataaaaga tggcaaaaca agcatttaca gtcctatttc taaaaacgac
     7201 tatgatgaag cagcgtgttt agaaaaatac ggagtaaaac ctaatcaaat cagagatttt
     7261 ttagctcttt gtggggatag ttctgataat attccaggcg ttaaaggtat aggtgcaaaa
     7321 ggagctaaaa ccttgcttga tgagtttggt agcatagagg gaatttatga aaatttaacc
     7381 ctagtacgta acgaaagaag tcgtaacttg cttttagagg gtaaggaaaa tgcattttta
     7441 agcaaaaaat tagcttcttt gtatgacaat ttagaagtac aaaatctcat agaaaaagcc
     7501 acttatcctg atgaagaacc tcttttaaaa atacttgaaa ttttagaaca ttacgaactt
     7561 aatactttgc ttaaaaaact gcgtcaaaat cctgataata aagataaaaa tttaggtttt
     7621 aaagccactt tagtacaaga tgaaaacaaa ctttttgaaa ttttaaatac ccttgataaa
     7681 gaaagtatta ttgcttttga taccgaaacc acaggacttg atactaaaga agcaaaaatt
     7741 gttggtttta gtttttgcat gaatgaaaat gaagcctttt acgtgccttt aactcataat
     7801 tatcttggag taggtgagca aatctcattg caaagtgcca aaaaagctat agaagtaatc
     7861 tttaatcatt ttgttatagg gcacaatctc aaatatgatt ttaaaatcat tcaaaacaat
     7921 tttgacttaa atttacctca aaaatacgca gatacaatga ttttggcatg gcttaaaaat
     7981 ccttctttaa gagtaaatat ggatgattta gccttaagac tttttaatta cgaaaccttg
     8041 cattttgaaa gccttgttaa aaaaggagaa aattttgcaa gtgtagaact tgaaaaagct
     8101 tgtaaatacg ctgcagaaga tgcttatatc actttaagat tttatcttta ttttttaaaa
     8161 aatcttgaaa ctcctttatt agaacttgct aaaaactgcg aatttgattt cattaaaatc
     8221 attatgatga tggaagaaaa tggcataaag cttgatacaa atgcacttga aatccttatg
     8281 aaaaaatttg aaaatgaaat caaaaattta agtgaagaaa tttatactct ttgcgaggat
     8341 agatttaatc taaattcacc taaacaaatg ggtgatatac tttttgaaaa actcaaactc
     8401 ccaagcggaa aaaaaggaaa aacaggatat tctaccgatg aaaaagtttt aaatatactt
     8461 ttagataaac atcctgtaat tgctaaaatt ttagattata gagaacttgc caaactttat
     8521 tcaacttatt gcgaaccttt gttaaaacta gcgttaaaag ataaaaattc acgcatttat
     8581 tcaagttttt tacaaactgg aaccgctaca ggacgtcttt catctaagga tccaaatttg
     8641 caaaacatcc ctgcacacgg acaatatgca aaagattata aatcttgctt tgtagctaaa
     8701 gatggattta gttttatctc tcttgattat tctcaaatcg aacttagaat acttgcacat
     8761 tttagcgaag atgaaaaact tttaaatgct tttgccaatg atgaagatat acacgcaaga
     8821 acagcaataa tgatttttgg tgaaagcaat tatgaaacca gaagtgttgc aaaaagtata
     8881 aattttggac ttatttatgg tatgggttat aaaaccttaa gtcaaaattt aaaaatagaa
     8941 gctcatttag ccaaatctta catagaaaaa tattttgaaa attttactag cattaagaaa
     9001 tattttgaaa aagttaaaaa cgaagctaaa caaaatggtt ttatcactac tttaagcggt
     9061 cgcaagcgtt attttgattt tgaaaacgca aaacctatgc aaattgccat gtatgaaaga
     9121 gaaagcatta attcaatctt acaaggctca gcggctgatg taatcaaact tgcaatgcta
     9181 gaaatcaata aagaattaaa tgaagacaaa aagcttattt tacaaattca tgatgaatta
     9241 atttttgaag taaaagacga tttgtgtgaa aattttgtaa aaaaaactag agatattatg
     9301 gaaaatatag taaaattaaa agtaaaatta aaaacaagtt caagtatcgc caaaaattgg
     9361 ggcgatttaa aataatcaag gagataatta atggatcttt caaccatatt aggaatggtg
     9421 cttgcagtta ctagtatttc ggtaggagat atactagagg gaggcaatcc tttgcatgtt
     9481 gtgcatcttt cttcctttct catagttatg ccaacagctg cattttgcgc aatgacttct
     9541 acgcataaaa aaattgtaaa agcagcctac aaagaactca aagttgtttt taaaggttct
     9601 ggagtaaatt tacccgaaag gatagcccag ctagtcgaat ttgctattat tgcaagacga
     9661 gatggtcttt tagcgttaga atcaagaacc agtgagattg aaaatgaatt tttaaaaaat
     9721 gctatgatga tgcttgtaga tggtaaaagc tttgaagaaa ttcatgaaag catggaaata
     9781 caaactgaac aacttgaaga gcattataaa gaatgtgcag aatattggat agtatttgga
     9841 gagacttgtc ctaccatggg gcttgttgga gcggtttttg gacttatttt agctcttaaa
     9901 ttactagaca atcctcaagc aatggcagca ggtatttcag gtgctttcac ggctacagtt
     9961 acgggaattt ttggcgctta tgcacttttt gctccttggg ggaaaaaatt aaaagctaat
    10021 ggaatggatc ttgtaaaaga gcaaattgtc attactgaag ctataaaagg aattgcagaa
    10081 ggtgctaatc ctagagattt agaagctaaa ctttttaact tcttaagtca cgatgatcca
    10141 agaatttcac aatttgacaa aggttaaaaa tggctaaaaa acataaatgc ccagaatgtc
    10201 cagcaggcga aaaatgggct gtaccttatg cggactttct aagtttgctt ttggcacttt
    10261 ttattgctct ttgggcaatt tctaaaacaa atcctgctaa agtagaggct ttaaaaactg
    10321 aatttgttaa aatctttgat tacacctcta ctcaaacagt caaagaagag agtaaaaccc
    10381 aagaaaaata taaaggcgca gcaaaagaag aaagcgatga actcaaatcg ttaaaacaaa
    10441 tgactatgac acagcaagaa actatcaaac gtcttcaagc agctctagat caaagcgata
    10501 atcaggttgc tcttaacctt ccatctaaag ttgaatttga aagaggtagt gctcaaatcg
    10561 tttcagctga tatacaagat tatttaaaac gtatggctga gctaacaaca tatttgccac
    10621 ctcaagcaaa aatagaaatt agaggctata cagacaatag cgactctatt ataagaagtt
    10681 atgaactcgc ctaccaaaga gcggaaaatg tattaaaata ttttatagaa ggtggagcaa
    10741 atttgaaaaa tattagcatt aaaagctacg ggcttaataa tcctatcaat ggaaatccac
    10801 aagctctaga aaataataga gtagaaatat attttaaagt cgatacagca gatacaagca
    10861 ctcaaaaatc agttcttgaa cttatcaata aaataggaac taaagcatct taaaagtttt
    10921 agtttccttt ttttacttga ccagctaaac gactcttatt atttgtatta taaacaaatc
    10981 ctagcacctc agctacagct ttaaacattt ccctaggaat aagatcatta acatcacaag
    11041 ctttataaag ctctcttgct aaaggaggat tttcataaac tacaacatta ttttcatagg
    11101 ctacttgttt tatgcgaaga gcgagaaaat ccactccttt ggcaacaacc ctaggggctt
    11161 gttctttact tgtatcataa cgaatagcta cggcataatg cgttgggttt gtgatcacca
    11221 catccgcacc tgcaacatct tgaaccatac gacgacgcgc agcttccatt tgaagtctac
    11281 gaattctacc tttaacctga ggatctcctt ccatttgttt atactcatct tttatttctt
    11341 gtttgctcat acgcaaacct ttaaaatact gaaaacgcac caaaaaaaca tctaaaacag
    11401 caataattaa aaaagcaact ataacaatag ctgctaaaac aatagctctg tctcttagcc
    11461 aagtaagctg tgcaaccata gtataaagct caactcttgg aagctcttgc ataaatttaa
    11521 gtaaaactat aaaagctata gtaaaaacaa tacccacttt taaaataatt tttatacttt
    11581 caacaatttt tttcaatgaa aaaaggtttt ttaaaccttt tagaggattg atttttccta
    11641 aatttggcat aataggttta gttgtaaaaa taaaaccaaa ttgcataata tttcccaaaa
    11701 ccccagcaat cataatactt aaaacaatag gtgcaagaat aattaaaacc tcaaaaatgc
    11761 ttttaatcat aatggcttga ataatacgca aatcaaattc aacaccaata aaactttgat
    11821 agtatctata taaatttaca attctctcgc ccataaaact catcataaat aaagttatag
    11881 ttactccaat tatcaaagtt acaatagctg ccgcatcttg agactttgga acattacctt
    11941 ctttacgcgc atcttctatc tttttggacg tgggttcttc tgttttttct tgatcttcgc
    12001 ctgccatatt ttagcctaaa taaaaatttt aatatgtgtg taaaattata gtagaaaatt
    12061 tatgaatttc aattaaagaa taaaaatgaa gaaaaagcct cgtaaagagg ctttatacta
    12121 agaaattaaa gtttagcttc gtttttgcca agatattcag ccacgccttt agggttagct
    12181 ttcatacctt catcgccctt attccatcct gcaggacaaa cttcaccatg ctcatttgta
    12241 aaaagcatag tatcaaccat tcttaacatt tcatctatat ttctacctag tggtaaatca
    12301 ttaaccacag catggcgaac tgttccatca gcatcaagca agaacgaacc acgaagggca
    12361 actgcttctg cataaagtac atcaaaattt ctagcaatct gcttagttaa gtcagcaaca
    12421 agcggaaatt taacctgacc aataccacct tgatttactg gagtattttt ccaagcaaaa
    12481 tgtgaaaatt cattatctcc tgaaattcca attacttcaa tgccacgatt tttaaattct
    12541 tgatatcttt tgtcaaaagc tataatttct gaaggacaaa caaaagtaaa atcttttgga
    12601 taaaagaata ctaccgctcc ttttggacct atgtttttat aaagattaaa atcttgaaca
    12661 atttcattgt ttcccaatac tgctggagca gtaaaatcta aagctttttt agtaactatc
    12721 atattttctc ctaaataata aattttattg ataacgaaat tatatcgttt aaatctttat
//
LOCUS       DAPIWV010000049        12503 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.050, whole genome shotgun sequence.
ACCESSION   DAPIWV010000049 DAPIWV010000000
VERSION     DAPIWV010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12503
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.050"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            13..573
                     /locus_tag="RJ272_000983"
     CDS             13..573
                     /locus_tag="RJ272_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382081.1"
                     /translation="MIISVVNKKGGVGKTPFAFSIAKDLEYFLQSNDNSIIEKIYPEK
                     AKILPTPKKIDNCVYDFGGFVEKGVLDIIKESNKIIIPCTSNYNSLLRTLETLNEIGN
                     DDRVCILVTDYRDEKEKRQICETLESNFTDLNLFFFKFSKIIENSMSSGASFTELYNE
                     NNLSRLSYTNFFNEYQRLLDFIRKDK"
     gene            576..842
                     /locus_tag="RJ272_000984"
     CDS             576..842
                     /locus_tag="RJ272_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382082.1"
                     /translation="MEKKPFTIAEALNSETSSQKTYSKADKKSAGRKTIDQKLRRDNL
                     VVCRLNEQEMEILKKLMDLDLVSEYGTYIRKLILKEARALNINS"
     gene            889..6687
                     /locus_tag="RJ272_000985"
     CDS             889..6687
                     /locus_tag="RJ272_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDV7382083.1"
                     /translation="MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEH
                     REVTDNIERTSISSNTPSVDRQENSTIQLDNTREMGRVLSEHNQESRNVRSNDTSIAT
                     NTNGISNLGEQRSRQEERTGANRYGDTSRRANKSQSIHSDRTPNLFSFISRNDDERQG
                     TDAARSYNQQSVLETAARNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIK
                     LSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEK
                     AKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDDHTKEIFEPSAGIGSFLSYAKNYSDKY
                     HFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDP
                     TLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNFIAEQATFLGAVRLP
                     NNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDF
                     RINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQET
                     KIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIGSDDELVFSKPVLNEH
                     DTRRIKKLIALRDQFNTLIEYEKNESNDLLVENQRKSLNKLYDEFVAKEGYLNRDANK
                     KAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIK
                     ISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAE
                     KYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKY
                     YKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGYSLSSYIRSEYATERIGCFDLLEHG
                     LLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLEN
                     IYNERFNTNIEPRYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKT
                     LVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNRE
                     KFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKRNDDNVMRY
                     SVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGD
                     ISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILK
                     EKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTN
                     NDIMKYQKDFVPKLYNDKPINIVAPRSKEIAEFIGIQDENGRWNEGSIVWRMEHQQDD
                     ITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLI
                     FCDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKF
                     DVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGT
                     NVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDA
                     RMWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSD
                     LRQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKY
                     YINDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISG
                     ERTDLNTLNFYVSTTDDKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDL
                     EKFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQ
                     KNYKSDFVPKSAKILEDLNKNNNIQKEYDIEI"
     gene            complement(6709..7413)
                     /locus_tag="RJ272_000986"
     CDS             complement(6709..7413)
                     /locus_tag="RJ272_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7382084.1"
                     /translation="MKQEIYTSKFYISKRNGKEVCFKLDFEIKAFEENQKFYYVEIYA
                     IIDYQYLKNEIAVIPNTNKNRNHWILRYDFNSWNFHSSIMLHSDYRSLGIGTFVINKM
                     LEIALNYIPTARLSGKLSAVDEVKLENHIRRDKLYKNLGFVFNENNIGFSINSISNLK
                     IRKDFDYIQEVRIFDMCNQLAELQYLKAGNDKLLKIYKEDFYKEKSKNDTLRARIKLM
                     SFVLIALAVWIVYLLK"
     gene            complement(7439..8827)
                     /locus_tag="RJ272_000987"
     CDS             complement(7439..8827)
                     /locus_tag="RJ272_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7382085.1"
                     /translation="MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNKDKYTKDIK
                     TGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDIYAGEDE
                     ILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMY
                     PNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFANALNELGIEAK
                     ATNKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSY
                     YVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEV
                     IKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQEL
                     GNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGKRGRTDNSLRW
                     TSARNNEITRNG"
     gene            complement(8827..9378)
                     /locus_tag="RJ272_000988"
     CDS             complement(8827..9378)
                     /locus_tag="RJ272_000988"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382086.1"
                     /translation="MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSC
                     DTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLL
                     LNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDN
                     IRDKIDILSDQLGAIIEKNNERI"
     gene            9572..9853
                     /locus_tag="RJ272_000989"
     CDS             9572..9853
                     /locus_tag="RJ272_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382087.1"
                     /translation="MLKESKLIEELKREYDEKLKKLRQKEKENKERIYKKLSSALFKD
                     FEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ"
     gene            9882..10493
                     /locus_tag="RJ272_000990"
     CDS             9882..10493
                     /locus_tag="RJ272_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTPase"
                     /protein_id="HDV7382088.1"
                     /translation="MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFD
                     VAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENIN
                     PEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREK
                     FEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR"
     gene            10497..11150
                     /locus_tag="RJ272_000991"
     CDS             10497..11150
                     /locus_tag="RJ272_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382089.1"
                     /translation="MNNTINFNELFSQIRLSSYDNNIVKHYDNLKCVGKITPKLATLE
                     IILRNKLDNKLSEKDNDWIKNSNDEKIKKSKEEIEHREKNRILSHHQYLSRISLGTII
                     HLIKENKLQNSIMDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNLRN
                     RSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEYC"
     gene            11269..12495
                     /locus_tag="RJ272_000992"
     CDS             11269..12495
                     /locus_tag="RJ272_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HDV7382090.1"
                     /translation="MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFS
                     QWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSG
                     AYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEI
                     LTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKL
                     WSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFA
                     TAATIYKALNKPVIMGVDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGV
                     ETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLK
                     SFKSMEKTQPEKEITR"
BASE COUNT         5009 a         1624 c         1810 g         4060 t
ORIGIN      
        1 aaaggttttt ttatgataat atctgttgta aataaaaaag gtggtgttgg aaaaactcct
       61 tttgcttttt caattgctaa agatctggaa tattttttac aaagcaatga caattctatt
      121 atagaaaaga tttatcctga aaaagcaaaa attttaccga ctccaaaaaa aatagataat
      181 tgcgtttatg attttggtgg ttttgtagaa aaaggggtat tagatattat taaagaaagt
      241 aataagatta ttattccttg cacgagtaat tacaattctt tacttagaac attggaaact
      301 ttaaatgaaa taggtaatga tgatagagtt tgtatcttgg ttacagatta tagagatgag
      361 aaagagaaaa ggcaaatttg tgaaactctt gaaagcaatt ttacagattt aaatctcttt
      421 ttctttaaat tttcaaagat aattgaaaat tctatgagta gtggagcttc ttttactgaa
      481 ctttataatg aaaacaatct ttcaagatta agttatacaa attttttcaa tgagtatcaa
      541 agacttttag attttattag aaaggataaa taataatgga aaaaaaaccc tttacaatag
      601 cagaagcttt aaactctgaa acaagctctc aaaaaacata tagtaaagct gataaaaagt
      661 cagctggaag aaaaactata gatcaaaaac taagaagaga caatttagta gtttgcagac
      721 ttaatgaaca agaaatggaa attttgaaaa aattaatgga tttagattta gtaagtgaat
      781 atggtactta tataagaaaa ttaatcttaa aagaggcacg agctttaaat attaatagtt
      841 aaaaatgtta aaatatcctt gcaaaaaaca aaaattacaa ggatacaaat gagtaaaaaa
      901 acaaaaagac aaattgaaga tgaaaaagat tatggcggtc gaagtttatt tgatctaatc
      961 gaattagaat tttcacaagg agaagaaaat gagcaacaaa atagagaatt atccgaacat
     1021 agagaagtta cagacaatat tgaacgaact agcatttcat caaatacacc aagcgtggat
     1081 agacaagaaa attccacaat acagcttgat aatactagag agatgggcag agttttatcc
     1141 gaacacaatc aagaatctag gaatgtcaga tctaatgaca ctagcattgc cacaaacaca
     1201 aatggaatta gcaatcttgg agagcaaaga agcagacaag aagagagaac aggggctaac
     1261 agatatggag atactagcag aagagcaaat aaatctcaat caatacatag cgatagaacc
     1321 ccaaatttat tctcctttat ttcaagaaat gatgatgaaa gacaaggaac agatgctgca
     1381 agaagctaca atcaacaatc agtattggaa actgcagcaa gaaatgatgg atatgaaaga
     1441 agaagcctca aatctgggca aaaattagat tttgtaagcg atgatgaaat ctatctaggt
     1501 tctttaaaag atagatttca aaaaaacctt caagccatta aactttcaaa aactattgaa
     1561 caagaaaatc gctacgctac caaacaagaa caagaaattc taaataaatt ttcaggatgg
     1621 ggcggtattc ctcaagcttt tgatcatcag aataaagaat gggaaaaaga atttaaagaa
     1681 cttattagca cacttgatta tgcagaatat gaaaaggcaa aaacttcaac tttagatgct
     1741 ttttacactc caaaaattat tatcgataca atttatcaag ggcttaatca gctaggattt
     1801 aataatgatg atcacaccaa agaaatattt gagccaagtg caggtatagg ctcttttttg
     1861 tcttatgcaa aaaattatag cgataaatat cattttactt gcgtagagct tgatactata
     1921 agtgcaaata tattaaagca tttgcaccca aatcaaacaa tttataataa agcatttcag
     1981 caccatttat ttgataagcc atacgatgct tttataggta atccgccttt tggtcaaaaa
     2041 aagatcttgg atttaaatga tccgacactt aataaaacga gtgtgcataa ttattttatt
     2101 ggtaatgcaa ttaaaaattt aaaagaagat ggaattgctg cttttgtagt atcaagttat
     2161 tttttagatt ctaaaaatag cacaataaga aattttatag ccgaacaagc aacattttta
     2221 ggtgctgtaa gattgccaaa taatgctttt aaaaaacgag ctaatacaga agttactacc
     2281 gatattatct tttttaaaaa aggtaaagat ttaaatatag ataaatcttg gctagaaagc
     2341 gtagaatact atgacgatcg ttttgatgaa gctgaaaaaa gaggtatgca ccctgatgtt
     2401 tttaatgact ttagaataaa tgagtatttt aaaaataatc cacaaaatat cttaggaaaa
     2461 atgaatatta aaagctctca atatggttat agtttagaat gcttagatga tggaagagat
     2521 ttaaaaatcg ctttagaaaa ttttacaaaa accttaccta aaaacattta taaatatcaa
     2581 gaaacaaaaa tcaagctatc ttattacagg attgatagag aatcgcctga atacgaaaaa
     2641 tatagcaaaa ctctaagtaa gttaaaagat ggaaattatt ttgaatacaa taatgaaatc
     2701 tacatgaaaa tcggaagcga tgatgagtta gtcttttcaa aacctgtttt aaatgaacac
     2761 gatacaagaa gaattaaaaa actcattgct cttagagatc aatttaacac tcttattgaa
     2821 tatgaaaaaa atgaatctaa cgatctttta gtagaaaatc aaagaaaatc tctaaacaag
     2881 ctttatgatg aatttgtagc caaagaagga tatttaaata gagatgcaaa taaaaaagcc
     2941 tttagagaag atgtagaagc aaacaaaatt ttagcactag aaaaaaatta tagcagtggt
     3001 atttcaaaaa gtgtagcttt aaaagaaggt atagatccta ttgcaccaag tgcaacaaaa
     3061 gcagatattt ttttcaaaag aactataaat gcacaaaaag aaattaaaat ctcgactcca
     3121 aaagaagcat taattgctag tatcaatgaa tatgggagaa ttgatttaaa atttttagaa
     3181 acgaatttaa atcagccttt agaagaaacc cttaaatctt tagagcaaga tagattaatc
     3241 tttaaagatc acaaaaatcc tgcaaattat gttttggctg aaaaatatct ttctggcaat
     3301 gttaaagcaa agcataaaga agtaaaaaaa ttagtagaag atggctttaa tgaatttgtt
     3361 aataatttag aaagcttaga acaagtcttg cctaaagatt taaaagcggt tgatatttca
     3421 ataagcttag ggacaacatg gatacctata aaatattaca aacaatttat agaagaaacc
     3481 ttacaaatta ctcctaaaga ttatgattta tttttaatgg aaaaaacagg cgaatggagt
     3541 cttaaaggtt ttggctattc tttaagttct tatattcgtt cagaatatgc cacagaaaga
     3601 ataggttgct ttgatttgtt ggagcatgga ttattaagaa agcctattcg catttatgat
     3661 aaaaaactag atccatcagg aaaagaaatc agagaattaa atcctaaaga aactgcaatc
     3721 gctaattcta aattagaaaa tttaaaaaat gaatttatag aatggattta taaagactat
     3781 gatagacgca cagatttgga aaatatctat aatgaaaggt ttaatacaaa tatagaacca
     3841 cgatacaatg gagagcattt agaacttcca aatttcaatg ccaatatcaa actcaaaaaa
     3901 caccaaaaaa atgctatata tagggctatt caagaaaata gtattatttt tgatcatcaa
     3961 gtaggtgctg gaaaaacttt agtggcaatt tgctctgtga tggagcaaaa aagaatgggg
     4021 cttttaaata aacccttaat tgtagtccct aatcatttag caagacaatg gaatgatgag
     4081 ttttatcacg cctatacaaa tgcaaacatt ttagttgcta caaatgatga tttaaaaaaa
     4141 gataatagag aaaagttttt ttccaaaatt acaacaaata attttgatgc catcattatg
     4201 acacactcgc aatttaaatt aatccccgca ccttatgaag ttatcaaaaa acaatatgaa
     4261 gaagatatta atatcttaga acaaacatta gaaaaaaaac gaaacgatga taatgttatg
     4321 cgatattctg taaaagactt agaaaaacgc attgaaaatt ttaaggtgaa attgagtgat
     4381 ttgcaaacta cacataaaaa atctaaagcg atagattttt cagaattagg aattgatgca
     4441 ttaattattg atgaagcaca tgagtttaaa aatttactca ttacaacttc aatgggtgat
     4501 ataagtggtc ttggcaattt aaaaggctca caaaaagcct atgatcttta ttctaaaaca
     4561 caatatattc acgagcaaaa taaaaaactc tattttttaa caggaacgcc tataagcaat
     4621 tcaattacag agctttatac tttgcaaaga tacatacaac caaatatctt aaaagaaaaa
     4681 gggatacaag cttttgattc ttgggcttct acttttggag aagttacaaa cgcttgggag
     4741 cttgatagtt ctggaataaa ttataaaatc gttgcaagat ttaacaaatt caaaaatgtt
     4801 cctgaacttt ctaccatgta taaaagtgtg gctgatattg taacaaataa tgatattatg
     4861 aaatatcaaa aagatttcgt gccaaagctt tacaatgaca aacctattaa tatcgttgct
     4921 cctagaagta aagaaatagc agaatttata ggcattcaag atgaaaatgg aagatggaat
     4981 gaaggctcta ttgtgtggag aatggagcat caacaagatg atattactag aaataactta
     5041 cttgcttgta ccacagatgc tagaaaagct ggacttgatt ttagacttat taatccacat
     5101 tgtgatgatt atgcaaattc taaaattaat aagcttattg aaaatgtttt taatgagtat
     5161 aatgcttgga atgatgataa aggcacacaa ttaatatttt gtgatttatc cactccaaaa
     5221 caacactcac aaaaagttgc tctaaatggc aatattgcta caccaaattt aaataaagaa
     5281 gaatttgtca atattaatga aacaatagaa caaacagaag aagagaatag caaaagcctt
     5341 gatgaactct tagcagaaca agcaaaattt gatgtatata ctgatatctt aaaaaaactt
     5401 gtcgcaaaag gtattccaca aaatgaaatt cgtttcattc acgatgcaaa aacagactta
     5461 caaaaaggac agctttttgc agatatgaac tcaggaaaag ctagaatttt aattggatca
     5521 acgcaaaaaa tgggtgctgg aacaaatgtg caaaaaagaa ttgtagcctt acaccattta
     5581 gattgccctt ggcgtccgag cgatttagaa caaagaagcg gtagggttat aagacaaggc
     5641 aatgaactct ttatgagaga tccacaaaac tttagagtaa aagaattcag atatgcaact
     5701 gaaagaacct atgatgctag aatgtggcaa gtcattgaaa gcaaagcaag atccatagaa
     5761 caatttagaa aagctggtgc tgatgtaaga accttagaag atgttacaag tggtgcagcc
     5821 gatgctgcag aaatgaaagc agaagcaaca ggcaatccac tcattttact acaggtgcaa
     5881 ttaaatagtg atctaagaca agaagaaatg ctttatagtg gttataaaag acaaatacac
     5941 aataatgaag aaagtcttat aactaatctt tcaaagattg aactactaaa aaaagatata
     6001 gctaaaatgg aaattttaaa ttcaatcatc aaagaaaaca atagcgagca ttttcaagga
     6061 aagtattaca ttaatgatga tgaaaaagat ttcattgtct ttaaaaatga tacgagtgat
     6121 ctaaacaaaa gcagacaagc agaacttgaa agaaattttg aaaagattgt taaaacaata
     6181 gctgatgact atcaaaaaga atataaggtt ttagagttta aaggactgct tataagcgga
     6241 gaaagaacag atttaaacac tcttaatttt tatgtgagta ctactgatga taaaacaata
     6301 attgagcctg aaaatttgat ttataaaaga gatgaaaaaa ccttttttaa attggaaagt
     6361 tatgtaaatt ttggtggttt tgtaaagaga ttaaacaatt tttataatga cttagaaaaa
     6421 tttactcaac tcaataaaaa taagatagaa aatcttgaaa aagaaattgt ggagctaaaa
     6481 agcattacag gggataacac tccaaaatac aaaagaaagg actatttaga ggcattaaga
     6541 gaagacaatc gcattatcat ggatgaaata gaaaaaatga gtaagcaaaa aaactacaaa
     6601 agtgattttg tgccaaaatc tgcaaagatt ttagaagatt taaataaaaa caataatatt
     6661 cagaaagaat atgatattga aatataatta gtaaaaggca attgcctttt actttaataa
     6721 ataaacaatc caaacagcca atgctatcaa aacaaaagac ataagcttaa ttcttgcacg
     6781 aagggtatca ttcttgcttt tttctttata gaaatcttct ttataaattt ttaataactt
     6841 atcattgcct gcttttagat attgtaattc tgctaattga ttacacatat caaaaatacg
     6901 aacttcttga atataatcaa aatcttttct tatttttaaa ttactaatgc tatttatact
     6961 aaaacctata ttattttcat taaatacaaa acctaaattt ttatacaact tatcccttct
     7021 tatatgattt tctaatttta cttcatcaac tgcacttaat ttgccactaa gtcttgctgt
     7081 tggtatataa tttaaagcaa tttctagcat tttatttatc acgaatgttc ctatccctaa
     7141 agatctataa tccgaatgta gcattataga ggaatgaaaa ttccaactat taaaatcata
     7201 tcgcaatatc caatggtttc tatttttatt agtatttgga ataacagcta tttcattttt
     7261 caaatattga tagtctataa ttgcatatat ttcaacataa taaaattttt gattttcttc
     7321 aaatgctttt atttcaaaat ccaatttaaa acaaacctcc tttccatttc ttttagaaat
     7381 ataaaattta ctcgtataaa tttcttgttt cattacattt ttccctttct tttataaatt
     7441 atccatttct tgtaatctcg ttattcctag cacttgtcca tcgcaagcta ttatcggttc
     7501 gtcctcgttt tccttgttgt aactgattga gtgcattgat gtgcaaaagc atttgagttc
     7561 gttttgtgtt atgaaccata ggctgtttgg acaatattcg catagagttt ctttcttggg
     7621 cagtttctct tcggatagtt gatttattac cgagctcttg taagactctc tgtctatatt
     7681 gttttgtata atctctctca ttattcactc ctttatcttg tataatttta tatttttttg
     7741 ttgttttggc tttgttgatc tgttttaaat ctttctctct acctattact gatacttccc
     7801 aaataggttt tttaagtgtt ttaataactt cttgccattt gttattaatt tttgcctttc
     7861 tttttatctc atattcttct tgccctacta ttttaaatct tgcatattca ccccttaaaa
     7921 ctttattttc tctcacaacc ctttctaaat cttgtcccca aattgtagtt attccttttt
     7981 tggttttata actcacataa taactttttt tggcattttt atctgtgcta aattgatagt
     8041 ttgcttctcc gaaatccata acttgataat aatgcatttt tatttttggt gcttgattaa
     8101 tctcattatt tgtatttaat ttaactgaaa attcttgatt tatttctact tctctttgct
     8161 ttttatttgt agcctttgct tcaattccca actcatttaa tgcatttgca aattctgctc
     8221 ttaaatttgc taaatctgct ttttttggat taattctttt gccattttta tccgcaactt
     8281 tcaagcaaac atggcaatgc ggattatcag tatcattatg aaaagcaact acaaaaaaat
     8341 tatttggata cattcttttt aaagtagtaa ttacagcttg ttgtaatttt tcttttggtg
     8401 ttgtagaatg ttctttcatg gaaaaaacca tattaatggt atgtcttttt tctttagcac
     8461 cttccttata taatggaata ggagatcctt catttttgaa aattctttta acttctaaaa
     8521 tctcatcttc tccagcatat atatcaaaat cgtttgtaat taattctaca tttccatcac
     8581 gagaaatata atcaagatgt tttgaaagtg cttgagaatt tttagaacct gaagtaattt
     8641 ttacaacgac ttctgtattt tttctaaaca tatttttact aacaagctta cctgttttta
     8701 tatctttggt gtatttatct ttatttttat tgatgtaatt tagtggtagc tttgaagcat
     8761 tttctatttt agtaaaaact tttttagcaa ttatttcatc atcaaatatt cttatactac
     8821 gcgacattaa attctttcat tatttttttc tattatagcc ccaagctgat cggataatat
     8881 atcaatttta tctctaatat tatccatagt tttatttaaa ttattttcat ttattttgac
     8941 agaatttcca cttctaagaa tcttcaataa ttgatatata tttttaccta ttgcattgat
     9001 ttctgttctt gtttttataa actcatctat ttctatatta gtaaaaagtt tttcattttt
     9061 tatggagttt aatagcaaaa attttgcttg ttttgtaata cttgaaaatc ctgtattttt
     9121 agaaatttct tttaaaatat ttacttcatt ttctgtaagt tttagtttga ttattttatt
     9181 ttcatcactt gtataaaatt tatttttaga tatttcatca ttgattttat tcttctcatc
     9241 tgtatcacaa gaattaaact tttttaataa aatagatatt attttactat atgatgcgtt
     9301 tgtttctgat tttatatact ctaaaattat tttatcatct ttgctaactt ttatgacgca
     9361 attattgttt ttattcattt gcacttcctt agtgagcctc gcagagtttt tgccttttat
     9421 tttttaaaaa ggtaactttt tgagaaataa aaggctatcc tgcaatcatt aaattatttc
     9481 gattaatcgc tattctacat tattaagctt tataaaacat taagactact ttgcgataat
     9541 acatttacat aaatattaca aaggagatgt tatgcttaaa gaaagcaaat tgatagaaga
     9601 attaaagcgt gagtatgatg aaaaattaaa aaaattacgc caaaaagaaa aagaaaataa
     9661 agagcgtata tataaaaaac tttcatcggc actatttaaa gattttgaaa taaatgaaga
     9721 ttttaaaaat gaatttaatt tattggtaga aaagtttgat tgcaaaaaca ctaaaaatat
     9781 cttagataaa ataaataact tatatgattt taatcataga aacgataaaa tagatactgc
     9841 aaaaaaacaa taaaacaaaa atttatcata ggagaataaa aatggaaaaa gattacaaaa
     9901 taaaagtaac agatgtaagt gaacttaatg agcaatataa agaagctata caagaaggaa
     9961 cttatgaagg tgaagatgta aataaatttt ttaatacaat aaaaactttt gatgttgcag
    10021 aaagcttact aaaaaaagat ttttcaaatc aatatattaa atttgatatc attactgata
    10081 aagaaaaaat accattaaat ataagacttg gagataaaaa ttttcaaaaa ggtattgaac
    10141 atttaattaa tattggtagt tccaaattaa ttaaagaaaa tataaaccct gaaataaaaa
    10201 aagatctcaa taatcgactt ggaatttata aaccaaaaat atatgatgaa atgttagatg
    10261 gaacttttaa agcaataaaa aatttatcag aagtagccaa taaagatgtt ggtgtaatga
    10321 tattagaatt tgcaaattct tattctgaaa ctagagaaaa atttgaaaaa aagcaaatta
    10381 ataaaagttc attttttaaa gaaaaaatga atgaattttt caaaaaaaaa ctaaataaaa
    10441 ttttaccaga tagagaaatt agcaacgaaa aaacatattc tcgatcaagg taaaaaatga
    10501 ataatacaat aaattttaat gaactatttt ctcaaataag attatcttct tacgataata
    10561 atattgtcaa gcactatgat aatcttaagt gtgttggaaa aattactcca aaacttgcta
    10621 cattagaaat tattcttaga aataaattag ataataaatt atcagagaaa gataatgatt
    10681 ggataaaaaa ctctaatgat gaaaagatta aaaaatccaa agaagaaatt gagcataggg
    10741 aaaaaaatag aattttatct catcatcaat atctttctcg tataagttta ggaactatca
    10801 ttcatctcat caaagaaaat aaattacaaa actctataat ggatttaaaa aatatcaatt
    10861 ttagaaacta caatcaatac aatagaaatt tcttttttga aaatggcata aaattacgct
    10921 ttagaaatac gcataaagtt gatattgttc ttagcttatt acaaaatcta agaaatagaa
    10981 gttatcattg ggaaaatatt ttaaaaacaa cagaaaaaaa tggcaaacat tacccaagat
    11041 taacaacaaa gattaaaaac acacatatag gagtagatcc gcaaaaaata gattttttct
    11101 taagtgattt aattaaaact tttaacgaaa aaattttgga atattgttaa gattaaaaaa
    11161 tgggacacaa ggagtccctc gaatttaaaa ggtgggctac taggaagccc tttgaatttc
    11221 attgtaatta tactgacaaa acattaaaca aagttaaaag gatatacaat gcctcaaaaa
    11281 agaatttatc tttatgttcc atttaaagac aaagaaaaag caaaatcatt aggggcaatg
    11341 tgggatgata aagaaaaaaa atggtttgct ccaaaaacct tagataaaaa tattttctca
    11401 caatggcttt atccacacca aaaaaaagaa ttttcatttg atgaaaatga agtcttaaca
    11461 gcttttaaat ctgctttaga aaatcaaggt ttaattattg aaggcttacc tatcatggat
    11521 ggtaaaattc atagagtaaa aactactaat gataaaggta gagaattaag cggtgcctat
    11581 agcggttttt tagacgatta tcctgcaggg tttgtgcaaa attttaaaac aggcattaaa
    11641 gaaaattgga aaatgcccat agaaaaaaat caaagcaata atataaaaaa ttctcaaaaa
    11701 ttacatgagc aaataaaaaa agatcaagag cttagagaaa aagagatttt aactttgcaa
    11761 gaaaaaaccg ctttaaaact tgaagatgag tataataatg caaaatgggc taattctaat
    11821 cacgcttatt taaagaaaaa aggctttgat gaaaactttt atcttaaaca ggataaaatg
    11881 ggttctttgc ttattccttt aaaagacgag aatggaaaat tatggtctgt gcaaagaata
    11941 tttccaaatg gagataagat cataggagtc attaaaactc aagaagaaaa agatcaaggc
    12001 gtagaatatc ttgcaaaaaa acaaggttgc tttcatataa taggtgcaaa aagcttggaa
    12061 cattgcaaag aatttattat aacagaaggc tttgctactg ctgcaactat atacaaggca
    12121 cttaataagc ctgtgataat gggtgttgat gctggaaatt tatcgaaaat tgttgaaacc
    12181 ctaaaaaaca aatttcaaaa cactcctatt accttaatag ccgataatga taaaaaaaga
    12241 gaattgaaag gtctttctaa tgtcggagtg gaaactgcaa aagaaattca acaaaaattt
    12301 tcagatatta aagttattat tccaaaaatc agcaatcaag aagcagaaca aggaataagt
    12361 gatttcaatg atattttttt aaataaaggg attgatgaag tcaaaaaaca attaaatttc
    12421 attgattttc ataataagct taaatctttt aaatctatgg aaaaaacaca acctgaaaaa
    12481 gagataacta gataataata gtt
//
LOCUS       DAPIWV010000050        12500 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.051, whole genome shotgun sequence.
ACCESSION   DAPIWV010000050 DAPIWV010000000
VERSION     DAPIWV010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12500
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.051"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1205)
                     /locus_tag="RJ272_000993"
     CDS             complement(<1..1205)
                     /locus_tag="RJ272_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382091.1"
                     /translation="MSETYKIYTPNGIAVKVDKETNKIYFVESLDSHPPAKGNYTEEY
                     SKALFEAHNIKRNSPYKDYKPQYLDPNFYTGQSSTLLEFKEWQNIYLKDPIKGAIAPW
                     TKAEKAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYDAYANVDEKGNLINEEYAYIYD
                     EVSSHRGTLKSYSFFNEWELSALLLGNIKASPTAAVGFKARQQQALFLQAQLGDKNAF
                     KSLGLAVLCSNSFLTGQHWNKLRAKMIYDLHDHHYESLLDEFGMLPFLDEIIGVDWVI
                     DLNRYKFALDEEGRIIWALYDDIEKGKLKDPRDVDSTSESRKEFDHYMDGYVNGMETR
                     FDADIPNDWGDRQATLFKDTLVLSAKLAALTPPQGYPNAPRYYSPERLEIIYKRHKLD
                     KLLDPRIPA"
     gene            complement(1224..5156)
                     /locus_tag="RJ272_000994"
     CDS             complement(1224..5156)
                     /locus_tag="RJ272_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382092.1"
                     /translation="MFISSKTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNID
                     FHQRKMLSKNQILAMQILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEIC
                     TKVYLEDLEEEIQDKKQGKDFNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIE
                     NIDPDDISSEKFDDFKKKVLEKIGNVMESDFFKNSISPTLKNTYEKFINELLEHIKKL
                     AEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRD
                     YGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIINKKEIIDLSGFGLYLGSDESNIAS
                     NLAYKITLSEEIKSIENIFSEIFLNPEQKNKGYKNTPNDSKSSNLPAFISTQKLSNLY
                     LKNNAILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKMSKNYL
                     IISNIPNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMP
                     QDENEPYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKE
                     KLAISENEPIIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEA
                     KESIIEKEKKIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNIN
                     LDLKKYGGSNFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYS
                     FVENDSSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYYLDEQKCIKEFMNLDEETQR
                     AFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFT
                     AQMLWDFNFLKTIEYVIQACIKINKEGFKEFFKEQLGIFAPPKKNSIYHIHIKSNLII
                     KARLQQIEKELIHTKIQMILAQEIKSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWS
                     DKYMKQLFIYSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIF
                     LNYLFPTNFKALQEQYESIVYQLYTFKDDSPLAVIRDHFITYPFAINSKFISFDLKKI
                     FYGIDLCTGVFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQK
                     YIIDDYTFYFKELKSLELKKCTMYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIHAYN
                     EALQILQDFANGIYNTSKDKTGRYIEDKNKTRRLLEKLNVIGQNNLKAMYMGINGNEE
                     SLKAIGKRENNTSKASANADITSETKTPPNFIGRLATTIIIEDGLYMG"
     gene            complement(5201..5947)
                     /locus_tag="RJ272_000995"
     CDS             complement(5201..5947)
                     /locus_tag="RJ272_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382093.1"
                     /translation="MKYRYIKWDENEKCAIFFPDIDFDIWKKTQLLENDYANPTLIIS
                     SHLKDKVGILELFEYYILLICGKSMGVSRWECNNLILLDTYSIDNISSPFYLNTPKPT
                     YISEYINVLGQLFLAGYIDFGSYCDEDRNKIDYPSNLSYYKEDKYQAWIYFRDNFFYQ
                     DKFIRDLDDPETLDEGGYSLILNDVSWDTPQYWSQYNIWIATTPKGTKYFQEILAPKF
                     YNKYKDLEVEIDDKGNVLRWIGEINRDKKY"
     gene            complement(5937..7532)
                     /locus_tag="RJ272_000996"
     CDS             complement(5937..7532)
                     /locus_tag="RJ272_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382094.1"
                     /translation="MLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKK
                     QAIAKLHALLENQNLECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTI
                     AGVSVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPKEGLGEQSKNQIELKEPIIRLHYKSDRFQKDNLPIYNLLINNEKKEQDKALNEFN
                     IDLKDLKDIEDVNIFNQFKQDFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKVYKSAY
                     KEFENKDLGAGYFTQLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLD
                     EILEDEDRKQELYVCKFVVVNGVSENNTQEIIPDNVIRIQTQDGSGEFIEIVFPSQLE
                     LNDKPLEDVSYTFVPALRGIKQFFKDTEYLKPRTLTKDEVLQIVDKLPKNVRDKRRRI
                     VENKEELDKLWKKLTKNSEEFENKVDKKYGQPIYMRKLDDQTIIQYKKTSKSGGETIE
                     INSNKPRGNLKTIHIENGIKNEI"
     gene            complement(7992..8387)
                     /locus_tag="RJ272_000997"
                     /pseudo
     CDS             complement(7992..8387)
                     /locus_tag="RJ272_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(8450..8953)
                     /locus_tag="RJ272_000998"
     CDS             complement(8450..8953)
                     /locus_tag="RJ272_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382095.1"
                     /translation="MGEDIILSIFWGLFGFILAFTNIKFYLTTLSVLVVFSILNYWIK
                     INIKEFVKSYFLISFIIFFMAIVIIFYLSYDLEFYKSLVLLDPPEIEKLSPQEYRVRN
                     YFKFLTFATMFFLVITFIIFPCLLQAYLFKCYSTGEKCKKLSWFIGFVCNVPILISSV
                     YVIYENL"
     gene            complement(8954..10486)
                     /locus_tag="RJ272_000999"
     CDS             complement(8954..10486)
                     /locus_tag="RJ272_000999"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382096.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKCYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEILKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLEQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVLYRVDEMLVYVYDSFDFL
                     DQGHEFDDKGNFIKLGQPVGAWDFNEKSFSIEGSLYQMGTYREWLEWEIDGYKIDCSI
                     SPQRILQSPKTKQYYLYNQDYQDYQKFTPYGLDFKLYSKDFITKLDFKDEAYNVLYNT
                     GV"
     gene            complement(10628..10945)
                     /locus_tag="RJ272_001000"
     CDS             complement(10628..10945)
                     /locus_tag="RJ272_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382097.1"
                     /translation="MIGKDFLYSIHKDKKSIYLFCENKSIIDCQSIYDELYKLEATTD
                     FTFEELQNYQAYIFLNSTLLTGSNELPNNPFYFGELDQDNTIKQDTPSYYFSPSNEFK
                     CKS"
     gene            complement(10953..12302)
                     /locus_tag="RJ272_001001"
     CDS             complement(10953..12302)
                     /locus_tag="RJ272_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HDV7382098.1"
                     /translation="MLNFFDEKTNFDKLNGEFGELQTKNFIQRYEVQFHQPNTTSGFS
                     ATLFYDKEKDEFIVGFRGTETDNFISSIQDIVQDITLSLNGNIQSSFLLEFLEQVNKI
                     IKNKHKRIIFVGHSLGGYLAQMALIYCDIKYKDKLSFSPNEVYTFNAPSVYGWNFPNI
                     AINPNTIKIMQDLLGKYTIDVSEKITHIYDNGKIEIIASAQYGASNALGIYTGKNDHS
                     IKPLVNTLYFYSYLLELDANYNKVKDKSLSECIEYLNHFMKNIQIYTETFVLKNNAIN
                     NKNFALKNGPLGLFRSSPEKINHFEYFLSLIATIMQETNGILEELGDNYYASYKAPTI
                     SQTKIIDFILKAQKKEKYILILDKNDFNKYRKDCSFINNQENLAHKIAIGEFRIFIVV
                     YKDMKCLENINNITKIYGYNSKSYKIKDQIWDEQYLGGVCKISQALYFNGKAKIGII"
BASE COUNT         4053 a         1808 c         1546 g         5093 t
ORIGIN      
        1 atagcaggaa ttcttgggtc aagaagttta tcaagcttat gtcttttata aataatttct
       61 agtctttcag ggctatagta tcttggagca ttaggatagc cttgaggagg agttaaggct
      121 gcgagtttgg cgcttaatac tagagtatct ttgaataaag tggcttgtcg atcaccccaa
      181 tcatttggaa tatcagcatc gaatctagtt tccattccat ttacatatcc atccatataa
      241 tgatcaaatt ctttcctgct ttcagaagta gaatccacat ctcttggatc ttttaattta
      301 cctttttcaa tatcatcata taaagcccaa atgattctac cttcttcatc aagagcaaat
      361 ttatatcgat ttaaatcaat cacccaatct actcctataa tctcatctaa aaaaggaagc
      421 ataccaaatt catctaataa actctcataa tgatgatcgt gtaaatcata aatcattttt
      481 gctctaagct tattccaatg ttgccctgta agaaaagaat tagaacacaa tactgctaaa
      541 cctaaacttt taaaagcatt tttatctcca agttgagctt gtaagaacaa tgcttgttgt
      601 tgtcttgctt taaatcctac agcagctgta ggactagctt taatatttcc caaaagtaaa
      661 gcagataatt cccattcatt aaagaaagaa taagatttta atgttccacg atgagaactt
      721 acttcatcgt aaatataggc gtattcttca ttgattaaat ttcctttttc atctacatta
      781 gcataagcat catagggtat atctataacc acagatctta atccacttct tattgctaaa
      841 tatttatatc tttctctttt agtttttaaa gatttataat aagctttttc tgctttagtc
      901 caaggagcta tagctccttt tataggatct tttaaataaa tgttttgcca ttctttaaat
      961 tcaagtaaag tagaactttg ccctgtataa aagttaggat ctaggtattg gggtttatag
     1021 tctttgtagg gggagtttcg tttaatgttg tgtgcttcaa acaaagcttt ggaatattct
     1081 tcggtatagt tgccctttgc tggtggatgt gaatctaaac tttctacaaa atatattttg
     1141 tttgtttctt tatctacttt tacagctatt ccattaggtg tataaatttt ataagtctca
     1201 ctcattattt atcctttctt aatttatccc atatataaac catcttctat gattatagta
     1261 gtagctaatc tgcctatgaa gttaggtgga gtttttgttt ctgatgtgat atcagcattt
     1321 gcgcttgctt tgctagtgtt attttctctt ttgcctatag ctttcaagct ttcttcattt
     1381 ccatttatcc ccatatacat agccttaaga ttgttttgtc ctataacatt gagtttttct
     1441 agtaatcttc tggttttatt tttatcttct atatatcttc ctgttttatc tttgcttgta
     1501 ttgtaaattc cattagcaaa atcttgtaaa atttgtaaag cttcattgta agcatgaata
     1561 ggactatctt catccttttt aaaagcacta atttgctttt ctttatttct aaactcttta
     1621 aacaaaggat gattacaagg aagttgatac atggtgcatt ttttaagttc taaagatttt
     1681 aactctttaa aataaaaagt ataatcatct ataatatatt tttgttcttt tatatcctct
     1741 aaagcagttg catttctttt ctcatcaata atcaaataag acaaaagtct ttttaaaaga
     1801 aattctttat tttcttcaag cttttgatct atttcataat gaaaggaaaa atgagtgtca
     1861 aaaactcctg tgcaaagatc tatgccataa aaaattttct ttaaatcaaa gctaatgaat
     1921 ttcgaattga ttgcaaaagg ataagttata aaatgatctc ttataactgc taaaggagaa
     1981 tcatctttaa aggtgtaaag ctgataaaca atgctttcat attgttcttg tagggcttta
     2041 aaatttgttg gaaagagata atttaaaaaa atacccacaa attctccagt cacaatagaa
     2101 gcaaggtcaa gtttatttag cttagcataa gtataaatag tatatttttg agtttgtata
     2161 tctatgctat gcataagagc aattttagat atattgcttt cttgattaga gtatataaat
     2221 aattgcttca tatatttatc actccaataa atcttaattt gtttttcatt aaagtattct
     2281 tttatctttg tgataaatag atttaaaccg gatgtatttt tttgtattat taaattggat
     2341 tttatctctt gtgctaaaat catttggatt ttagtatgaa ttaattcttt ttctatttgt
     2401 tgcaagcgtg cttttattat taaattagat tttatgtgta tatgatatat actattcttt
     2461 tttggaggtg caaaaatacc aagctgttct ttaaaaaatt ctttaaatcc ttctttgttt
     2521 attttaatac aagcttgaat aacatattct attgttttta aaaaattaaa atcccacaac
     2581 atttgagctg taaagctgat aaaaggacta gcgcttaata aaatttttaa cattgcataa
     2641 gtaaatattt cacttgtttt ttgttctttt gccttattta aatattcttt tccatacatc
     2701 tgttccaaaa gctttgataa atctgatatt tgtttctcta tatccatcca tgcaacaaaa
     2761 gctcgttgcg tttcttcgtc taaattcata aattctttaa tgcatttttg ttcatctaaa
     2821 taatacattt gctttaattt gattattttt ttatctaatg tatttgttgt atctaaatct
     2881 tttgataatt cattaaaaaa atcatctata gttatcgaac tatcattttc cacaaaagaa
     2941 taatcttttt tgtcaagtat ttttaataat tgcgatacaa cttcatatgc tgtaatattt
     3001 gttggctcat tatttacata tattggacat tcatctgtcc ataaaacata agttttatct
     3061 aagtatttta tatatacaaa attactgcct ccatattttt tcaaatccaa attgatattt
     3121 ggaaaaataa gcttagcttg atacaagaca aatgaaatga ataaacattc cattaaagaa
     3181 tagttcccaa atgaagattt atccgatttt tcaaaaaact cttttttcaa aaaagttaaa
     3241 tattgatgag ctatcttttt ttctttttct atgatggatt ctttggcttc gttttgttta
     3301 aagaattttt tgatataaaa ataaggaagc cattttttat catttatttt tttattgtag
     3361 tcaatataag ctaaaatgtt tattcgttcg caatgtcgta aattttccgt cttttttact
     3421 atttctatta ttggctcatt ttctgatatt gctaattttt ctttagctgt ttttgcgaat
     3481 tctggtagct tctgcggtgt agcaacaaaa tttgttaaat atttataaac cttttgcata
     3541 tcttcataag cttttttact attctcataa gcttctttgg atattttcac aaaagggctt
     3601 aattgtaaaa tataaggttc attttcatct tgtggcattt ctatgctata ttcgctataa
     3661 tctcttgtgc tgtcataagt tttttttgaa gtatcaatat tttttttaat tcttctgtat
     3721 ttatcttgta tattatagtt ggcgatttct tgagttaaac tttcactaag tcctgcattg
     3781 tatttattgg ggatatttga aataatcaaa taatttttac tcattttagt tgtatttaaa
     3841 tctatttgtg cattttgatt tttttgtgcg aaaaattcag ctagtttact tgagttaaaa
     3901 tttggacttt ctatatagga aaaataaata aattgtttaa tatcttcttg caaattcttt
     3961 aaaatagcat tgttttttaa atacaaatta gataattttt gcgttgaaat gaaagcgggt
     4021 aaattgctcg attttgaatc attgggtgta tttttatatc ccttgttttt ttgttctggg
     4081 tttaaaaaga tttcactaaa aatattttca atgcttttta tttcttcgct taaagtgatt
     4141 ttataagcca aattcgaagc gatattgctt tcatcacttc caagatataa tccaaaacca
     4201 cttaaatcaa taatttcttt tttattaata attaaaacac aagataacaa gcgagaatta
     4261 atataatgaa taaacatagc acatctagtg gctaaaaatg cggctaaagg cgttaaaagt
     4321 gtgccataat ctctttgagc aaattcataa tactcgcttg cagaacccat taaagaaaat
     4381 aaaccagcag ctaaaatagc taatcctgcc ccacctgtaa gaacagctac cactgtggct
     4441 attgcaacac ccgctatagc acttagtatg attttaattt tttcatattc tttttcttcg
     4501 gcaagttttt taatgtgttc taacaactca ttgataaatt tttcataagt attttttaaa
     4561 gtgggactta tgctattttt gaaaaaatcc gattccatga catttccaat cttttctaaa
     4621 acttttttct taaaatcatc aaatttctca ctgcttatat catcaggatc aatgttttcg
     4681 attaactcgt ctaaggttgt tatatcttca gaatctttgg ctagttcttt taaagtattg
     4741 ataaattcga tacaaagatt atttttatct gtatgataaa aaagattaaa atctttacct
     4801 tgtttcttgt cttgaatttc ttcttctaag tcttctaaat aaactttagt gcaaatttca
     4861 ctgcttgata aatcttttaa atttacattt tgtccagcat caagctcatt aagggtatgg
     4921 atatttattt ctatattatt gtgattatca caagtttgtt ttaaaatttc tagtatttgc
     4981 atagccaata tttgattttt agatagcatt tttctttgat gaaaatcaat attttttaat
     5041 atagcgtgta aaatagaaaa attaggataa ataaaatcaa tctgtttaac ttctttattg
     5101 ttgattgtta aatttttaat agtttgaatt aactctgttt tagaacttat aaacataaaa
     5161 gattccttat ataaagcatt attatatcat tttttatttg ctaatatttt ttgtctctat
     5221 taatctctcc tatccatcta agcacattac ccttatcatc aatctctact tctaaatctt
     5281 tgtatttgtt gtaaaattta ggagctaaga tttcttggaa gtattttgtg ccttttgggg
     5341 ttgttgctat ccagatattg tattgtgacc aatattgtgg tgtatcccaa gaaacatcat
     5401 ttaaaataag actatatcca ccctcgtcta atgtttcagg atcgtccaaa tctctaataa
     5461 atttgtcttg ataaaagaaa ttatctctaa aatatatcca agcttgatat ttatcttctt
     5521 tataataaga taagtttgag ggataatcta ttttatttct atcttcatca caataagatc
     5581 caaaatctat ataacctgct agaaaaagtt gccccaagac attaatatat tcacttatat
     5641 aggtaggttt gggtgtattt aaataaaatg gactgctaat attatcgatg ctgtaagtat
     5701 ctaataaaat taaattatta cattcccacc ttgagacacc catgcttttt ccacaaataa
     5761 gcaaaatata atattcaaat agttctaaaa taccgacctt atcttttaaa tgagatgata
     5821 taattaaagt tggattagca taatcattct ctaaaagctg ggtttttttc catatatcaa
     5881 aatctatatc aggaaaaaaa atagcacact tttcgttttc atcccatttt atatacctat
     5941 atttcatttt ttatcccatt ttctatatgt attgttttaa gatttcctct tggcttattg
     6001 gaatttatct ctatggtctc acccccgctt ttagaagttt tcttatattg tataatagtt
     6061 tgatcatcta gttttctcat ataaatcggc tgtccgtatt ttttatctac tttattttca
     6121 aactcttcag aatttttagt taactttttc cataatttgt ctaattcctc tttattttca
     6181 actattctcc tgcgtttatc tcgaacattt tttggcagtt tatctactat ctgcaacact
     6241 tcatctttag tcaatgttct gggttttaaa tactcagtat ctttaaaaaa ttgctttatc
     6301 cctcttaaag ccggaacaaa tgtataactc acatcttcca aaggtttatc attgagttct
     6361 aattgactag gaaatactat ctcaataaac tccccactgc catcttgtgt ttgtattctt
     6421 ataacattat cagggataat ttcttgagta ttgttttcac taaccccatt taccaccaca
     6481 aatttacaaa cataaagctc ttgttttcta tcttcatctt ctaagatttc atctagtcct
     6541 tgtgcgattt gaagttttaa attttgcatt tttgcaggag ctaaaaaact aaaatgatat
     6601 tcgtttaatt ctttattatc ttctaaagca tttttgatga ttttatcata ctcatgtagc
     6661 tgtgtaaaat accctgctcc taaatcttta ttttcaaatt ccttataagc acttttataa
     6721 actttagcaa tgttttttgg gataataaaa taaagtttga ttaaattagt atcaaagcta
     6781 agatttaatt ctttaaattc ataatcttta ctaaagtctt gtttgaattg attaaaaata
     6841 ttaacatcct ctatatcttt taaatctttt aaatctatat taaattcatt taaagcctta
     6901 tcttgttctt ttttttcatt attgattaaa agattataga taggtaaatt atctttttga
     6961 aatctatcac ttttataatg aagtcttatt ataggttctt ttaactctat ttgattttta
     7021 ctttgttctc ctaagccctc tttaggatca aagctgtgat caaatttaaa cttagtagga
     7081 gtaaagctta cttttaaagc aaagccttta tctgttttac aagctgagat gagttcttgt
     7141 aagattacat attcattatt gactttcttt tgagataagg atccttttac attaacaact
     7201 ttagtacaag gaacacttac acctgctata gtattaggac aagctactat actagagttt
     7261 aataaatcac tttctagcat tataggcaca ccatcatctt taaaagtttt tcctttgttt
     7321 gatttaagta tgactttacc tccatggata cattctaggt tttgattttc taaaagagca
     7381 tgaagtttag ctatagcttg ttttttatct acttgtgtgg ttttttgttc ttttaaagtg
     7441 tttgaaatta agtctttata ctctaagctt tgtttgctta aacattctaa tttgatattt
     7501 aaagaatttt ctaatataga ataattaagc aaacaaagtt catcattttt ataaaagata
     7561 ctaagtcttc ctaaaccact gctttcatct ttaggagaaa aataataact aggtgtatct
     7621 tgttttatag tgttatcttg atctaattct ccaaagtaaa aaggattatt aggaagttca
     7681 tttgagcctg taaggagggt ggagtttagg aagattttta tatctaaact tttaaaatct
     7741 atttgatatt tttcttctat gtcctttata tccaaaacac ttctatcttt tgcaaaaata
     7801 tcacaatgat tatcataaat atggatcaaa tttgacatag agatgaaaga agtattgtta
     7861 gaattatctt gcaaatcttg taaatttact ttatctaaga atatgatttt tatattattt
     7921 gtctttaata ctatggtatt ggtattttta tcataaaatt gctctatgtt aaatacttcg
     7981 tttaaaatta aattaacatc attttcctta gtattaaagc tttgattatt tagattatct
     8041 tgtaaggaaa tttctttatt taaatagtct tggatatctt ttattttttc atttcttttt
     8101 tcttttaaag tattgataga tttataaagc ctttttctag catcaagata ggtatcattg
     8161 agcttttctt tatctaggat gaagatcttt gtgaaagtag aattatagcc tagattgttt
     8221 atagcggtag cttgggtgaa aagctcttct tgattataat ttatagctat ggaattttca
     8281 cattgatata aggcttttaa gtatgctatg gatgaatttt tatctattgt gtctatttca
     8341 tcattgttta taaaagcaag ccttgttata aataattctc tatccatttt tttctaaata
     8401 tttaagataa atgaatatta tatcaaatat attaaatttt tgatagtctt taaagatttt
     8461 catatatcac ataaacactt gagatcaata taggaacatt acacacaaac cctataaacc
     8521 aacttaattt tttgcatttt tctcctgtgc tataacattt aaataaataa gcttgtaata
     8581 aacaaggaaa tatgataaat gtgattacta aaaaaaacat agttgcaaag gttaaaaatt
     8641 taaaataatt acgcactcta tattcttgcg gtgataattt ttcaatttct ggaggatcaa
     8701 gtaatacaag cgatttataa aattcaagat catagctaag ataaaatatg ataacaatag
     8761 ccataaaaaa gataataaaa gatattaaaa aataagattt tacaaattct tttatgttaa
     8821 ttttaatcca ataatttaaa atagaaaaga caacaagaac acttaaagtt gtaagataaa
     8881 attttatatt agtaaaagca agaataaatc caaataaacc ccaaaaaata gaaagtataa
     8941 tatcttctcc catttaaact cctgtattat aaagcacatt ataagcttca tctttaaaat
     9001 caagtttagt gataaaatct ttactataaa gtttaaagtc caaaccataa ggagtgaatt
     9061 tttgatagtc ttgataatct tgattgtaaa gatagtattg tttggttttt ggagattgca
     9121 gaattctttg agggcttatt gaacaatcaa ttttatatcc atctatttcc cattcaagcc
     9181 attctctata agtccccatt tgatataaag aaccttctat gctaaaactc ttttcattaa
     9241 aatcccaagc tccaacaggt tgtcctagct tgataaaatt tcccttatca tcaaattcat
     9301 gtccttgatc taaaaaatca aagctatcat aaacataaac aagcatttca tcaacgcggt
     9361 atagcacttt ttctctatct ccttgaattt cttttttaat gcttaatttt gaaggaacaa
     9421 aattaaaaga aaatttacca ctacaagcat aaagagatag atcttgcatg agttcatcat
     9481 aagtttgctc taaagtctca tatgtattat aagtaagtcc aaatggcgat gtcgcaaaaa
     9541 taaatttatc aagtctagca taagaaaaat ctaccttaaa tttctctgca atatttatac
     9601 ctaaattttg ccaaatttgt ctgaaaaact catcatcacc cacacctata tattgacaat
     9661 ttaaagtatc aagctcatag ggcttacagt ctaaaatgcg tttataatct tttaaaattt
     9721 catcattttc tttaatgatg aaataagatt cttcattttt atcgcttcga ttttctttta
     9781 tatcgatcgc aaaatcaaat ttatattctc cttgaggtaa attttttaat atcaaaatat
     9841 tatgagtttt ttgtaagatt atttctattt gctttgtaaa attttgagtg tatatgtctt
     9901 cttttgtatg aaatttttta cttagtcttt ttattatagg aaaatgagaa taaaacttat
     9961 cccaatctag cgtagtgtaa aatttaatag aacgcctttc ttctcttact tcatttgttt
    10021 tattatctac atggcgcgaa aaacgctctg aattttgcct tagtcttttc atctcttggg
    10081 tttgtgtgtt gtttggataa ggggtgtaat gtaaaataag aggttctata cctttacttt
    10141 gtaagaaatt ttgtatttct tttagtcttt gttctgcttg gggattatta ggcttatttt
    10201 gttttacggg gagatgataa ttttgtattg tatctatctt agggctattt tgccacaata
    10261 cttgaagttg atagctaata gcccaaccta gtgttgctat ttcattattg cttttttgat
    10321 agcatttaaa ttcattataa caacactcta attctgtagg taaaactgtt tcatcatatt
    10381 gtaaagtgct aaaatttata ttattaatat aaatttggct ctttaaagtt tcttcattaa
    10441 tatgtcctac tggaacaatg ttttcccaaa aaagttcttc atccattatt tcatcctatt
    10501 gtttttatat tttagaaatt ccttaagcat gttctcattt aaatttatag aatacctagt
    10561 ccagcacatt ctagcatatt tataaagttt catatatttg gcttgttttc atatattatt
    10621 ttatccttta tgatttgcat ttgaattcat tactaggaga aaaataataa ctaggtgtat
    10681 cttgttttat agtgttatct tgatctaatt ctccaaagta aaaaggatta ttaggaagtt
    10741 catttgagcc tgtaaggaga gtggagttta ggaagatata agcttgatag ttttggagtt
    10801 cttcaaaagt aaaatctgtc gttgcttcta atttataaag ttcatcataa atactttgac
    10861 aatcaattat gcttttattt tcacaaaaca aataaatact ttttttatct ttatgaatag
    10921 aatataaaaa gtctttacct atcataattt tcctaaataa tacctatttt agcttttcca
    10981 ttaaaataca aagcttgtga tattttacaa actccaccta aatattgctc atcccaaatt
    11041 tgatctttta ttttataact ttttgaatta tatccgtata tttttgttat attattaata
    11101 ttttcaagac atttcatatc tttataaacc acaataaaaa ttctaaattc cccaatggca
    11161 attttatgag ctaagttttc ttgattatta ataaaggaac aatcttttct gtatttatta
    11221 aaatcatttt tatcaagaat taaaatgtat ttttcttttt tttgcgcctt taaaataaaa
    11281 tctatgattt ttgtttgact aatggtagga gctttatagc ttgcataata attatctcca
    11341 agctcttcta aaataccatt tgtttcttgc attatggtgg ctattaatga aagaaaatat
    11401 tcaaaatgat tgattttttc tggagaactt ctaaaaagtc caagaggtcc atttttaaga
    11461 gcgaaatttt tattattaat agcattattt tttaacacaa aagtttctgt ataaatttga
    11521 atatttttca taaaatgatt aagatactct atacactcac taaggctttt atctttgact
    11581 ttgttatagt tagcatctaa ttctaaaaga taggaataaa aatagagagt attaacaaga
    11641 ggttttatag agtgatcatt tttccctgta tatataccta aagcattgct tgcaccatat
    11701 tgagctgaag caatgatttc aattttacca ttatcataaa tatgagtgat tttttctgaa
    11761 acatctatag tgtattttcc taaaagatct tgcataattt ttatagtatt agggttgata
    11821 gctatattag gaaaattcca accataaaca ctaggggcat taaaagtata aacttcatta
    11881 gggctaaaag ataatttgtc tttatattta atatcgcaat atatcaaagc catttgagct
    11941 aaatacccac ccaatgagtg tcctacaaat ataattcttt tgtgtttgtt tttgattatt
    12001 ttatttactt gttctaaaaa ttctaaaaga aaagaagatt ggatattgcc attgagggat
    12061 agagttatgt cttgaactat atcttgaatc gagctaataa aattatcagt ttcagttccc
    12121 ctaaatccta ctataaattc atctttttct ttatcataaa acaaagtagc actaaagcca
    12181 cttgtagtgt taggctgatg aaattgaacc tcatatcttt gaatgaaatt tttagtctgt
    12241 aattctccaa attctccatt tagtttatca aaatttgtct tttcatcaaa gaaatttaac
    12301 atttttgatt gccaagcatc atcttgtctt aaatcaatca atacttcttt atctttatgt
    12361 ttttgactga caacatgttc taaatttacc tttatttctc tatagcctct aagagaattt
    12421 tcttcttgaa ttttttcttg attaaaatct aactcaaata tatttctagt atttaaaaaa
    12481 tcaaaataaa aataactagc
//
LOCUS       DAPIWV010000051        11418 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.052, whole genome shotgun sequence.
ACCESSION   DAPIWV010000051 DAPIWV010000000
VERSION     DAPIWV010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11418
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.052"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            20..544
                     /locus_tag="RJ272_001002"
                     /pseudo
     CDS             20..544
                     /locus_tag="RJ272_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
     gene            complement(556..2232)
                     /gene="ilvD"
                     /locus_tag="RJ272_001003"
     CDS             complement(556..2232)
                     /gene="ilvD"
                     /locus_tag="RJ272_001003"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDV7382099.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            2392..3039
                     /locus_tag="RJ272_001004"
     CDS             2392..3039
                     /locus_tag="RJ272_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HDV7382100.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            3104..3343
                     /locus_tag="RJ272_001005"
     CDS             3104..3343
                     /locus_tag="RJ272_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDV7382101.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            3376..3951
                     /locus_tag="RJ272_001006"
     CDS             3376..3951
                     /locus_tag="RJ272_001006"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDV7382102.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(3952..5397)
                     /locus_tag="RJ272_001007"
     CDS             complement(3952..5397)
                     /locus_tag="RJ272_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HDV7382103.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNYKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGTSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKNGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVECVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAIAKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(5407..9897)
                     /gene="gltB"
                     /locus_tag="RJ272_001008"
     CDS             complement(5407..9897)
                     /gene="gltB"
                     /locus_tag="RJ272_001008"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HDV7382104.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIVNKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIVGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(10032..11339)
                     /locus_tag="RJ272_001009"
     CDS             complement(10032..11339)
                     /locus_tag="RJ272_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDV7382105.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         3748 a         2208 c         1657 g         3805 t
ORIGIN      
        1 aaaatataaa ggagttatta tgaaaaaata ctttcaaaag cgctatactt tagccttttt
       61 tataggtata ttagcgggta ttttcggagc tattgttaaa tggggttggg aagtaccttt
      121 tcctccaaga aatcccaatg ttttttgacc agcagatgct ttagaacgtg ttactccacc
      181 taaaattttt ctagaacaac taggcttacc tactgattgg atttatatgt tttcaggtat
      241 gcaaatgcct ttgtcaattt ttatagtaca tgtcggtttt tctattattt ttggagtggc
      301 ttattgtatg atagcggaaa aatggcaccg tattactatg tggcaaggtg cagtttttgg
      361 attttttgtt tatctttttg cccatgttat tgtaatgcct ttaattgcag aagttccacc
      421 actttctgaa attccttttg atgaacacct gtctgaaatt tttggccata ttgtttggct
      481 gtggggcatg gaaatagttc gtagagatat aagaaatcgt ataaccaaag aaatagaaga
      541 atgaaaggaa acctttcatt ccatatctaa aaccgcacct ttactagcat tgctaacaag
      601 tttttgatac attctaagcc atcttgaaga cacctctttt tgaggcaatg caaattcttt
      661 tttacgttta gcaatttctt cttcacttac atttgcatgg atagtataag catctacatc
      721 aatttctatt tcatctccat cttttaaaag tcctataaga ccaccttcag ctgcttcagg
      781 ggaaatatga ccaacgctta aaccccttgt agccccgcta aaacgaccat cggtgattaa
      841 agccacatca gcacctaaac ccatacccat taaaagtgaa gtaggactta acatttcttg
      901 cataccagga cccccttttg gaccttcata gcgtattaca caaacatttc ctttttgcac
      961 cttgcctttg ataatgcctt ttatagcttc atcttgagag ttaaaacaaa cagctttgcc
     1021 tttaaatttt ctttctccga ttattcctgc ggtttttata acgcaacctt gctcggctaa
     1081 atttccaaac aaaatggcaa gcccacctac ttttgagtaa gcattatcta ctttacgaat
     1141 gatattttca tctttgattt tggcattttt taagcgttct ttgagacttt ctcctgtaat
     1201 ggtcagtgca tcaagttcta aaatatgtcc ttgtctgctt gaaatttcag ccataactgc
     1261 actcacaccg cctgctttgt ggatatcatc catataaaca ctatttagcg atggggctat
     1321 ttttgctatg tgtgcaactt tgcttgagat gaaatttaaa tctttaatgt ctagtgctac
     1381 ccctgcttca cgcgaaatgg caagcatgtg taaaactgta ttgctacttc cacccattgc
     1441 catatctact accatagcat tacgcacagc tttttgagtg atgatattgc gaattttaaa
     1501 acgttcatct agggcgattt cacaaatacg acgcgctgct tttcttaaaa gctcttctct
     1561 ttctttgctt aaagctaaga tggttccatt accttctagt gctataccca tagcttcgca
     1621 taaggtattc atagaatttg ctgtaaacat tcccgagcaa gatccaccac ttggacaggc
     1681 tgaacattct atatctttaa attcttcttc gctaattttt ttggcttcat aagcccctac
     1741 agcttcaaaa acagagctaa gactaatctt ttctcctttt ttagttaccc ctgaagccat
     1801 aggcccacca cttacaaaaa tggttggaac atttactctt aaagctccca ttaacatacc
     1861 aggagtgatt ttatcgcagt ttggaataca gattaaagca tcaagttgat gagcattcat
     1921 cactgtttca atggaatttg cgatgatttc acgacttggt aaagaataaa gcataccttc
     1981 atgtcccata gctataccat catctacacc tatggtatta aactcaaaag gcacacaacc
     2041 atttttgcgt atctcatctt taatgatttt agcataatca tttaaaaaat aatgtcctgg
     2101 gattatgtct atatagctat ttgctacacc tataaaaggt ttgtcaaaat cttcatcttt
     2161 caaaccacaa gcacgaagta aagaacgatt aggtgctttt aaatgtcctt tttttatcgc
     2221 atcgcttctc attgtaactc ctgataataa ttttttaaaa ttatatttag caaagcttaa
     2281 tttttgtgaa atttattttg atatacattt tcataaatga taaaaattat taattgacaa
     2341 aaatattttt ttataataca atgctttttg ataatcaaaa aaggagtcaa aatgagacaa
     2401 tatgaaacct ataaatgcca aaaatgtggt aatgaagtag aagttcaaaa tgtaggtgga
     2461 ggtaagctta gttgttgtgg tgaagaaatg aaatgtatca ctacagattt aactgcagta
     2521 aatttaatga aagcttttgc aggcgaatct atggcaagaa acaaatacga tttatttgct
     2581 gatgtggctg aagaagaagg ttggcatgcg gttgctagac attttagaga agcggctgaa
     2641 aatgaaaaat ggcatgcaag agcagaattt aaagcttatc atgaaatcgt tgatggcaaa
     2701 cctttagaag taactacaaa aaacctagta actgctgcag aaggtgaaaa ctatgagcac
     2761 acaactatgt atccaaattt tgcaaaaatc gctgaagatg aaggcaaaaa ggctatagcg
     2821 agattattta cagctattgg taaagtagaa atcgaacacg aaagagaata tctagcgctt
     2881 aaaaaaatgc tcgaagaaga agaatttttt aatagtgaag tagaagaatt atgggtttgt
     2941 gaagtatgcg gacatataca tcgtggcaaa aaagctccag cagcctgtcc tttatgtaaa
     3001 gcaccaaaag agtattttaa acgcgaattt ttgggttaag ttaagaaatt cttatccttt
     3061 ttaagataat attataatta ttttttaata aaaggataag aaaatgaaaa aattactatt
     3121 tttatttttt gctttaacgg cttttctctt tggtgctgta aatatcaaca ctgcaacact
     3181 aaaagaatta aaaagtttaa atggtattgg cgaagctaag gctaaagcga ttttagaata
     3241 ccgcaaagaa gcaaatttta caagtattga tgatcttaaa aaagttaaag gcataggtga
     3301 taagcttttt gaaaaaatca aaaatgatat cacaatagaa taaaagggca tttttgccct
     3361 tctttttaga aaaatttgaa aactttattt gacacaaaag aacttttaaa cgaatttgat
     3421 ataaatttaa tcggtattga tgaagcagga cgcggtgctt tagcaggtcc tatgatgatg
     3481 gcagcttgca aactgaacaa acaacttgat gggttgtgtg attctaaaaa actaagcgaa
     3541 aaaaaacgcg aagaacttta tgaaatcatc atcaaaaatt caaactatct catacttgct
     3601 ttttcttcag aacaaatcga cgcactaggc ttaagcactt gtttaaaaaa aggcttaaaa
     3661 cttataaaaa agcattttaa aacagaaaat aacttcttat atgatggaaa caccaaccta
     3721 ggtataaacg ggataaaaac acaaatcaaa gccgatgcta gcattttgca agtaagtgca
     3781 gctagcatac tcgcaaaagt tagtaaagat agggtgatga atttcttagc taaagacttt
     3841 ccttgttatg aatttgaaaa aaacaaagcc tatggcacaa aagctcataa agaatttata
     3901 gctaaatttg gaatttgcaa actccaccga aaaagtttta aacttttatg attattttgc
     3961 taaattttga tgcaaactca aagcacattc tataccatct tttatagccc aaacaactaa
     4021 agattgtcct tttctagcat ctccacaagc aaagattttt ttatgagtgg tttggaaatt
     4081 ttctgtgctt atgttgtttt tctcatctaa tttcactcca aaatttttag cgatagcttc
     4141 ttcgcacccg ctaaaaccca tagctaaaag cactaaatcc gctttataag tttttttaga
     4201 atttgaaatt tcaacattta tagctttgcc ttctttaaac tcgcgtttta aatcatttgc
     4261 ttcaacacat tctacatgag tttttcctaa aaatttcttt gtcatttttt gatattccct
     4321 aggatctttg ccatatacag caatggcttc ttctaaacca taatcagtag taaaaatgtc
     4381 agcttttaaa ggccaaggat tgttttggct tctttgcaaa ggtctttttg gacttctttc
     4441 aaaacgcact atagatttag ccccttgtct tgtcgccaca gcaatacaat ccacacttgt
     4501 atccccgctt cctataacca agacattttt acctttggcc gtatctgcac ccttgcctgt
     4561 ttttaacaaa gttttggtat tttgcgttaa aaaatcaagg gcaaattcaa ccccttttag
     4621 ctttctacct tctatatcaa gatctatagg cttacttgct cctgtacaaa gcaccaaagc
     4681 atcaaattct tttagaagtt ttgaaacctt atctttgctg tctatatttt cattcacttt
     4741 aaactcaatc ccattttttt taagcaaatc cacccgtctt tgaactatac ttttatcaag
     4801 cttcatatca gggataccat acatcaaaag tccgcctatt ttatcacttc tttcaaaaac
     4861 acttacttta taacctagtg aatttaaagt attagcacaa gcaagaccag caggcccact
     4921 tcctatgaca gcgatttttt tgccattgta ttgcttaggt ttatttactc ttactaaatt
     4981 ttctttaaaa gcattttcta taatggataa ttcattattt ttgatactca cacttgtgcc
     5041 atttatcgca cacacacaag aatcctcaca aggagcaggg caaacacgac cggtaaattc
     5101 aggaaaagga ttggtaagat caagtctttc ataagcttct ttccataaag aacgataaat
     5161 aagatcgttc cattcaggaa tgagattgtt taaaggacag cccacatctt ttccttcgct
     5221 catcacaccc gtatgacaaa aggctacacc acaatccata catcgtccgc cctgaatttc
     5281 ttgttctttt ttatccaaag gtatagtaaa ttctttgtaa tttaaaaccc tttccttagg
     5341 agcaattttt ttaaaatcca ttcttttaaa atctaaaaaa cctcttgcat ttcccatttt
     5401 tactccttat ttttgtgtga ttttcaaaaa tgctgctaaa tttggatctt tttcattttt
     5461 acaaagatca agcattttta acatcttttc ataatctctt ggcatgactt taaaaaagtc
     5521 ttttttatcg aatttttcta aaatatcttt agccttttta gaatctgtat aagtgatatg
     5581 tttttctatc acagctttta attctttttc atccttagca ttaagatctt taatatccac
     5641 aagctcggta tttacatgag cttcattgtg tcttccaaag atataaacaa cgcccccact
     5701 cataccagca gcgaaattcg cacccacatc tccaagaact acaacttgtc cacctgtcat
     5761 atattcacaa ccatgcacgc ctgttcctaa aaccacagcc aaagcccctg aatttcttac
     5821 acaaaatctt tcccctgcta taccatctaa atacacttca ccttttgtag ctccgtataa
     5881 acaagcattt cctgcgatga tattttcttc aggtgaaaaa gtggcttcat ttgaaatttt
     5941 tgctatgatt ttaccaccac ttaaaccctt gcctaaataa tcattgctat cgcctacaat
     6001 ctcaagttta atacccttta acaaaaacgc tccaaagcta ttgcctgcat tgcctatagc
     6061 tttgatatgg atactatctt catctaaagc atcttttcca taagttttta aaatttcgct
     6121 tgaaagcata gttgcaaaag tacgactttg atttcctact tctaaagaaa gtttgatagg
     6181 ctcttttttc tccacagcat ttttacaaag tggtagtaaa attctataat caatcgtttt
     6241 ttcaagttta ttgtctttat aatctttaaa atgcacagcg gttctattat aagtaggcaa
     6301 ggattttaaa attttatcta aatttagctt tcctgcttta ccttgcacac ttttttggcg
     6361 gagtttatcc acgcgaccta tcatatcatc taggcgttca aaaccaagcc ttgccatgta
     6421 ttctctaagc tcctcagcta taaaatacat gaaattaatc acatcatcta ctttgccttt
     6481 gaaacgatct ctaagttctg tatcttgagt ggctatacca aaaggacagg tatttagatg
     6541 acaaactctc atcattgtac aacctaaaac aatcaaaggc gcggttgcaa aaccaaattc
     6601 ttcagctcct aaaagtgctg ctatggctaa atcacgccca ttcataagct ttccatcagt
     6661 ttctaatctt accctatctc taagcttatt taagatcaaa gtttgatgcg tttcagctaa
     6721 gcctaactcc caaggaattc cagcatgcgg tatagaagtt ctaggacttg cacccgtacc
     6781 tccatcataa cctgaaacaa ggattaaatt cgcgcctgcc ttagccacac ctgcagcaac
     6841 cgttcctatg ccattttcgc ttacaagttt tactgaaatt ttagcgtctt tgttcgcatg
     6901 ttttaaatca taaatgagtt gagccaaatc ctcaatagaa taaatatcat gatgaggagg
     6961 tggggaaata agcgtcacac ctgcagtaga atgtctagcc ttagctatcc aaggatagac
     7021 tttaaagccc attaattgtc cgccctcacc tggttttgca ccttgagcga ctttgatttg
     7081 aatttctttt gcatgactta agtagtttaa atccacgcca aaacgcccac ttgctacttg
     7141 cttaatggct gagtttttat ccacaccctc tttgatttca tagcgttctt catcctcgcc
     7201 accttcacct gaatttgatt tagcacctat tttattcata gcctgtgcta aacactcgtg
     7261 tgcttcttta gaaatagaac cataactcat cgctcctgtt ctaaagcgtt taactatact
     7321 ttctacactt tcaaccttat ctatactgat agcttcacta aaatcaaatt ccatcaaaga
     7381 acgcaaatta acttgttttt catctactaa agccgagtat tttttaaagc ttttatagtc
     7441 tttgttgcga caggcttgct gaagattaaa aatcacaagt ggatcgatta aatgttcttc
     7501 tttagcactt ctaaaaccat gaattccttt agaatctaaa gccttatgcg tatcgttaaa
     7561 agcatgttta tgtaaagcaa tgagctcttt ttcaaaatct tctaaatcca taccttcaat
     7621 gcgtgaagtt gtagaagtga agtatttatc aatcacttta gagcttaagc ccagacattc
     7681 aaaaagtgca gagccattat aactttgcaa ggtagaaact cccattttag aagcaatttt
     7741 gactatgcca cttgaacttg ccttgatgaa attttctacc gccttttcat aacttaaatt
     7801 taaatcttta ttgacaatga gtttttgtat gctctcataa accaaataag gattaataac
     7861 agtcgcacca taacctaaaa gacatgcaaa atgatgaatt tctctaggtt caccactttc
     7921 gataataaga cttgtgtgtg ttcttaaatt ttttcttact agatgattat gcactccaga
     7981 aacagcaagc aaagcgggga tataagcgtt tttttcatcc actcctttat cgcttaaaat
     8041 gataatagaa acaccttttt taacctcatc ttctatctta acgcaaagct catctaaagc
     8101 cttttctaaa gtttttttag aataatcata aagtatagaa aattctttaa cttgaaattt
     8161 atttaaagcc ttaacttcaa aaagttcttc attgcttatc acaggcaagg ctatttttac
     8221 gcgttttgca ttgttttcat caggttttaa taaattgcct tcgcttccta gataaatcct
     8281 tgtagaagta acaatctctt ctcttatggc atcaagagga ggattagtta cttgtgcaaa
     8341 aagttgttta aaataattat acaaaggttg ataagtttta gaaagtatag ccaaaggagt
     8401 atctacaccc atagctgcta tagcttcttt accattttga gccatagcag ccacactcat
     8461 tttaagctca tcataactcc aaccaaaagc tttttggagt tttaaaacct catcttcttt
     8521 taaaaactga tgtttataaa ctccgctttt ttgtttttca agttcaacta aatttttaag
     8581 ccatttttta taaggcttag cattagcata atgctctttg atttcattat cagctataac
     8641 cctacctctt gctgtatcaa cgagtaaaag ttttccaggt tctaagcgtt ttttggcttt
     8701 gatatttttt tcatcaagtt ttaaagcccc tgtttcactt gaaagtatga gcatatcatc
     8761 ttttgtaaga taataccttg aaggacgaaa accatttcta tccaaactcg cccccataat
     8821 cactccatca gtaaaaacta tagcagcagg cccgtcccaa ggctccatca ataaagaatg
     8881 atattcataa aaagcacgct ttttgctttc catattttca tttttatgcc aaggttctgg
     8941 caccatcatc ataaaagctt cttctaaagt acgaccattt agagctaaaa attctaaagt
     9001 attatcaaac attgcagaat cactgctagg cttagctatg ataggaaaaa tttcatctaa
     9061 attttcaaaa tactcacttt gcatcaagcc ttctctagct cttatgctat caacatttcc
     9121 gcgtatggta ttaatctctc cattatgcac catataacgg tttggatggg ctctttccca
     9181 acttgggaag gtattagtcg aaaagcgaga atgcaccaaa gcgatggctg atttcatatt
     9241 gacatcttta aaatcaagat aaaaatcgct caattgagtt gaaagaagca ttcctttata
     9301 aactatggtg cgtgaagaaa aacttgaaaa ataaaatttt ggcacattaa tagctctttt
     9361 ttctataagg cgacgcgtac tataaagcac tctttcaaac tcaagtcctg cacttatttt
     9421 acttggtttt ttcacaaagg cttgtaaaaa ataaggcata gcttttaaag cacttgcacc
     9481 tatatcgcta ggattaaaag gcacttctct aaaacctaaa aattcaagtt ttttatcctt
     9541 taaaccttgt aaaaatatct cttttgcttc ttcttttgca tcagtattgg gtgataaaaa
     9601 catctgtgct acggcataat cacccttttt aggaagttca aaacccaatt cttgagtttt
     9661 aaaaaaatca tgtggaattt ggatcaaaat ccccgcccca tcacctgaat tttcttcagc
     9721 tcctgcacca cctcggtgtt caagattcat caaaatttct aaagcatcac aaataacctt
     9781 ataagaagca ataccgcgta tattagcaac tgcagcgata ccacaggcat cgtgttcgtt
     9841 ctttgggtga tataaaccta tgctttgatt attttctagg atattttcta aatccatttt
     9901 gctctcctta ataagactga tttaaatttt gttagcttta taaggattat agcatacatt
     9961 tttttaaaat cgatataatt tttatcttaa aaataaataa attaaaaaat attttgatag
    10021 atttgtaaaa attataaaaa catggcgata atactaccta aaatcaataa tgggccatta
    10081 tagaaaataa aagttggtat gcaagtatct ttaatgtgat cgtgttgttt atcagcattt
    10141 aatcctacag tagttcccat ggttgtttca ctagctggac ttcctgcatc tcctaaagct
    10201 cctgctactc ctaagataaa tataataagt gctgtactaa aaccaagttc caaacaaata
    10261 ggacaaaaaa gcgtagctat gataggtata gttccaaaag aagtacctat acccatagtg
    10321 atgataagtc ctattaaaag catgaaaaat actgctaaaa atttactttg ctccatccaa
    10381 ggaacgactg aatttacaag atctactact gatccacttt cttttaaaac ttctccatat
    10441 cctgcagcaa caaggataac aaaagctata aaacccatca ttttaagccc atcatcaaaa
    10501 acttcattga cttttgaaaa ttcaactcca cccaaaataa ccattaaaac aaaacccaaa
    10561 agccctgata aaggcaaatt catagtcaaa atttgcaaaa ttaaagttaa aacaagccca
    10621 gctaaaacgc cccattcctt acgcgtcatt tcaagatttt ctaaatccac tttagcaatt
    10681 tctacttctt gatactctct tggcttacga taaaacacaa aaagcgctag aaaaagtcct
    10741 gctatcatac aaatagcagc aaaatacata gtatttgtaa catcatttaa agatacactt
    10801 acattatttg catttaaatt atcttttaaa agatcttgaa aagtaagccc aaaacctact
    10861 ggcaaaacca tataaggcgt agtaaggcca aaagttaaag cacaagcaac cgctctacga
    10921 tcaattttaa gtttattaaa aagacttaaa agaggtggaa tcaacaaagg tataaaagct
    10981 acatgaatag gaattaaatt ttgagaaaaa caagaaatca aagctataga caaaagcaat
    11041 aaatattttt tatgagatat aaaatgactt actatcttga tcaaatatgc agttaaattt
    11101 gtctttgaaa tcgctgcagc aatggctcct aagagtatat agctaagagc tgtttttaaa
    11161 ttttctttca ttccgcttat aagtatattc atagtatcta cgagttcaag atgagaaaat
    11221 acacctgcaa caagagctga gatcaaaaga ctcaaaagca cattaaaacg aaacaaacaa
    11281 agtaaagtca tcaaaacaac actgataatg ataggattag taagtaaagt caaaatcatt
    11341 ccttaaataa ttttaaaaat ttaattgtag aaaaaactta gttaaaatgt aataaaactc
    11401 gaacatataa tgatttta
//
LOCUS       DAPIWV010000052        11371 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.053, whole genome shotgun sequence.
ACCESSION   DAPIWV010000052 DAPIWV010000000
VERSION     DAPIWV010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11371
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.053"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..1339
                     /locus_tag="RJ272_001010"
     CDS             <1..1339
                     /locus_tag="RJ272_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7382106.1"
                     /translation="EKITPIANKILKELNSIKNDFFKALNKPENLMIKDPNILKQTAT
                     TFEKLENTLKNILGNQASKIQDKENILENLLSNKENIKEEKLNHNTKNQDEEKYIKVS
                     KEETLADDAKTNIKQDVKNEENLPKKEVNANLDSSTKTHEENIKENPKFYETKTESKT
                     SINTNTNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEFIKQNIVKNLAFNVENLDLEQV
                     QDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKNLEHKLNLSIKDLVQIKPKTEQ
                     DIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLLAQIEINQLMSLANDSINTYLP
                     FSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEILISLNNEKYIDINIMAENIEF
                     RKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRNMKNLDLEMGMDKKV"
     gene            1336..1617
                     /locus_tag="RJ272_001011"
     CDS             1336..1617
                     /locus_tag="RJ272_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HDV7382107.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1614..2414)
                     /locus_tag="RJ272_001012"
     CDS             complement(1614..2414)
                     /locus_tag="RJ272_001012"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7382108.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(2411..3535)
                     /locus_tag="RJ272_001013"
     CDS             complement(2411..3535)
                     /locus_tag="RJ272_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDV7382109.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            3622..4917
                     /locus_tag="RJ272_001014"
     CDS             3622..4917
                     /locus_tag="RJ272_001014"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7382110.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCSEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AITYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            4920..5201
                     /locus_tag="RJ272_001015"
     CDS             4920..5201
                     /locus_tag="RJ272_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDV7382111.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            5198..6823
                     /locus_tag="RJ272_001016"
     CDS             5198..6823
                     /locus_tag="RJ272_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HDV7382112.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLVQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLSKS"
     gene            complement(6720..7205)
                     /locus_tag="RJ272_001017"
     CDS             complement(6720..7205)
                     /locus_tag="RJ272_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382113.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            7301..7792
                     /gene="mobB"
                     /locus_tag="RJ272_001018"
     CDS             7301..7792
                     /gene="mobB"
                     /locus_tag="RJ272_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HDV7382114.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            7794..8636
                     /locus_tag="RJ272_001019"
     CDS             7794..8636
                     /locus_tag="RJ272_001019"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDV7382115.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            8629..8826
                     /locus_tag="RJ272_001020"
     CDS             8629..8826
                     /locus_tag="RJ272_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382116.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            8836..10722
                     /gene="metG"
                     /locus_tag="RJ272_001021"
     CDS             8836..10722
                     /gene="metG"
                     /locus_tag="RJ272_001021"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDV7382117.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFIQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            10726..>11371
                     /locus_tag="RJ272_001022"
     CDS             10726..>11371
                     /locus_tag="RJ272_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382118.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEKNQKIIFDFNKID"
BASE COUNT         4399 a         1698 c         1594 g         3680 t
ORIGIN      
        1 agaaaaaatc acccctatag ctaataaaat tttaaaagaa ttaaattcca tcaaaaatga
       61 ttttttcaaa gctcttaata agccagaaaa tttaatgata aaagatccaa acatccttaa
      121 gcaaactgct accacctttg aaaaacttga aaatacttta aaaaatatac taggcaatca
      181 agcttctaaa atacaagata aagaaaatat tttagaaaat cttttaagta acaaagaaaa
      241 tatcaaagaa gaaaaactta atcataacac aaaaaaccaa gatgaagaaa aatatataaa
      301 agtatcaaaa gaagaaactc tcgcagatga tgctaaaacc aatattaagc aagatgtaaa
      361 aaacgaagaa aatttaccta aaaaagaagt taatgcaaat ttagattcta gcacaaaaac
      421 tcacgaagaa aatatcaaag aaaatccaaa attttatgaa acaaaaacag aaagcaaaac
      481 ttcaatcaat acaaatacta acacaaacaa cacgcaaaat ttaaataatt ctcaaaatat
      541 tcaatctaac aataaccaaa ctatgcaaaa tatttttaaa aatcaggaat ttataaaaca
      601 aaatattgta aaaaatttag catttaatgt agaaaattta gatctagaac aagtgcaaga
      661 tttaagtaaa aatttaagca atctttctcg tagacttaat gaaagcttaa aagaacttga
      721 accctatact caaaatgcca agcttaatca agcagaactt aaaaatctcg aacacaaact
      781 caatctttct atcaaagatc tagtgcaaat taaaccaaaa acagaacaag atatagctga
      841 atctttacat catgatgtaa aatcaacact tttgcaaatt tcaaatttgg ctaaaaatga
      901 aggcaatgaa gctgtataca atcaagctaa tcgtctttta gcgcaaattg aaatcaatca
      961 gcttatgtct ttagctaatg attctatcaa tacttatctg cctttttctt gggatgattt
     1021 aaatgattct aaaattatgt ttagacgcgg aaaaaaggac aaattttttg ctcagattaa
     1081 actcgaattt gcaaaacttg gggatttaga aattcttatt tctttaaata atgaaaaata
     1141 tatagatatt aatattatgg cagaaaatat tgaatttaga aaaaccatct atgaaaatgc
     1201 ccatgagctt aaaagaaata tcaataaagc aggactttta agtgcaaatt tctttgtagg
     1261 tgatatcata agaagtaaat ttgatactag aaatatgaaa aatttagatc ttgaaatggg
     1321 tatggataaa aaagtatgag caaaatcaaa agatcgatta aaaaagctgt agctctaggc
     1381 tatcaaaaag aaaaaaactc tgcaccaaaa gtgcttgcaa gtggcaaagg cgaaagtgct
     1441 gctaaaatta tttctttagc caaggaacac ggagttccta ttaaagaaga tgaagattta
     1501 atagaaattt taagcaagct tgacttaggt gatgaaattc cacctaatat gtataaagct
     1561 gtagctgaag tttttgcctt tatctatcaa atggcaaata aaactcctaa aaactaatcc
     1621 gctatttttt ctccaaattt aataccctgc cctactttta aattaaaagt taaaagtcct
     1681 ttttgagaga ttaaaactat agtagaacct agctcaaaat ttcctagttc ttcgcctttt
     1741 ttgaaattta aattttcata ttttctagta aaattatgag aaattttagc attggtttgt
     1801 atgcttgcat caaaattaaa acgcattttt cctacatttt gcgctcctac aaaaacaagc
     1861 caaaaaatac ctttttcatt ttgacatttc aagctcactc tttcattttt tacatataaa
     1921 ttactaatgc gttctaaatg tttttcattt acgctataaa gcactccact tgtgtaagtt
     1981 gcacttaaaa tttgcatatc acaagggctg tgataacgat gataatcttt tggagaaaga
     2041 taaatattga cataatcaag cccattttta agctcatctt tttcaaagct atcttttaaa
     2101 agctcctcaa tgctataagt atgtcctttt atagaaaaag caaaatgttc ttcatttgcc
     2161 aaaaaagtac ttccacactc taaaatttta ccatcacttg gactgataaa accttcttca
     2221 agctttcttg gaatttgcaa agttcttgta aaaagagcat ttaaactctc gtattcacaa
     2281 gggcttttaa attcactcat atcgatatta aaatacttaa cataattttc attaataact
     2341 ttttgtatca ttttaggaaa tttaatcccc gctacaaaac caaaaagtct cgaactttct
     2401 tttgaaaaac tcattttttt ccttttaaat ttaaaatcac tatttcactc ggagcaaaaa
     2461 ctctaagact tggcccccaa aatcctgctc cactactcac ataaagctta gttttttctc
     2521 ctaaatcata aagcccatga acaaaacctt gctgaagttt aactaaaaac ataaaaggga
     2581 aaatttgccc tccatgtgta tgcccactta aaacaagatc aaaatcactt aaatcataaa
     2641 gcaaagctgt tttaggttga tgtgtgagta aaatactagc tttacttgta tttaaatcca
     2701 cttttattct tgctaaatca ggagcatata aacccctatc aagtccggct aaatctccaa
     2761 gtccagcaat atttataaaa cccaaatcta aattttgatt gactaaaatt ttcatattag
     2821 tatgttttct aagcaaatcc aaaacttcat tgataccatg ataatactca tgatttccca
     2881 aagcataaaa agttccgtaa gtggagttaa aatcattaag ttttgagatg taatttttta
     2941 aatctttagg attagtatca atcagatccc ctactattac aaccatatca ggactttgca
     3001 aattcacttt agtgatgagc ttgtctaaaa aattttcatg caaattttta cccaaatgta
     3061 tatcagtaag catgacaatt tttaaatctt ttttaagatt tggtatttca acatcaacac
     3121 tctttacttc aggtgttttt agagcattat ttatacttac ataaattaaa aacacactta
     3181 aaactataag agaaagttca aaaatcaaac gcaaaataag attatatgtt ttatctcttt
     3241 tacccataag agctaaaatc aatttaacaa aatcccatgc taaagtcata aaaaacaaac
     3301 aataagtcgg cgcataaaac atggctaaaa tttcatacca agtatcactt aaatattcat
     3361 ctctacgaaa tattaaaaac acagcttgag ctaaaaaaag cacaataaaa ataaaggaaa
     3421 aaattttata aaaatactta aaaagagtaa ttttcttgat taatctttta taaatataaa
     3481 catttgctaa gccaaaaatt aataacacaa tgaaagaaaa aattaaaaat atcatacaaa
     3541 gtattataac caagtaaaat taaatatccg tataaatttt tctgttataa taagctttta
     3601 aataatttta aaggctataa gatgtaccgt tttgcacctt ctcccacagg tgatatgcac
     3661 ataggaaatt tacgcgcagc aatttttaat tatatctgtg caagacaaaa aaatatggat
     3721 tttatcttac gtattgaaga tactgataag gctagaaata tagcaggaaa agaagaagaa
     3781 atcaaagaaa ttttaaatct ttttagtatt tcatggcagc attactatat acaaagtgaa
     3841 aatttaaaat tccatcgcca aatggcttta aaacttgtaa gcgaaaaaaa agcttttgct
     3901 tgtttttgca gcgaagaaga acttgaagca aaaaaagagc tggctaaaaa acaaggtaaa
     3961 gcttatcgct acgatggcac ttgtgaaaaa ctagccgata ttgatgtttt agaatgtgaa
     4021 aaaccctttg ttatccgtct taaaaaacct actcatacta tgaaatttac tgattttatc
     4081 aaaggcgagc ttagttttga gcctgaaaac atagactctt ttgtgattat gagaacggat
     4141 aaaactccaa cttataattt tgcttgtgcg gttgatgata tgcttgaaaa tgtcacttgt
     4201 attatacgcg gagaagatca tgtttcaaac actccaaaac aagaacatat ccgcgcaagc
     4261 ttaggttata ataaagccat aacttatgca cacttgccta tcattttaaa cgaagaaggt
     4321 gttaaaatga gtaaaagaga agcacattct tctgtaaaat ggctacttga aagtggaatt
     4381 ttacctagcg caatcgcaaa ttatcttgtc atactaggca ataaaactcc ttgtgaaatt
     4441 tttaccttag aagaggctat aaaatggttt gatatttcta aagtttcaaa agctcccgca
     4501 agatttgatc ttaaaaaact tttgcaaatt aatcgcgaac atatcaaaat gataaaagat
     4561 gatgagctta ataaaatttt agatttaaac aaagatcttg caccacttgc taaattttac
     4621 actcaagaag caagtactat aaaagaactt aaagaaaaaa tgcaagctat ttttaacgca
     4681 aaaaattttg gcgagtttga aacagaatgt aaaattttaa aagaactctt aaaagatatt
     4741 gaactttttg aaaattatga agattttaaa aatgaacttt taaacaaaag caacttaaaa
     4801 ggtaaaaaat ttttcatgcc tttaaggata attttaacag gaaatatcca cggacctgag
     4861 cttagcgatc tttatcctta tattaaaaat tttattcacg aattagcaag gatttaacta
     4921 tggttataga ctcttttatt atttctattt ttcaagtact acaaattgtc attaacattt
     4981 atacttggat tattatcatc acagcacttc taagctgggt aaaccctgat ccttataatc
     5041 ctatagtgca aattttatat aaactaagct accctgctta cgccttagtt agaaaaattc
     5101 caacacgcat tggtaatatt gatcttgcgc ctttgattat agtcttagca ttgcagtttc
     5161 ttggcatttt tcttgggaat atcttaagga gtatattgtg ataaaaaaaa tactcgtttt
     5221 tttatttatt ttttcaagtt taaatgctac acaatatagt atagaaaaac tcaaaaagga
     5281 agaaaattca cttgctaagg attattatat ttataggctt ttagaaaaaa ataaaatcag
     5341 taaaaaagat gcacaggatt taaattctca tatttttcgc tatataggaa aaattaaatc
     5401 tgaacttgaa aaaatcatcc ctttaaagcc ttatatcaac ccaaaatatg ctaaatgcta
     5461 tacctataca gcaaatacta tcttagatgc aaatttaact tgtcaaagtg tgcgcttaaa
     5521 ttcattagtt tttatagcga gtctaaattc caaagaccga actactttag ttcaaacctt
     5581 taaaaatcaa agacctgatt tgacaaattt attgctagct tttaatactt ctgatcctat
     5641 gagctatata gtacaaaaag aagatattaa tggttttttt aaactttata attattctaa
     5701 aaaatacgac ttagatttaa atacaagttt agtcaataaa ctaccaaacc acattggttt
     5761 taaagatttt gcacaaaata ttattattaa aaaagaaaat ccaaaattta gatattctat
     5821 gctagaaata aatcctgaaa atgtaagtga agattctgct ttctatttag gagtcaatgc
     5881 cttaacttat gataaaacag agcttgctta tgactttttt aaaaaggcgg cacaaagttt
     5941 taaatcgcaa agtaataaag acaatgctat attttggatg tggttgatta aaaacaatga
     6001 agaagattta aaaactttat cgcaaagttc ttctttaaat atttatagtc tttacgcaaa
     6061 agaacttacc aacacacctt ttccaaagat agaaagcctt aatccaagca agaaaaaaaa
     6121 taattttaat atgcaagatc cttttgcttg gcaaaaaata aacaaacaaa ttcgcgatgc
     6181 taacgcaagt caactagatg tcttggcaaa agaatttgac acacaagaaa ccttgcctat
     6241 ttatgcttac atattagaac gcaaaaataa ttttaaaaaa cattatttta taatgcctta
     6301 ttatgacaat ataaaagact ataacaaaac aagacaagct ttaattttgg ctattgccag
     6361 acaagaaagt cgttttattc caactgctat ttcagtttct tatgctttag gcatgatgca
     6421 atttatgcca tttttggcca atcacatagg ggaaaaagaa ttaaaaattc caaatttcga
     6481 tcaagatttt atgtttaaac ctgaaatagc atattacttt ggaaactatc atctaaatta
     6541 ccttgaatca cgtttaaaat ctccactttt tgtcgcttat gcttataatg gcggtatagg
     6601 atttactaac cgtatgcttg caagaaatga tatgtttaag acaggcaaat ttgaaccttt
     6661 cttgtctatg gaactagttc cttatcaaga aagccgaatt tacggaaaaa aagttctagc
     6721 taattatatt gtgtatcgac atcttctgaa cgatagtata aagatttcgg atatttttga
     6781 aaatttaatt caaaacaagg caaatgatct aagcaaatct tagctacaag cctaatctct
     6841 tccttgacac taggaagaga tgctttaaaa taatcagtat agttgttttg tattatatat
     6901 tttaaatact catcatccaa tttttcaata ttggcttttt tattattgat aaaaacttct
     6961 aaattttgaa tttttaatgt atttggagta aaagataaag ctaatacatc atctttactt
     7021 gtcttgtcta gaattgggtt taaataagac atagttataa tggcattaat cttatcttgt
     7081 gtgattttgt atttttgagt aaacattaaa gtttgagatt ttaaatttgt atccacaatc
     7141 gcctgatctt ttaaagaaca agctccaagc aaaaaagcac ctaaaattac actataaatt
     7201 ttcattcttt ttccatattt tttagtatta ttgtagcctt ttaaccctat tttttggttt
     7261 aaaaagatat aattttgcaa aaaaattaag agtatatttt atgaaacaac ttattatagc
     7321 ttttagcggg ccttcaaatt caggaaaaac tacactcata accaaaatag ctgataattt
     7381 tttgcaacaa aatttaaaag ttttaatcat taaacatgat cctgccgata aagctcaatt
     7441 tgattttaac ggtaaagata gttttaaatt ttttcaaagt ggagctgaag tcatggtttt
     7501 aagccctaca agaacaactt ttttttctca tgaaaataga gatattttaa aagctttaaa
     7561 attaagccct gattttgaca tttgtttggt tgaaggatta aaaactcttg atttaccacg
     7621 cattagcgta ttttgcaaag aaattgatga aagttatttt attttttcaa acgccattgc
     7681 aagctatgaa aaaatttctc acccttatct tacttggctt gatttaaacg atatacaagc
     7741 tatttgccaa tacatactta aaaatgctaa aaatttacaa ggagaattat aaaatgcaag
     7801 aagtgatttc ttatatacaa aaagcggttt tagaaatttc taacgcttta aaatttcccg
     7861 atacaagcta cagtcaaaat caaaatttta caggcgatac ccaactcaaa tttgatgttt
     7921 taagcgatga aatcatcaca aaaactctaa gtcaatgttc aagtattaaa gccatcataa
     7981 gtgaagaaaa agacgaaatt ttaacgctta acgagagggc aaattttatc gtagcttatg
     8041 atcctttaga cggttctagc ttaatggatg ttaattttgc cataggttct atttttgcta
     8101 tctatgaaga aaaagcaagt gctaaaaatt taagagctgc gctttatagt atgtatggag
     8161 cgcgattaga acttgtgatt tgcaaagatc agccaaaact ttatcgctta aatgcaaata
     8221 atgaatttat ttttataaaa gatcttaaaa tgaatgaaaa aggcaagatt aatgctacag
     8281 gcggaacgca aaaattttgg gaagaaaaac acgctaaatt tatcaaaagt ctttttgatg
     8341 aaggctatcg cttaagatat tctggagcca tggtaagcga tatcaatcaa attttattaa
     8401 aagggggtgg catttttagc tatcctgcaa cacaagatgc gcctaatggc aaacttcgtg
     8461 ccttttttga agtctttcct ctagccttta tcatagaaaa agcaggcgga aaaactacaa
     8521 atggaaaaaa ccgctctttg cttgaacttg aatttgataa aatccatgcg acaactcctt
     8581 gtttttttgg ctcagaatat gaaatttcaa aacttttaaa ggcttacaat gaatgaagtt
     8641 agagatgaat ttgagcaaga tatggataaa aaaaaagaaa ttttactttc atgtcaaaac
     8701 tcaaaaaacc taaactcttg ttataattgc gatgaaattt ttaactgcca aactagaaaa
     8761 aattatgttg atgcagtcta taacagtatg tctaagggta aaaccgaagg cggatttgac
     8821 ttttaaagga aaaaaatgcg ttatattaca acaccaattt attatgtaaa tgatgtgcct
     8881 catttaggtc atgcttatac taccatcata gccgatactt tagcaagatt ttatcgtttg
     8941 caaggacatg aaacaagatt tctaacagga acagatgagc atggacaaaa aatcgaagaa
     9001 gctgccaaac taagaaattc cactcctcaa gaatacgctg ataaaatcag ttttgaattt
     9061 aaaaaattat gggatgaatt tgaaatcacc tatgatattt acgcaagaac aactgataca
     9121 aggcatattg aatttgttaa agctatgttt ttaaaaatgt ggcaaaaagg tgatatttat
     9181 aaagatgaat acgaaggaca ctattgtatt tcttgtgaaa gcttttttac tcaaagtcag
     9241 cttattaacg attgttcttg cccagattgt ggcaaacaaa ctagaatttt aaaagaagaa
     9301 agctattttt tcaaactttc aaaatatcaa gataaaattt tacaatggta tgaagaaaaa
     9361 gatcccatct tgccaaaaaa caaaaaaaac gaacttataa attttatcca aaacggcctt
     9421 aaagatcttt ccattacaag aacaagtttt gattggggga ttaaactgcc tcaagaaatt
     9481 aatgatgata aacatattat ttatgtatgg cttgatgcac tttttatcta tgtaagctca
     9541 cttgactttc aaaacaaggg ggaaaatgct aaattttggc ctgcgcatgt gcatttagta
     9601 ggaaaagata tcttgcgttt tcatgccatt tattggccag cttttttaat gagcgtggat
     9661 ttgcctttgc caaaatttat aggtgcacat ggctggtgga ctaaagaagg tgaaaaaatg
     9721 agcaaatcta aaggcaatgt tgtaaaacct aaagaagtgg ttgatatcta tggaagcgaa
     9781 gcttttagat attttttact tagagaagtg ccttttggta acgatgggga ttttagcgaa
     9841 aatatgctga taaatcgtat caatgcagag cttagcaatg aatttggaaa tttacttaat
     9901 cgcattatag gtatgagtac aaaatattct caaggaaata tttcaaaaga aggtgtttta
     9961 aaatttcaca atgttgaatt aaatcaagca aaagaacact taaatttagc ggtagaattt
    10021 ttagaaaact tacagtgtaa tcgttattta gaagaacttt ttaaagcctt aagtgtagca
    10081 aatttagcta ttagtaaata cgaaccttgg aatttaatca aagaaaacaa acacgaacaa
    10141 gctaacgctt tagttgcact ttgtgcaaat attttagcca aaacaagcct tttattaagc
    10201 cctactctac caaagtcttg tcaaaaggtg gccttagctt taaattttga aatttcatct
    10261 acaaattatg caaaaatgat acttgataat aaacttttag attttaaagc aaatccttgc
    10321 gaagctttat ttccaaaagt agaaaaagct cttttaaaac aagaaattaa agaagaacct
    10381 aaaaaagaag aaagtcctaa aataaaaatc gatgattttg caaaaattga aatcaaagtc
    10441 gctaaagtgc ttgattgtca aaatatagaa gggagtgaaa aacttttgaa atttcaactc
    10501 gaacttgacg ataaagaaat ccgtcaagta ctctcaggca tagcaaaata ctataaagcc
    10561 agtgatttaa tcggtaaaca agtttgcatt ataagcaatc ttaaaaaagc taaaattttt
    10621 ggacatgaaa gcgatggtat gatactttct gcaaaaagcg gagataaact tgttttaatc
    10681 acccctgaac aacttgtaca aaacggttct ttagtgggtt aaaatatgca aattagcaat
    10741 ttaggcgaac ttttaaacgc gacactcatt catgaaggta gcgttttaag cgtggaaggt
    10801 tttgccataa atttaaatga acttaaagca ggctttgcct tctttaataa cgataaaaaa
    10861 gaaattaccc aagctgtaaa aaaaggcgct tatgctataa ttacagaaaa tgacattact
    10921 attgaagata aagacatttt ttactttaga gtagaaaatc tagaacaagc tcttgtaaga
    10981 tttttacgct ttttttgcga agataaagaa tgtgaatttt tgctttttaa atcttacgaa
    11041 ctaagtcttt gtaaggcttt ttattttaac attttaaaag gaaatatttt tgctgatttt
    11101 gaaaaactaa tcaaagcaaa aaagggtgaa attttttgct actgtgaaga aaattactta
    11161 aataaacttt gtgcctattc tcatagtcta aaagatgcta attttacctt attatcgcga
    11221 tctagcttct tttttacaac tttgatttgt gaaaatttat attttaaaaa tcttaatttg
    11281 cctttttttt acgcaaatag ttttgcaaaa attatttctt ttttaaaaga aaaaaatcaa
    11341 aaaataatat ttgactttaa taagattgat g
//
LOCUS       DAPIWV010000053        11196 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.054, whole genome shotgun sequence.
ACCESSION   DAPIWV010000053 DAPIWV010000000
VERSION     DAPIWV010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11196
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.054"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            37..1029
                     /locus_tag="RJ272_001023"
     CDS             37..1029
                     /locus_tag="RJ272_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HDV7382119.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPNNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGFEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            1040..1810
                     /locus_tag="RJ272_001024"
     CDS             1040..1810
                     /locus_tag="RJ272_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7382120.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFHPKEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSNEVKKFIEEKYQGALIPTF"
     gene            1822..4086
                     /gene="metE"
                     /locus_tag="RJ272_001025"
     CDS             1822..4086
                     /gene="metE"
                     /locus_tag="RJ272_001025"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDV7382121.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            4096..4944
                     /gene="metF"
                     /locus_tag="RJ272_001026"
     CDS             4096..4944
                     /gene="metF"
                     /locus_tag="RJ272_001026"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HDV7382122.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEIASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4966..5157)
                     /locus_tag="RJ272_001027"
     CDS             complement(4966..5157)
                     /locus_tag="RJ272_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382123.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(5154..5834)
                     /locus_tag="RJ272_001028"
     CDS             complement(5154..5834)
                     /locus_tag="RJ272_001028"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDV7382124.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            complement(5903..7243)
                     /gene="radA"
                     /locus_tag="RJ272_001029"
     CDS             complement(5903..7243)
                     /gene="radA"
                     /locus_tag="RJ272_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDV7382125.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTTKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            complement(7243..8109)
                     /gene="ftsY"
                     /locus_tag="RJ272_001030"
     CDS             complement(7243..8109)
                     /gene="ftsY"
                     /locus_tag="RJ272_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDV7382126.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            complement(8109..8666)
                     /locus_tag="RJ272_001031"
     CDS             complement(8109..8666)
                     /locus_tag="RJ272_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7382127.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISIKKENAVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            8749..9375
                     /locus_tag="RJ272_001032"
     CDS             8749..9375
                     /locus_tag="RJ272_001032"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDV7382128.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            9296..10849
                     /gene="rny"
                     /locus_tag="RJ272_001033"
     CDS             9296..10849
                     /gene="rny"
                     /locus_tag="RJ272_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HDV7382129.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQRHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            10858..>11196
                     /locus_tag="RJ272_001034"
     CDS             10858..>11196
                     /locus_tag="RJ272_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7382130.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIA"
BASE COUNT         4144 a         1851 c         1696 g         3505 t
ORIGIN      
        1 atcttcttat ccttaatttt aatttaagga gcaaaaatga acttacctat acttgattta
       61 caagcttatg aaaaagataa aagcactttt cttaaaaatt taagagaaat tgcttctaaa
      121 ataggttttt tttatcttat caataccagt atagataaaa atttaaacga gaaattattc
      181 aaacttggca aagaattttt taatctttct agaagttcga aagagcttat ttctatggta
      241 cattctcctc aatttagagg ttatactagc gaaggttttg aatacacagc aggatctaag
      301 gattatagag aacaactgga tataggcaca gaaagagatg ctttaaactg gaatttaaac
      361 tcacccttat ggcaaagact agaaggtcct aatctttggc ctagtgaaat tccagaactt
      421 aaaaaaactt tcttaacttg gcacaaacaa accaaaaaag cttgtttaaa gcttttaaaa
      481 gccttcgctc aagctcttga tctacctaac aatgcttttg ataaacttta tggagaaaat
      541 tcttacgaac attgtaaaat catacattat ccaaaaagct caaaaaatat cactcaaggc
      601 gtaggttcac ataaagatgg tgggcttatc acttttgttt ttcaagaaaa acaaagcgga
      661 tttgaagctt ttatagatgg taaatggctt agtatacccc cacttgaaaa tagcgttgta
      721 gttaatatag gagaattttt agaactagct accaatggct atttaaaagc tactattcac
      781 cgcgtgaatt taagcccaaa agaacgcttt agcatagctt attttcttgg agtgcagctt
      841 gataaggata tacctatttt taagttaaat ccagagcttg ctaaagaaag taaaggtgtg
      901 gatactgatc ctaaaaatcc acttttaaga aatgttgcaa gtaattattt taaaagaatg
      961 atacgctctc atcctgatgt ggcaagtatt tatcatagtg acttgataga aaaatttagt
     1021 tttgcgtaaa ggagaaaaaa tgactttatt tactaaagct ttttgcgtcg ctactctttt
     1081 taccggtttt gcatgggcaa atgaagaact taaagttggc tcttctataa cacctcatgc
     1141 agatatttta agatttataa aatcagcact tcaaaaacaa ggttatgatt taaaaattta
     1201 tgaattcaat gatggagtaa tccctaatgt aatggttgaa aatggtgagt tagatgctaa
     1261 ttattttcag catgagcctt atttaaaaga attcaatcaa agacaaggca cccatcttgt
     1321 aaaagttgcc agtatccata tagaacctat ggcagtgtat tctaaaaaac acaaagaatt
     1381 tcaccccaag gaaggacaaa gcatttctat acccaataat cctacaaatg aaagccgtgc
     1441 tttacgcatt gtagcaagca aaggacttat agaagttaag gataatgagc tcatcactcc
     1501 tttagatatc actaaaaatc ctaagaagct taaatttgta gagttaaaag acgctcaact
     1561 tacaaggagt ttagatgatg tagattattc tcttattaat agcaattttg ctattttagc
     1621 aggtttaaac cctgtaaaag atgggcttta tacagaaagt aaatatagtg aatatggcaa
     1681 tatcatcgcc gttaaagaag gtaatgaaaa ccttcctaaa atcaaagccc tagtaaaggc
     1741 cttgcaaagc aatgaagtta aaaaatttat agaagaaaaa tatcagggtg ctttaatccc
     1801 tacattttaa ggagaacaaa tatgaaaaat tcaatcattt cttacccaag aataggtgca
     1861 aatagagaat taaaatttgc tattgaaaaa tactttaaaa accaaagttc taaagaggag
     1921 cttttaaaga gtgctaagga tttaaggatt agacactggc aagaaattca aaaagctggc
     1981 attgatttta tccctagtaa tgatttttca ctttatgata atgtcttaga tgcagctgtg
     2041 ctttttaaca ttgttcatac aaagtataaa aatttaaatt tagatgcttt agatgaatac
     2101 tttgctcaaa gtcgaggtta tcaaggagaa aatggagatg ttacagcctt agcaatgaaa
     2161 aaatggttca atacaaatta ccattatttg gtgcctgagt gcgataatgc tgatattata
     2221 gctttaacag gggataaaat ttttaaagaa tatctcgaag ctaaagagct tggcatagaa
     2281 agcaagcctg ttttaatagg cattttcaca ctttttaagc tcattgcctt taaagatgaa
     2341 aaaactcaaa aactcgccaa agaaaagctt ttaaacgctt acatagagct ttttgataaa
     2401 ctaaatgaac ttaaagtgac atggcttgaa cttgatgagc cttatttggt ttatgattta
     2461 agcaaggaag atatcgcttt gtttgaagaa ttttaccaag aacttttaaa tcacaaaaaa
     2521 gatcttaaaa ttttacttca aagctatttt ggagacttaa gagatattta tcctaaactt
     2581 ttagaaagca aatttgatgc tttgggtctt gattttatcg aaggtaaaca aagcttagcc
     2641 ttagttcaaa aatacggctt tgctaaagat aaaatccttt ttgcaggtct tattaatggc
     2701 aaaaatatct atactaatga ttatgctaaa agcctaaagc ttattaaaga gcttcaaaaa
     2761 tatacacaaa atatcatctt aaacacttct tgctcacttt tacatgtgcc ttatagcact
     2821 gaatttgaaa gcaaattaga ttcaaactat cttaaacttt tttcctttgc caaagaaaaa
     2881 cttcaagaac ttaaagattt aaaagaaatt ctaaattcta gcgaagaaaa tccgctcttt
     2941 agagccaatc aagagctttt taaaaatatc ccagagcgtt tagatgaaaa agtcaaagca
     3001 aggcttaagg ctttaaaaaa agaagatttt accagaacgc ctagttttaa agaacgcgcc
     3061 ttaatccaaa aagaattttt aaaactccct cttttaccaa ccacaaccat aggttcgttt
     3121 cctcaaagtg ctgatgtaag atctaatcgc cttgccttta agcaagaaaa aatttcagct
     3181 caaaactaca ctgaatttaa ccaacaaaaa atcaaagaat gcatacaaat tcaagaagaa
     3241 ataggacttg atgttttagt gcatggagaa tttgaaagaa atgatatggt ggagtatttt
     3301 ggagagaatc taaagggctt tttatttact caaaatggtt gggtgcaaag ctatggcaca
     3361 aggtgcgtta aacctcctgt gatttggggt gatgtatcgc gcataaagcc tatcacctta
     3421 gcttggtcta aatttgcaca aagtttaagt caaaaaatcg taaaaggtat gctaactgga
     3481 cctgtaacca tacttaattg gtcctttcca agagaagaca ttagtctaaa agaaagcact
     3541 gagcaaattg ccttagctat aagagatgaa gtattagatc ttgaaaatgc aggtataaaa
     3601 atcatacaaa ttgatgaagc ggctttgcgt gaaaaactgc ctttaaggaa aagtgattgg
     3661 catagtgagt atttagattg ggctattcct gcttttaatc ttgtgcatag tggggtaaaa
     3721 gctaaaactc aaattcacac tcatatgtgt tatagtgaat ttagcgatat cttaaaagaa
     3781 attgacgcta tggatgctga tgtgatttct tttgaagctt caagatcaaa cttaagtctt
     3841 ttagataccc taaaagctat tcgttttaaa actgaggtgg gaccaggagt ttatgatata
     3901 catagcccta gagttccaag cgtagaagaa ttaagtttaa ctatagaaaa aattttaaac
     3961 aaattaccca aggagcaaat ttggatcaat ccagactgcg gacttaaaac aagagcctat
     4021 gaagaagtta tagcctctct taaaaattta gttacggcta cgcaaaaaat acgagaacaa
     4081 ttataaggag ttttcatgtg tagtttttct tttgaagttt ttccaccaag aaaggatgaa
     4141 aatatcaaaa atcttcatgc tatcttagat gatttagggc aattaagccc taattttatc
     4201 agcgtaacct ttggagctgg aggctctatt aactcacaaa acactttaga aattgcaagc
     4261 ttaatccagg aagaatatca aattcctagc atagtacatt taccttgcat ccattctagt
     4321 aaagaaaaaa tcactcagat acttcaaaaa tgcaaagaaa aaaatcttaa tcaaattctt
     4381 gccctaagag gcgatatatg tgagaattta gaaaaaagca aagatttttc ttatgctagt
     4441 gatttaattt cttttataaa aaaacaagaa tactttgaaa tttatgccgc atgctatccc
     4501 gaaaaacata atgaatctaa aaatttcatc gaggatatac accatcttaa aactaaggta
     4561 aatgcaggaa cagataagct cattactcaa cttttttacg ataatgaaga tttttatact
     4621 tttaaacaaa attgtgcttt agcaggtatt gacataccta tttacgcagg tattatgcct
     4681 attactaaca aaagacaggt tttaaaaatt tctcaacttt gcggagctaa aatccctcct
     4741 aaatttgtta aaattttaga aaaatatgaa aataatactt tggctttaga agatgcaggt
     4801 atcgcgtatg cttgcgatca aattgtcgat ttaatcacaa gtggtgtaga tggaattcat
     4861 ctttatacta tgaataaatc caaagcggct attaaaattt atgaagctgt aaagcatttg
     4921 cttaaagaag agcttcatgc ttagaaaata aactattttt tgcttttatc ttaacttatt
     4981 ttcatttttt agcttatggt tttctataag taaaacaaaa attaaagata aaagcaaacc
     5041 tggtataata cccaagcaaa gatagaaaaa agaattatat ttaaaaaaga agaaaagtgc
     5101 accaaaaagc attaaagcta aagatgcacc tttgaaaaat tctaaaatat agatcaatga
     5161 ccttcctcaa caacagttgc acccgctaaa tatacataag ttaaaatcat aaaaataaaa
     5221 gcttgtaaaa atgccataaa agttaaaagc acataagcag gaagtggagc tatataagga
     5281 actaaagcta aaattaccat caaaaataaa tcgtcacctt taatatttcc aaacaaacgg
     5341 aaggacaaag aaaccacacg agaaagatga gagactatct ctataggaaa catcaaagga
     5401 gctaaaagtt taataggtcc catgaaatga gcaaaatact ttacaaaacc ttgcgcccta
     5461 ataccctcaa aatgataata tacaaaaact ataatagcca aggacaaagt caaatttaaa
     5521 cttgcagttg gagagtgaaa accaggtatt atgcctataa tattactaaa aaacactata
     5581 atccccaaag ttgcaaccaa aggaagatat tttcttgcac ctttttcact tcccatggta
     5641 tctctaccca tagataaaac tccctctaaa aaagcctcgc ctaaattttg cataccgcgt
     5701 ggaacaagtt gcatagaacg agtagccatc atagccacta taacagcaat taaagctacc
     5761 aaacctatgt gaaaaaaata agaaaaagta tgacttgcat caagcaaaga gctaaataaa
     5821 aataaatctt tcatggtttc ctcaaaaatt ttattctaaa ctcggaattt tagcaaaatc
     5881 ttacttatat tttaatgaaa atttacatcc attctaaaac ttgtgaaagt tctttagcaa
     5941 caaaacactt aagccctata tcttccaaag gcttagaagg aacaatggca tttttaaatt
     6001 tttgcatttt agcttctttt aaacgcgtat caaggctaaa aacctctcta atttctccat
     6061 ttaaactaag ctcccctata aaaatactat ctttgctcaa agggcgattt ttaaaacttg
     6121 aaataatagc tgcaaccaca gccaaatccg cagcagtttc acttactttt actccgccgc
     6181 taatatttac aaatacatca taatgcccta aaggaatttc aagttttctt tcaagcaaag
     6241 ccaaaagcat atctaagcga tttttttcat accctgtagc gctgcgtttt ggataagaac
     6301 tttcacacac taaagcttga acttctaaaa ccaaagcacg agatccttcc atcacaacac
     6361 ctaaagcact tcctgaaata gcctttccac gagtaaaaaa acgatttgcc aaatcttttg
     6421 cactgatcaa acccttagta gtcatctcaa aaatacctac ttcattcgtt ccaccaaaac
     6481 gatttttaaa gcctcttaaa agtctaattt ctttagtggc atctccttca aaataaagca
     6541 ccacatccac catatgttca agaaccctag gtcctgctat agcaccttct ttagtaatgt
     6601 gccctatgat aaaagtactg atattataag ccttgctaac acgcataagt tcaaaagtaa
     6661 tctcacgcac ctgagtgatg cttcctgctg ctgaagtgac tttatttgaa tatagagttt
     6721 gtatagaatc aatgataaga atactataat cctttttgtg taattcttct aaaatatttt
     6781 caaggcaaag ttcagtaagt aaaaataaat tcggagtatt agcctcaagg cgatcagctc
     6841 ttaatttaat ctgagcttta ctttcttcgc cactgacata aagcactttt ttaccctgtt
     6901 tggctaaatt tgaagcaatt tttaacaaaa gcgtagattt tcccacacct ggacttccgc
     6961 ctataagcac taaagaacct tcaacaagcc ctccgcctaa aaccaaatca agctcattat
     7021 catctgtgct gtatcttgta aaatgttcta attccacatc ttcaatacaa acagcttcac
     7081 ttgttttcat actaacttgc gcaagctctt ttaaaacttt aatttgctca gcttttaatt
     7141 ctacaaaact atcccaagct ccacaatcag gacattttcc aagccatttg ctttgttgat
     7201 ttccacaagc ttgacattca aaaagtgctt tattttttgc cattattcaa aaataggatc
     7261 taataaagta tctaaataag cacttgcatt aaattcttgc aaatccgtca tttgctcacc
     7321 cacgcctaca taaaaaatag gaagctcaag ctctcttgct atactaaaaa gtgcaccccc
     7381 tttagctgtc ccatcaagct ttgtgataat cacaccatca agttttacaa gctcattaaa
     7441 agctttagct tgtaaaattc cagcatttcc ctgtgttcca tctaaaacta aaatttttct
     7501 atggggtgca ccttctaaag ctttgtttga aattctcaca attttttcaa gctcatgggc
     7561 taaatttttt tgattttgca aacgccctgc tgtatcgata ataactctat caaaatcctt
     7621 tgcttttgct ttagaaatgg tatcaaaagc aaccgctgaa ggatcatgcc cttgtgcagt
     7681 taaaactata tctacatcca ctttttgcgc ccaaagtttt aattgttcaa tcgcacctgc
     7741 tctaaaagta tcacacgctc ctaaaatcac tttttgattt tggtttttat ataaataagc
     7801 aagtttggca atacttgttg tttttcctgc tccatttact cctaaaataa gctctacaaa
     7861 aggtttttct tgattggttt cttttttttc ataaagaaaa taagaaccca taacacgctt
     7921 taaatcttct ttttttactt cattttgagg tggtaaataa taaattatct cttcaactat
     7981 ttcataactt acatctgctt caagcaaaat ttcttcaagc aaatctttgg ttatcttttt
     8041 attctctcct ttaatcccaa caatattttc aagagttttt gcaagtcctt ttttaaaaaa
     8101 attaaacatt aaagtatagc cttttgtata tcaatttcta gcatttcttc aggaataagc
     8161 cctaaatact gattaatcaa tttagaatgc ttgttgtaaa gaaacatggt aggaattcca
     8221 tttaccccac ctaaagcttt agctaaaaga tagttatttt caccattagc gactttataa
     8281 gatattttat gctgttctat aaatttttga atctcatcgt tagatttatc ttctaataaa
     8341 accccaacta tattaaaatc attattatac ttttcttgta atttattaag atgagggatt
     8401 tcagcaatgc aaggggtaca ccaagtggta aaaaatacaa acaaagttgc cttatcttca
     8461 tcgttgaaat ttaaaacggc attttctttt ttaattgaaa ttgatcctcc atcaatcaaa
     8521 ttaagtttaa aattcatatc atcactttga tttatacttg cctcggtgct taaatttaca
     8581 tcattttgct gcttttcttt atcattgcta caagcaacaa acaaacaaga tattgccact
     8641 agtaaaagta tttttttaat cttcattatt tatcaatcct ttattcttct ttataaaaat
     8701 gctaaaatta taacatacat aagataatat ttttttaaag gcatattaat ggaaaaaaca
     8761 gattttaggg cattgcaaaa aatacgcctt ttcaaacatt caaaactaaa tttcaaacaa
     8821 gattataaaa tatttaaaga atgtcttaaa ataataaaac tatttaaagc taaaaatatt
     8881 ttaattttta ttcctttgca ttatgaacca aacttaataa aatttcgcca tattcttaat
     8941 aaaaattaca aactttttgt tccatttatg caagataaaa gtttaaaaat tgtaaaatta
     9001 agattgcctt ttattaaaaa aaggtttggg gttttagagc ctatagattc tttttttaaa
     9061 gcaaaaattg atttagctat tgtgcctgta attggcgtcg ataaaaattt aaaaagaata
     9121 ggacatgggc aaggttttta tgatagattt tttgaaaatt taaattacaa acctcatata
     9181 atatttgtcc aaagtataga tgctttaagt caaaataatc taacacaaaa gcatgatatt
     9241 tcaggaaaat tatacataaa cccttataaa aaatattaca agaaagaaag aaaaaatgat
     9301 agaatcactt atcgcactta tagccgctat agtcggactc ggtataggat atttagttgc
     9361 aaaaaaaatc aatgatgcca aatatgaaat tttcgtagaa caagccaaag ctaaagccaa
     9421 agctatagaa tacgaagcgg agcttatttt aaaagatgca aaaaattcaa ttcttaatgc
     9481 agaattagaa gttaaaaaaa aatacgaaga aaaaactcac aaaattcaaa aagattttaa
     9541 tcaaaaattt gatgatcttt ctaaaaaaga acaaaaactt cagcaagaag aagaaaaact
     9601 aaaagaagat aaagaatacc tttgcaagtc acaaagacac attcaaaact tacaatctga
     9661 tgttgataaa ttaaaaaata aatatcaaga aaaacttgac gatgttttaa aaattttaga
     9721 acattcgaca ggacttacac aaaatgaagc caaagaaatc attcttaaaa aagtagaaga
     9781 aaattctcgc gagcaaattg cacatatagt aagaaaatat gaagaagaag caaaaaatga
     9841 agctaaaaga aaagctaatt tcatcattgc tcaagctact tctcgttttg caggtgaatt
     9901 tgcagctgaa agacttatca atgttattaa cattaaaaac gatgaactta aaggacgtat
     9961 cattggtaaa gaagggcgca atgttaaaac cttggaaatg gttttaggtg ttgatattat
    10021 catcgatgat acaccaggtg ctattatagt aagttgtttt aatctttatc gccgtgctat
    10081 tgctacaaaa gttatagaac ttttagttga agatggcaga attcaacccg cgcgcataga
    10141 agaaattcac gaaaaagtgt gtaaagaatt tgatagtgcc attctagaag aaggcgaaac
    10201 catagttatg gatctaggtt taaataaaat acaccctgaa attgtaaaac tcataggaaa
    10261 actcaaatac cgagcaagct atggacaaaa cgctttagca cattctttgg aagtggctca
    10321 ccttgcagga atcattgctg ctgagtgtgg tggagatgag aatttagcac gtcgtgcggg
    10381 aattttacat gatataggaa aagcattaac ccatgatttt gaaggatctc atgtggattt
    10441 aggtgcagaa ctttgcaaac gctacaaaga gcatcctgta gtaatcaatg ctatttacgc
    10501 acatcatgga cacgaagaag ctacaagcat agaatcagca gctgtttgtg cagcagatac
    10561 tttaagtgct gcacgacctg gagctagaag agaagtgtta gaagctttct taaaaagagt
    10621 cagtgagcta gaagatatcg ctaaaagtaa agaaggaatt aaaaatgcct atgcaatcaa
    10681 tgccggaaga gaaattcgcg tcatagccaa tgctcagctt gttaatgatg atgaaagtgt
    10741 acttttagct aaggaaatag cagctgaaat tcaagaaaaa atgcaatatc ctggtgaaat
    10801 taaagtcaat gttatacgtg aacttagagc tgtagaatac gctaaataag gtttattatg
    10861 caagatatga ttgatacttt aataaaatat ggttatattg ttttattctt ttactcttta
    10921 ggaggtggaa tggttggaat tttagctgca ggagttttaa gttctcaagg aaaaatggat
    10981 cttagttttt gcattgctct tgcttttatt gctaatacca taggttcaac tttgcttttt
    11041 atacttggaa aatattataa aaaagacatt atgccttatt ttaaaaaaca ccgacgcaag
    11101 atagcccttg ctatgataaa aacaaaacaa catggaatta ttttacttgt aactcaaaaa
    11161 tttatttatg gtttaaaaac ttttattccc atagct
//
LOCUS       DAPIWV010000054        11042 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.055, whole genome shotgun sequence.
ACCESSION   DAPIWV010000054 DAPIWV010000000
VERSION     DAPIWV010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11042
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.055"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..696)
                     /locus_tag="RJ272_001035"
     CDS             complement(<1..696)
                     /locus_tag="RJ272_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7382131.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNQFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     RDENLCFVGEVKFK"
     gene            732..2006
                     /locus_tag="RJ272_001036"
     CDS             732..2006
                     /locus_tag="RJ272_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDV7382132.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEES
                     LEEGGTPGILQLIRASLAFKIKDSIGVKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLDLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(2003..2827)
                     /gene="purU"
                     /locus_tag="RJ272_001037"
     CDS             complement(2003..2827)
                     /gene="purU"
                     /locus_tag="RJ272_001037"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDV7382133.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLVFEDRIFIHNNKTIIF"
     gene            complement(2824..3942)
                     /locus_tag="RJ272_001038"
     CDS             complement(2824..3942)
                     /locus_tag="RJ272_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HDV7382134.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(3911..4402)
                     /locus_tag="RJ272_001039"
     CDS             complement(3911..4402)
                     /locus_tag="RJ272_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HDV7382135.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(4399..4647)
                     /locus_tag="RJ272_001040"
     CDS             complement(4399..4647)
                     /locus_tag="RJ272_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDV7382136.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(4726..4899)
                     /gene="tatA2"
                     /locus_tag="RJ272_001041"
     CDS             complement(4726..4899)
                     /gene="tatA2"
                     /locus_tag="RJ272_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HDV7382137.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(4909..5247)
                     /locus_tag="RJ272_001042"
     CDS             complement(4909..5247)
                     /locus_tag="RJ272_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDV7382138.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(5240..6154)
                     /locus_tag="RJ272_001043"
     CDS             complement(5240..6154)
                     /locus_tag="RJ272_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HDV7382139.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(6159..6683)
                     /locus_tag="RJ272_001044"
     CDS             complement(6159..6683)
                     /locus_tag="RJ272_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDV7382140.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVENSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(6680..7462)
                     /gene="napH"
                     /locus_tag="RJ272_001045"
     CDS             complement(6680..7462)
                     /gene="napH"
                     /locus_tag="RJ272_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDV7382141.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(7459..8199)
                     /gene="napG"
                     /locus_tag="RJ272_001046"
     CDS             complement(7459..8199)
                     /gene="napG"
                     /locus_tag="RJ272_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDV7382142.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLTLKADDNYTLRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(8217..10991)
                     /gene="napA"
                     /locus_tag="RJ272_001047"
     CDS             complement(8217..10991)
                     /gene="napA"
                     /locus_tag="RJ272_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HDV7382143.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
BASE COUNT         3728 a         2076 c         1349 g         3889 t
ORIGIN      
        1 tttaaattta acttctccga caaaacacaa attttcatct cgataataaa gatcaagttc
       61 taaattctta tcccagtaac tttgcactcc attgatattg aattttttct caagcaattc
      121 tctagaaagc tgttcaaaac aaaaactttg ataaagttca aatttttctt taatgcattc
      181 taaaacttct ttataacgat tttgcaaaat aagcttttca ttgggcttta aaaaataaaa
      241 aaagaaacga gtaaattggt tgctaaatat aatcttatct tggacaacat aagatcttag
      301 ttcttttttg attttttgtc ttttatcttt tattttttta gcttccttac tatactcaag
      361 ttttattata cctgtttcta aaagatattt aagtgtagat aaagctttaa aatgctgaat
      421 ttttctattg atagaaaaac gcttgcgatt gtttttagct agtaaagtaa gagcgtaaga
      481 acttgtttca tccaaggcga aataactttt aatttttaga taatcatcaa gcaaaattcg
      541 ctctatattt gtaaacacat cgtcttcaaa atttaaaatg tttaattttt caaaaccttc
      601 aaacacacta taaaaatcaa aaagcttact taaagacaaa ttcttatgca aatctacaaa
      661 gttcttaaat tttatatttt tccttttata aagcattttt atagtataat tttagcaaat
      721 ttttataagg attgtatttg caaatttcag atttaaaaaa agaattgatc ttaaaaaaag
      781 gtattttgca ttttgacttc acagcaagtg ctttagctct aaaatgtgta gaaaaagaaa
      841 tttcaaaaat tctcccaacc tatgcaaaca cacattctga tagctcttta aattctttta
      901 aaactcaaca aatttacgaa caagcaagaa aagatataaa aaaaagttta tcattagatg
      961 aaaattttgc ccttatagcc tgcggaacag gatcaagcag tgctattaaa aaatttcaag
     1021 aattgatcgg catttacatt ccccctcttg taaaagaaag atattttacg caaattgata
     1081 aaaatacctt acctttagtt atcgtagggc cttatgagca tcattctaat gaactttcat
     1141 ttcgagaagg cttgtgcgaa tgtattagaa ttcccttgga taaaaatggg gaaattgatt
     1201 ttgattttct agaaaaaact ttacaaaaaa acaaaaaaag aaaaataatc gctagctttt
     1261 ctttagcttc aaatgttact gggatattaa gtgattacaa acgcatttct gaaatggttc
     1321 gtaaatttaa agggatagtt gcttttgatg catctagttt cattccctat aaaaacatat
     1381 cttgtcaata ctatgatgcg ttgtttataa gttctcataa attaatcggt ggtattggcg
     1441 gttctggact tttagctatc aaaaaagatc tttgtggaaa caagcctagc tttgcagcag
     1501 gtggaactgt gggctatgtt tctcgcactt cacaatacta cctttgtaat gaagaatctt
     1561 tagaggaagg aggaacacct ggaattttac aactcattcg cgctagctta gcttttaaaa
     1621 tcaaagattc tataggggtt aaaaatatag aaaaaaaaga agaaatttta aaagattatt
     1681 tttttgaaaa actaaaaact atacctaatt taattttata cgcaaagaat ttaaaaaccc
     1741 gattgcctat ttttgctttc aatatcaaag gaatttctcc ttttgatatc gcttacgaac
     1801 ttagtaaaaa ataccacata gaaacacgcg ctggatgtgc ttgtgctggg ccttatggtc
     1861 atgatttgct agacttaaaa gataatcaaa aacttaaaac aaaaccaggc tggttaagaa
     1921 taagcttgca ttatacgcat gaaaaagaag atattgatta tttttttaat gctttaaata
     1981 aaactatagt aaaattatcg cattaaaata ttatagtttt attattatgt ataaaaattc
     2041 tatcttcaaa aaccaaatca agtgcttttg aaagaacatc tttttctata tttctacctg
     2101 cttgttgcat atcttgccaa gtaaattcat ggtttacagg cgaaacagct tgagtgataa
     2161 taggaccttc atcaagatta ttatttacaa aatgtgccgt agctccaatt attttaaccc
     2221 ctctttcaaa ggcttgttta taaggatttg ctcctataaa tgcaggtaaa aaagaatggt
     2281 gaatatttat aatcttgcct tcaaaatgcc taacaaaatc aggagataaa attcgcatat
     2341 attttgctaa aaccaaataa tcaaatttat attgttcaag acattttaaa atctgatttt
     2401 cttgctcttt acgatctaaa ttttcagcgc tgataaaatg ataaggaatt tcaaatttct
     2461 caactaaatc ctttaaagag ttgtgatttg aaatcacagc tttgatattt gcttcaagtt
     2521 cgttactata atgctttatt agcaaatctc ccaaacaatg actttcttta gtagcaaaaa
     2581 caacgatatc tttttttctc ttctcgcaaa gctctatcaa ggcttcttgt ccaagcatag
     2641 cctcaagcgt tcctataaaa gcttctttat caaactcacc ttctaaaaga gcacgaaaaa
     2701 aaaacattcc ttcgcctaca aattcatcgt tttttactat attgatatga tatttaaaaa
     2761 taacatcaga aattctatag attaaacctt tttgatcttt ggtgcaaatt tttaatacag
     2821 aaatcattta gctaaacctt ttatatattc ttttaattca ttctctcttg cttcttgaag
     2881 ctttaagcca agaattttac cacaaaatcc agcatttatg aaatcttttg ctaaaatttt
     2941 actttcaaac ttattctcat aaagccctaa tcttttagct tgctcaatac gctttttact
     3001 ccaaagtcca agccatttct tcaaaggcat ttcaaaagca atttttgcta gctcaaaatc
     3061 acttatatca tcaagataaa aagcttgatt tgcgtatttt aggtattctt tttgaagttt
     3121 ggttctttta aaaaatatat ctttttctaa attaaaaaaa ttcaaataca aatacaagaa
     3181 taaagcatcg ctttttacaa attctctact ttgtctgagc aaattttgaa attccaaact
     3241 cttaaaaata ctctcaaagc cgaaaatctg tttttctaag tcaagttctt gcaaatatct
     3301 atagccaaca tcaagtctag ggcttttaaa gaatttataa agctccgcat tgatcctatc
     3361 tttgctaaga tcagttatat ccatactttg catcaatttc aagctttcgc tagttatctt
     3421 aaagttaaac cttgaagcaa atactaccgc tcttaatact cttaaactat cctcttgaaa
     3481 gctttgttta tcaatatgcc ttaaaaagcc tgctcctaga tcttttaatc ctccataaaa
     3541 atctaaaaac tcatcgttaa aaagattaat catcatagaa tttatggtaa aatcgcgtct
     3601 tttggcgcca agtttttcat cattacaaat ttgaacttca aaacctttat gtccatagct
     3661 tattttattt tcggttctag caagagctaa atcataattt ttaaacttat acacaaaaaa
     3721 actttttcca aagccttgtg cgcccaattt ttgcataatc ttttcaaaat ctttaggttt
     3781 tatatcataa agctctatat catagtcaca aatttttaag cctaaaaaca aatccctaac
     3841 gctacctcca accaaatacg ctcgtttggt ataaggcttt aaaaactcag caataaactg
     3901 taaatcggga ttatttttta agcttatctt cgatatttgc aagtaaaaac tctaaaaaat
     3961 ttatggtcaa gtttaaccta ttttcaagat catctttttt tatgctattt aaaccttcaa
     4021 aaagaactaa aattctctct ctaagatgtt ttaaaaaaat atcctcatta agcgtttgaa
     4081 cctctgtcat aacactagga tttaaaattt cactttgtaa aaaaggctct tcttttttaa
     4141 actctttatt ttcctgagta gaaatttcaa tattattttg tattttttgc tcttcttcaa
     4201 attttgccat agaaatttta tcttctaagt cttgcggagt atcaagctct tcgcatacaa
     4261 actccatagg tggtaattca tcttttattt cagtttttct atttaattct tgttctttta
     4321 aaatttcatt ttgtcttctt tgctcttcca tgatagagct aacttcgcta atggtttttt
     4381 tagctaaatc ttccaaattc atatttttat caaccacctt ttaaattcat taatttcttc
     4441 atcgcttttc atattaataa aaaaatccaa catttgagtg tttaagtctt tatgcttgga
     4501 tctaaaacca ctaagacgac gaaccgcatc gatagcgttt tgattatccg gatcttcttt
     4561 taagatattt ttataaattt ctaaagcttc gtcttttaac ccttgagcct catagataga
     4621 agcttcagtg actgtatttt tcatcactgt ttcctaaaat ttttctttaa ttctagcaaa
     4681 aagcttttta atttatcttt aagaaaataa gatgtttttt aatgtctatt ttgttttaaa
     4741 cagtttttct atatattctt ttttttcttt ctctaaacta gaatttaatt ctttttgttc
     4801 ttttttaact tgcgctttta aatcttgatt tttaaaatac acataatcaa ttccaaaaat
     4861 aacaccaatt ataataagca atgggattaa aaataccatc tttacacttt aagaaaattg
     4921 attaaataca ctaccatagt agcgaacatt ctcagcattt tcattttttt ctatcgtttc
     4981 tattgcacca ctattgattg ctttttggat atcatcattt aaatcttgat aagaaaaaac
     5041 catattaata ctgataatat ttggcaattt ctcaagcatt ttataagagt ttaactcatc
     5101 ttctaaattt tcactttcaa tcacaactat aatcttttca ttttcacaaa gttctacaga
     5161 acaaaaagga atttcagata tagccttttt taaatcattt atatattctt cttttgctaa
     5221 aatcaaaaca ctagaaagat tattcatcaa tactcctaaa cattatacta tcaccaaagc
     5281 ctgaaacgat aaaatcttta ttgtttaaaa aaataataaa ctcactcatc aaattttcat
     5341 tattaaaagt tttaacaggc ttaaaatcac ttgtgctaaa aacttcacta actccagctt
     5401 cattatcgct ataaacagcg aattctccac taggacttaa agcacaagta tatatcaaaa
     5461 aatctttttg caaaaaattt tgctcttcat tttttacaac tcctatacgc ctatccgttc
     5521 cacaacttaa aataacatta tttttaaaat ctacttgata gatattatct ttatgcattt
     5581 tatcatagtt ttttaacatc ttccaatttt tcaaatcaaa aagttctact tcgccactct
     5641 caaaacctgc aactagtcta ctcttatctt catttaaaac tgcatcatta agactagaat
     5701 gggaaaaatt aaattttttt atatttttta aacttttatc aatcaattct atttcagaac
     5761 caatagaaat caaaagataa gtgttttcat tgataaaaaa tgcttttatt atgctatttt
     5821 cttcgagctt tttgatttgt aaattttcct tataaaaact taaattttta gcaccaaaat
     5881 caccctcgct aagtattaaa agtgtatgtt taaaaacatc aatgttataa atcttagcaa
     5941 aatcatcacc ataataattt ttaatctttg gtaaagataa aagttctttt aaacttttat
     6001 ctttaatgtt atattgtaaa atttcacctt tatcagtgcc tatatataag ttttgcttat
     6061 caagctttaa agctgttata ttagcattta atttcagctc ataagcataa gacaaaacac
     6121 aaaaaagact caaaataaaa agaaattttt tcatttattt actttacacc ctcattaatc
     6181 acatcaatta aatttgaacg actttttaat tgttcatttt taaattcagg tttaaagcta
     6241 ttttccacta aaggttttgc atcactttgt ggaacatgac actgagtgca attaaaacga
     6301 ctatcgctaa tcatatctcc tgtggtttta ttgtgtctaa aatcataata atgactagca
     6361 ggaagtggag ttgcaccagc atctgctgct atagccttat catggcagct taagcacata
     6421 ttgttatctt tagttatagg taacaaatct tcaatagcat gcggaattaa cggtggtgca
     6481 ttttcataag aacgctcaaa acgagtagat tccccaggct gtaaagttgt gaaatttgcc
     6541 tccactaaat ttactttatt ttcattttct aaacttgctt ttctaagtcc aatttgttct
     6601 gaacttaccc cactattcat tgcacaagcg gcaaaaaata ccactgcagc acttcctaat
     6661 aaaaccaatt tcttcttcat tatttattcc ttaaatcaaa aatattaaaa ttcaaagcat
     6721 catcattaca aacttctata catcttgcac accttataca ctctcccgat ttcacgctag
     6781 tactttcttt tccaaccatc cacaaaacct gtttttcagg acaaatacgg atacattcat
     6841 aacatttagt gcatttatca ctatcatgct ttattttaag caaagcaaaa cgagaaataa
     6901 aagcataaaa agctcctagt ggacaaaaat gtgaacaaat tgccctagga cttaaaaaag
     6961 tatcgataca aaaaagtata aaggctacaa aaatccaaga acttgtagca aaaataatcc
     7021 ctctatgtat cattcctata taagaaaaac tttcaaacac aggcaatgaa aatacaaaag
     7081 aaaggactaa aaccaagacc aatacaaaat agcgtaaatt tttaggcaaa attaaaaatt
     7141 tattattaag ggttaattta tttcgcacaa aagcagcaaa atctgtgatt aaattaacag
     7201 gacaaaccca agagcaaaaa acccttccta aaagcaaacc atagataaaa aatataatca
     7261 aagctcctat taaagccatt aaatctatac tccagcttgc tagaatgatt tgcaaaactg
     7321 caaaaggatc gcttaaaggt atggtattaa aaagtctaga agaacttaaa tttccctgca
     7381 agataaaatc tgtagcttta aaactaaaaa gcgctaaaat tccaagctga acgatgcgtc
     7441 tagcaattaa atacttcatc acagttctcc atcatttaaa taattggttg cttttttaac
     7501 attaaaatgt tttgaagtat ctgcattttt tatacgacct tcatcttttt catcccagcc
     7561 ttttacataa tgagatcctg cttttcccaa tacatactcc cttggcaaaa cacgaatggc
     7621 cggtttttca gtaatacaag ccagttcaca aagcccacaa cctacacaca cttcatgatc
     7681 cacactaggt agtaaaaaag catgtttggc ggtgcgttca ttgcgtttaa gctcaagttt
     7741 taaagcccta tctatcaaag gacaggctct ataacaagca tcacattgaa ttccccagtg
     7801 tgccacacaa gaagcactat caacaatagc aatacccatt ttcaaagatt ctataccctg
     7861 ctctaaatgc tttttatcta aagcatcagt tggacattct ctaatgcaag gaatatcctt
     7921 acaaagatag caaggaattt ctcttgcctt aaaaaaaggc gtgccatttt ttggactatc
     7981 taacaagcta gcaagcttta aagtatcata aggacaggct tttacacaaa gcccacaacg
     8041 aatacatttg cttaaaaatc tagcttcatc ttcagcccca ggaggacgca aggtataatt
     8101 atcatcggct tttaaagtca aattagccaa aaatccacct cctgtacata aacatgcagc
     8161 cttaaaagca ctaacaaaaa attctcttct acctttcatt taatcaaaac cctaaattaa
     8221 gccttataaa tttttacagc gcatttttta aagtcagttt gttttgaaag tggacaagtc
     8281 gcatccaaag taactttatt gatatataca ttctcatcaa accacggcac atacacaagt
     8341 cctacaggcg gtttgtttct tccacgcata tctactcttg cttttacttt accacgacga
     8401 gattccaccc aaaccaaatc accttgattt aagcctaatt tctctccatc tttctcactc
     8461 atatagcaaa gtgcttcagg cacagcacgg taaagctcag gcacacgcat agtcatagtt
     8521 ccactatgcc aatgctctaa aacccttcct gttgcaagcc agaacggata ctctttactt
     8581 ggtctttcag gtgctttcat aaatggccta aagaaaattt tagccttatt tttaatactg
     8641 tgctcttttt catctttagg agctattaaa tccccatttg taagcatttt gttaaaatca
     8701 ccataaaaag caaaatctga atttggagcc gcttttttag cataataatc aaatttagta
     8761 ttaaatctcc actgtgtttc cttgccatta accacaggcc atcttaaacc ccttacttta
     8821 tgataggtat caaaatccgc taaatcatgt ccgtgtccta agccaaattt acgatattct
     8881 tcccaaagat atttttgaac gaaaaagcca tagcctgtaa attcttttcc atcactgcct
     8941 tgaatttttc tctcatcacc tttaacatcg gtattatcaa agccttttgc gatggcatcg
     9001 tttggattaa agctttttgc ttctttattg gcaaatagta catcaaaaag tgtatcatct
     9061 tcgctataac ccatagcttt tgcctcttct aaaacacttg gcaaggtaag cttattatcc
     9121 actttttgct ctttccaaac ttctttaagc ttaaagcgtt ttgcaaattc taaaatttgc
     9181 caagtatcac tcatggcagc acccacaggt aagacttgtt gtttccaatg ttgagttctt
     9241 ctttcagcat taccataagc accccatttt tcataaatca tagcacttgg taaaataaga
     9301 tcagctactt ttgctgaaat tccaggataa caatcactta caacaataaa attatccatt
     9361 tctcttgctg ctgcaatcca gtgatttgca tttgcagtgt tttgccatgg attattcact
     9421 tgcacccatg caaatttaat ttttccatct tctaaatctc tcatgatatt aagataagga
     9481 gaacctggtt ttgggttgat agtctttgca ggaactttcc aaattttttc agaaatttct
     9541 ctgtgttttg gattggctac aaccatatct gcaggcaaac gatgtgagaa agttcctact
     9601 tccctagctg ttccacaggc acttggctgt cctgttaaag aaaaggctcc actacctggt
     9661 ttagcttgct ttcctagcaa aaaatgtacc atataagctt gttcatttac ccaagaacct
     9721 cttgtgtgtt gattaaagcc catagtccaa aaacttacga ctttgcgatt tttctctatg
     9781 taaagattag ctaattcttg aagttttttc ttaaaatctt ccaaagactc attatcatca
     9841 cctttggcta ctcttgcagt gtattctaaa gtataagggg ctaaaccttt tttaaattcg
     9901 tcaaaagaaa tttcccagtt tttatcagcc acaccttgat gtttcatttc aaatttatca
     9961 cccgctttaa cgccaagata agataaagaa gtagcctctt catcgtctaa agtgattaca
    10021 ttttcttttt caaccgtatc tttttcactt tctttaaatt ttggatgatt tggattattt
    10081 ctcataccat aaccaatatc agcataacca gttgcaaata cgcagtgatc tttgataaat
    10141 ttcatatcca tagcctctgg atgattataa acaatctctc ttgctatgta gttccaaata
    10201 gccaaatctg tatttggttt aaaaataatt tcaatatcag caatatttga agtacggtta
    10261 gaaaaagtgc ttagattaac aactttaacc ttatcaagat tgcttagttt tctatcactt
    10321 actcttgacc aaaggattgg gtgcatttca gccatattag ctccccaagt gataatagta
    10381 tctgtaagct ctatatcatc ataacagcct gatggctcat ctacaccaaa agtttgcata
    10441 aaaccaacca ctgcagaggc catacaatgt cttgcatttg gatcgatatt atttgttcta
    10501 aaacccgctt ttgcaagctt taaagcagca taaccttctt ggatagtgta ttgcccacta
    10561 ccaaaaatcc ctatacctgt aacgccgagt tcattgtagg cttttttaaa ttgtttttcc
    10621 atttcatcaa aggctctttg ccaagaaact tgttgaaatt tgcctttttt atcaaattcg
    10681 cctttttcat tcatgcgaag caaaggcata acaagacgat cttcaccata catgatctta
    10741 gcattaaaat aacctttgat acaattaagt ccgcgattta cgggtgctgc aggatcacct
    10801 tttgttgcta cgattttgcc atcttttcta gctatcataa ttccacagcc agttccacaa
    10861 aatctacaaa cagctttatc ccatttccaa tcttcttctt gcgcgccaag catagagctt
    10921 ggaacactaa gccctgcaac actagcagca cttgcaatag cggtattttt aataaaatcc
    10981 cttctattca tccttattcc tccaaaataa aaaaatcatc ttattataaa aaatgaagta
    11041 ta
//
LOCUS       DAPIWV010000055        10956 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.056, whole genome shotgun sequence.
ACCESSION   DAPIWV010000055 DAPIWV010000000
VERSION     DAPIWV010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10956
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.056"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(25..681)
                     /locus_tag="RJ272_001048"
     CDS             complement(25..681)
                     /locus_tag="RJ272_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDV7382144.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYSFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            complement(674..2113)
                     /locus_tag="RJ272_001049"
     CDS             complement(674..2113)
                     /locus_tag="RJ272_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDV7382145.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKIMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2110..2850)
                     /locus_tag="RJ272_001050"
     CDS             complement(2110..2850)
                     /locus_tag="RJ272_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7382146.1"
                     /translation="MMKKVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGVPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGGRL"
     gene            complement(2974..4656)
                     /locus_tag="RJ272_001051"
     CDS             complement(2974..4656)
                     /locus_tag="RJ272_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDV7382147.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4828..5397)
                     /gene="cdtC"
                     /locus_tag="RJ272_001052"
     CDS             complement(4828..5397)
                     /gene="cdtC"
                     /locus_tag="RJ272_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HDV7382148.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5408..6205)
                     /gene="cdtB"
                     /locus_tag="RJ272_001053"
     CDS             complement(5408..6205)
                     /gene="cdtB"
                     /locus_tag="RJ272_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HDV7382149.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6202..7008)
                     /gene="cdtA"
                     /locus_tag="RJ272_001054"
     CDS             complement(6202..7008)
                     /gene="cdtA"
                     /locus_tag="RJ272_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HDV7382150.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAANGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTLECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            7121..7354
                     /locus_tag="RJ272_001055"
     CDS             7121..7354
                     /locus_tag="RJ272_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HDV7382151.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            7355..8917
                     /locus_tag="RJ272_001056"
     CDS             7355..8917
                     /locus_tag="RJ272_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDV7382152.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQTLKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            8917..10041
                     /gene="cydB"
                     /locus_tag="RJ272_001057"
     CDS             8917..10041
                     /gene="cydB"
                     /locus_tag="RJ272_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDV7382153.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFL
                     PFFLGFLVWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(10235..10930)
                     /locus_tag="RJ272_001058"
     CDS             complement(10235..10930)
                     /locus_tag="RJ272_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDV7382154.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKVLIEENISVIIPSDEDIKIVNDII
                     FNELCKGEIKQESKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
BASE COUNT         3506 a         1782 c         1762 g         3906 t
ORIGIN      
        1 agacttactg attctagtat agaatcagta aataataata tgtgcaattt gtggcccatg
       61 aacaccaaaa acagtgataa gttctatatc tgctgttctt gaaggccctg ctataaataa
      121 gatattagta ggtaaaattt cattttcttt ttttactaaa tttaaagctt cgctaagact
      181 tttaacaaca ttttcttttt taagcaatac tatgcaaagt ttaggtgcaa ggcttagcat
      241 tctaggttgg gttttacttg aaggtataag tgcaactccg tgagagctta cccctgctct
      301 tgcgtgaatg atggaaaaat cactatgaaa aacttcagat cttaaatttt cgatttcttt
      361 atcaaagcaa atcttttttt ctgctttgat ttgttctaaa tttaaattta aatccgctcc
      421 ataaatcata cttttaaagc tatattttgc gacaatttca ttgatttttt cttctaaggt
      481 atcttttgta gcattttcaa cgatgtattt gttatcgctc attttttgct tcatttctgt
      541 aagcatatct tgggttgtct ggatatgttc tacaggatct atactttcaa tgcgtgtgaa
      601 agttgtttct ttgtaagctt ttttaagatg ttctaaaata tttgctttgc ttttgcttga
      661 aatttcatcg attttactca tagcttactc cttctagttt ttgcacttct ttataaagat
      721 ccattttaat ttgaggtaat tctttaaaag cgtaccattt tttaatcaca ggcaaaatgc
      781 ttgcgaaatt ttgtaccgtc cagttgaaat aatgtgcttt tgaaagtgaa aaacgccatt
      841 tatcgccatt ggttgcgata tttttaaatt gtttaaaagc aaaggcttct agggcattgt
      901 gatgaacatt gtttgctcct aaaggtggat ttttaccttg tcctatttta tcacatctta
      961 atttgcgaat aagatcagcc aaaggaattt ggactggaca aacttcagaa caacgcccac
     1021 aaagtgaaca gaaattcaaa atatctcctg tatgatctat accaaaaata ttaggactga
     1081 ttacttctcc tataggtcct ggataagtgg tttgataagc atgtccgccg atttgatcat
     1141 aaacagggca aaaattcata caagccccgc atcgaataca acgcaaagcc tcataataat
     1201 cctcatgagc taacatttta gagcgattgt gatcaaataa aatcacatgt acttctttag
     1261 gaccatctaa atctccattt tttctaggac ctgtaatgat attgttataa gttggtataa
     1321 attgtcctgt ggctgaagga gtaagtaaag aaaccatagt agccgcatct tcaaagcttt
     1381 ccatgatttt ttctatacca caaagtgcga tatgaatatc aggtgctgta gtgcacattc
     1441 taccatttcc ttcattttct ataagccaaa aagctccttc tcttgacatg gcaaaattga
     1501 ccccactaag tccaagtttt aagccttcaa aatcttttct taaatgttct ctagccaccg
     1561 catttaaact ttcgggttca tcgttttcta aatttgctcc taatttttct ttgaaaattt
     1621 ctccgatttc atggcggttt ctatgtatgg caggtacaac tatgtgtaaa gggggttctt
     1681 cattaagctg taaaataagc tctccaagat cggtttctat agcttttaaa cctttttttt
     1741 ctaggtagtg atttaggcct atttcttcac ttgccataga tttacctttt aaaagcttgg
     1801 tgatattttt ttctttcatg atttcataga cgatttcaca ggcatcttca tcactacttg
     1861 cccaatgcac cttaatgcca ttttttgtag catttttttc aaattctaaa agtctttctt
     1921 ctaagctcat taaggcatta tttttagctt gcttagcttt agctcttaag ccctgccagt
     1981 ctttaaatct agcatcaata acattgagtc tatttttttg caaagtatgc atggcagtca
     2041 ttaaattttc ttgcatttgt ttgtcattga gtttaatttg aacgatttgt tcgtgaggaa
     2101 ttttttgact catagtctcc ctccttctaa gcgtttaagt aaaaagtcat ataaatgtat
     2161 gccttttata tccaaaccca ttcttttcat tgtgccatct atatttaaaa gacaacctcc
     2221 atcaccactg atgagatatt ttgcaccgct attttgtata tctttgattt tgcttcttac
     2281 catagcattt gaaatttcag gctcttttac tgaaaaggtt cctccaaaac cacagcattc
     2341 ttcttcgtat tgaagttcta ctaattctac gttttttagt tttttgataa gatttttact
     2401 cgcttgtatg cttttttgca ctcttaaagc atggcaatta gaatgccaag ttacttttat
     2461 aggtacacct ttatcttcat aatctacttt taaaacttca tcaaggtatt gtgaaagttc
     2521 tatcactcta gagctaaaag tttttatttt ggaaaattca ggcctgtttt taaaaagctc
     2581 tttatagtca tgactcatca tacccgcaca agaaccactg ggtacaacga tgggataatc
     2641 tttatcaaat aaatctacat tatataaagc gatctcacga ctttcatcga aataacctga
     2701 gttaaaagaa ggttgggcgc aacaggtttg attttttttg aaaatcactt caataccctc
     2761 acgccttaaa agttttatcg catttaaaac gctttgttgc atagcagtac ttcctaagca
     2821 tgtggcgtaa aaatacactt ttttcatcat ttttctcctt ttaggataat ttaggataaa
     2881 tgttctaatc ctgtaaaaat aaaagcaaag taaaatttct aacaaatatt ctaaaaacga
     2941 atatttgttg aaataaaact taaatttttt taattatttc actataactt cagggatgat
     3001 tccttgtaag aaaaaagcta taatgcaagt ccaaattcct attaaaataa taaaagctac
     3061 agaatatttt aatgtgaatt tgaaaagatc agattctttt cccacaagtc caaccgctgc
     3121 acaagctata gcaatgcttt gtggactgat catcttccca acaaccccac ctactgaatt
     3181 agctgctaaa aataaagctt cgctaatacc tagtttttga gcgcttactt gttgcaaggt
     3241 tccaaaaagt aaattagcac ttgtatcaga gcctgttaaa aataccccta tccagccaat
     3301 gattggtgaa aagaaagaaa aagcatcacc tgtgtgtgca aaagcaagtc ctaaagtagt
     3361 gctcatacca ctatttttag agataaaagc aaaggccaca accaaaccta tggtgataca
     3421 aggtatagcc atttctttta aggtaaccca aaagcattct gcagcatctt cggctttgat
     3481 ttttaaaata gctatagtta aaaaagcggc aagtaaaatc gctgttcctg cttgagctac
     3541 ggtttttcca ttgattaaat ctacacccaa ggccaaagat aaaggcttag cttctcctat
     3601 gcctgtgata gaagggctta aaattccagt tgtgatattg ctaaattgta aagtaatact
     3661 tgtatagctt aaaattccgt ccttatcaaa gagagcttta aaccaaggtt gtgtccaaat
     3721 gataatacaa acaatgagta aaataaaagg tgaccaagct tttaaaattt gattaaaact
     3781 taaggtgtta tcttgagtga aattgctttc attgtcaaat ctaaaaatat tttttggttt
     3841 ccaaaatttc aaaaatacag tcgtaactgc taaagaaacc acagctgaaa taatatcagg
     3901 taattccgct cctaggtgat ttgagcttaa aaattgagta gttgtaaaac ttagcgccgc
     3961 aactaaaata gctggaaaag tttctttaat acctttaaat ccatccatta aaaaaactat
     4021 gaaaaaaggt atagtaaggc ttaaaggaac tagcattcta cctaccatgg cagaaactga
     4081 atgctgttct atgccgacaa gatttgccat agcaataata ggaattccca ccgcaccaaa
     4141 agcaacagga gcggtatttg cgataagaca aagccctgca gcttgtaaag gacgcaagcc
     4201 aagtcctact aaaagtgcag cggttatagc cacagggcca ccaaaaccta tagcaccctc
     4261 taaaaatgaa ccaaaacaaa aacctattaa aatcacttga attctatgat ctggagtaat
     4321 gctcatcacg ctttttttaa tgatttcaaa agaacctgac ttgatagaaa gtttgtaaag
     4381 aaagattgcc gcgatgataa tccaagctat aggccacata ccatttgtaa agccttgaat
     4441 aaaacttgca cccactaaat tccaaggcat tttataggca aataaagcta ctaaagtagc
     4501 aagtataaca gttaaaaaac ctgcttgata gcctttaagt tttaaaacaa ccaaacaaac
     4561 taaaaaacat agtataggta aaaatgccac taaagcactt agccaaatat ttgaaaaagg
     4621 gtcataaatt tgttgccatg ttaaaatttg ttccaatttt tcctccttga taattattat
     4681 gtataaattt attgtaacaa aaaattacat taaaataaaa aaattataga gcaaggtaaa
     4741 ttacattgta ttattattaa ttattttgtg tattttagta atatcataaa tattaaataa
     4801 atataaaaat agaacaagat aaaaatctta ttctaaaggg gtagcagctg ttaaaggtgg
     4861 ggttataatc attagttcat ttacttcagc aaaaaaaata ggatctaggg tgcaaggggc
     4921 tattccaaag cgtttttgta taggaatatt tggattaaaa aaagttacta tacattcatc
     4981 agattccaaa actaaagaac gaatttgcac agctgaagtt gttgttggca ttatagaaaa
     5041 tacagtttct aatttaccat cttttagatc atcttgacaa gattttgctc caaaggttcc
     5101 atcttctaag atggctaaac aaagatcgct ttcttttgga tttgtaaatt gcacataacc
     5161 aaaaggaagt tcatcagcta atttatcttt ttgttttaac tcatcgctta aaacaatttc
     5221 tttaatattc caattttgat caataggatc ttttgaggta tccctaaagg cgcttaaaaa
     5281 aattcccgtt tctaagcttc ttatagaaac catttcggta aaatctttca aatctccagt
     5341 aggagttgca aaggctaaag ttataaacat aaaaaacaaa gtaataattt ttttcatatt
     5401 aaatgtccta aaattttcta aaatttactg gaaaatgatc tgaaactata tgagatctta
     5461 aacttgcaag cattaaaatc gcagctaaaa gcggtggagt ataggtttgt tgtctatttg
     5521 aatttcctgt aattgcataa tcaagagtcc ctccgcttgc ttgagttgcg ctagttggaa
     5581 aaaccactct aattctattt gctaattctc tatccactgt acttgttata gtagaaggat
     5641 cacggttaaa atcccctgct atcatccagt taacttgagg catatttgca aaatgtgcat
     5701 ctacagctgt gataattgct cctacatctg ttcctccatt agctaaagca tggatattga
     5761 aaaaagcatc atttccattg cgaattccta taatgggtct tgaaactgta gtaggtggag
     5821 gtaaaacaat cacttcttca gcttgcattc ttgaaactat agctaaattt acacgattag
     5881 ctcctacatc aacgcgagaa taataaataa aaaccctatc aggccttgaa agagttccta
     5941 aattccactc atattcatca ataggtgttc caccttgttg cacatggcgt cctgttggag
     6001 tggctgttct tggtaaagtt cctgcttctt gtatcattaa gatatctaag gggtttgctc
     6061 cacttacaag ttgtcttaca ctaacactcc atttgctttc tgtggctgcg gatgagcctt
     6121 gcaaattcca agtgccaaca ttaaaatttt ctaaatttgc aaaagcaagg ttaaaagata
     6181 aaaataaaca tataattttt ttcatcgtac ctctccttgg cgatataaag gttttgcggt
     6241 aaaaggcgga gtagttaaaa accattgttg atcaaaatta tctttttttg cacactctag
     6301 ggtaaaaatt ttaaaaacct tgtgaaaatc accataaaga tttgtaatag gtgcttgtat
     6361 gcattttcca tttcctaaat ttttaatttg aaccgctgta ttgctcatag ggataagttt
     6421 ccacatttgt gcgtgattgc ttgcatcaca aggataatgg acaattccat taccataagc
     6481 attaagacaa gtattggttt tggcattttt aatcattgca aaatcattag gataaagcaa
     6541 aagttgccaa actctagcat cgccaaatcc tttgctatcg attaaagtat agccccaaat
     6601 ccaatttcct tgtgctaaag cccaaaccgt taaagctgct ccgctagggc ctaaaatggt
     6661 taaaaaatca gaaaccgcag ggcgattttc aaaaattaaa acatcattaa aagcttcgtc
     6721 tttaaagcga ggattgatcc catttgctgc attattgttg gcactattgc ttgttctagt
     6781 taaaggtggg gtaataggag taataggtac taaatcagca ccgctaatta aacttggaat
     6841 ttcttgattg gtaggaaaag taggttcaag tcctagtttt aaaggatcag tatcttcaaa
     6901 ttctccaaat gaacgcccca aaggatttac attttcaaat ttagaagaac atgcataaag
     6961 aaaaaaagtc ataaaacaac ataaaataaa aactataatt ttttgcatta aaaaccttga
     7021 tatgtattta aatttttaag aaaataataa cataaatttc attataattt tccgcttttt
     7081 aaaaatgttt tattttgttg tttttaaagg tagaatttat atgtatctta aacacttata
     7141 ttttagcatc tctcaaattt ttaattttta caaagaaggt tttaaaaatt taactcttgg
     7201 aaagaccctt tggaaaatta tttttatcaa actttttgtt atgtttgtga ttttaaaact
     7261 ttttgttttt gatgtaaatt ttaattctat ttttaaaagc gacaaagaaa aaagcacttt
     7321 tgtactcaaa aatcttacac tcgaaggaaa ataaatgaac gaacttagta gcgttgattg
     7381 gtcaagagcg cagtttgctt taactgcact ttatcatttt ttgtttgtgc ctttaacctt
     7441 aggcttgtct tttatgatcg ctatcatgga aaccatctat gtaaaaacta aaaatgaaag
     7501 atggaaaaaa atcaccaaat tttggctttc attatttgct ataaattttg ctatcggtgt
     7561 agctacaggc attataatgg aatttgaatt tggaacaaac tgggcaaatt atagctggtt
     7621 tgtgggtgat atttttggtg cacctttggc ggttgaaggt attatggcat tttttttaga
     7681 ggctactttt tttgcagtta tgttttttgg ctgggataaa gtaagcaagg gttttcactt
     7741 actttcaact tggtgtgtgg ctataggaag taatctttct gctttttgga ttttagtggc
     7801 aaatggttgg atgcaatatc ctgtaggaat gagctttaac cctgacacag caagaaatga
     7861 aatgcaaagc ttttttgaag tagcactttc tcctgtagct atttcaaaat ttttacatac
     7921 cataggcagt ggttatgtaa tttcagcttt atttgtaatg ggaatttcag cttggtttat
     7981 gttaaaagga cgccatatta tcgaggctaa aaaaagctta gttgtaggag ctagttttgg
     8041 tttggtttgt tcaatctttt tgtttttcag cggagatgaa agcgcttacc gtgtaactca
     8101 aactcaacct atgaaacttg cagctatgga aggggtttat caaggtgaac atcgtgcagg
     8161 acttgtacct tttggaattt taaatcctaa aaaaaccata gataataacg aaagtgtgtt
     8221 tttatttgac attactatac cttacgctct ttctatatta ggaaaccgtg atccaaattc
     8281 ttttgttcca ggaattgaag atttgatcta tggaaatgaa agcaaaggta tagaacctat
     8341 gcaaaatcgt atcgatagag gaaaaatcgc tatacaaact ctaaaagact ataaacttgc
     8401 taaagaaaac aatgatacaa tagctatggc aaatcacaaa tccattttag aaactcattt
     8461 taaagatttt ggttatggat atttagaaaa accaagcgat actattccac ctgtggcttt
     8521 aactttttat agctttcata tcatggttgc tttaggaagt tttttctttt tacttttcat
     8581 cgttacgctt tatcttacca tggcaaatga tattgagaaa tttagaaaag tactttgggt
     8641 gtgtttgtta tccattccat tgggttatat tgccgctgaa gcaggttgga ttgttgctga
     8701 agtaggcaga caaccttggg caattcaaga cttgcttcct gtacatatcg cagcaacaca
     8761 acttggaaaa gtcaatgttc aaatttcatt ttggattttt gcagtacttt ttacagcatt
     8821 attgattgca gaagttaaaa tcatgcttac tcagattaaa aaaggttttg acgcacatgc
     8881 aggacatact ccacttatgg gcaaaggaga aaaataatgt tttttggttt agaacttgaa
     8941 ggtttgcaaa tttattggtg gttgatttta agtttacttg gtggactttt agtttttatg
     9001 ttttttgttc aaggtggaca gactttaatc gatgagctta gcaaggatga gcttgaaaaa
     9061 actatgctag ttaattcttt agggcgtaaa tgggagcttg gttttacaac tctcgtactt
     9121 tttggcggag cagcttttgc agcttttcca cttttttata gtacaagttt tggcggagct
     9181 tattgggctt ggctttgtat tttattttgt tttattttac aggctgtggc ttatgaatat
     9241 cgcaaaaaag aaaataatgt ttatggctct aaaacctatg aaatttttct taaaattaat
     9301 ggttatttag gtgtgttttt aatcggagtt gcagtaagta gtttttttag cggttctgaa
     9361 tttatcttaa atgagcataa ttttgtttct tggcaaaatc ctttgcacgg cttagaactt
     9421 ttacttaatc cttttaatta tctcttaggc ttagctttag tatttttagc aaggctttta
     9481 ggcgcagcgt attttatgaa caatatcaat gatgagaata tcaaaataag agctatgaaa
     9541 aaactcatgg tcaatagcat tttattttta ccttttttct taggtttttt agtgtggatt
     9601 ttcttaaaag atggttttag tgtagatgca aatggagttg taagcatgag tgcgaatttg
     9661 tatttatata atttcttaaa tcaaatgatt tttgctatct tgcttgttgt tggtgtgatt
     9721 ttagtgcttt taggtatggt tcaaggagca aaaggttgct ctaaagctat ttttacccta
     9781 ggacttggaa cggttttaac agtttttgct ttattatcaa gcattggttt aggtcaaagt
     9841 gctttttacc catctttaag tgatttgcaa agttctttaa ctttaaaaaa tgcaagttca
     9901 agctattata ctctaagcgt catggcttat gtgtctttac ttgtaccttt tgttttagct
     9961 tatattatct atgtttggaa tgcaatggat aaagtaaaaa tcacacgcga agaaatcgca
    10021 aacgatgatc acgcatatta aggagaaaaa atgttacatg ctttgttttt attggcttgg
    10081 cctttagtaa tttatctaag ctataaattt atcatgctaa atatcaatca attagaaaaa
    10141 gatagcaaac tataaagcaa gataagattt aaaccgatat aagtataaat cttttcaaaa
    10201 tattgcaatt tgcccatttt tgggcatctt ttaattataa atcttttaaa gcttcattag
    10261 cagcatcaag ggcgtgaata agacttgtat caaaaatttt gatatttgta tcatttttgg
    10321 atattaataa accaatttca gtgcaagcta aaagcactcc ctttgcccct ttttcttgta
    10381 gtttttttat aatatttaaa tatttttctt tagattcttg cttgatttca cctttacaaa
    10441 gctcattaaa aataatatca ttaacgattt ttatatcttc atcgctagga ataataacgc
    10501 taatattttc ttcaataagc acttttttat aaaaatcctg cgtcattgtg tatttagtac
    10561 ccaataaacc aattttttgt atgttttctt gttttaaagc cttagcagaa ctttttgcaa
    10621 tatgtaaaat agggatattt atattttgtt gaatttcatc aaaaacctta tgcatagtat
    10681 tagttgcaat tattataaaa ttagcccctg caagttctaa ttttttagca cattgagtca
    10741 aaatttgtgc agcttcttgc catttatctt ggctttgtaa attttctatt tcttcaaaat
    10801 taacactgta aagtaaaatt tttgcagaat ttaaagattt taatttatca tttatagctt
    10861 gatttattgt tttataataa gtaatagtgc tttcaaaact cattccgcct ataataccaa
    10921 tggttttcat ttttctcctt aagaattaat ttttga
//
LOCUS       DAPIWV010000056        10935 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.057, whole genome shotgun sequence.
ACCESSION   DAPIWV010000056 DAPIWV010000000
VERSION     DAPIWV010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10935
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.057"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            26..1189
                     /gene="ftsW"
                     /locus_tag="RJ272_001059"
     CDS             26..1189
                     /gene="ftsW"
                     /locus_tag="RJ272_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDV7382155.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            1186..2214
                     /gene="murG"
                     /locus_tag="RJ272_001060"
     CDS             1186..2214
                     /gene="murG"
                     /locus_tag="RJ272_001060"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDV7382156.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2185..3348)
                     /locus_tag="RJ272_001061"
     CDS             complement(2185..3348)
                     /locus_tag="RJ272_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HDV7382157.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKAHKKINLFINFTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALS
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(3356..4207)
                     /locus_tag="RJ272_001062"
     CDS             complement(3356..4207)
                     /locus_tag="RJ272_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7382158.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(4270..5159)
                     /locus_tag="RJ272_001063"
                     /pseudo
     CDS             complement(4270..5159)
                     /locus_tag="RJ272_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(5156..5761)
                     /locus_tag="RJ272_001064"
     CDS             complement(5156..5761)
                     /locus_tag="RJ272_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7382159.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGLDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(5751..6896)
                     /gene="thiH"
                     /locus_tag="RJ272_001065"
     CDS             complement(5751..6896)
                     /gene="thiH"
                     /locus_tag="RJ272_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HDV7382160.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNALKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(6899..7675)
                     /locus_tag="RJ272_001066"
     CDS             complement(6899..7675)
                     /locus_tag="RJ272_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HDV7382161.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKTQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(7678..8481)
                     /gene="thiF"
                     /locus_tag="RJ272_001067"
     CDS             complement(7678..8481)
                     /gene="thiF"
                     /locus_tag="RJ272_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HDV7382162.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(8478..8669)
                     /gene="thiS"
                     /locus_tag="RJ272_001068"
     CDS             complement(8478..8669)
                     /gene="thiS"
                     /locus_tag="RJ272_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HDV7382163.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(8666..10108)
                     /locus_tag="RJ272_001069"
     CDS             complement(8666..10108)
                     /locus_tag="RJ272_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7382164.1"
                     /translation="MNLNQTLQEKYPHLEVSVLKLSEVKKNIDFRIDDSFWTMKLIYN
                     NKLNYKKIGECLLKSQYGISINMNEEGDGIPIYRMNDIDNMLCNFEVKKYALIDKNEL
                     QTFRLNYGDVLFNRTNSYEFVGRTGIFYNNRENFVFASYLVRLVCNKEILLPEYLTVF
                     LNTHIGKKEIRRRARPSINQTNVNPEELKEIKIPIFPMEFQLEIQNLVKDSHKALEES
                     KELYKKAEETLYLELGLDPKNPLQSLLDSKTNNPTNSPNISIHTLKESFLKTGRLDSE
                     YYQSKYEDIEKMIRSYKDGFCNLKDLVNDISSGFAFSSDDYQDVGELVLIRINNIKNA
                     TLDLSNVIYLKNEAYNLSPKDKIKKGDILISMSGSIGLSCVVRDDISAMVNQRILKIS
                     IKNFNSDVLVLLLNSFICKMQFERIGTGGVQTNLSSIDMQNILIPKIDSTTQEKIAKY
                     IQESFNLRKKSKQLLDNAKIKVEEQIQGKI"
     gene            complement(10234..10737)
                     /locus_tag="RJ272_001070"
     CDS             complement(10234..10737)
                     /locus_tag="RJ272_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382165.1"
                     /translation="MYHLLDFSTCKCENEKFDLAYKIFKQDFIEAPLYLAGCIYIDPQ
                     SHKKHKGKEKIFWHITTRENKQNKTREFDSQRACRINWIKQIIINHTHSEIKAFYYKE
                     KRAIRFYLWLYNHNFIVILQKLGRSSSFLVTSFYIDKGYNKNIYEKRYRNYINGNDIE
                     LKNCEWF"
     gene            complement(10740..>10935)
                     /locus_tag="RJ272_001071"
     CDS             complement(10740..>10935)
                     /locus_tag="RJ272_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RlfA"
                     /protein_id="HDV7382166.1"
                     /translation="IVQLVDLLIGAISYKARNDIEHVSEIKNYIINKIETLANIELDA
                     GTPPWENKCNIFRIQLGKGE"
BASE COUNT         3694 a         1947 c         1378 g         3916 t
ORIGIN      
        1 ccaataaaga aaagttataa ttataatggt tgctgataaa agattatttt atttaagttg
       61 tattttaatc accataggaa tagtattttc atactctctt acagctttta ctgttctttt
      121 tcttgactat agtgagtttc atttttttat tcgtcagctt ttttttggaa ttagtggcat
      181 acttataatg ttttttattt ctcgattgga ccctgataaa gcactttcta aaaaaattat
      241 tttagctatt ttgattattt cttttatctt tatcatcatt ttgccatttt taccttctgc
      301 attagcaaca gctagcggag gagctaaacg ctggatacgc ttaggcccac tctctatctc
      361 tcctgtggaa ttttttaaaa taggattgat ttatttttta gcatggagct atacaaggcg
      421 tattgatgat agcaaaaaag ctatcagaca cgaggcttta attcttctgc cttattgcat
      481 cttagcttct atagttatag gatatattta tatcactcaa aacgatttag gacaaagcgt
      541 aatttctttc tttttgattc tggctttagc tttttttgca ggagctagta aaaggctttt
      601 tgcttttgga actttaatta ttatgatgat aggtataatg gtaattttta gcaaccaaag
      661 aagaattcaa agaatcgctt cttggtgggg aaatatacaa gatgcttttt tacctatgct
      721 tcctgattgg ctggcaaatg ctttaagagt aagtagcaac agcgagcctt atcaaatttc
      781 acactcttta aatgctatag cccatggagg aatgtttggc gaaggcttag gacttggaac
      841 ttttaaatta ggctttttga gtgaagtgca tactgacttt gttctttcag gaattactga
      901 agaaatagga ctcttaggtc ttggggttat ttgctatatt tatctttgga tgattttaag
      961 aatttttaga attgcaggaa gatgtgaagc taaacaagat tttatttttt gttcaggcat
     1021 agccttactt ttactttttt ctttctttat gaatgctttt ggtattattt ctcttactcc
     1081 actaaaaggc gtagcggttc cacttttaag ctatggagga agttcaatgt gggcaatttg
     1141 tataggcata ggatatgtat taatgatttc aaaaaaggtt aaattatgac aatagcttta
     1201 acaggtggtg gaactggagg acatttggcc atagtgcgtt gcttattaga aagtgcgatt
     1261 aaaaaaaata tagaatgtgt atacataggc agtcaaaatg gtcaagataa agcttggttt
     1321 gaaaatgaag tacgctttaa ggaaaaattt tttttaagct ctaaaggagt ggttaatcaa
     1381 agcaaatttg acaaaatcag ttctttgctc cacaccttaa aactctccaa agattgtaga
     1441 gaaattttta aaaaatacca catccaagcc gtttttagtg taggtggata cagtgcagct
     1501 cctgcatctt ttgcggcttt attctcacat ttgcctcttt ttatacatga acaaaattca
     1561 aaaagcggct ctttaaatat gcttttaaaa cctttcgcta caaaattttt tagcgccttt
     1621 gaaaaagaaa ttagccctta tcctgtagca gataaatttt ttgataatgc taggattcgc
     1681 aaagaattaa aaaatattat tttcttagga ggatcacaag gagctcaatt tatcaacgaa
     1741 ctagctttaa atttagcacc aaaacttcaa gaacaaaata tcaaaatcat ccatcaatgt
     1801 ggaaaaaatg attttgaaaa gtgcaaaaaa cattatcaaa gcttaaatat ccaagctgat
     1861 atttttgatt ttagtttaaa tttggaagaa aaaatgaaaa atgcagatct agctatatca
     1921 agagcaggtg caagtactct ttttgaactt tgtgctaata ctttgcccac tatttttata
     1981 ccttatcctt atgcagctaa aaatcatcaa tactttaatg ctaaattttt acaagatcaa
     2041 gctttatgtc aaatttttat gcaaaactct attaatcttg atgaattttt taagtcaata
     2101 ttaaaactaa atctagaaaa tatttctaca agattgcaaa atataaccca aaaaaatggc
     2161 gcagatatgc taatccaaaa agctttattt gataatttga cttttataag ataaatatcc
     2221 aaagatattt actaaaattc caacaaaaac taacatcaaa atagcaaatg aaaaattttc
     2281 aaatttgtca tgcaaaaaac ctataatcca ttgtccttgt gctgcaatta aatatccaaa
     2341 accctgagat aaagcagaaa gtctcgctgc tatttgagca ttagagcttt tttgtgcaat
     2401 aaaaagcaac gcaatgccaa aaactccacc ccatggaaaa cccatgataa aagcactgat
     2461 aataatagaa attttactat caaaaataaa gagcatacca aaagcgatca catacatact
     2521 gcacaaacct gctatgtaaa aagtatgtaa attttgtctt aattttccta aaagtaaagg
     2581 gccaaaaaga gacactggag ctgcaacaag ttgagcaaat aaaaccatac ttgtagaaaa
     2641 ttctttatca aatccttttt ctacaacaat ttgaacatac caaaaaaaca aagaataagc
     2701 taaaaaactt tgaaatccca taaaaagagt aattttccaa gttgtgaaat ttataaaaag
     2761 attgattttt ttatgagctt ttttcttaat acgaaaaaat ctaccatttt tagcttgagg
     2821 atagtaaact actaaagcta caaaagaaaa aatagcccag aaaaacatag ctccagctaa
     2881 atcaaataca ctaagcaaag gtatagctaa agcaataccc ataatcgaag aaatactcaa
     2941 aacaagacta taaattccca ttatacttgc catttttttt ggaaattttt ctttaataaa
     3001 actaggaagt aaaacatttg caattgctat accacagccc attgctaaca ttcctaaaaa
     3061 taagccatat acaccaaaat aagaacgaat aatttcgcct aaaaaaatta aaaaaattcc
     3121 aaaaacaata gcacgaatag gagaaaaata ccccacaata aaagaaatac ttccaaaagc
     3181 tatcaaagga agacttgtaa gtatacctgc tacggttgag tttaaataat acttatcttt
     3241 aataatatca ataataggcc ccactgcagt aattggggct ctaagattaa aagctacaat
     3301 aataacaata ataacattaa tccaaaatat ctttttaaaa gaagccataa aagccttatt
     3361 tgttaagttc tactttgaat attttacctt ctgccatctt aggaatccat aaaatattac
     3421 cttcaataaa tatatctgca ggacctttca tcaaaggaag ttcaagtttt acagatttaa
     3481 cattatctaa attataaata tatccattta gattatttcc ccaagaactt accaataaac
     3541 catctttata aggaactatt ccatcataag attctttttc atttttaatt atactgagtt
     3601 cttttgtatt taaatcataa gccattacaa caccgccact tacaccatca ggatgataac
     3661 cagttataaa aagcttatgt ttttttctat ctagatataa cccatttgga ccgccaaatt
     3721 ttgctaaatc aagttttaat aattcatcat attgcttagt ttttaaatca acctttaaaa
     3781 taagccctgt gccagtatcg ctaaccaaaa gcgtattgtc gtctaatttt tctatgtcat
     3841 ttaaaaagat tgcaccttta ataggtaaat taaaaatttc ttttttagtt ttaagatcaa
     3901 aaccgcgtaa aacatcgata tctaccacat aaagagtttt tccaatctcc atcatgcctt
     3961 ttggtgcatt aagatgggtt aaaaatttat attctagcac tttgccattt ttatcaagct
     4021 tagaaataaa tccatcatta tctttcgcca aaggttcaag tttttctcct acattagata
     4081 cataaacata gtttttatct acaaaaatac tttcagggct tttaaaacca tcaaattctt
     4141 gatattttaa ttcacttgca ccaagcaaac ttccaagaag cgctaaactt aaaacatatt
     4201 ttttcatatt ttctccttta tttaaaaata ttttcattga attatattta tttagataaa
     4261 aaaaatgtgc tagttttttg ataaaaaata caagtttttt gttttttgat attgcttagg
     4321 agtttgctca tatttctctt taaatctttc aataaaccaa gctaccgaag aaaaagcgca
     4381 ctcattagct atttcattga tatttttttt agaaaattta agtaaaatct ttgctttttg
     4441 caaccttttt tcatctaacc attttttagg actttgtcca aaacatttct taaattcttt
     4501 agaaaaagtt gctaaatcta atttcgcaaa attagacatt tcatttacgc ttaaaaattc
     4561 tctaccacaa tactcaaaaa gttgggaaag atcaaggcga aattctttta aaattcctga
     4621 taaaaaacta ataaaataaa tattcttatt taaaagcaaa tgtaaaaaaa tctcttcaaa
     4681 tttcaaactc actataggat ctaaaatttg cgtattttct tcaaaatgcg gtgaaaaact
     4741 ttccaaaatt ccttgcaaaa tcttatcatt ttttacccaa aaaatttcat agttttgaaa
     4801 cttttgatct agtttaaaaa aatctttata cttataaata agctcaatta aaaatgcatt
     4861 gtcaaaaaaa ataaataagc ttcataaact cctttactaa gtcctacatt gcttaaagta
     4921 tagctcccag cttttaaaaa caaagtttca taagagttaa tcttataatc ttttgatgca
     4981 gtgtgtaaaa ttttatatcc tttgcgaaca aaagttaaaa gatgacttcc tacattaaca
     5041 aaagtagaat gcgaagtatc cgtttgtgta tatttagcaa aagtgcaaga tttaattttt
     5101 ttataattga caccttttaa ttgctttaaa tcttctggta aagaaagaat tttattcatc
     5161 gtaaattttg cctacattct aaaagatact ttttaagatc tttttctttc attaaaattt
     5221 cacgcatgca aacacctact acatttatat ctttaaaatt ttctatattt tgagcattga
     5281 taccgcctat agcataaagt ggaatttgac taaattcaag caaggatttt aaaaaatcaa
     5341 gccctttagg ttctaaaccc atcttgcaag aactttcaaa aatatgccct acaaaagcat
     5401 aatttacctt atagctcatc gcctctaaaa gctcttcttt gctatggact gaagtaccaa
     5461 gtatatgaaa atattttgtt aatttaggtt cttttcttag caaagaaagc ggtgcgtgaa
     5521 aataacgatg tcccaatttt aaacactccc tatcaaaaaa atgcaaaaaa caagtcactt
     5581 tttgctttgc gcaaatgctt aaaacttctt ttgctaagtc ataatactca aattcgctta
     5641 aatctttttc tcttaaaact atagcatcta ccttagcctt agcaagtttt tcaatctgct
     5701 ttaaaaagtc tatttctaca cattttctat cgcttatggc gatgattttt ttatcccaca
     5761 tagatactat cgctcatcac agcttgtaaa ttggatcttt taagcatagc taaaatttca
     5821 tccacgctcc tatcatctga aatttcaaac tgctcatcac cctttttctc acccttatgc
     5881 tcacctatac ccacactcac tcctgcactc attttagtag caccaagctt gataacctca
     5941 tctctaaagc ctattctttc acgacttgaa atggtaatgc ctgcaaaagg taaaaaaagt
     6001 ctataagcac aaagtacttg caaaaggcgt ttttcactca catctttagg atgaatttta
     6061 gcattattga taataggtct taaacgaggc accgaaatag aaatttcagc atgaggataa
     6121 gcttgttgta aaaaatgcgc atgaagtgcc gtagcaaggg cgtcttttct aaaatcatct
     6181 atacccaaaa gtgcgccaaa agccactcca cgcatacccg cttttaaagc tctttcttga
     6241 gcattaaagc gataagggaa aatgcgtttt tcaccagcta aatgaatttt agaatatttt
     6301 aaagcattgt aagtttcttg aaaaacagtc acataatcac aacccttttc atgcaaaatt
     6361 ttatattcat cttcattcat aggataaatt tcaacgccta caaccttaaa atactctcta
     6421 gctattttac aagcatttgc tatatattct acacttgcaa actccctacc ctcgcctgtt
     6481 agcattaaaa tttcttctaa accactttta gcaatggctt gcatttcttc gtgaatttca
     6541 gcttcactta gcttggctct tgcgatttta ttaccttttt gaaaaccaca ataaacacat
     6601 ttagaattac aataatttga caaataaagt ggggtaaaaa gagagataga atttccaaaa
     6661 tatttttgct tgactttagc ggatttaaag gctaattctt ctatgaaatc ttctgctgca
     6721 cttgaaagca aagcttttaa atgctctatg cttaaatgtg tttgatttaa agcattttta
     6781 acatctttag cgctaaattg actctcatca taactttgaa cttgagttaa aaccttgttt
     6841 aaaatttcgc tttttatttc ctgcatatga ggtaaatact gcatataatc ttgcataatc
     6901 aatcccttaa aaagcctgtt aatggagaac ttgctttagc tttactcaca cttgccaaac
     6961 ctgctaaaaa agccgctctt cccgcattta ctgccaaaga aaacgctttg gccattaaag
     7021 caacatcttt tgcttcagct atggctgtat ttaccatcac cgcacttact cccatttgca
     7081 tagcttcaca agcttgtgaa ggacttccaa tacccgcatc tacaatgata ggcaaatcaa
     7141 tttcattaag caaaatttgt ataaattcct tagcacataa gcctttatta ctcccaatag
     7201 gcgctgctaa aggcatgata gccgcagctc cagcatcacg catagctcta gctgcgtaaa
     7261 gatcagcatg catgtaaggt aagggtgtaa aaccctcttt agctaaaagc tcgcaagctt
     7321 taatcgtttc ataattatca ggcaacaaat acctactatc gcttatcact tctatcttga
     7381 taagttctcc acaaccaagc tctcttgaaa gccttgcaat gcgtaaagct tcatcggcgt
     7441 ttcttgcgcc tgaagtgttg ggtaaaagtg tgatattttt agggatataa tcaagtatat
     7501 tagcaatttc ccctgtattt gcacggcgta aggctagagt gataatctgt gttttagctt
     7561 cttctatagc tgattttata agctctagcg aatattttcc agaacctaaa ataaatcttg
     7621 aatcaaactc gtatttgcct atttttaatt tatcgttttt taaattttct tgcattttta
     7681 ctccttattt gctaaaagct ctaaaacaag gttactttga tgtcctgcgc aaatatttac
     7741 ccttggcgcc ataagtccat ttcctagctt agcaccattt accaaatccc cacacacata
     7801 gaaattttta gcaatttttc ttgtttgtat gctgttgcta tcaccatagc ccgcaagccc
     7861 tgaagcacag attaaaacac tatctttgta aaatctatga aaattttgcg ctatcatcgc
     7921 ttttgcgata gcactatcaa aggcttcaca aactatatct atatctttaa acaaagattt
     7981 taaattatcc tcatcgattt ttaaggtaca aatttcaacg ctgatataag gattaatttc
     8041 gctaatttgc tcttttaaag cttcggtttt aaacttgccc aaatcactta cacgataagc
     8101 ctgacgattt aaattactag gctcaatcac atcaaaatca atcaacttta aataccccac
     8161 tccacttctt gccaaattta tcgctatatg tgatccaagt ccgcctaaac cacacaccgc
     8221 cacgcgccca tttttaagtt tatcgtgaag ctttggtgta tgtcttgctc tcatcatagc
     8281 atctagtgcg tcttttggag gtaaagtatt tttttctata caaaaaagct catcattttc
     8341 atttaaagcg atattctctt ttgttgcaaa accattgata atccatacat cattttcatt
     8401 tttgctgata ttttcaaaaa attccaaact tgttttaaag tctgtatcaa gttctttgcc
     8461 attaaatttt actctcatca tccacctcct acaaaactta cgatttcagc tttatcgttt
     8521 tcttttaaaa tcaaattttc aaattcactc ttaggtataa tctctccatt taattccaag
     8581 gcgataagtt ctattttcaa gcctttttct ttgataaaat ccataaattt aagctctttt
     8641 aactcaagct tttgtccatt gataatcata tttttccttg tatttgctct tctactttaa
     8701 tttttgcatt atctaataat tgtttagatt ttttccttaa attaaagctt tcttgtatat
     8761 attttgcaat tttttcttga gttgtagaat ctattttagg gataaggata ttttgcatat
     8821 ctattgaaga aagatttgtt tgaaccccac ctgtaccaat tctctcaaat tgcattttac
     8881 aaataaaaga atttaaaagc aataccaaaa catcactatt aaaattttta atcgaaattt
     8941 ttaaaatcct ttgattaacc atagctgata tatcatctct aaccacacaa gacaaaccaa
     9001 tgctaccaga catagaaatt aaaatatcac ctttttttat tttatcttta gggcttaaat
     9061 tataagcttc atttttaaga tagataacat tgcttaaatc tagcgtagca ttttttatat
     9121 tattaatcct aattaataca agctctccaa catcttggta gtcatcactt gaaaatgcaa
     9181 aaccacttga aatatcatta actaaatctt ttaaattaca aaagccatct ttataacttc
     9241 taatcatctt ttctatgtct tcatatttac tttgataata ttcagaatcc aatcttcctg
     9301 tttttagaaa agattctttt aatgtgtgta tagagatatt tggtgagttt gtaggattat
     9361 ttgttttaga atctagcaaa ctttgcaatg gattctttgg atcaagtcct aactcaaggt
     9421 ataaagtttc ctctgctttt ttatacaact ccttactttc ttctaatgcc ttatgagaat
     9481 cttttaccaa attttgaatt tctaactgaa attccatagg gaaaatggga attttaattt
     9541 cttttaattc ttcaggattt acatttgttt gattaattga tggtctagcc cttcttctta
     9601 tctctttttt accaatatgc gtatttaaaa aaactgtaag atactctggc aacagaattt
     9661 ccttattgca aacaagcctt actaaatatg aagcaaaaac aaagttttct ctattgttat
     9721 aaaaaattcc tgttctaccc acaaactcat aggaatttgt tctattaaac aaaacatctc
     9781 cataatttaa cctaaaagtt tgcaattcat ttttatcaat taaagcatat tttttgactt
     9841 caaaattaca aagcatatta tcaatgtcat tcattctata aatagggata ccatcgccct
     9901 cttcattcat atttattgaa ataccatatt gagattttaa taaacattct cctatttttt
     9961 tatagttcaa cttattgtta taaataagct tcattgtcca aaaactatca tctatgcgaa
    10021 aatctatatt ttttttcact tcactaagtt ttaatacact tacttctaaa tgcgggtatt
    10081 tttcctgcaa agtttggttt aaattcattt tattcctttt tttatttcaa tctaagtaaa
    10141 aaatatttat aattataaag ctcaactacc ggtggtagaa agagatggct agcttttatg
    10201 cttcttgcag atgcctaaat ctgcaccaaa cccctaaaac cattcgcaat tctttagctc
    10261 tatatcattt ccgtttatat aatttctata tcttttttca taaatatttt tattatatcc
    10321 tttatctatg tagaaacttg tcactaaaaa tgaactactt ctgcctagct tttgtaaaat
    10381 aactataaaa ttatggttat ataaccacaa ataaaaacgg attgcccgtt tctctttata
    10441 ataaaaagct ttaatttcgg aatgagtatg attgataata atttgtttaa tccaatttat
    10501 tctgcaagct ctttggctat caaactccct tgttttattt tgtttgtttt ctcgtgttgt
    10561 gatatgccaa aatatctttt ctttcccctt atgcttctta tgtgattgcg gatctatata
    10621 aatacaacct gctaaataca atggagcctc aataaagtct tgtttgaaaa ttttataagc
    10681 taagtcaaat ttttcatttt cacatttaca agtgctaaaa tccaagagat gatacattat
    10741 tattcacctt tacccaattg aatcctaaaa atattacatt tattttccca aggtggcgtt
    10801 cctgcatcca attcaatatt tgccaatgtt tcaattttat ttataatata attttttatt
    10861 tcacttacat gctctatatc atttcttgct ttgtatgaaa tagcacctat taacaaatcc
    10921 acaagttgaa caata
//
LOCUS       DAPIWV010000057        10916 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.058, whole genome shotgun sequence.
ACCESSION   DAPIWV010000057 DAPIWV010000000
VERSION     DAPIWV010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10916
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.058"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..1072
                     /locus_tag="RJ272_001072"
     CDS             <1..1072
                     /locus_tag="RJ272_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HDV7382167.1"
                     /translation="KKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQDD
                     DIYFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKND
                     FLDKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYIGDGVFYLASKMIEKYPEK
                     KIEILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAF
                     DNEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPT
                     LSYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEF
                     LALIEGIQAPSLKNHTLKVSLI"
     gene            1069..1452
                     /locus_tag="RJ272_001073"
     CDS             1069..1452
                     /locus_tag="RJ272_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7382168.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1445..2128
                     /gene="rsmD"
                     /locus_tag="RJ272_001074"
     CDS             1445..2128
                     /gene="rsmD"
                     /locus_tag="RJ272_001074"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDV7382169.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            2187..3233
                     /locus_tag="RJ272_001075"
     CDS             2187..3233
                     /locus_tag="RJ272_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HDV7382170.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3233..3574
                     /locus_tag="RJ272_001076"
     CDS             3233..3574
                     /locus_tag="RJ272_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382171.1"
                     /translation="MKMDNFLNTYNMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3637..3834
                     /gene="flgM"
                     /locus_tag="RJ272_001077"
     CDS             3637..3834
                     /gene="flgM"
                     /locus_tag="RJ272_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HDV7382172.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATASAIADSLI"
     gene            3876..4310
                     /locus_tag="RJ272_001078"
     CDS             3876..4310
                     /locus_tag="RJ272_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HDV7382173.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDSLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4320..6146
                     /gene="flgK"
                     /locus_tag="RJ272_001079"
     CDS             4320..6146
                     /gene="flgK"
                     /locus_tag="RJ272_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HDV7382174.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKINGGQLGAQLDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6163..6918
                     /locus_tag="RJ272_001080"
     CDS             6163..6918
                     /locus_tag="RJ272_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004306512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HDV7382175.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFTAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYEKRENTTDAILAFIQKIKTLNSYSSYGYDFFFGKIWQNTPNSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHTHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKERQI"
     gene            6929..7693
                     /locus_tag="RJ272_001081"
     CDS             6929..7693
                     /locus_tag="RJ272_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDV7382176.1"
                     /translation="MGFEHLDTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFSTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7686..8867)
                     /locus_tag="RJ272_001082"
     CDS             complement(7686..8867)
                     /locus_tag="RJ272_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDV7382177.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDSYGIFCIFLFV
                     VFIVMLILAYKNFHSFAFSCDFLFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
                     N"
     gene            complement(8864..10423)
                     /locus_tag="RJ272_001083"
     CDS             complement(8864..10423)
                     /locus_tag="RJ272_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HDV7382178.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTVIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKMILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10413..10880)
                     /locus_tag="RJ272_001084"
     CDS             complement(10413..10880)
                     /locus_tag="RJ272_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7382179.1"
                     /translation="MQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYK
                     ELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKT
                     IFWALKANELDKQKQDSWLIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         4152 a         1700 c         1576 g         3488 t
ORIGIN      
        1 gaaaaaatta gaattaagaa tttttagatt tgataaaacc aaggattatg aggcttatta
       61 taaaccttat atttatgata attatgaaaa ttttgcaagt ttttatgatc tgcttttgca
      121 agttcaagat gatgatattt attttgattt tgataaagat gaagatactt acatagttgt
      181 aaataagcaa atcataccac tttttacacc tttagaaaaa atagcaaaag aatttgattt
      241 tagtctttgt atcgagcctt taagcacaaa aagagccatt aaagatctta tcatcgataa
      301 aaatgatttt ttagacaaat acaaatatct tgaaaaattt ggtgatgaag aggataaaaa
      361 actttatgca aaatatgatt atttatatta tgcaagtgaa attttagact atcttcctga
      421 atatataggc gatggagtgt tttatttggc ttcaaaaatg atagaaaaat atcctgaaaa
      481 aaagatagaa attttaaaaa ctctagcaga taaagaaaag ggtatttttt atcatcttga
      541 aagcaaaaat gaaattttag aaacaacgat caaaaaccta caaaatgaaa ttttaaattt
      601 agggcttttt gataaaaata ttttacactt tgatttacct aaaaccaatg cttttgataa
      661 tgagatcaaa gaacttaaag aaattaaaca taattttaaa gatttcaata tagcttttta
      721 tggttttaat gcttgcgata ctttaaaatc gaaacttaag gctaaattta tttcctatga
      781 aaacagtata aaaaataatg gctttagctt gcttaatcta aatcctacgc taagctataa
      841 aatagccgca gatattgttt tggacgctta tgatagcggg gctgatttta tggtagtaaa
      901 agaagaaaaa gatttttatc tttttgatac ttgtgctaaa aaacttatgc aaacaagtgg
      961 aagggaattt gaagactttt atattttgag ccgttttgag tttttagccc ttatcgaagg
     1021 catacaagct ccatcattaa aaaatcacac tttaaaggtt agtttgatat gaaaatctct
     1081 ttagaatgca aagatctcat catagaaaaa actttagaac tttttttaaa agatcatttg
     1141 gtaatgaaaa aaaattgtga tttcatcatt agcgatgaaa aaattcatac cgcaaaaccc
     1201 ttatttatca tctctaaaaa ctctccattt ttaagcatac catttagcaa agaagccttg
     1261 tttgagtctt taaatgaatt tgataatgcc ttaaaagcag cagctttgca acttgcactt
     1321 gaacaaaaaa gactgcttga agaaaaaatt gacgctattg ctttggaatt taaaaaagat
     1381 tatgaaaata aaatcgatct tgccataaaa gatcttaaaa acaaactcgt aaaagcactt
     1441 aatgatgaat gatgaattta taagcgttaa agactttttt aatcacaatg aaaaaagaaa
     1501 aaaatttctt caaaaacaag aaattaaacc tcctaaagaa aaaacaaaaa aaactaaaga
     1561 aacaaagctt tatacaaata tagaaagtgg taaatacaaa gggaaaaaac tacttttacc
     1621 tagtcttaca acaacaagaa gtactaaaag catagtcaaa agttgtgttt ttaatgtaat
     1681 aagagaagat ttaagaagta aaattttcat tgaagccttt ggaggaagtg ctttaatggc
     1741 ggctgaagca ctaagtaatc atgctttaaa agcttatgct atagaacttg atgcaaaagc
     1801 ttataaaatt gctttagaaa atgctaaaaa tatagatcca aatttagaag tgatccatgc
     1861 aaatactttt gaaattttac ctaaactcat agaaaattca aaaaatgaaa tcatattata
     1921 tcttgaccca ccttttgata ccagagaagg ttttagcgat atttatgaaa aaatttatca
     1981 ttttttagaa aatttagatt taaagacttt aaatttaatc atttttgaac accactcaac
     2041 cataaaaact cccgaaaaaa tccaaaattt tcaaaaagtc aaagaaaaga aatttggatc
     2101 aactagctta agcttttacg cttcttaact tacttggaac acttcttgct tgatctatca
     2161 tcaacaatag attaaaggaa gaatccatga gagttttaac gatattttta ctctttatga
     2221 caagcatttt tgcagtgcaa atcaaggatg tagcaaacac tgtaggtgta agagataacc
     2281 aacttatagg ttatggactt gttgtagggc ttaatggaag cggcgatgga acaagctcta
     2341 aatttacact acaatccatc tcaaaccttt tgcaaggtat gaatatcaaa gtagatccta
     2401 acgatatcaa atcaaaaaat accgcagctg ttatggttac agccaaactt ccagcctttg
     2461 caaaaagcgg agataaactt gatattaccg tttcatctat gggtgatgca aaatctttac
     2521 aaggcggaac acttttactg actgcacttc gtgggattga tggtgaaatt tatgccatag
     2581 cacaaggctc tatctcaaca ggaggtttaa cacctagacc aggaggagca ggttctcact
     2641 caactgctgc aactgtaatg ggcggagcta atgtagaaag agaaattcca caaaatttta
     2701 gccaaaacaa tgatctaacc ttaagtttaa aagtagcgga ttttaaaacc gcaaacgata
     2761 tagaaagagt tttaaatact gtctttggcg aagaagtagc taaagccatc gactctcgca
     2821 cagtaaaact caaaaaacct gaagatcttt caaatgttga ttttatggca agagttttag
     2881 aacaagatat agcttataaa ccacaaagca aagttatcat cgatgaaaga acaggaacag
     2941 tgattgctgg agttgatgta gaggtagaac ctgttttaat cactcataaa gatatcacta
     3001 taaaaataga tccaaacaat aacgcagtag ctaatcaaaa tgaaatcgat atgaaagatg
     3061 gtggttttgt agatccaagt tcaaatacct taagaatcaa caatgcaaaa agcacagttg
     3121 caaatatagc tagaatgctg aacaagcttg gagcaacccc aaatgacatt atcgctatta
     3181 tggaaaattt aaagcgcgca ggtgcaatta acgcggattt ggagatcatc taatgaaaat
     3241 ggataatttt ttaaatactt ataatatgaa tagtgcttta cttgatcgtg cagccaaagc
     3301 aagaagttta gaatcaagca tcaaaataaa tgacaatgat atagttacaa agagcaaaga
     3361 agatgaagcc ttaaaagaac aaacggatgc ttttgaagca ttttttttaa agcaagtttt
     3421 agacgtatct ttaaaaagtc aaaattcact ctttggaaaa gatgccagcg atgaaatata
     3481 ctcttccatg tataacgata ccatgagtaa agctttaagt ggaggtatgg gtttttcaaa
     3541 attattatac gattttttaa aagaaagggg ttaagttttt taaatttggg tcgatatggt
     3601 ttgtagagga ttataactaa gatcaaggag gcagaaatga tcaatcctat acaacaaagt
     3661 tatgtggcaa ataccacatt aaatacaaat agaatagata aagaaactaa aacaaacgat
     3721 actcaaaaaa cggaaaatga taaagcgagt aaaatcgcag agcagattaa aaacggtact
     3781 tataaaatcg atacaaaagc tacggcttct gcgattgctg actctttaat ctaaaacttt
     3841 cattctcctt tttttgagag agaaaaggag aaaatatgct taaacaaaga cttgatgaag
     3901 taaatgctat cttagcaaaa cttattgctt taaccgaaga agatatagaa aatatcaaag
     3961 tggctaaaca tgagagtgta acgccaagtg tagaagaaaa aaacaaactt atcgccgaat
     4021 ttattacagc taaaaaacaa cttgatgttg ccttggttga gctaaataat agctctacaa
     4081 aagggcttag tgaactctta gatgatgaag ataaacaaaa actagatcta cttaaaaaaa
     4141 atcttcaaaa ccttcatagt aaaaacaaag agtatgctaa atttgttctt attgtcaaag
     4201 attttcttga tagcttagta aataaaatgt ttgatatcaa tgatggaaca aataatgctt
     4261 atggagataa aaagacaaat ccagagtcaa ttttcaagat caatgtataa ggatttataa
     4321 tgggtatttt tggaacatta tacacaggtg ttacaggctt aaaggcaagc gaagttcaaa
     4381 tcgcaacaac tggaaacaat atctcaaatg ctaatgcaac tttttataca cgccaaagag
     4441 tagtgcaaac tacaaatggg tatattacca caggtggagt tcaagtaggc acaggaactg
     4501 ctatagaaag tatagtgcgt ttgcatgatg agtattctta ctataaatta aaaggtgcat
     4561 caaaccaact agaatacact aaatatatgg cttcaacctt acaagaaatc gctcagcgtt
     4621 ttccagactt acaaaatact ggaattttga aagatttaga aaattataac aaagcttgga
     4681 atgattttgc atctaaccct aatgaaaatg ccacaaaaat agcccttgta aaagcttctc
     4741 aaaccttaac agaaagcgtt aataacactt ttgcaacctt ggataaaatc caaaaaaaag
     4801 taaatgatga tattaaaaat acagttgatg agattaatag aatcggtgaa gaaattgcta
     4861 ctataaataa acaaatttat ggacaagaag ccttaccaac agaacacgca aatgagctta
     4921 gggatagaag agatgaactt gaacttaccc tttcaaagct agttagtgca gttgcaagca
     4981 aaaatgaaat caatcaagac aatcgccttg atacaaccat cactgatcca ggacatcaat
     5041 acaatctaag tatagaaggt tttagtatag tagatgggat aaattttcat cctttaaagc
     5101 ttgattatga tgataaaaat aaatcttata gcatttatta tgaaactcct gatgaaaaag
     5161 ttcgcgatct tactgcaaag attaacggtg gacagcttgg tgctcaactt gacttacgcg
     5221 gtagaaacta tagcaaaagc aaaggaaaat atgaagatgg aattatccaa ggttatatgg
     5281 attctttaga tacttttgct aagaccatga tcaatgaaac taacaatctt tatgcgagtt
     5341 ctgcgaaaag ttctgttact tctgattatc tatctggact taagggagat attcctttag
     5401 ttaattacga cagaaccata caaccaggaa gttttgatat agtcatttat gatgataaag
     5461 gcgataaaaa actcaccaaa accatcacca tagatgtaaa tacaaccatg aatgatatca
     5521 tgcgtcaaat caatgccaat acagatgata atgacaataa aaattcaaac gatgatgttg
     5581 atgatcatat caatgcaagt tttagctacg atgcaaaaac tggagatggt ttattccaaa
     5641 tcaatgcaaa atcaggcttt aaggtagcca ttgaagataa aggcacaaat ttcgcaggtg
     5701 cgtttagcat aggtggtttt ttcagcggaa ctgatgcaag tgatatgaaa gtaaaagatt
     5761 ctatcttaaa tgatccaagc acagtaagag caagctcaaa tggggttgat agtggcaatg
     5821 acatggcaaa taaaatcatc caacttcaat atgaaaaagt taatttttat aatgaagatg
     5881 gtactatcga taatcttact atggaagaat attaccgcaa acttacaggt aaaatagcct
     5941 cagatggtga aaataacaat gttgtaaatt caagcaatga aactctttat aattctgttt
     6001 atagcgaata ccaatctaaa agtggtgtaa atacaaatga agaattagcc gctcttatac
     6061 aatatcaatc aagttacggc gcagcagcaa aaatcgtctc aactgtagat caaatgcttg
     6121 ataccttact aggacttaaa tcttaagctc tagtaatatc aagtgaaaaa ttttatccat
     6181 cttaaagcca agcttgattt tttagccaat caaaaaaaca ccaatcattc cctttttgaa
     6241 actccagatc ctttgcaaat tgctaaaatt cacaatgatg aatttactgc cttaatttgt
     6301 gctttatttg cctatggaaa tgctaaaaat atagtaaatt ttctaaaaaa acttgatttt
     6361 tctttattaa accttcaaga aaaacaaata aaaaaagaac ttaaaaattt aaaataccgc
     6421 ttccaaaatg agaaagatat acaagaaatt tttatcactc tttcaagact gaaaaatgaa
     6481 atttcactct acgaactttt ttatcaagcc tatgaaaaaa gagaaaatac cacagatgcc
     6541 atcttagctt ttatacaaaa aatcaaaacc ttaaattcat attcaagtta tgggtatgat
     6601 tttttctttg gaaaaatttg gcaaaacacc cctaattcac ctcttaaacg ctataatatg
     6661 tatctaagat ggatggttag aaaagatgaa cttgatcttg gactttttac caaaattcac
     6721 accaaagatc ttttaattcc acttgataca catacacata aaatttcctt gaccttagga
     6781 cttctaaagc gtaaaatata tgattataaa agtgttttag aactcacgca aaatttaaaa
     6841 aaattagatg caaatgatcc cataaaatat gactttgcac tctatcgttt agggcaaagt
     6901 aaggaaagac aaatttaagg agtgaaaaat gggctttgag cacttagata caatttatta
     6961 cttcatactt ttttttgtag ctctttttgc tggttttata gattctattg taggtggagg
     7021 agggcttatt actctaccag cactcatagc ctgtgggatt cctgcgcatt tatctttagc
     7081 aacaaacaaa ctccaaagcg tctttggttc ttttacggct actttaactt attttaaatc
     7141 caccactcta cctcatcttg cttggggtgt tttttctaca gccttaggag cagctatagg
     7201 aagctatagc gttctttttg taaaagatga gcaattaaag cttattatct taatcttttt
     7261 aactcttact ttcttatata cagccttacg tcctaactta ggcaaacacg aaagcgaacc
     7321 taaaataaaa aatatcaaaa tttttcattt aatttgtggc ttaactttag gattttatga
     7381 tggattttta gggcctggaa cgggttcatt ttggattttt gcttgtgtga tgctactagg
     7441 ttttaatatg agaaaagcaa gcattaatac taaaatttta aatttcacta gtaatatcat
     7501 tgctcttgct atatttttat ggcaatacga acttttatgg gctgtaggct tgcttatggg
     7561 cgtaggacaa gttttaggag cttatttagg ctcaaaactt gtattaaaaa ctaatggaaa
     7621 gtttataaaa actttatttt taatcgttgt aggagctact atcattaaag tagcttggga
     7681 ttattttagt taaaattgat ccctgagcta agctcccaca taggtaaaaa tatacctaaa
     7741 gccaaaaaca aaactaaaag cgccacaaat aaagtcatca taggctctaa aaaaatcaaa
     7801 aatctatcca ttaaattttc acttttttgt tgataatatt tggcaatttc ttcacttaac
     7861 acttcaagtc ttccgctttt catcgcaaca ctaagcatag aaaataccaa agaatcaaaa
     7921 atatcaatct ttttaaaagc ctgacttaac tcaagaccag aatctataaa actaaaaagt
     7981 tttttatact gaaaaattaa aaatttattt tcaagcccta taatagctaa atcaaaagct
     8041 ttagatattg aaattccatt ttttaaaagc aaagaaaaaa ccataaaaaa ataataattt
     8101 tgattataaa taatcaaacg agaaatcaaa ggtattttta aaaataaaaa atcgcaagaa
     8161 aaagcaaaag aatgaaaatt tttataagct aaaataagca taacaataaa aacaacaaac
     8221 aaaaatatgc aaaaaattcc atagctatct aaaaaattat aaatttctaa cattacatgc
     8281 gtgataaaag gcaaactcgt gcctaaattt tcaaataaat ctttaaaatt aggcactaca
     8341 aaaagcatta aaaacaaaaa tgctccgata atacttaaaa aaaccaaagt aggatatcta
     8401 aaagcctttt tcaattgttt ttgactctct aagctttttt ctcgaagttt agaaatttga
     8461 ctaaacactt cgctgatttt tcctgtcttt tcagccgttt ttatcaaagc tagctccgca
     8521 cgatttaatc caaaattagc attttcaaaa gcttgattta gattttgggc taaaattaaa
     8581 ttgtctaata tttttttcat aatcttgcaa gaatgcataa gatataattc tctaatcgct
     8641 tcttgaacac ttaatccaac ttcacacaac aaagccagct ctttaaaaaa gagtataaaa
     8701 ttttcatctt ttaatctctg aaaattagat ttttgaattt cttttatatc aatgattttc
     8761 caattctttg ataaggcttt tgcttgtgct gtatttaaat tttcagcttt tatagttttt
     8821 gtataatttt gattgttttt aagaaattcc acttcataaa atttcatctt acaaccctta
     8881 aaagctcatc tatacttgta agaccttctt tggctttttt taaaccttgt tcaaacatag
     8941 tttgaaagcc atattttttt gcaagctcca ttaaaatcat tttatcttga ttttccctaa
     9001 ttgcacaaga taaatcttca ttgatctcta agcactcagc gattaattct ctgccaaaaa
     9061 atccactatg atgacaacgc tcacatcctt ttggttcaaa aaattcacct tcaaattcaa
     9121 tataatgttt tttgcttttt tgcttacacc aaggacaaag ttttctaacc aaacgctgtg
     9181 ctataacaag actcaaagcc gatgctatca agtaactttt tgcttgcata tccaaaagcc
     9241 tatcaatggt gctaagagca tcattagtat gcaaggtgct taaaagcaaa tgacctgtta
     9301 aagaagcttt aagtgcaata tctaaacttt cttcatcgcg aatttctcct atcatgataa
     9361 tatcaggatc ttgccttaaa attgctctta aaacactatt aaactcgact ccaacttttg
     9421 aattaagcaa aatttgctgc actaaaggaa ttttatattc tataggatct tctgcggaga
     9481 taatcttttt ttcaatactt ttcaactcat ttaaacacgc gtataaagtt gtgcttttac
     9541 cactacctgt aggaccggtt aataaaatca ttccattggg acgatgtaaa atctttttta
     9601 aaatttctaa atttttattt ccaagattta gtttatacaa atccaaaatt tctttatcat
     9661 gttttaaaat tcttataaca acactttcgc cataaatcaa aggcaaacat gaaacacgaa
     9721 aatcatatct ttcattttca aaatctaatt caaaacttcc atcttgtgtt tttcttgatt
     9781 cagctaaatt caaacaagct aaaaatttga catgaaaaac caaagcttca taaatatcct
     9841 tctcaaaaat agcaaattca cgcaaaattc catcaaccct aaacctaatc aaagcatcat
     9901 cattccttgc ttctatatga atatcactcg catgaaaaga taaaatttca tgtaataaaa
     9961 aatcaaaaat ttgactgatg caactttgat catctctttt gtgattttct tgccattcaa
    10021 gtctaagctt aatgcttaat cttttaatct cctcttgaat gcgaatttga tttaaaattt
    10081 tagctatctt taattcatcg gcaattacag tgtcgatttt ttcacaaatc ataaaagtct
    10141 taacttgctc taaaagctct aaagaacaag gtttggatct aataatcata aagccgtcat
    10201 tgtttttaat aagcagaaat ttaaatttta aaagtaaaga aaaaggtata ccttcataaa
    10261 taaaatcatt atcttcatct aaatcaacaa aatgcaaatt acaaaaattt gctaattttt
    10321 taaaaaaatc ccaagaagtg atattaaatt tagtgcaaat ttcatcaaga cttatttcat
    10381 tatcaatata agcttgaaaa attttatcca ttctactttc catctaattc cattaaacca
    10441 taataattta tataagcatc taaagcactt tgagcttctt tttcttcgcc taaagctctt
    10501 ttagcctgag caaaaatcag ccaagaatct tgtttttgct tgtcaagttc attggctttt
    10561 aaagcccaaa atattgtctt ttgataagct ttaatatcaa aatacttctt agctaaattt
    10621 aatgcctttt catagcttgg attttgataa aaagattttt ttaaatcaga aatatttaaa
    10681 attttagaat caatttctat cttgctaata tgtgtatttt cctgcaccgc tttaacttct
    10741 tctagttctt tatataactt ttccctagaa atcttatttt tttcttgtaa aatttgcgct
    10801 tgaagaatct tttgctccaa atgcttttta tgttcaatag cttgcaaata aatatttttt
    10861 tgcttattat atttttgcat tagcacaaaa aaacaaaatg ctattactga tattag
//
LOCUS       DAPIWV010000058        10876 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.059, whole genome shotgun sequence.
ACCESSION   DAPIWV010000058 DAPIWV010000000
VERSION     DAPIWV010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.059"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            116..1915
                     /locus_tag="RJ272_001085"
     CDS             116..1915
                     /locus_tag="RJ272_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HDV7382180.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            1928..3502
                     /gene="pckA"
                     /locus_tag="RJ272_001086"
     CDS             1928..3502
                     /gene="pckA"
                     /locus_tag="RJ272_001086"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDV7382181.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     YEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3512..4894
                     /gene="argH"
                     /locus_tag="RJ272_001087"
     CDS             3512..4894
                     /gene="argH"
                     /locus_tag="RJ272_001087"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDV7382182.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4916..6019)
                     /gene="ychF"
                     /locus_tag="RJ272_001088"
     CDS             complement(4916..6019)
                     /gene="ychF"
                     /locus_tag="RJ272_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDV7382183.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(6016..7467)
                     /locus_tag="RJ272_001089"
     CDS             complement(6016..7467)
                     /locus_tag="RJ272_001089"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDV7382184.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYDDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPYLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7464..8060)
                     /locus_tag="RJ272_001090"
     CDS             complement(7464..8060)
                     /locus_tag="RJ272_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7382185.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8079..8627)
                     /gene="apt"
                     /locus_tag="RJ272_001091"
     CDS             complement(8079..8627)
                     /gene="apt"
                     /locus_tag="RJ272_001091"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDV7382186.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFAPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8624..8956)
                     /locus_tag="RJ272_001092"
     CDS             complement(8624..8956)
                     /locus_tag="RJ272_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382187.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(8956..9393)
                     /gene="rpiB"
                     /locus_tag="RJ272_001093"
     CDS             complement(8956..9393)
                     /gene="rpiB"
                     /locus_tag="RJ272_001093"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HDV7382188.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9558..10112
                     /locus_tag="RJ272_001094"
     CDS             9558..10112
                     /locus_tag="RJ272_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HDV7382189.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            10129..>10876
                     /locus_tag="RJ272_001095"
     CDS             10129..>10876
                     /locus_tag="RJ272_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HDV7382190.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFK"
BASE COUNT         3710 a         1559 c         1842 g         3765 t
ORIGIN      
        1 attttcttaa tttggttgtt ttttattcgt tttatatcgc ctatagcaat aattttggta
       61 atgtgttatc aaatttttgt ataataatga aaaaatattt ttttaaggaa aaataatggc
      121 taaaaaattc atcgatgtaa tggatacaag ctttagggac ggttttcagt ctgtttatgg
      181 agctagggtt ttaatggatg atttttttcc tgcagtagaa gcagcaaaag aagcgggtat
      241 tactcatttt gaatttggtg gtggtgctag atttcaaagc ttgtattttt atcttaatga
      301 agatgctttt accatgatgg atagatttag ggctattgta ggaaaagatg ctaatcttca
      361 aactttagca agaggagtca ataccgttac tttagatact ggaaatagtg aacttattga
      421 tttgcatgca aaactttttg caaaacacgg tactacaacg ataagaaatt ttgatgccct
      481 taatgatgta aataatttaa aatttagtgg tgaatgtata gtaaaacatg ggttaaagca
      541 tgaaattact attactttaa tggatttacc gtcaaattgc aaaggtgctc atgatgtgcc
      601 tttttatgaa aaaattttaa aagaaatttt aacagcagaa attccttttc atagtatttg
      661 tttcaaagat gcaagtggaa cttctaatcc aaataaaatt tataaaacca ttaaaatggc
      721 tagaaaaatt ttacctcaag atacacatat tagacttcat acgcatgaaa ccgcaggggt
      781 gagtatagct tgctatcttg cagcgcttga agcaggggtt gatggtattg atttggctgc
      841 agctcctgta agtggtggaa cttctcagcc tgatatttta accatgatgc atgctttaaa
      901 aggcaaagat tatgatttag gtggacttga agaagaaaaa attttaagat acgaagaagt
      961 tttaaaagat tgtttaaaag agtatttttt accacctgaa gctactatgg taaatccact
     1021 tattcctttt tctcctatgc caggaggagc tttaacagca aatacacaaa tgatgaggga
     1081 taataatatt ttagataaat ttccacaggt cattcatgct atgagagaag ttgtggaaaa
     1141 aggtggattt ggtacttcgg ttactccagt ttctcaattt tattttcaac aagcatttaa
     1201 taatgttatg tttgggcctt ggaaaaaaat cgcagaaggt tatggaaaaa tggtgcttgg
     1261 ttattttgga aaaactccag ttacacccga tgcaaacatt gttgaacttg cttcaaaaca
     1321 acttaattta gaacccacta cagagcttgc tattaatata gccgataaag atgagagtaa
     1381 aagcatagct tatactaaaa ccttgcttga aaaagagggt atagaaacga gtgaagaaaa
     1441 tatatttatt gcagcagctt gtaaagaaaa aggtatagca tttttaaaag gagaggcaaa
     1501 ggtaaatata cgcaaattag ctagcatgcc aaagcctatg agtgtagatg aaaacaaatt
     1561 tactgtagct gtaaatggta ataaatatca tgtggaagtg agttatggtt ttgataaaga
     1621 tgttaatgtt aagagtgtaa aaaaagtaga agaaaataaa aatattattt cttcaaattc
     1681 aacaagttct gtcgatgctg aaaatgaaat tttagcaggt atttcaggta atgtctttaa
     1741 aatttatgtt aacgaaggcg aggaagtaaa atcaggtcaa gctatcatgg ttttagaagc
     1801 aatgaagatg gagattgagg ttaatgcccc aaaagatgga attattttag agctttgtat
     1861 taaaataggt gatactgtta atgaaggcga agtattagct atttacaaga attaaagtga
     1921 gggaaaaatg aaaaaatttg ataagttagg tttggataat ataaaggaaa tttttcataa
     1981 tttaagttat gatgaattaa atgctcatga aaaagcaaat aatgaaggtt taagcacgga
     2041 taatgatact ttttgtgtag atacagggat ttttacaggt agaagtccta aagataaata
     2101 ttttgtaaaa caagatccat ctagtaaata tatagcttgg ggaaaggtaa atcagcctat
     2161 tacaaaagaa ttatttgata aacttttaac taaagcaaag caagaattaa gcggaaagaa
     2221 aatttatgtt caagatgttt tttgcggtgc ttctttgcaa agtcgcaaag cagtaagatt
     2281 tgttactgaa attgcatggc aagcgcattt tgttaaaaat atgtttattc gcccaagtca
     2341 agaggaactt gagaatttta aagcagattt tattgtttat aatgcttgca aatgcatcaa
     2401 tgaagattac aaacaagatg gtttaaattc agaggttttt gtgatcttta atgttgaaga
     2461 aaatatagcg gttattggtg gaacttggta tggtggagaa atgaaaaaag gtattttttc
     2521 tatgatgaat tattggttgc cactagaaaa taaactttct atgcattgta gtgcaaatgt
     2581 cggagaaaaa gacgatgtgg cacttttctt tggacttagc ggtacaggaa aaactacgct
     2641 ttcaaccgat ccaaaaagaa gactcatagg tgatgatgag catggctggg atgatgaagg
     2701 tgtgtttaat tttgagggcg gttgctatgc aaaaacaatc aatcttgatc ctgaatatga
     2761 gcctgaaatt tatggagcca ttaaaagaaa tgcactttta gaaaatgtag ttttaagagc
     2821 tgataagagt gttgattatg ctgatgcctc aaaaacagaa aacacgagag tttcttatcc
     2881 tatagagcat attgaaaatc atgagcctag tctaaaagca gggcatccaa aaaatattat
     2941 atttttaagt gcagatgctt ttggaatttt acccccggta agcaaactaa gcaaagagca
     3001 ggctatgtat tattttttaa gtggctatac agcaaaagta gctggaactg agcgcggtat
     3061 aacagagcct caagcaactt tttcagcttg ttttggagaa ccttttatgc ctttacatcc
     3121 aacggtttat gcgagattgc ttggtgaaaa gattgaaaaa catgaagtta atgtttatct
     3181 tgttaatacg ggttggagtg gcggaagcta cggtgtgggt aaaagaatga gcattaaggc
     3241 tactagggct tgcattaatg ctattctaga tggaagtatt acaaaatgcg aatttgaaaa
     3301 ttttgaagtg tttgatttag ctattccaaa agctttagaa ggtgtagaaa gtgtactttt
     3361 aaatcctata aatacttggt tagataaaaa tgcttatatt gcaacaagag ataaattagc
     3421 acatatgttt atacaaaatt ttaaacgtta tgaagatgtc aaagaaggca ttgaatttag
     3481 caaatttgga ccaaaaattt aaggcattta aatgaaaaat gaaatgtggt caggacgttt
     3541 tagtgatgca agtgatgagc ttttaaaaga atttaatgca agtttaaatg tagataaaac
     3601 tttgttcaat gaagatatac aaggttctat agcacacgct acaatgcttg aaagttgtgg
     3661 tattttaaaa aaagaagaat tagatgctat tataaaaggt ttagagcagg ttagaagtga
     3721 aatagagcaa ggtaaattta tttttgatat taaagatgaa gatattcata tggccgtaga
     3781 aaagcgttta agcgagatta taggtagtga aattggtgga agacttcata ctgcaagaag
     3841 tagaaatgat caagtggcta ctgattttaa actttttgtc aaaaaatctc atattgaact
     3901 tataaagctt ttaaaagaat tgattcaaac catgctcgaa catgctaaag tgcataaaaa
     3961 aactattatg ccaagtttta cacatttaca gcacgctcag cctgtgagtt tttcttttta
     4021 tattttagct tatgctttta tgttaatgcg agatattaag cgtttgcaaa atagcctaga
     4081 actcgcagac ttttcgccac ttggatcttg tgcatgtgca ggaacaagct atagaaccaa
     4141 tcgtgagttg agtgctgaaa ttttaggatt taaagatatt atgctaaatg ctatggatgg
     4201 agtgagtgat agggattttg ctcttgattt gctttatgat atagcagtta tttttacaca
     4261 cacatcaaga ctttgcgaag aaatgatctt attttcaagt tcggagtttt cttttataac
     4321 tataagtgat agcttttcaa caggaagttc tattatgcct cagaaaaaaa atcctgatgt
     4381 ttgtgagctt atacgtggaa aaacagggcg tgtttatgga aatttgattt ctcttttaac
     4441 tataatgaaa gctttacctt tagcctataa taaagatatg caagaagata aagaagggat
     4501 ttttgatagt gtaaaaaccg ctaaagatag cttaatcatc ttaaatgcaa tgctaaaaga
     4561 aatacaaatt aataaagaaa atatgcttaa tgcttgtaaa aaaggtcatt tattggctac
     4621 cgatttggca gattatttgg tgcgtgaaaa aaatattcct tttagaaaag cacattttat
     4681 agtgggaaat gttgttgcac aagctgaagc acaaggtatt gatataagtg aaattaaaga
     4741 tctttcaaaa atagatcctg tatttgatga aaaagctatg gaacttttaa attttgaatt
     4801 ttctttaaat tctaagcaaa gtgaaggctc aagttctatt gcaagcgtag aaaagcaaat
     4861 tcaaattttg gaaggtttta ttcaaaattt ataaatattg tttaggctat tttgcctaaa
     4921 cattgaatct aaagtgcatt acatcgccgt ctaaaacgat atagtctttt ccttcaaggc
     4981 gtagctttcc tgcttctttg gcgccatttt cgcctttgta ttggatatag tcttcatagg
     5041 aaataacttc agcttttata aagccttttt caaagtcatt atgaatcacg cttgctgctt
     5101 ttggtgcttt ccagcctttt ttgattgtcc aagaacgcac ttcaactaca ccagcggtaa
     5161 aataactgat cagtccaagc ttagcaaaag cagtgcgtat gatttgatca agaccgcttt
     5221 cgttaactcc tagagagctt aaaaattcat gactttcttc atcgcttaat cctactaatt
     5281 cttcttcgat ttttgcacaa agcttgataa cttcatgatc atttttttta gcatattctt
     5341 ttaaagcttt tacataatca ttatcttcac taataccatt ttcatcaaca tttgcaccat
     5401 aaatcacctc tttagcagaa agcagtctta attccttgat tagggcttga taaatttcac
     5461 tttccttttc aggataagaa cttgcagcta agcctttgtt taaatgatca agtaaggaat
     5521 ttgcaagttc gagactttct ttggcgccct tttgattggc tttggcttct ttggtgagtt
     5581 tttctatttt tttactcagt tgctcaatat ctgctaaaat aagctctgta ttgataattt
     5641 ctacatcacg taaaggatca actccacctt caacatgggt aatattttct tcatcaaaac
     5701 aacgtactat atgcaaaata acctcagttt cacgtatatt tgaaagaaat ttatttccca
     5761 agccttcgcc tttacttgcg cctttaacaa gtccagcgat atctacaaat tctattaaag
     5821 aatgcataat tctttcaggt tttactattt tagcaagttc attaagtctt aaatcaggaa
     5881 cttcaaccat ggctttatta ggctctatgg tgcagaaagg atagtttgca ctttgggcat
     5941 tttgtgcttt agttaaagca ttaaaagttg ttgatttgcc aacatttgga agtcctacta
     6001 tacctacgct taaactcatt tagctttcct taaaatttga attaaataat taacacacat
     6061 tctaactcca gctccacctg cgccaaaact agaatatccc caagattttt ctgtataagc
     6121 aggtcctgct atgtcaagat gtagccattt atctttatat tctttacgaa taaatttatc
     6181 taaaaataac cctgcggtaa ttgcacctcc gtagcgacta gaggcagtat tactaacatc
     6241 ggcaatattt gattttataa gttctcttaa gtaagggttg aaatgtaaga ttgtggtata
     6301 ttctccgctt tttttagagc ttagataaaa atcattttgc aattcctcat tatttcccat
     6361 aatagcactt gtaaattctc caagtcctac aacacaagct ccagtaagag ttgccatatc
     6421 gataagtaaa tcaggtttta aatcctgtgc aaaagaaaga caatcagcta aaaccaagcg
     6481 tccttctgca tctgtatttc ttacctctat gcttacacct tcacgactga ttaacacatc
     6541 atcaggctta taagcattgc cgcctatcat attttcagtt gcgcccaaaa tgcaatgcac
     6601 ttctaaatct aaagcaagtt cagctacggc ttttatgatt cccattactg ctgctgcacc
     6661 gcttttatca gctttcattg taagcataaa atcagctggt tttaagctta atccaccgct
     6721 atcgtaagtt aagccttttc caacaaatac aacacgtttt tttgcatttt tggctttata
     6781 gcttagatga atgaggcgtg gtgggtgtat cgaggcgcga tttaccgcta aaaaggcatt
     6841 cattttttct ttggctaaga atttttcatc ataaatttta caaataatgt ttttattttc
     6901 tttagctaaa ttttgcgcat cttctgccat ttttaaaggg gtgtaaattt caggaatttc
     6961 attgactata tttttagtaa aatttgtagc attagctaaa atttctccac gctctaaacc
     7021 tatcttagct tcatctttat taaatttctt accatttaat tcttcgcttg aaataataaa
     7081 tttttccaaa gtacttgttt ttttctcgct tttatatttg tcaaatttat aagctccaaa
     7141 aagtacgcct tcaactaaag atgcaaaact tctaactaca caatctccta ttatgctagg
     7201 aagttttacg cttttaatat taagtttctc aagagtttta tatgctgtgc aaagacttaa
     7261 tcttatatca tcataagcaa gacttttaag ctctaaataa agctttttat tgtttaagtc
     7321 taataatgca ccttcgcctt tgtaattatt aagtttaaaa aaatcttttt ctttgttaaa
     7381 aatttttaaa tttttatcct gtataaaaac aagttcaaag tctgctttta tagcatctag
     7441 ttttttatcg tttaattcaa atttcatgat tttttccttt tatctttaag tatagctttt
     7501 tccatttgtt taaaaccaaa taataaaagg gataaaaaag ctataataat aatggctgca
     7561 taataccaat gttcttcagc ccaagtcacc atcttccaaa tttgttctcc aaaataccaa
     7621 gctagaagta tagtgattga tgcccaaacc caagcactaa aaagattgat aatagcaaat
     7681 ttttttgcac tataacgcgt gattcctata ctcataggta taatggttct aaagccatac
     7741 atatagcgtt gtataaaaat aataggccaa ccaaaacgtt gtaaaagtag gtgtgctact
     7801 gcaaatttac gcctttgagt ttttaatttt ttttgtatgt agcgtttatt atatcttcct
     7861 atatagaaat aaatttgatc acctacaaaa ccaccaagtc ctgctataaa tataacaaaa
     7921 cctaaattta catgtccttg atgagcaaaa atacctgcta aaattaaagc taactctcct
     7981 tctaaaatgc accataaaaa aataataata taagctagat ctttgtattg gtaaagtaaa
     8041 ttttttaaaa attcttccat ttgtaccttt ctatagtttt aaatttctaa aacactataa
     8101 actgaagtaa gtttttcaag tttatttgct ccatttaaat ctttaagatt cattaaaaaa
     8161 caagcttcaa cacatttagc tccagctttt tgaatgagtt catatgaagc tatagctgtt
     8221 ccgccagttg ctattaaatc atctacaagt aaaactcttg cattttgaat atttttaaat
     8281 gcatctttat gaagttctac tttatcgctg ccatattcaa gatcgtattc gcagctaaag
     8341 gtttcaaaag ggagttttcc aggttttcta ataggtgcaa aaggaagatt aagttttgca
     8401 caaatcatag atgcaaagat aaatcctctg ctttctgttc ctgctatgaa gtctagattg
     8461 taatctttgt agcgttcttt taaatgtcta agtagaaaat ttaaagcttc tttgttattt
     8521 agtagagtgg tgatatctct aaaaataatt cctttttttg gaaaatcagg aataatccta
     8581 atgctatcaa gcagatattt tttttcttct tgtgttagtt ttatcataat aatgcctcga
     8641 tttttgcttc taattcttta attctttgtc ttagtttgtc attttccaag cgatattgag
     8701 aatttctggt tcttaaagat gtaaggtctg ctttgatttt attaagttct tctgtgagta
     8761 tatctatatt tccaagactt ctttgaagtt gaatttgtag ttttctaatg acaatctcag
     8821 tatcatcaag attgtttttg ataaaatctt ttgatgtttt ttctttatta agtagagttt
     8881 tatagtaaaa caacattaca ataagataga tagttgcaca aatcaatata gttaaaacaa
     8941 gccagtttgt aaacattata tttttacctc aattttttga attctttgca tatgtctccc
     9001 ttcttcaaaa ggagtttgaa tgaatttttc tataatatct atagctaatt caaccccgat
     9061 taatcttccg cctaatgcca aaacattggc atcattatgc cttcttgcaa gttctgcact
     9121 taagctttca tgacataatg cacaacgaat gtttttatga cgatttgctg caatagaaat
     9181 tccaattcca cttccacaaa taagaatgcc aaagcttcgt tcgtctattt tttcggcaag
     9241 taaatgtgca taatcaggat aatcgcagct tgcgcaagtg tttgttccta aatcgttaaa
     9301 aattatattt ttttctttta aaaatacgca aattttttct tttaattcaa aaccagcatg
     9361 atcactagca atataaattt tttccctaag cattggcttc ctaattacta tataaaataa
     9421 gataaaaacc taatcttatc atattaaatc ataaaaacag cttttctttt tttaaaaata
     9481 agctttattt ttctttatat atgttagaat catgtgacaa gaaaaataaa atttcaataa
     9541 attaagggga gaagaaaatg aagctcatac tcataggatc ttcaacaggt ggtcctaatc
     9601 agcttaaatt tcttttaaag gatattgatg taaaaaatac ttgtgtagtt atagctcagc
     9661 acatgagtgc cagttttatt ccatcttttg tggggcaatt taataaagaa gcttttagtg
     9721 aagtgtgctt attgaacgat aaagagatat taagcaataa aatttatatt tgccctaaaa
     9781 atactatttt atctggaaat ttaaatattg tagccgcttg gcaagatgtg gcttcaagct
     9841 ttaaaccgag tgtggattta ctttttcatt ccgctgtttc tttggcaaaa acaaataaaa
     9901 tacttgctat tattttaacg ggcatgggag atgatggcgc aaaaggttta tttgagcttt
     9961 ataaaacagg agttagatgt ttatgtgaga atgaagcaga tagcgtcgtt tatggtatgc
    10021 caaaaagagc aaaagatatg aatccgcatt taaaacctat gagcttaaaa gaaattaaaa
    10081 aagaaattgt aaattttatt gatcaggatt aataataagg aaaattgcat ggaaaaaaaa
    10141 ataactccta gcgaattgga acttaatgaa tttataaaaa ttatcaacga aatgagtggt
    10201 attgatttaa ccgataaaaa aaatatacta gctttaaagt tgaataaatt tcttgaagga
    10261 actaatacta aaaatttttc cgaatttttg ggaaaattaa aaagcaatag acaacttaaa
    10321 caagaaactt tagattttgt aaccataggt gaaacttatt ttttaagaga attggctcaa
    10381 ttgaaagaaa taatttatta tgccaaaagc ttagaaaaga gagtaaatat cctaagcgcc
    10441 ccttgttcaa gtggagaaga agtatattct ttggcattat tggctgcgca gaattttatt
    10501 aaagatatgt atattttagg cgttgatatt aattcaagtg tgattgaaaa agcaaaactt
    10561 ggaaaatatc aaggaagaac tttacagcga ttgagcgaga gtgaaaaaag aaggtttttt
    10621 ttagaaagcg aagataaatt ttatactatt aataaaaatg agctttgtac ttgtaaattt
    10681 gaactttgca atgtttttga agaaaaattt tcaagattgg gaaaatttga tattatagct
    10741 tctagaaata tgattattta ttttgatcat gaatcaaaac taaaacttat ggagagattt
    10801 catagaattt taaatgataa aggaaggctt tatgttggca atgctgattt aattccagag
    10861 actatttatt ttaaaa
//
LOCUS       DAPIWV010000059        10774 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.060, whole genome shotgun sequence.
ACCESSION   DAPIWV010000059 DAPIWV010000000
VERSION     DAPIWV010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10774
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.060"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            84..1127
                     /locus_tag="RJ272_001096"
     CDS             84..1127
                     /locus_tag="RJ272_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7382191.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
     gene            complement(1151..2500)
                     /locus_tag="RJ272_001097"
     CDS             complement(1151..2500)
                     /locus_tag="RJ272_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HDV7382192.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQSGNLIGEEGIKSLENLAKDED"
     gene            2603..3805
                     /locus_tag="RJ272_001098"
     CDS             2603..3805
                     /locus_tag="RJ272_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HDV7382193.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIINDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGF
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKDKK"
     gene            3802..4503
                     /locus_tag="RJ272_001099"
     CDS             3802..4503
                     /locus_tag="RJ272_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDV7382194.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEISYNSPNIID
                     RLSDPYSNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(4533..6977)
                     /locus_tag="RJ272_001100"
     CDS             complement(4533..6977)
                     /locus_tag="RJ272_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HDV7382195.1"
                     /translation="MERNIYEIELEIPNSGIFIMGLENENLIISLNIMKFIEINAEKI
                     ATLDGKLDVGGLAKPLHSYIIYEVLEKNNKNNFNDVKIIDKIEDENNIIYHFNFGLIL
                     NTFIGENEDNKDKEALKTLSFMQNFIPACFFSYQIIGDSKAIPKNVLEDLKNRYGYEG
                     KNYKSIFKKEVYINCNCLERLNFSHCEFESKVSLRFLKDNKYKEFHNGIDFSNCIFKN
                     EVDFSYFVSGAPLPDNKYYNNAQNTLFKDCIFENKVDFHNSKITNNIYFNNAHFKDYV
                     DFHECEFEKTVNFYGVIFEKAPNFSACYFKEPKAVNLINVDIDKLDFKSLEQYIKDKY
                     QDESYKNETKGIQDEKEIFKIQNEHQLRYAKNLKDSFRVIKDILITQNNTLEAQEWHK
                     LELYAKEKELLFEVESCYKEKNKPFIAAKSEDKNSINLTFSVLLLWIYRVTSLHHTNL
                     PRIINFASLNIVAFGGLVCLITYLSYHINKQSNFWLFGVLILFALIIGIVSLLLKKQK
                     LKNITLILCLFLAFLLALFLMQRIAFLSSFGDIIFALLFYCLLVIVLIYLYPYINLKS
                     FISYCFNWLVYFFLVMIVVIKPQLINPFAGIFSSDKLYESQFEKSLNDLNVSAIMILT
                     DISQDNFNLPSKDQNISFVELNSAKALIIANKEKLKEILSKVYNDKYVSDYKKVLNEL
                     ENNTSNVKNIIEEIDNKNNNSVISVQLNQILNFNFSQEIDILYMIKSNFFISEKLSPE
                     QMAIFDQKDSQDKLKSVLALLKFKSSFEGILKIINQDEITENTIKSTSVLYSIMLLLC
                     IFSLQKTARKNSIVPS"
     gene            complement(6977..10747)
                     /locus_tag="RJ272_001101"
     CDS             complement(6977..10747)
                     /locus_tag="RJ272_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002879698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7382196.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLNEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKNISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNIMLSIYDELNLFDEEFYLEVQNDEILIT
                     NHKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLSHYPNIKERINKYK
                     RIVKDYKEGFYTDKSRINQEIKNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIKEAENKELFTNTKKLRTYQGKMDIWYHFVGRGFDILKN
                     NGYLAFIATNNWVTNSGAKKLRNIVLEESQILSLVDFSSFMVFDSASIQTMIMQFQKI
                     KPPKNYEIHFSKITTQTPIYDDAINLLKNEKTQNNEILKINLTPKKFIDKTLNFTKSD
                     YEELFNKIQKYGKFYLEEREVAQGIVPNPDIITKRNISDEMVSKGIKVGDGVFVIEKD
                     FLNVCEYEKKYLKPLYEVEHFGKYYFNKNNSKQLIYTTKNNSKKENIPTIIKHLQKFR
                     SIMDNRRENLNKRLDFYHLHWARDERFFESGEKIVSVRKCIEPIFSYLNNEAYVMLSL
                     NVIKTQRINVKYLTGLLNSKLVAFWLKHKGKMQGNNYQIDKEPLLNIPIVDTNSKNEK
                     LADELINLVDEILKAKEQDKNANTQELENKINSIVYKLYNLTEEEIKIIEGK"
BASE COUNT         3423 a         1668 c         1545 g         4138 t
ORIGIN      
        1 tttaaattat tcttattatg cttaatattt aagaaaaaat acattaaaat caatttgaac
       61 tgcaaataaa aaggaggaaa atcatgaaaa aacacatttt attgcttggc ttatgtctta
      121 gtttgagtct tagtgctaaa agcgtgagtg attacaaagt aggagaagaa ttaagcgaca
      181 aggaaggagt agagtatttt aaggagcttt ccaaaagacc tgtgcaagaa tggccaaata
      241 aaaatttaag catcaatgat gttccaaaag gcaagcaagg ggatttaatc cgttatggca
      301 tagagctttt aagcaagaca gaaagtactt taggacccta tagcaagcta aaaaagacaa
      361 gcaacgaagt aaattgtatt tcctgtcaca tggacaatga cggcaatggt ttgccaggga
      421 caaaaaaata tgttattcca tttttaaatg tcctaaacaa ttatccaaga cttgacatag
      481 aaacgatgaa aatcatctct gttgaagata gaattcgcgg aatgggcgga actgactctc
      541 atagatttcc taatgattct aaagaaatga aagcaatttt agcttatttt aaatggctaa
      601 aagaagctta tggcatcaaa gacggcgtaa agcttgaagg agattttttc gctaagatga
      661 attttccaaa tcgcccagct gaccctgtgc gtggaaaaaa actctttgaa gaaaattgcg
      721 ttgcttgcca tggcgaaaga ggacttgggg taaaaaatga taattacgaa caaggtagcg
      781 gacatttata tccatcttta cttatctatc ctgatggtgg acacatggct atgataccat
      841 ttttagcaag atttttaaaa tcagccatgc cttttggtgc gagtgcagat aatcctatat
      901 taagcgatga agatgcacta gatatagcag cttatgtcaa tacaggtttt gtaagaatgc
      961 ctataaccac tacagaaaat cgtgcaggac ttgatacagc ttatagcaaa tccccttcat
     1021 taaaacctga gtattttgcc tcaccacaac aaaatttaga ccctaaagaa tacataaaag
     1081 taaaatacgg accttggaaa aatccaaatc acttcccagg agaatgatta attttgggct
     1141 tagcccaaaa ttaatcctca tctttggcta aattttcaag acttttaatc ccttcttcgc
     1201 ctatcaaatt tccactttgt aagtcgctaa atatcgcatt taaagaactc actatggcag
     1261 tggaattaaa acttagattt tctatagctc tttctctttt tttccatata ttttgcaaag
     1321 cccttttttc agcttctaac tcttctttca tattttggta agttttgagt ataaaagtga
     1381 tttgcgtgtt aaattcctta gaatttaagt attcgtataa aatgtgattt ttttcatctt
     1441 tgttttgcag ggcatttttg agtttataag cgtttataat gctttctcta agcactgcta
     1501 aaacaccttt gaattcatta aaagtacaga tcaaaattcc ttctttaaaa tgcgtttttt
     1561 ctttatcttt tggcatagtt tttgtgatca aaaccgctat atcacttttt gcggctatac
     1621 tgtctagttt aagtttatca agccattctt tattaaattc tttagtgcgt ttgctctcat
     1681 acaaaatact tccgcaaata tttccaaaat tatcctttac tatatgcaga caatcagctc
     1741 catttacgcc ttttggcact tcttttactt catcgcttaa atactcactt tgtatgtatt
     1801 cttctatgag tagttcggct gcttcgcctt ggagttgctg tgagccttgt tctatcctgc
     1861 gttgtgcgtc ttctagcttt tgagctacac ttttaaaatt cgtttctagt tctttgtatt
     1921 taagatcttg ctcttgagta cttttttgaa attcaagacg cattttttct ctttcaaatt
     1981 ccaaattttt gctttcttgt tctttaaatt ctttaaaagc ctcttctttg gcttgaaatt
     2041 tcaatctttc ttcattttct ttttgctctc tttttagcct ttcattttca gcctttatgc
     2101 ttaaaaactc gctaagttct ttgctttttt tctcgagctc ttcttgcatg attttcattt
     2161 cattttcatg ctctttgtta aatttctcgc tgaattcttt ttggaaattt tgcttttgta
     2221 taagaagttc ttgttcaaat ttttgctttt ctaaaagaag cttttggctt acttgctcgt
     2281 ttatgagttt ttcttgttct atcttttgag tttttaaatc atttaaagct ttggtatatt
     2341 cagctctttt agcatttacc tcatcatcaa attctttttt ttgttttagc atttcttgct
     2401 tagctttatc taaaatttga gcatataaag cagtgctgat atcgataaaa cttccacaac
     2461 ttgggcattt gatttgttca ttttggttta aattttgcat aaaatttcct tagaattttt
     2521 ccctaaattt aacatagaaa aacaaagatt attctaagat tgacttgtta aaatcattct
     2581 tttagaataa ttaggattgc aaatgcaaaa acacaccaaa attcacggct ttgctaaatt
     2641 taaactcatc gttatccttg ctttgatgtc aagcatagca ccgctttcta cagatatgta
     2701 tttgcctgca ctttctcatg tggagcaaag ttttcaaact aattcttttt taacccaact
     2761 tagtatcgca agttttttta tcgcttttgc tttaggacag cttatatatg ggcctttaag
     2821 tgatattttt gggcgtaaaa ttccagcttt ggtggggata tttttcttca tcgtttcgag
     2881 tttgttttgt gtgattatcg atgatattta tgcttttatc gctttgagat tttttgaagc
     2941 acttgggggt tgtgcaggtg tggttatcgc aagggctatt atcaatgact tgtttgagat
     3001 caaagaagct gcagggattt ttgctttgat gatggttttt agttctcttg ctcctatgct
     3061 ttcgccaact tttgggggat ttttgttaga gtatttttca tggcatagta tttttgcgac
     3121 tttgtttgct ttgggaattt tgcttttttt gatgatactt tttggtttaa aagaatccgc
     3181 acctcatctt aaaaacaaaa aattttccca tcatgaagcg atgaaaagct acaaatttgt
     3241 tttaagcgat aaacgctttt tggtttatat actatgtgct tcttttgctt tggcggcgat
     3301 gtttgcttat atcacaggat caagctttgt ttttacgcag ttttttagct taagtgagca
     3361 aaaatttgcc ttgctttttg gggcaaatgc tttaggtttt gtcatctgtg caaatatcaa
     3421 tgcgagattg gttttaaaat acgaaagcga aaaaattttg gcaaaagctt tgatgataat
     3481 gtttatatcg accgtgattt tacttgtaaa tgcctttttt catccaaatt tcttgctttt
     3541 tgaacttagt atttttacaa gtatcgctat gcttggtttc atcgcaccca ataccacgac
     3601 tttagctatg gcaaggttta aagaacatag cggaactgct tctgcggtgc ttggaacggt
     3661 gcaatttggt tttgcaggac ttatttcttt tgtggttggg gctattaacg caaatacgcc
     3721 gataatcctt gcttttgtaa tgtgtgcttg cgtattggtt gcaaatatga tatattttct
     3781 aatcaaaata aaggataaaa aatgaaaaca aataatatct ttatggcttt agccatagtt
     3841 ttggcaagtt tgattctagc ttttggattt aacaaggctt taagtgattt taaaacactt
     3901 gaaagaagtg taagtgtaaa gggtttaagc caaaaagaag tcgaagcgga tactttgata
     3961 cttcctataa aattcacaag atcaaacaac aatcttacaa atttatacga agaactagaa
     4021 caagataaag aaaatatcat caaattttta aaagaacaag gcgtaaaaga agatgagatc
     4081 agctacaact cgccaaacat catagatcgt ttaagcgatc cttatagcaa cgacactcaa
     4141 gctacatacc gatacatagg cactgcgaat ttactcatct atactcaaaa tgtaaagctt
     4201 ggaaaaagca tactagaaaa catttcaagt cttgcaaaat ttggtatagt aacaaaaatc
     4261 gatgattatg atatagaata cctttacacg aagctaaatg agataaaacc acaaatgata
     4321 gaagaagcaa cgctcaatgc tagaaatgca gcgataaaat tcgcacaaga ttcaaacagc
     4381 catctaggca agataaaaaa ggcttctcaa ggacaattta gcatcagcaa cagagataaa
     4441 aatacccctt atatcaaaac cataagagtg gtttctacta tagaatacta cttaaaagac
     4501 tgatgatgaa atttcaagct aagctttaag gcctagcttg ggactatgga attttttcgt
     4561 gcggtttttt ggagcgagaa tatacaaagc aaaagcataa tgctatataa aacactggta
     4621 gattttatgg tgttttctgt aatctcgtct tgatttataa tctttaaaat cccttcaaaa
     4681 cttgatttaa atttcaaaag agccaagaca ctttttaatt tatcttgact gtctttttga
     4741 tcaaaaatag ccatttgctc aggtgatagt ttttcagata taaaaaaatt actttttatc
     4801 atatataaaa tatctatttc ttgactaaaa ttaaaattta aaatttgatt gagttgaaca
     4861 gatataacgc tattgttgtt tttattgtct atttcttcta tgatattttt tacatttgat
     4921 gtgttatttt ctagctcatt taaaaccttt ttataatcac ttacatattt atcattatac
     4981 actttagata aaatttcttt taatttttct ttatttgcta ttatcaaagc tttagctgaa
     5041 tttaactcta caaaagaaat gttttgatct tttgaaggaa ggttaaaatt atcttgcgaa
     5101 atatcggtta aaatcataat agcactaaca tttaaatcat ttaaactttt ttcaaattga
     5161 ctttcataaa gcttatctga tgaaaaaatt cctgcaaaag gatttataag ttgtggtttt
     5221 ataacaacaa tcataaccaa aaagaaataa acaagccaat taaaacaata agatataaaa
     5281 gattttaagt ttatataagg atacaaataa atcaaaacaa tcaccaataa acaataaaag
     5341 agcaacgcaa atataatatc accaaatgag gataaaaaag ctatgcgctg cattaaaaac
     5401 aaagccaata aaaatgccaa aaaaagacat aagattaatg ttatattttt taatttctgt
     5461 ttttttaata gcaaactcac aattcctata atcaaagcaa aaagaatcaa caccccaaaa
     5521 agccaaaaat tgctttgttt attgatgtga tagcttaagt aagtaatcaa gcaaaccaaa
     5581 ccaccaaacg caacaatatt taaactagca aaattaataa ttctaggcaa atttgtgtga
     5641 tgaagacttg taaccctgta aatccacaac aacaatacac taaaagtaag attaatagaa
     5701 tttttatctt ctgatttagc agcaataaac ggcttattct tctctttata acaactttct
     5761 acctcaaaca atagttcttt ctctttcgca taaagttcta atttatgcca ttcttgagct
     5821 tctagggtat tattttgtgt gattaaaata tcttttataa ccctgaaaga gtcttttaaa
     5881 tttttggcat atcttaattg gtgttcgttt tgaattttaa aaatctcttt ttcatcttgt
     5941 attcctttgg tttcgttttt gtaactttca tcttgatatt tatcttttat atattgttcc
     6001 aatgatttaa aatctagctt atctatatcg acattgatta aatttacagc ttttggttct
     6061 ttaaaataac aagcactgaa attcggagct ttttcaaata tcactccata aaaattaaca
     6121 gttttttcaa attcacactc atgaaaatca acataatctt taaagtgagc attgttaaaa
     6181 taaatattat tggtaatttt agaattatgg aaatcaacct tattctcaaa aatacaatct
     6241 ttaaataatg tattttgtgc attattatag tatttattat caggcaatgg tgcacctgat
     6301 acaaaataac tgaaatcaac ttcattttta aagatacaat ttgaaaaatc aattccattg
     6361 tgaaattctt tatatttatt atcttttaaa aaacgcaaag atactttgga ttcaaattcg
     6421 caatgagaaa aatttaatct ttctaagcaa ttacaattta tataaacttc tttcttaaaa
     6481 atacttttat aatttttccc ttcataacca tatctatttt ttaaatcctc aagaacattt
     6541 ttaggaatag ctttggaatc tcctataatt tgataagaaa aaaaacaagc aggaataaaa
     6601 ttttgcataa atgagagcgt ctttagtgct tctttatctt tattgtcttc attttctcct
     6661 ataaatgtat ttaatatcaa tccaaaatta aaatgataga taatattatt ttcatcttct
     6721 attttatcta taatttttac atcattaaaa ttgtttttat tatttttttc taaaacttca
     6781 taaatgatat atgagtgcaa tggtttagct aatcctccaa catctaactt tccatctaaa
     6841 gttgcaattt tttctgcatt aatttctata aatttcataa tatttaaaga aataattaaa
     6901 ttttcatttt ctaaacccat tataaaaata ccgctatttg gtatttctag ttcgatttca
     6961 tatatatttc tttccattat ttcccttcta tgatttttat ttcttcttcg gttaagttat
     7021 agagtttata aacgatggaa ttgattttat tttctaactc ttgggtgttt gcgtttttgt
     7081 cttgttcttt ggcttttaaa atttcatcga ctaaatttat aagctcatca gctaattttt
     7141 catttttaga atttgtatcc actatgggaa tatttaacaa aggctctttg tcgatttgat
     7201 aattattgcc ttgcattttt cctttatgct ttagccaaaa tgcgacaagc tttgaattta
     7261 aaagccctgt taaatatttc acatttattc tttgtgtttt aataacattt agacttaaca
     7321 ttacataggc ttcattgttt aaatatgaaa agattggctc tatacatttt cttacactta
     7381 ctattttttc tccactttca aaaaacctct catctcttgc ccaatgcaaa tgataaaaat
     7441 ctaatctttt atttaaattt tctcttctat tatccataat agatctaaat ttttgaagat
     7501 gtttgattat agtaggaata ttttcttttt tgctattatt ttttgtggta tatattaatt
     7561 gttttgagtt atttttgtta aaataatatt ttccaaaatg ctcaacctcg tacaaaggtt
     7621 ttaaatattt cttttcatac tcacaaacat ttaaaaagtc cttttctatc acaaaaacac
     7681 catcacctac tttaatccct ttagatacca tttcatcgct aatatttctt tttgtaatta
     7741 tgtctggatt aggtactatc ccttgtgcga cttccctttc ttcaagataa aatttcccat
     7801 atttttgaat tttattgaaa agttcttcat aatcactttt tgtgaaattt aaagttttat
     7861 ctatgaattt ttttggagtt aaatttatct ttagaatttc attattttgg gttttttcat
     7921 tttttaagag atttatagca tcatcataaa ttggagtttg ggttgtgatt ttagaaaaat
     7981 gaatttcata atttttaggc ggttttattt tttgaaattg cattatcatt gtttgtatac
     8041 ttgcagaatc aaacaccata aaagaactaa aatcaacaag gcttaaaatt tgggattctt
     8101 ctaaaactat attgcgtagt tttttagctc ctgaatttgt aacccaatta tttgtagcga
     8161 taaatgctaa atatccatta ttcttaagta tatcaaatcc acgccctacg aaatgatacc
     8221 aaatatccat ttttccttga taagttctta acttttttgt attggtaaaa agttctttat
     8281 tttcagcttc ttttatataa ggcggattgc cgatgatgag atcaaagcct ttgaaatttc
     8341 catcatcgtc taaaatttca gggaattcaa aacgccattc aaaaggatga ttgctttcta
     8401 gattaaagat attgtcgtat tcttttttaa gatttgcaaa ttcttttgtg gcttcttttt
     8461 catcaaagtc aaaaagagtc aaattcgcac taacaaagaa tttcaaattt tcatcatcta
     8521 cggctaagaa atttccatat tttttagagt atttttcaca tttatcatta aagcttttca
     8581 tttctttttt aaatttatcc gcaaagcaga aatttttaaa agaaattttg agatttttta
     8641 tctcttggtt gatgcggctt ttatctgtgt aaaagccttc tttatagtct tttactatgc
     8701 gcttgtattt gttgatgcgt tctttgatgt tagggtagtg gcttagactt ttgcctgttt
     8761 caaagtaaga taccaaagaa tttccgcatt ttatgtttat atcgatgttt ggcagggttt
     8821 taagatcgtg ataattctca tcatcaaagc tttgataaaa actatgtttt aaaagctcta
     8881 tccaaagcct tagcttggtg atctcgcatg agttagggtt gatatcgaca ccaaaaaggt
     8941 tgttttctat gatgtctttt ttggtgtgaa aaagttcttg ttggataaga tgggctttat
     9001 ctttaggcgt acttgggcgt ttatactcta taaactcgcc tttatgattg gtgattagaa
     9061 tttcatcgtt ttgcacttct aggtaaaact cttcatcaaa aagatttagc tcatcataaa
     9121 tgcttaacat aatatttaaa gcagaaacta aaaaatgccc acttcccact gcaggatcgc
     9181 aaatttttat agagtttaaa agctcttttt gtgctttttt gtcttctttt cttaaagact
     9241 ttcttagttc gcttatattt ttagcatcaa gatcaaattg agcgttgaat ttatcaagca
     9301 caactttcgt gatgctttct ttacacatat aagaagtgat aaagcttggc gtgtaaaagc
     9361 tcccttcttt gtagccattg agtttttcaa acacatttcc caaaacgctt gagcttatga
     9421 gttctttttg gcttaaaatt tcgctttgct catcatcact accaaaatca aagctatcca
     9481 aaaattcaaa caagtattcc aaaagcccca cttgtccttt tttagccttg catttatcat
     9541 cttttagcac ggtgttttta tagtaaaaaa gctttaagtc attgcttaag cttgaaattt
     9601 caagtgtgtt ttctatgctt tgtttttcaa acaaagaaga atttagataa ggcagatagg
     9661 caaattcgct tttctttctc gtgctttttt ctttggctaa gacttcaaag aaaagttcgc
     9721 taagcttgtc aaaatcaggg atttttttga aatttaaaaa tttcaaattt ttatcatcat
     9781 taaaacgcac caaatttgac tctataagct ttaaaaacaa aatgcgatta agccataaga
     9841 tcaaaagttt taagatggtt tcaaaatttt cttctttaag cttagaattt atagcggtgt
     9901 agaaagtgcc ttgctcttct ttgctttctt cactttttgc gatgatgagt tttgagtttt
     9961 gtttgctctc acaaagccct aagatatata aaagctcttt gtaaaaagca ttgttgagtg
    10021 aatttgcatc gttggggtta aactcattta gcaaaaagtc tctatgaaaa gttttataaa
    10081 tacttgctag gtttttaaaa tttgattttt gtttgtcttt taaaaatgtc aagtcaatca
    10141 aaaagccttt taagttttct ttggaatttt ctatgagttt ggctacttct ttatagaatt
    10201 cttcagtatt acctttgaaa agtgaatttg gattacaaaa ttcttcaaaa agttttttaa
    10261 aacttggatt tttataaaaa agctcttcaa actcactaat tttaaaaatg taaaatttat
    10321 aaaaatctgt gatgataata aattttaagc taaaactata ctctctattt ctaaaataat
    10381 ataaaatagt ctcgtgtaag gctttagaat ttacctttgt atgagtgata aattcttttg
    10441 aatttggctt tttagcctca ataagaactt ctaagtcttt actaaactca tctttagaga
    10501 tggataagtc aatctcactt ttgccttttt gcttggtttt gatgtgagtt ttgaaattta
    10561 acatggttaa aaatggacta agtgcattag ctacaagata atcttcattt tcactttgcg
    10621 aactttcaag tctttctaga tattgcatta aagccttgtt aaatatatca aattcatttt
    10681 gcatgatttg ctttttgcgg tagtatgggt tgaaaaaatc tttttcattt agcaaagtga
    10741 aatgcatttt taacctttat aaaaaatatt ttgt
//
LOCUS       DAPIWV010000060        10527 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.061, whole genome shotgun sequence.
ACCESSION   DAPIWV010000060 DAPIWV010000000
VERSION     DAPIWV010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10527
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.061"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(180..2432)
                     /gene="flgL"
                     /locus_tag="RJ272_001102"
     CDS             complement(180..2432)
                     /gene="flgL"
                     /locus_tag="RJ272_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HDV7382197.1"
                     /translation="MRITNKLNFTNSVNNFMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            2614..2700
                     /locus_tag="RJ272_001103"
     tRNA            2614..2700
                     /locus_tag="RJ272_001103"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2648..2650,aa:Leu,seq:caa)
     gene            2711..2785
                     /locus_tag="RJ272_001104"
     tRNA            2711..2785
                     /locus_tag="RJ272_001104"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2743..2745,aa:Gly,seq:gcc)
     gene            complement(2816..4747)
                     /locus_tag="RJ272_001105"
     CDS             complement(2816..4747)
                     /locus_tag="RJ272_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7382198.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEKYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFAKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(4751..6040)
                     /locus_tag="RJ272_001106"
     CDS             complement(4751..6040)
                     /locus_tag="RJ272_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7382199.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKNFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFILMLLLGRRI
                     EKNFNKILDFLDSIGDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKI
                     TLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLN
                     ALTHKLNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQ
                     VIINLLSNALKYSQKKVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSF
                     GLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            complement(6034..6696)
                     /locus_tag="RJ272_001107"
     CDS             complement(6034..6696)
                     /locus_tag="RJ272_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7382200.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            complement(6683..8266)
                     /locus_tag="RJ272_001108"
     CDS             complement(6683..8266)
                     /locus_tag="RJ272_001108"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDV7382201.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(8263..8751)
                     /locus_tag="RJ272_001109"
     CDS             complement(8263..8751)
                     /locus_tag="RJ272_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382202.1"
                     /translation="MKKYITMSILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(8751..10421)
                     /locus_tag="RJ272_001110"
     CDS             complement(8751..10421)
                     /locus_tag="RJ272_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDV7382203.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEAATEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSAKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
BASE COUNT         3318 a         1868 c         1312 g         4029 t
ORIGIN      
        1 aatacccaaa ttctccaaat aaaaataaat tagccttgta aacccattct cccatgccag
       61 gtgctagcat acaaagacaa agataaaaaa taacaagcgt ggagctggta aaaatggctt
      121 cttttttaat attctttcct tgaaaataaa atcaaagcca aattatacca taaaaaattt
      181 tacatataat ttaataagct aagttgagaa attgttgtac tagctttaag agaagcttga
      241 tatgcaagtt gaacttgcat taaattcatc attgcctcac cataatctac atcaatcaca
      301 tttgatttta tactttggac attaacgctt aaaaatgatg tgcgtgtatt aacaccttcg
      361 atagtattat gatatgctcc catagttgta ttaagcttgc taacatgatc tgctaaatga
      421 tcaagtcttt ctaaagctcc ttgcatacct gtatttctag ggttttcact ttcggagtct
      481 gctctcatat tgccttttaa aacagcatca atcattgaat ctaaatcttt aataatatcc
      541 acatttggct catctatagt taaagaatta ttcgcgctaa aactaaaatt tggaccattt
      601 tgtacagtag aagttgtggt aaaaggaggt gctggaaatt ggccactttg agaatcacta
      661 agagaaattt ctatattggt tcctgatgaa agtttatcag taacactaat acgaccttta
      721 taatccatac ttacatcaac agtagcttgt gaatctttca tgagttgttg tatttgggta
      781 taatctgcat tattaatttg accattattg gcttgtatgg ttgttgtagg aattttatct
      841 gcagcaaaca tacctataat atcattaatt tgaccataag taatatcatt tgatcctgta
      901 acaaccccac tatttccagt tgcaggatta gtatgcataa taggaaagct tatggtttga
      961 cctggattat taggatcagg atagcttaca gttgaagttt gtaaatttat agtaacatcg
     1021 taagaatttc cacctttgga attgactttt aaatttaaag tagtaccatt taggctatct
     1081 cctgccatta cctcgctaag tttggttgaa tcagtggcat aagcattgct tcctttgata
     1141 acttgagaaa cattaccata aacagtattg ccattttttt caaaatacac attatcgtaa
     1201 tcagctccat tagcagcatt tccatctgta tctgtcattt tacttttgat aaaatcagtt
     1261 tgttttaaat caatttcaaa gttttgtccg ttaatttgaa tggttacagg attatttaaa
     1321 tttgtaatat ctccattatt gggatttcct agtgcagcag tcataaccct gtttgtaaca
     1381 tcttccattg taatgccttc atcctgtgct gcttggataa tattatttaa ttcagtttta
     1441 tcatcagctt gtggtgtgaa agctacagca tgaaaatcga gtttattatt accttgcttt
     1501 agatctgtaa tttgaatttg accactatca ttcatactta cttctactac tttattattt
     1561 ggagtattac cataaagagc tccaatattt tccattacat cttctaaagt atcttcgggt
     1621 ttgacgagta cagcactttt aaaacttgtt ccatcgggtc ttgtaccttg aacataaaga
     1681 gttgttggag gaaaatctag tttgctatca tcatactcaa agtctttgtc agcatctaag
     1741 ctattatctt ttacataacc ttgtccgata agttgttgcc atttagaatc tcctgtgaga
     1801 tatttagttt tatcagggtc tttatttaaa tcccaacgat tatctgtaaa actaacatta
     1861 gtgcttattt gttttttata gtctccatct gctttaaaaa ataaatccca acctggtata
     1921 ttgtatgggc tttcagttcc agctccagtt actacattaa tattattttt atctccataa
     1981 taatttccat tagaatcaaa aggtttgttt gcaacttgag aacctgcaaa aagatactga
     2041 ccattaacac tggtatttgc aagctgaact atgctttctt ttatacgttc tagttctttt
     2101 gctatagctt ctcttgaggt ttgagaattg ctatcgcttg cagcttgggt tactttaact
     2161 ttaaaatctt caagaagttt aaccatatct tgtaaagctt tcatactatt ttgagtcatt
     2221 tcttgagctc tacttgttga ttcttttact tgttctaatg ttttaatttc atattcaaga
     2281 cgcgtattat ctatataagt gcttgcatct tcatatgaat tttgtatttt caaacctgaa
     2341 gcaagttgtt gagatatctg atataaagca ctttgaccgc ccataaaatt attcacacta
     2401 tttgtgaagt taagtttatt tgtaattctc atttttttcc tctaaagtat taaagttaaa
     2461 atcttttcaa acattgctaa taaacaaaag caataactgt tccaaaaatt taaattatat
     2521 aattttatat tgtctttttg aaaatacttt ttatttttaa agtatttttt agcctaaaaa
     2581 agtataattt tagctttaaa tcttataaaa tgagcccgag tggtgaaact ggtagacgcg
     2641 ccagactcaa aatctggtaa gggcaacctt gtgtcggttc gagtccgacc tcgggcacca
     2701 cttatttttt gcgggaatag ctcaggggta gagcacaacc ttgccaaggt tggggtcgcg
     2761 agttcgaatc tcgtttcccg ctccatagag taaaaaaaat ataaaatctc tttaattata
     2821 aattctcgct tttctctaat actaaaaaat actcattttc tagaatttca agttcttttt
     2881 gcattacttc aagctcttga taaagcttgt taatacctat ttcttgatat acatttggat
     2941 cggataaatc ttgatttaat ttagctatct tttgctctaa aaaatctatt ttttcaggat
     3001 ggttttttaa tatctcattt tctttgtagc tcaatttttt ggagcttttt tctttttggt
     3061 tattattttg ctcttgggtt tgaagctcta aagcaaaatt atccaattct tcaatttctt
     3121 tttcattttc aagatattca gtataaagag tgtgtaaaat atttatatat ccatttccct
     3181 caaaagcata aagttttgtt gcgattttat caacaaaata tctatcgtgt gatactagca
     3241 aaatagcccc ttcaaaacta agtaagtatt cttctaatat attaatcgta gctatatcaa
     3301 gatcattagt tggctcatct aaaatcaaaa catcatattc tttagcaaaa agcaaggcta
     3361 aagcaacgcg atttttctct ccgccgctta aaagagccac gcttttatct aaaaattcct
     3421 taggaaatag aaaatttttc aaatatccat aaacatgcat atttttacca cgaacttcaa
     3481 ccctatctcc accattggga caaaaaattt caagcaagct tttatcagaa tttaccaagc
     3541 ttctagcctg atcaaaatat cctatcttaa gctctccgcg ttttatttca ccgctatctt
     3601 gttttatttg ccctagaaga atttttaaca atgttgattt tccacaacca tttcttccta
     3661 cgatagctat gcgttcacct tgtaaaatac gcgttgaaaa atctttaaaa agatttttat
     3721 tgtttatatt tttgcttata tttttaagct caaaaagcat ttttttacga ttgatcgttt
     3781 tttctccatt aaaatttaaa gccgctcttg aaatttcaag ttttaagcgt ttgattgccc
     3841 caggattttt tttcgcttct tcacgcattt taaaaatgcg ttcttttcgt ccttcatttc
     3901 ttttaagtct tgctttaacc cctcttctaa gccattcttc ttcgcttttt aattgcttta
     3961 aaagagtttc atggctctta gcaaggcttt gcaaaatttg tgtttttttc tctaaatagt
     4021 ttgcatatcc gcctttaaaa atactaagct taccctgctc tacttctaca cacttgtgtg
     4081 ctatagcgtc aataaaatat ctatcatggg aaataaaaat cacacacatc tttgaatttt
     4141 ttagcaattc ttccaaaaag cttgtcatat atacatctaa atgattagtt ggttcatcaa
     4201 gcaataaaat atcaggattt tttagtaaaa gtatgcaaag cccaacgcgg cgtatttctc
     4261 caccacttaa agtagatata atgcgatttt catactcaag taaactaaat tcttttaaaa
     4321 cgcgtattat tttagattct atactccaag catctttact atcaatcaaa gtcataagcg
     4381 tatctatttt ttgaagataa tctttattac taggatcttc ttctaatttt ttatgcagta
     4441 tttcatattt ttctaaggta ttgtaaattt ctacaagctc ttgcttgatg gcttctttta
     4501 cgcttaaatt tgcattaaaa tcaacggttt gtgaaagcat ggctatgctt tttccatttt
     4561 gtcttattat tctaccgcta tctaaaggaa gtgtgcctaa aagcgttttt aaaaaagtag
     4621 attttccttc tccatttttg cctataatag caatcttttc tccctcgttt gcgctaaaat
     4681 ttacttcatt taaaactatt ttgtctccaa atttttttga agcttcaatt aaatctataa
     4741 gagccatttt ttatccttga ctgagtttaa agctaaaact agaaccataa cctaaagtgc
     4801 tagaaatttc aagataactt ttatgtatat ttaaaatttt ctttactaaa aaaagtccca
     4861 aaccaaaaga attatcactt tttacatcaa ttttataaaa tttttttgta atcaatttta
     4921 ttttatcttc ttctatgcct tttccaaaat cttgcactat tatcttttga tctcttgccg
     4981 ttaaaatgac ttttttttga ctatatttta aagcattaga aagcaaattt ataatcactt
     5041 gctcgattaa aaattcatca gccttaactt tcgtgctttt accttgcaat gcaactcttt
     5101 caaagcctgg gtttttagtg attttttcac atagagaaaa aagatcgaat tcttgcatct
     5161 gcaaggcttc actattaaga ttaaaaacaa aattaagctt atgggttaaa gcattaagtt
     5221 taacgctttg acgtgaaatt ttttctagta attccttttt taatttttta tcttccaatt
     5281 tctcatcttt tagcatctct aagctaagat caatcacgct taatggattt ttaagctcat
     5341 gagaaatagc agaaatcacg ctagcaagct gagtattttt taaagtgatt ttatcgcttt
     5401 gttttttatt tttttgggta ttctttagaa ttttatcctt agtttttaaa agtttctcat
     5461 ttagtaaatt aaattcttta aacattcctt tttctaatat aacaacttta tgatccccta
     5521 tagaatccaa aaaatccaaa attttattaa aatttttctc tattcttcta cctaacaaca
     5581 acattaaaat aaaaacaaac agcaagcata ctccaaaacc gattgccatt tttgtccaaa
     5641 aaagttctaa atctaaaaaa cgaggataaa caataataat atatttatat cctttgtaaa
     5701 taaagctttt agtgagaatt ttttttgaat tgaaatttaa aatttctcct tctttaagat
     5761 tagaaaaaaa atcaggattt tttacagaac ttattttcat atcattgttt aggataataa
     5821 aatcagccct agtatcttta gcaaaattct tgatattagc atcatttaaa tgctctaaga
     5881 gagaaaattt taaaacatca tcaaggcttt tgattttttg ttcatattgt tttataagca
     5941 agaaattaag ataagaatta gtaaaagtat aaaaaataaa cccaaaaatc aaagccaata
     6001 caacaaaaaa aactataaaa atatttttag tttttagcat aatttatagc caatacccct
     6061 aacacttata atatgatctt ttagttttgg aaatttattt ctaagtcttg ttagagctat
     6121 attgattgtt ttatcacttg tagtatcatc tttccaaaca ctttcgctta aaaattgtct
     6181 agtaagcaag gtatttggat tttcaaaaaa acattttaaa agctcatagt caagatttga
     6241 gatttctaat ttttgatttt tgtaaaagaa ttcataacta accaaatcta aaataaaatc
     6301 accaaaagat agtttttctt cttctttttt atggcgtttt aaaattgctt taatgcgaag
     6361 caaaagctca ttgaaatcaa aaggtttaca aacataatca tcacaaccac tttcaaagcc
     6421 ttcgagtaaa tcttgatgta aagccttggc tgtaagaaaa ataactgctt ctttatatcc
     6481 ttgctctctt aaatcttgaa ttttttctaa agaatctcca ctgggcaaat ttctatcgac
     6541 tattaaaaga tcaatttgct cattatcgag caaatcttca actccaaaaa aatccgctaa
     6601 agatataact tcataaccgc tagattttaa ctttaaaaca agcagttcgt ttaaatctat
     6661 atcatcttct ataattaaaa ttttaaattt caacatattg gacaaataca cacgcctcta
     6721 attgttttag ttcatctaat acttcttttt gaactttttc atcaatcaaa acaacagcca
     6781 aagcataccc aaaaccatct ctaccaagcc taaaatcagc tatattgata tttttagctg
     6841 ccaaaacgga actgatttta gctataactc ctggtatgtc tttgttttta aaaataatca
     6901 tttttccctt tggcttaaaa tcagttttaa agccatttaa tccaactatg cgttgttcat
     6961 tttcattaaa cactgttcct gaaacactga tatttgaatt ttcggtgata attttaacgc
     7021 taagtttatt attataacca ctatttggaa gagtttcgca agataattca actccttttt
     7081 ctttggcaac aaattctgca ttaacataat taattttctc tcctaaaatt ccacccaaag
     7141 caccaacagc tgcaaaagtt agcatagaat ttgcatactc accaataatt ccttcagcct
     7201 ctaatttaat actttttata ggatttttat caatttgaac agctaaaaaa gccattttag
     7261 aaacaagttc tatataagga gctacaaaag gtggtaaatc ttcagtttta attggtaaat
     7321 ttaaggcatt aggataagcc acgcctcgtg ctgcgcttaa tgcttgctca caagcttctc
     7381 ttgcgatatt gtcttgactt tctaaagtat ttgctcctag gtgagaagta actgaaatat
     7441 tttcaaagtc taaaagagga tgattagtcg cgggttcttt atcgaacaca tctataccaa
     7501 gccaagctat tttaccactt tttaaacctt catataaagc ctcttctgtg tataatcctc
     7561 cgcgagcaca atttattaat cttattccat ctttcatttt tgcaatttct tgctttccta
     7621 tcataccatt ggtttctttg gtttttggtg tgtgaatggt aataaaatca cttttttcta
     7681 aaatttcatc caaatttttt gcttgttcca tatctaaatc tgtaatctta gaagcagaaa
     7741 tatacggatc ataggctaaa attttcatac caaatgcttt agcacggata gctactcttg
     7801 aacctatatt tccaaaacct ataaccccta gcgttttatt catcaattca atgccatacc
     7861 atttttctct ttcccatttt ctttcaattt ttaaaaaatt atgagcattg acaaagcttc
     7921 tagctgatgt taaaagatgt gccattgtta gttcaactgc ggcaatagta tttgcagttg
     7981 ggacattcat cacaatcact cctcgtttag aacactctgg aatatcaaca ttatctacgc
     8041 ccaccccagc acgcacaagc gcttttaatt ttttggcatg atttaaaaaa tttacatcta
     8101 catccgtaga acttctagta attgcaactt caatatcgct tagcatttgc ataagttcat
     8161 cttttggaaa ttttgcagct tctataagct caatatcttc agcttttctt agaatatcga
     8221 cacctttatc caaaatagca tcacacacta taatcttttt tttcataacc aaatttcctt
     8281 tacttctgta tttattttat atttttttaa ttctttgata atatcatcta taagtttttc
     8341 attgcctgta tccaaaaaga tttctggact atcgccagat ttaagaagaa aatacttcac
     8401 attaaaagaa tttaaagtct gtcttaagca aaacatagaa taaatatcat attttccaac
     8461 tataagttga taatatttat ttttctcctt aagctcgcta gtatccgcat caaaatataa
     8521 ggtaaatttt tctgctgctg gggtaaaatc tcttgtaggc cattttgcta attcttcttg
     8581 ccatgaaaga tcttgatttt gggtttgaat gcttggctgc gtatttgtat ctttagcaaa
     8641 ttgtggaatg aaatttacat tagctttaaa ttgccaaagc aatgtaaaaa caacagcaag
     8701 caaaatgagt aataaaatac tcaaaatgct cattgtaatg tattttttca ttaagctagc
     8761 tgatctttaa tgatatcacc taaagttact ttatcatcat tattgatttc attaagaact
     8821 tctctttctt ttattctaac aagattttta acacttaggc gaattctatt tttcttttca
     8881 tcaataaaaa ctatagcagc ttcaatatcg tcgccaattt ttaaattttc aagcatagaa
     8941 gtgcttatat cttctttatg aattaaagca tcaacatttt tacttagctc tacaaaaaca
     9001 ccaaaatctt taatatcacg gatagtgcct tttacaatat cgccgacttt atgaattttg
     9061 gcatattctt gcactggaga actgtttaat tcttttgcgc ttaatgatat tttttggttt
     9121 tcttcatcta ttttgataat ttttaccttg attttatccc cttgagagaa tttgtcttta
     9181 catttatcgt ttctatccca agaagcatct tcattatgca atagaccttc aataccgcca
     9241 agtttaacaa acgcaccaaa agaagttacc gaggtgatct ccccttcaac cacatctgca
     9301 attttgtaag atttcataaa ttcatcaaaa ggtctagaaa gtaaatttct taaagaaact
     9361 cttaagcgtc tttcatttgg attgatttca attacttcaa catcaatttc ttgacctttg
     9421 ttgatataat cttttggatt tttaatattt ttatcccaag aaatttcact gatatgtaaa
     9481 aatccttcta tatcatttcc taaatccaca aaagcaccat aaggctctat atttgatact
     9541 attactttaa tggtatcacc tacatcaaga gtatctttta tctcgctcca tggatcgggt
     9601 aaagccgctt ttatagacaa ggataaatgt ttgcgttctt tatcatactt tataacttta
     9661 actggaacct tatcaccctc tttataaagt gttccaggat ttacaggtcc tttgtaagaa
     9721 atttcgctgt aatgaacaag accatcaaca cctcctacat ccacaaacat accataagta
     9781 gtaatttttt tcacaatacc ttcaattaaa tcttcttgtt gtgctacatt attgatcaat
     9841 tctttgcgtt ttcttctctc gtcatctaaa gtttttttac gagaaacaat gatactttgc
     9901 tcatctttgt cgattttaat aattttaact ttaaacgttt tgcctataat attatttgtt
     9961 tctttgaagc catattgaga ttttggtaag aaaaattcaa catcattttc atcaacaact
    10021 atcaatccgc ctttattttt tccaactact tttacggtaa aaatatcatc ttgattttct
    10081 tgatagtttt taataaattc gataactttt tcttttctca aagctttttt atgagaaagt
    10141 aaagatctgc caccacgaga acccataaca gcaactttaa taccatcgcc tacattaaat
    10201 aatagcttag aattgtcatc ttgtatttcg ctaagagcta aaataccttc agatttttta
    10261 cctatatcta cataaacttc atcatttttg atctctacaa tcacaccctc tgttgcagcc
    10321 tcttctcttg atttatcaaa agcttctaaa agctgtccaa aatcttcttc ctcaagataa
    10381 tcatctacgc cgccttgaac ttttttgttc acctcgctca ttatgatcct ttaaaataat
    10441 ttttagaaat tgattgattt taccttattt ttctttaatt agtgttaagt ttttttattt
    10501 ttgttaattt tttttaaatt tttgact
//
LOCUS       DAPIWV010000061        10479 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.062, whole genome shotgun sequence.
ACCESSION   DAPIWV010000061 DAPIWV010000000
VERSION     DAPIWV010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10479
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.062"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(3..386)
                     /gene="queF"
                     /locus_tag="RJ272_001111"
     CDS             complement(3..386)
                     /gene="queF"
                     /locus_tag="RJ272_001111"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDV7382204.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            complement(633..3203)
                     /gene="flgE"
                     /locus_tag="RJ272_001112"
     CDS             complement(633..3203)
                     /gene="flgE"
                     /locus_tag="RJ272_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7382205.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDDGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTAKTPIYGLDSVHGYNKKDGTAKNENDTGITQ
                     FYTTSKNSIEVTEKGVDAGSLFNANGTGLNLRDGQGIWVSYADSKFSTAGAGAQANQG
                     NNGVFDPNQKVQQDRVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAP
                     TDTRDGTGVKAVKKADGSGIDFINDNADGTTDNMKNIDLQVNPQNSAGELVRVRVTNT
                     NPPDFDWQNTQLRPAGNPMVNGAGSAWIAGNAAQNQNRIQIVTAHKYVYSSTPVQLDP
                     MYNPDGGPAFNANNAAQPGTAENNYMNAINGSLLNTTVRSFRTTEDLRELLQRDARYG
                     VDYDGSGVFEIDGRDVNEGVKVTVGATGEFIISNPNEIPARPGVTPPGGADNRKPHDI
                     SFNVTAYTDTQGKISKNDAFTTIFKGFDGVLTVGNSNRQSEQLFLSAFSAGLEIYDSL
                     GSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDGSL
                     SNYTPKTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLK
                     PDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVG
                     EAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ
                     "
     gene            complement(3396..3878)
                     /gene="ruvC"
                     /locus_tag="RJ272_001113"
     CDS             complement(3396..3878)
                     /gene="ruvC"
                     /locus_tag="RJ272_001113"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDV7382206.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            3974..5296
                     /gene="dnaA"
                     /locus_tag="RJ272_001114"
     CDS             3974..5296
                     /gene="dnaA"
                     /locus_tag="RJ272_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDV7382207.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARTLTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDTSLKAKIEELKNKILVKSQS"
     gene            5456..6523
                     /locus_tag="RJ272_001115"
     CDS             5456..6523
                     /locus_tag="RJ272_001115"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDV7382208.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            6552..8861
                     /gene="gyrB"
                     /locus_tag="RJ272_001116"
     CDS             6552..8861
                     /gene="gyrB"
                     /locus_tag="RJ272_001116"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDV7382209.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDSRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(8887..9228)
                     /locus_tag="RJ272_001117"
     CDS             complement(8887..9228)
                     /locus_tag="RJ272_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HDV7382210.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(9231..10469)
                     /locus_tag="RJ272_001118"
     CDS             complement(9231..10469)
                     /locus_tag="RJ272_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HDV7382211.1"
                     /translation="MKQNNQKEDRRDFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         3636 a         1733 c         1650 g         3460 t
ORIGIN      
        1 tattattttg gcactaccat atcgctacga cattctatca ccgtatgcac atttccacgc
       61 gggttaaaat cccccacaac tttaatccat tttggtttta atttatcttt taaagtatta
      121 taaatttcat tgatacttgc ttcatgtgaa acatttctat acataaaagt attgatataa
      181 agttttatcg ccttaagctc aaccacaaat ttatcaggca tatactcaag ataaatcgtc
      241 gcaaagtcag gataacccga acgcggacaa caacacataa attcaggtaa agtgatttta
      301 atgatatagt catttttagc atcatttggc caaatttcca tattttctac atcaaattct
      361 ttgatttcct tttcaccata acgcataaat ttccttaaaa tttaaattcg agcaaaaatt
      421 ataacaaaat aagtttttaa aacgattatg atacagataa gaaaatgcaa ttttattgca
      481 actcaccccc tagcaagagt gagttagcaa taaattgaag gcagttcaag cctaagccta
      541 gtattacaag actaccaaga taggcttgta aagcaaggct tgctcccttt aagggagcaa
      601 aaaacaatat tttatagaat actaagctta aattattgtt taagctggat tagagtttgg
      661 agcatttgat cactcgttga aatggtttta gagtttgctt gataacctct ttgaatgatg
      721 ataagctctg ttaaagaacg acttaaatcc acatttgaca tttcaagagc tgaggttttc
      781 atctcaccac gacctcctgt tcctgcttca cctactacta tagccccact atttgcagtg
      841 actttaaaaa gatttccgcc gatttcttca agacctgagt tatttgccac tgaagccatt
      901 gctatttttg ctacagcaaa ggttttgcca ttagtaaatt cacctaagat attacctttg
      961 tcatccacac ggatagcatc aggttttaag ttacctgaag tataaccatc agttgcttgt
     1021 cctgttagag ttgaagcaga atttgagctt acaaggccgt cattgcttcc acttgttcca
     1081 aaggaaagtt tgatttgttg atttggtgcg gcaccattgt ttggtgagaa atttatcgtt
     1141 tttggtgtat agtttgataa agaaccatca ttattaaatc ttgctgttcc tacgatgata
     1201 ttgtttggtc cttcgcctgt agtgttaatc tctgcaggtt ctggtacacg gatgatcatt
     1261 tgccattcat tacccccatc ttgagtggta ctttgcttaa caaactgcac ttctaaagta
     1321 tgttttgaac ctaaggaatc ataaatttca agtccagctg aaaaagcgct taagaagagt
     1381 tgttcgcttt ggcgattaga atttcccacg gttaaaactc catcaaaacc tttaaaaata
     1441 gttgtaaaag catcattttt actaatttta ccttgagtat cagtataagc tgtaacatta
     1501 aagcttatat catgaggttt tctattgtct gcaccacctg gaggtgttac accaggtcta
     1561 gctggaattt catttggatt tgatattata aattcacctg ttgcaccgac tgttactttt
     1621 acaccttcat taacatctct accatcaatt tcaaacacac cacttccatc ataatcaaca
     1681 ccatatctag catctctttg taaaagttct cttaaatctt cagtggttct aaagcttctt
     1741 actgttgtat ttaataaaga accattgatg gcattcatat aattattttc agctgttcca
     1801 ggttgagcgg cattatttgc attaaaagca ggaccaccat ctggattata cataggatct
     1861 agttgaacag gagttgagct atatacatat ttatgtgctg ttactatttg tattctattt
     1921 tgattttgag cagcatttcc tgctatccaa gcactaccag caccgtttac cataggatta
     1981 cctgcaggtc taagttgagt attttgccaa tcaaaatcag gaggattggt gttagtaact
     2041 cttactctta ctaattctcc agctgaattt tgaggattta cttgtaaatc tatatttttc
     2101 atgttatctg tagtgccatc agcattatca ttgataaaat caatcccact accatctgct
     2161 ttttttaccg cttttactcc tgttccatcc cttgtatccg ttggtgcagt aaaggtattg
     2221 atataagcta tagcttcatc taaacttttt atagaagtat tctgtatatg aactccattt
     2281 aaagtaatat ccaaagttgt aggtttttgt tcatgtcccc aaaatataac cctatcttgt
     2341 tgaacttttt gatttggatc aaaaacacca ttattacctt gatttgcttg agctccagct
     2401 ccagctgtgc taaatttaga atctgcataa cttacccata taccttgtcc atctcttaga
     2461 tttaatcctg tgccattagc attaaaaagt gatcctgcat ccacaccctt ttccgtcact
     2521 tctatagaat ttttggaagt cgtgtaaaac tgagtgattc ctgtatcatt ttcatttttt
     2581 gctgttccat cttttttgtt atatccatga acagaatcaa gtccatatat aggagtttta
     2641 gctgttccta tatttaaacc gctatttaaa ttcgctttga tagctacttc tgtcgatttt
     2701 gctgcaggga tatgcatacc gggatcgata aaaatatttt gcggagttct tgagctatct
     2761 atactttgag tatcccagtt gatattccac ccttggacaa caaaacctgc attattaaca
     2821 aaatttccat aagcatcgag tttaaaatcc ccgctccttg taagatagtt tgtaagacca
     2881 tcatcatcac tcaccataaa aaaaccatca ccatttatag caacatcagt gtttttatct
     2941 gtggtttgaa ctgaaccttg agaatgaatt ctagttgtag aacttactga aacaccaaga
     3001 ccgatttgaa gtggattaga tccgcctctt ccatcagttg gagctgtagc gattttcaca
     3061 gtttggctaa acatggttcc aaaatctgca cgagagtatt taaaaccagt ggtattaaca
     3121 tttgaaatgt tattaccttc aacatccatc gcaacttgat gtgcttgtag tccgcttacg
     3181 ccagaccaaa gtgatctcat catcttaaat cctttataaa atattgcttt aaaaaattta
     3241 acgctttggc tttaaaaaac ttttgcgttt atgtgaagtt tacaagcaaa ttctgttcca
     3301 acttttgaaa ttttttaaaa atttatagaa aaaatttaaa ggtattttag gagtttatga
     3361 agctttgggc ttttgtgtaa taaaaattac taaaatcaca ccctaactct taaatttgct
     3421 gcatgggtta aagctactgc aatagcatct gtgatatcca aaggcttgat atctttacta
     3481 agtcctaaaa gcctttttac cataaaagca acttgttctt tagttgcttt ggcttttcct
     3541 gtaacggctt tttttacttg taagggagtg tattctgcaa agtctccatg aatttgaaga
     3601 atttttaaag atagggctcc gcgaaattgt gcgagtttta aaacggtttt tggattgtaa
     3661 gcaaaaaaga tatcttctat agccacctca tcaaaagaat gatttttaaa aatcaagtcc
     3721 aaaccctcac aaagctctgt gatttgatac tgtaaggtgc ttggctttat ctttataagt
     3781 cctgcttcta tgagaatgtt ttttcctttg ttggcttcta tgatagcata accacaattt
     3841 ctcgaacctg gatctatacc taaaattttc aaattcatac cttttgaaaa ataaaatacg
     3901 aaagcggatt ttaacctttt tttataaaat ttaagataaa atttatacat tatgcaaaat
     3961 ttaaagagag attatgaatc caagccaaat acttgaaaat ttaaaaaaag aattaaacga
     4021 aaacgaatac gaaaactatt tatcaaattt aaaattcaac gaaaaacaaa gcaaagcaga
     4081 tcttttagtt tttaacgctc caaatgaact catggctaaa ttcatacaaa caaaatacgg
     4141 taaaaaaatc gcacattttt atgaagtgca aagtggaaat aaagccatca taaatataca
     4201 agcacaaagt gctaaacaaa gtaacaaaag cacaaaaatc gacatagctc atataaaagc
     4261 acaaagcaca attttaaatc cttcttttac ttttgacagt tttgttgtgg gggattctaa
     4321 caaatacgct tatggagcat gtaaagctat aacacataaa gacaagcttg gaaaacttta
     4381 taatcctatc tttgtttatg ggcctacagg acttggaaaa acacatttac ttcaagcggt
     4441 tggaaatgca agcttagaaa tgggaaaaaa agtaatttat gctacgagtg aaaattttat
     4501 caacgatttt acttcaaatt taaaaaatgg ctctttagat aaatttcatg aaaagtatag
     4561 aaactgcgat gttttgctta tagatgatgt gcagttttta ggaaaaaccg ataaaattca
     4621 agaagaattt ttctttatat ttaatgaaat caaaaataac gatggacaaa tcatcatgac
     4681 ttcagacaat ccacccaaca tgctaaaagg tataaccgaa cgcttaaaaa gtcgttttgc
     4741 acatgggatc atagctgata taactccacc tcaactagat acaaaaatag ccatcataag
     4801 aaaaaaatgt gaatttaacg atatcaatct ttctaatgat atcataaact atatcgccac
     4861 ttctttaggg gataatataa gagaaatcga aggtatcatc ataagtttaa atgcttatgc
     4921 aaccatacta ggacaagaaa tcacactcga acttgccaaa agtgtgatga aagatcatat
     4981 caaagaaaag aaagaaaata tcactataga tgatatttta tctttagtgt gtaaagaatt
     5041 taacatcaaa ccaagcgatg tgaaatccaa taaaaaaact caaaatatag tcacagcaag
     5101 acgcattgtg atttacctag ctaggacact cacggctttg actatgccac aacttgcgaa
     5161 ttattttgaa atgaaagatc atacagctat ttcacataat gttaaaaaaa tcacagaaat
     5221 gatagaaaat gatacttctt taaaagcaaa aatcgaagaa cttaaaaaca aaattcttgt
     5281 taaaagtcaa agttaagtga aaggatgtga aaaataaatt ctagagtgtg aaaaaaagaa
     5341 attaagcaaa gtatgataaa atacaaattt gattattttg ctttgaagaa tttcacaatt
     5401 tcaacaagct tattattaca acgaatttaa aattaaaata aaccaaggag aaaaaatgaa
     5461 gttaagtatc aataaaaata ctttagaatc tgcagtgatt ttatgtaatg cttatgtaga
     5521 aaaaaaagac tcaagcacta ttacttctca tctttttttt catgctgatg aagataaact
     5581 tcttattaga gctagtgatt atgaaatagg tatcaactat aagataaaaa aaatccgcgt
     5641 agaatcaagt ggttttgcta ctgcaaatgc aaaaagtatt gcagatgtta ttaaaagctt
     5701 aaacaatgaa gaagttgttt tagaaaccat tgataatttc ttatttataa gacaaaagag
     5761 tacaaaatac aaacttccta tgtttaatca tgaagatttt ccaaattttc caaatacaga
     5821 aggaaaaaac caatttgaca ttgattcaag tgacttaagt cgttctctta aaaagatatt
     5881 accaagtatt gatacaaaca acccaaaata ctccttaaat ggtgcatttt tagatataaa
     5941 aacagataaa attaacttcg taggaactga tacaaaacgc cttgcaatct atactttaga
     6001 aaaagcaaat aatcaagaat ttagttttag tatccctaaa aaagctatta tggaaatgca
     6061 aaaacttttc tatgaaaaaa tagaaatttt ttatgatcaa aatatgctta tcgctaaaaa
     6121 tgaaaatttt gaattcttta caaaacttat caatgataaa tttccagatt atgaaaaagt
     6181 tataccaaaa actttcaaac aagaactcag tttttcaact gaagatttta tagatagtct
     6241 taaaaaaatc agcgttgtaa ctgaaaaaat gaaacttcat tttaacaaag ataaaatcat
     6301 ctttgaaggt ataagtttag acaatatgga agcaaaaaca gagcttgaaa ttcaaacagg
     6361 agtaagtgaa gaatttaatc ttactataaa aatcaaatat ttacttgatt tcttaacttc
     6421 tatagaagaa gaaaaattca ctttaagtgt aaatgaacct aattcagcat ttatagtcaa
     6481 atcccaagga ctatcaatga ttatcatgcc tatgattttg taataaaaca agtaaaagat
     6541 aaaggaaaaa tatgcaagaa aattacggtg cgagtaatat taaagtccta aaaggcttag
     6601 aagctgttag aaaacgccca ggtatgtata taggagatac aaacataggc ggacttcatc
     6661 atatgattta tgaagttgtg gataattcta tcgatgaagc tatggcagga cattgtgata
     6721 ctatagatgt agaaatcact actgaaggaa gctgtatagt tagtgataat ggtcgtggta
     6781 ttcctgttga tatgcaccca actgaaaata tgccaacttt aactgttgtt ttaactgtcc
     6841 ttcatgcagg gggaaaattc gataaagata cttataaagt ttcaggcggt ttgcacggtg
     6901 ttggggtttc ggttgtaaat gcactctcta aaaaacttgt agctacagtt gaaagaaatg
     6961 gagaaattta tcgtcaagaa ttttcagaag gtaaagttat cagtgaattt ggtgtgatag
     7021 gaaaaagtaa aaaaacagga acaactatag aattttggcc tgatgatcaa atttttgaag
     7081 tgactgaatt tgattatgaa attttggcta aaagatttcg tgaacttgca tacttaaatc
     7141 caaaaatcac tataaatttt aaagatagcc gcgtaggcaa acatgaaagt tttcactttg
     7201 aaggtggaat ttctcagttt gttacagact taaataaaaa agaagcttta actaaagcaa
     7261 ttttctttag cgtagatgaa gaagatgtga atgttgaagt agctttgctt tacaatgata
     7321 cttatagtga aaatttactc tcttttgtaa ataatatcaa aaccccagat ggtggaacac
     7381 acgaagctgg ttttagaatg ggcttaactc gtgtgataag taactatata gaagcaaatg
     7441 caagtgctag agaaaaggat aataaaatca caggtgaaga tgtgcgtgaa ggtttaatcg
     7501 ctgttgtgag tgtaaaggtg cctgaaccac aatttgaagg acaaaccaaa ggaaaacttg
     7561 gttcaactta tgtgcgtcct atagtttcaa aagcaagttt tgagtatttg actaaatatt
     7621 ttgaagaaaa tcctatcgaa gctaaagcta taatgaacaa agccttaatg gcagcacgcg
     7681 gaagagaagc agcgaaaaaa gctagagaat taacgcgtaa aaaagaaagt ttaagcgtag
     7741 gaactttacc agggaaattg gctgattgtc aaagtaaaga tccaagtgaa agtgaaattt
     7801 atcttgtgga aggggattct gcaggaggtt ctgcaaaaca aggtagagaa agatctttcc
     7861 aagctatact gcctttgcgt ggtaaaattt taaatgttga aaaagcaaga ctggataaaa
     7921 ttttaaaatc tgagcaaatt caaaatatga ttaccgcttt tggctgtggt ataggtgaag
     7981 attttgatct ttcaaaactt agatatcata aaatcatcat catgacagat gcggatgttg
     8041 atggatcaca tatacaaacc ttgcttttaa ctttcttctt ccgttttatg aatgaacttg
     8101 tggcaaatgg acatatttat ttagcacaac cacctttata tctttataaa aaagctaaaa
     8161 agcaaattta tttaaaagat gaaaaagctt tgagcgaata cctgatagaa acgggaatag
     8221 aaggtttaaa ctatgaaggt ataggaatga atgatttaaa agattattta aaaatcgttg
     8281 cagcttatcg tgcgatttta aaagatcttg aaaagcgttt taatgtgatt tctgtgatac
     8341 gctatatgat agaaaattca aatttagtta aaggaaataa tgaagaatta tttagtgtaa
     8401 tcaaacaatt tttagaaaca caaggacaca atatcttaaa tcattatatc aatgaaaatg
     8461 aaattcgagc tttcgttcaa actcaaaatg gcttagaaga acttgtgatc aatgaagaac
     8521 ttttcactca tccactatat gaagaagcaa gttatatttt tgataagatt aaagatagag
     8581 gcttggaatt tgataaagat attttagaag ttcttgaaga tgttgaaacc aatgctaaaa
     8641 aaggtgctac tatacaacgc tataaaggtt taggggaaat gaatcctgag caactttggg
     8701 aaactacaat ggatccaagc gtaagaagac ttttaaaaat cactattgaa gatgcacaaa
     8761 gtgcaaatga tacctttaat ctctttatgg gtgatgaggt tgaaccaaga cgcgattata
     8821 tccaagcaca cgctaaagat gtaaagcatt tagatgtgta aatttatcat tgaagaaatg
     8881 atttcttcaa tgagttttgt tttgtaagag tatagctaga ggaattcttc ttcttgtatc
     8941 gtatttttct ccataatatt tttcaagata atttaaaatt ttttcttcat cttcaggttc
     9001 tatttcccaa agtccttcac tatcttgcat ccatcttata gctgctaacc aagcttttct
     9061 acttgcatgc atattggtaa tgagattgga tccatgacaa gctaaacaat ttgcttccac
     9121 taacggtgaa tcaggatcga taatcaatcc tgtatcaggg ttaatttcaa gattttgagc
     9181 ccaacttgca ctcaaaaaca atgctaagat caatataatt tttttcatac ttaaactcca
     9241 taaacattaa ctctatggca tgcattattg atatatcctc ctggattcca ctgtgctaaa
     9301 accataggtt gactgttacc ttgactatcg atagctcttg cccaaatttc ataatatcct
     9361 tttgttggta ttgatatttg agcactccat ttttgccatg ctaatctatt taatggtttt
     9421 tctacctttg ctttagtcca tgttacgcca taatcattgc ttacataaac ttcactaact
     9481 tcaagttctc cagcccaagc tttacctcta acttcaaatt ttttatttgc ttttatttca
     9541 gaaccatttt tgatattagt aattacagat cttataggca ttgattctat gattttcatc
     9601 tcgcctttat agttaaaatc tcctggtttt accggattta caggaacttt ataagaacct
     9661 tccatttttt caccatcgtg aattttattt cttactgaaa ttttataaag ccatttaccg
     9721 cttgtacttg cagggtaacc accacaaaca agtctaagtg gatagccatt gactaaagga
     9781 atatctttgc cttcataagc ccaagctatt agagtttcat cttgtaaagc tttagaaata
     9841 ggaactcctc tactaatagg tgaagtttct tcaccattta attttgtatc tatgccataa
     9901 tatccgatat aaaccgcatc atttttgatg ccacaatctt ttaaaatatc ttttaaacgc
     9961 actcctgtcc atctaccgca agctactgca ccataacccc attgagttcc ttttgtgcta
    10021 ggtataactt cggatctacc atttccaccg cattcaactg ttaaggcata agtataggtt
    10081 ttaaatttct tttttaaatc ttctatggtg taagattttt tattgataat gctttctcca
    10141 tcgatttcta aagtccaacc tttatgaagt ctttctttta tcgtttctag gcttggtggt
    10201 aagccattat ttctaacaaa gaaattttca ggtttagtaa aatcagaatc aagagcataa
    10261 atttcagttt ctgctgttaa tggtttttcg ccatgataga taagatcttt tttaccttct
    10321 attttaaaat caggcaattc ttttgccaaa gccttacttc ctaaaaaatt ctcaaaagaa
    10381 aaatttgaca atacgctgat accaagcaaa ccaaatccta tattttttaa gaaatctctg
    10441 cgatcttctt tttgattgtt ttgtttcatt gaaatatcc
//
LOCUS       DAPIWV010000062        10470 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.063, whole genome shotgun sequence.
ACCESSION   DAPIWV010000062 DAPIWV010000000
VERSION     DAPIWV010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.063"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(140..640)
                     /locus_tag="RJ272_001119"
     CDS             complement(140..640)
                     /locus_tag="RJ272_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382212.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATAITMGETIDNTGIYNSTMD
                     FKNLFK"
     gene            complement(696..1295)
                     /locus_tag="RJ272_001120"
     CDS             complement(696..1295)
                     /locus_tag="RJ272_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HDV7382213.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIHSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            complement(1295..2185)
                     /locus_tag="RJ272_001121"
     CDS             complement(1295..2185)
                     /locus_tag="RJ272_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDV7382214.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            complement(2188..2910)
                     /locus_tag="RJ272_001122"
     CDS             complement(2188..2910)
                     /locus_tag="RJ272_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7382215.1"
                     /translation="MVVKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNISEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            complement(2911..4020)
                     /locus_tag="RJ272_001123"
     CDS             complement(2911..4020)
                     /locus_tag="RJ272_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7382216.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMIAKLNLDISFVEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            complement(4022..5920)
                     /gene="tkt"
                     /locus_tag="RJ272_001124"
     CDS             complement(4022..5920)
                     /gene="tkt"
                     /locus_tag="RJ272_001124"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDV7382217.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNDISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLRALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESTNELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            complement(5930..6775)
                     /locus_tag="RJ272_001125"
     CDS             complement(5930..6775)
                     /locus_tag="RJ272_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDV7382218.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPKLLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            complement(6772..7866)
                     /locus_tag="RJ272_001126"
     CDS             complement(6772..7866)
                     /locus_tag="RJ272_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HDV7382219.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVIRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            complement(7863..8174)
                     /locus_tag="RJ272_001127"
     CDS             complement(7863..8174)
                     /locus_tag="RJ272_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDV7382220.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            complement(8178..9461)
                     /locus_tag="RJ272_001128"
     CDS             complement(8178..9461)
                     /locus_tag="RJ272_001128"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDV7382221.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            complement(9445..9996)
                     /locus_tag="RJ272_001129"
     CDS             complement(9445..9996)
                     /locus_tag="RJ272_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7382222.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            complement(9983..10255)
                     /locus_tag="RJ272_001130"
     CDS             complement(9983..10255)
                     /locus_tag="RJ272_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HDV7382223.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
BASE COUNT         3328 a         1773 c         1493 g         3876 t
ORIGIN      
        1 atcttttaag atctcttttg ggttaggcta tttccctccc ctttttattc gtagcctaac
       61 tctcttttaa gagtttggaa aatctcttta agctaaaata tattatattt tcttaaagag
      121 aacaaacgat tactatttct tatttaaata aatttttaaa atccattgta gagttataaa
      181 ttccagtatt atctatagtt tcgcccatgg tgattgcggt tgctaactct gatagaatga
      241 tttttatttc atctctttta tcttgtatat aggccaatac accttcgtaa ttacttgttt
      301 gaagaattaa aagtggatta gcaatttcaa attcaaaaag ttttttacca acataaacat
      361 tgaaaatatt tccaaaaaga gctgttccca tgaaagagca gttttgtata agttgtgatg
      421 ctgtggcatc aagagttctt ttttgcatat catctgaatt ttcatctatt ctttctagaa
      481 tacttttttc tatttttttt aaagacatat caagcacttg aagtgctcct ataaaatcat
      541 ttgcatcatt gatttgagag caaatttgat ttgctttaaa ttcattcacg ccttgaattt
      601 cacctaagtg ttttttaaat atatctaaat cacttttcat tgtttacctt tcaaaaatat
      661 tgctcaatat ttaaaaagca aaaagtgttc ctaaattagg ataagttaga atttacccaa
      721 aaaacaatct cattgccaat tttattcaag gctttttgaa aagcattata agtagagtgg
      781 atgtcttttt tttctatttt ttctttagta ttgaaaattt tatgagctat tatttgattg
      841 ttttcaagat ttatgaaatt tacgcttata gaaatttgag cgtagttttc attgttatta
      901 agaatttgct caaaagagtt aatcctgctt tcaagagcat aatccgcact taaagagctt
      961 gttgaagaaa gtagggttgt aaaaatattg ctttgttcaa attttgacaa aattaaaaaa
     1021 gaataaagat tgcttggtaa atctccccag aaataatgtg cgtatttgtt gctaaaacca
     1081 ttatctatat aaacaatagc tcgcgagttt aaatacaaag gtgcatttgc attgcgaatt
     1141 ttaagaattt taccggtttt tttaaaaaaa atatttgaat ctattccttc atcttttaat
     1201 atgatatttt catttttgtt gatggtttcg tgtcttaaag agcatccgca taacataaaa
     1261 ataaaagtca aaatacagaa taattgcttt agcattattt ttctcctggt cctagtttag
     1321 gtttggtttc tttaaaaatc aaatcagcag ggctgttttg taaattttct attagaatat
     1381 tgctttcaat taaaactcgt ttaaaaagct ctaaattttg catcaaagat gctttaatat
     1441 catcataagt gtttaatttt tcatcagctt tttttatgaa attttttaaa atcatcgtac
     1501 tttcttttat gtctttaaga ctggagttga aattttgcgc actaaggctt atattatcag
     1561 ccatttttcc tatttttaaa cttgcgtttg aaagattaag gcttaaattt ttagaattag
     1621 cgtttaaatt tgcacttaat tctgctagat tttgcaaaag gatttctaga tttttaagat
     1681 ttttttcgct taaaagttct tttgatttat catcggccgt tttaactaaa gaaaaaatat
     1741 gttcactttg tctatctata gttgctaaaa aactttcttt aaaaggaatg actggaagtt
     1801 ttccctgtat agatactaaa tctttgctat ttttacttcc gccttgaagt tggacaaatt
     1861 taagtcctgt gataccttga agttgcaaag tagcaaaagt atcttctttt ataggggtgt
     1921 tatttttgac cttgatgcgt atgttaacgc cgagttcatc ttgattgtaa atgctgattt
     1981 cttctacgct acctacttcc acgcccaaaa gccttacggg tgcttttatg ccaagtcctg
     2041 caacggattc ttgtgtgtga atttcataat acttaaaact ttcttcttta gagtatccac
     2101 caagccaaag tatgaaacca aggcttgcaa aaaatactcc aaaaacaaaa agtcctacaa
     2161 aaaaataatt tgctctattt tccactttta ctccataaat cttttaaaaa gtcgttcatt
     2221 ttgcaggcgt aattcttcat aagtaccgca aaatccaact tttttatttt ctaaaatgat
     2281 aaaacgatcg agtaaatttt tcatactttc tttatcatgt gtaaccaaaa tgatatttaa
     2341 atcaaaactt ttttttaact ctaaaaccaa atcgtcaaat tcacgactac tatgagggtc
     2401 aagtcctgaa gtaggttcat ctaaaaaaag caatttacta tcaagtgcta aagctctagc
     2461 aattgccact cttttttgca taccgccact aagttcactt ggaaattgtt ttaaaacact
     2521 ttcgtttaag cctaccattt ttagcttcat taaaaccagt tcttgtatgc tattttcatc
     2581 taaatgagtg tattctttta aaggaatggc gatattttca taaacattaa aaaagctaaa
     2641 aagtgcagca aactgaaaaa ccacacccca ttttttacgc aaagcaagtg catcttcttc
     2701 gctgatattt ttaagtttat agcctaaaat ttcatattct ccaccatcaa aatgttcaag
     2761 cataagcatt tgttttaaaa ggacggattt tccacttcca ctacctccta aaataccaaa
     2821 aatttcattt tttttgattt caaaacttac gccatcatgg acaatttttt ctccaaattt
     2881 tgtaatgata ttttgcgctt taacaaccat ttaaattcct gcagaagtta aaacaacaga
     2941 gaataaagca tcaaaagcta tcacccaaaa aatagcattt acaacgcttt ttgttgtata
     3001 aattcctatg ctttgtgtag tgttttttac ctcaaaacca cgaaaacaag caataagtcc
     3061 tattaaaaat ccaaaaatag gtgcttttgc aagtcctata aagatatgtt ttatatcgac
     3121 agcttctcta aagcgtctta aaaattcgac aaaagaaata tcaagattta attttgcaat
     3181 catcattccg cctataatac tgattgcatc gctaatggca acgattaaag gcatggccac
     3241 taccaaagcc atgacacgtg gaataataat aaattcaaaa gaacgaaaac ccatagtatt
     3301 catagctgca atttcatcag taattttcat cactccaatt tgtgcggtat aagaacttgc
     3361 acttcttccc gcgattacta tggcagcgat taaaggtgca agttctctag tggctgaaat
     3421 tcccatcaaa tccactatga aaatattggc tccaaattgt gcgagttgat aagcagcctg
     3481 ataggctaaa accactccta ctaaaagagc ggttaaaata actataggta aggctttaaa
     3541 agcagaattt tctatatgat ataaaaaagc aataaagcga aaatttttag gatttttaag
     3601 gcataaaaaa agacttgtga aaaaagctcc tgtgaaattg atgaattttc ttaaaatttt
     3661 taaaagttct aaacttaatt ttccaagatc gataaagtat tcactgaaat ttttatgtga
     3721 tttttttgtt ttgcttagtc tttggtagtt tttttcacaa agttcaaaaa gggtttgaaa
     3781 gcgtgaattt aagccttctt tggtgatttt aatattttta tctttaagat cattttccaa
     3841 agcaaggaaa aatctcactc cagcggtatc gattgctttt agatctttaa aatcaaaaat
     3901 cacttccttg ctttggatca aagctaaaaa atcttttatt tttaacttat aaatgcttgt
     3961 tttatcccaa attccaaaga taaaaagagt gttattttga aatttgaaat ttgtattcat
     4021 tttatttgct aaggataaaa tttacaagct ttgaaacgct aaatccaaag tgttcaaaca
     4081 catctttgtc tttgccgctt tctccaaaac tttctatgcc atacacttta tggcaaaatt
     4141 tataaagttc attagaatgt gctgcttcaa cacctataac ttcacctttt aacaatcttt
     4201 cttgataagc tttatcttgt ttttcaaaaa gttcaaaaca aggcatggaa acaacattac
     4261 aagcaaaacc ttgtttttca agttcgtttg tactttctaa acaaagccaa acttcacttc
     4321 cacttgctaa aagtgtaaat ttagcctctt tgctttcttt gagtaaatac gctccatttt
     4381 ttacatctcc aaaaacaggt tcatttagag ctctgagttt ttggcgtgaa agcagaaaag
     4441 cactcggaat atcagcattt agggctattt gccaagcttt gacattttcc accccatcag
     4501 caggtctaaa ggttaaaaaa tttggcatag ctctaaaagt gctaagttgt tctataggtt
     4561 ggtgtgttgg tccatcttcg cccacgccta tgctatcgtg tgtgaaaatg aaaaaatgtt
     4621 tgattttcat tagagctgct attcttgcgg caggttttaa gtactcgcta aagatgaaaa
     4681 aagttgccga aaatggtaag aaaattccat atcttgcaaa agcattgtta atcgctgcca
     4741 tagcgtgttc tctgatacca aaatggatat ttttaccttc tacaaagtct cccatactgt
     4801 gaagttctgt tttattcgaa gggcctaagt ctgcacttcc acctaaaaat ccttctaaat
     4861 ttttagctaa aacatttaaa atttcaccat tactatctct tgtagcaaga tcttttcctt
     4921 taaaatcagg ataagctatc ttgttaaaat caggatttaa tagcctttct aaaagttctt
     4981 ttttagcact tttttcaagc ttatctttcc attttgcttc ttctaaatcc ccaagttcta
     5041 cagcactttc aaagcggatt ttgcttgctt gtgggatatg aaaactgata tttggatcaa
     5101 aacctgcttg ttctttggct tttttaatca cttcttcacc caaaggtgcg ccatggcttt
     5161 tatgactgcc ttcaagctct cctgcaccct ttgctatagt tgtttttgcg atgataagac
     5221 aaggttttgt ggatttttta gcttgttcta aggctttatt aatttcttca taatcgtgtc
     5281 catttatact taaaacttca aatccttgtg cttcaaaacg catttttaca ttttcgttaa
     5341 aggctaaacc tacatcgcct tctatggaga tatcgttgct atcataaata agtatgaaat
     5401 tatcaagttt gtgaagtcct gctaaagaac aagcttcata agaaatgcct tcttgcaaat
     5461 ctccatctcc gcaaagacaa taaattttat gatcgattaa atcactacct agtaaatttt
     5521 gtgctttttt tgccgccata gcaaagccta cagcattggc aacgccttgt cctaaagggc
     5581 ctgtagcaat ctctactcca agagttgaaa tttcagggtg tcctggggtt ttagaatgaa
     5641 gttggcggaa atttttaaga tcttctaggc ttaaatcata gccacttaaa tgtaaaaaac
     5701 tataaagtaa agcacttgca tgtccacctg aaaatacaag tctatcacgg tttagccaag
     5761 ttggattttt gggattgtgt tttaaatgat aacttaaaac acttaaaata tctgctaagc
     5821 ccaaaggtgc acctgggtgt cctgagtttg ctttttgcac catatcggca cttaaaaatc
     5881 ttagagtatt tgcctgttct tgtaaaattt gaatgtccat tttttgcctt tataagtatt
     5941 gaattattaa attttgtatc atttgtgcga gtttttcatt aagtttttct aaatcttgtt
     6001 cgcattcact aagaagattt tcttttgttt ttatggcttg ttcaagtcca agcaaattga
     6061 caaaagaatt tttatgaata tcgttattag taggctttcc gctttgttct tgacttgtgg
     6121 ttacatcgat aatatcatca ttgatttgaa aaatcagtcc tagttttaaa ccaagtttgt
     6181 aaatttgatt gctttcttcg ttgttaagtt cgcaaatttc acaacccatt tttaaagctg
     6241 cagcgattaa tcttgcggtt ttatgtgtgt gtaaaaactc aagttcattt aaactcagtc
     6301 ttttgtcttc aaaaaaacaa tcaatagctt gtcctatgac cattccatta agtcctgcat
     6361 taaaggcaag ggttttgatg agtttgattt tgatttcatc ttttaaatga gcatgactta
     6421 gaactaaaaa agcttcagta tttaaagcat cacccactaa gatggctgta gtttcatcgt
     6481 agcttttgtg taaggttgga attcctcgtc taaaatccgc attatccata gcgggtaaat
     6541 catcgtgtat gagtgaataa gtatggataa attccaaagc taaagccaca tctaaagctt
     6601 gatttaaaag tttaggttta ttgctttgta ctacgcttaa aagcaattgt gcacgaaaat
     6661 gcttccctcc tgcttttagc ataagagcta aagcttcatt aaaaaaagga tgaaagcttt
     6721 cgactttagg tagatttttt tctaagtgat ggataaaaag ttcttttaaa ttcacttagt
     6781 aagccttatg aaaaattgaa atttaccatc gccacctgag ttggcatttc cgcctagttc
     6841 attgttgaaa tttgataaag gtaatttagt acttttgcgt tcaattaaga tgctaaagtc
     6901 attaccagcg cttaaaatat tttgtaattc tttaaaatta tttaaaataa tattattaac
     6961 gcgtaaaatt ttatctccta ccataaatcc tgcatttgat gcttttgatt ttggatctat
     7021 tttggttaca acaagactag tattaaccgt taaaccaaga ttgcttgtga aatttgtaat
     7081 ttttggtttt ggtttagaat caggaaggtt aaatttgctc aaatcttttg caaaaacttc
     7141 agtagaaata tttaaatcca tattatcacg taacacttga aaataaagag tgcttccgcg
     7201 atctgcaaaa agaatttttt cattgagttt tcttaaatca ttggcgggta aaccatcaac
     7261 acttataact tgatcgttga ttaaaaattg tggatttttt cttacattgt taacataaat
     7321 tttattttct cgaataacaa aatcaacgcc aatatccccc caataaacat cgttatattt
     7381 cataaaatgt tttaaatagc gattgcctat aaaagagcta ttatttaaag caatccccat
     7441 catttcacag cacggagtcc ctaaaagtcc tattttagaa ttaaaatcaa gttgatcttt
     7501 ttcatcaata ttttgagcta aatacttaat atgtcctata tagggtttat taggatccca
     7561 aattccaacc caatcattac gagtaagttt ttcttcatca cccataggag tagggattag
     7621 gctaaagtca gttcttacaa ggtataaatt taaaaatgga tcgtatttta catatttgtt
     7681 aagcttagta ttaggctgtt ttaacacagc aagtaaattt tcactgagtg caaaagctgg
     7741 cattccttca tagttaagca tgcttgcctt atttctttca taacctgcta aaaaatcttc
     7801 aaatttaggt ctttctatac caaaagacaa agtaaaaagc atacaaataa ttaaaatttt
     7861 tttcataatt tcatacctcc aaaaccgcct aaaacatcat tcgccatact tgaacgattt
     7921 tgcgcaacca tagccaaaac atcattaatt gcagaaataa gtaaaatttg caaggattct
     7981 ttatcttcaa gtaaagaatc atcaatgcta acatcgataa tttcaccctt tccattggca
     8041 cttactttaa caagtcctgc tccacttttg gcactaaatt cacgatttgc aagttctagt
     8101 tctatatttt ttgctttttc ttgaacttga tttaaaagtt ctcccatttt agaaaaatcc
     8161 atattttcaa acattgatta tccttgattt tttaaaattt cattaacaac tactttatca
     8221 ctaaaaggat attttatccc tttaatttct tgagtagttt catcaccttt gcctaaaata
     8281 acgactaaat cgtcattttc ttttagttct aaagcttttt ttatagcttc ttttctatct
     8341 tctatcatta aaactttttc ttttttagta aagcctgata aaatttcttc catgatggtt
     8401 tttggttctt cactgcgtgg attgtcactt gtaatgatag caatttttgc aaaatgttcg
     8461 acgatttttc ccattaaagg gcgtttggtt ttatctctat ctccacctgc tccaaaaaca
     8521 acgatgagtt ttttattttt aagagtgtca agcacttttt caatgccatc aggcgtatga
     8581 gcaaaatcta caatcacgcc ttttgctact tgttctaccc tgccacaaac cccgccaaat
     8641 ccactgatag ctttttccaa gtcttttaaa tcaggcttta cgagttcatt cacacaagca
     8701 ctagcaacta gaagattgta aagattaaaa agtcctagca agggcgagtc tatgtgaaaa
     8761 gtttgatttt tatttgttac aatagcacta atgccttctt ctaaagaata agctttgatt
     8821 tgatataaag caggattttc tatgccataa gtaaaagcat tacgcacatt aaatttaata
     8881 gccaaagcat ctttgttgat aaattttaaa ctctcatcgg taaaaaaaag ttcttttgct
     8941 tctttataat tttcaaaagt accgtgaaaa tctaaatgat cttgagtgat attggtaaaa
     9001 attttagcag caaaatttaa gccttcgatg cggttttgaa ttaaggcgtg tgagcttact
     9061 tccatgatga aaaaatcaca ttttttttga gtggctattt gtaggtattc taaggtttta
     9121 agaatagggg aggtggttaa ggatttttca tcgatttgtt catcgttgat aaaagctcct
     9181 cttgtcccac aaagcccaca cttataacct aaatccaata agatagaata aatcgctgct
     9241 gcggttgtgg ttttgccatt ggttcctgtg attcctatga tttgaatctt ttcatcgatt
     9301 tttaaaagtt ttttacactc atttacatca atgatttttg cacctttttc taaggcttga
     9361 gcgtgaaatt tagcattttg tgtggtttgc aaaaaaaagc attctttttc acactctaag
     9421 gtgttatctg taatgaatga attttcaagt tttaatttca cttttaaatc ccatgagttt
     9481 ttcttggagt ttgataaatc tatcatttgc ccaaaaatga ggcataacat tttctatgta
     9541 atttaaagtc atatctttat agccattatc aagtaatttt tccaaaaaat ctaaaaaatc
     9601 atcacgatta tcaataacta acttagtgct gttaatgata ttttcaaaac ttttttgaaa
     9661 gccaagttct tcttcgcttt ttaaaaaatc ttgataattt aacgcatgcc catcttcaaa
     9721 ttcgttttcc tgtttgtttt cttgtttttt aaattcaatt gtacttaaaa tttcttctaa
     9781 gtctttatca atgctagaga ttttgtaatg ttctatataa aaatcaaaaa gtaaagaagc
     9841 ttctttagga gattttaaag caagatcaca aaggcagata aaatttagca agcgtttatt
     9901 tttgcgtttt tcataagcca tagaaaaata catttttgca gttttaaaat ctttcttgta
     9961 aaaatgttca attccaagtt ttttataatt ttgcaaattc gtctgctccg ccgtttaaat
    10021 tgattatagt gatttctgga tgaatatcaa tcttaagttg cctttcaaga ccatatttta
    10081 gcgttgttcc actcgatgca cagcctttac aagctcctat taaatggaca taaacaatcc
    10141 catttttaat tcctaaaaat tcaagccctc cgccatcacg ttcaagcata ggcaagctct
    10201 tttctaaact tgctttaaca ggatttataa gctcttcatc actaaaaggc atcataattt
    10261 atccttaaaa atttttatat actttagcgt gattgtgttt aaaaaaaggt aaattaaggc
    10321 ttgaaattta aataaattaa aaaggttcgt cattattttt gtatgctaaa tcctaaatca
    10381 taagctgtaa agtttttgtt accaaaaatt ccatttaagt ttctaaatga ttgttgcaga
    10441 atttcttcgt ttttttcata ttttaagaag
//
LOCUS       DAPIWV010000063        10230 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.064, whole genome shotgun sequence.
ACCESSION   DAPIWV010000063 DAPIWV010000000
VERSION     DAPIWV010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10230
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.064"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            9..1076
                     /locus_tag="RJ272_001131"
     CDS             9..1076
                     /locus_tag="RJ272_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7382224.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIIFQLK
                     QFNIQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYAAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELTLYLSS"
     gene            1135..1551
                     /gene="tatB"
                     /locus_tag="RJ272_001132"
     CDS             1135..1551
                     /gene="tatB"
                     /locus_tag="RJ272_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDV7382225.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            1544..2281
                     /gene="tatC"
                     /locus_tag="RJ272_001133"
     CDS             1544..2281
                     /gene="tatC"
                     /locus_tag="RJ272_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDV7382226.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNIIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKVGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPVPKDKESNE"
     gene            2274..3302
                     /gene="queA"
                     /locus_tag="RJ272_001134"
     CDS             2274..3302
                     /gene="queA"
                     /locus_tag="RJ272_001134"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDV7382227.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLHDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKEDLKARVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(3291..4256)
                     /gene="lpxD"
                     /locus_tag="RJ272_001135"
     CDS             complement(3291..4256)
                     /gene="lpxD"
                     /locus_tag="RJ272_001135"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDV7382228.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(4253..4717)
                     /gene="ilvN"
                     /locus_tag="RJ272_001136"
     CDS             complement(4253..4717)
                     /gene="ilvN"
                     /locus_tag="RJ272_001136"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDV7382229.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4714..6414)
                     /locus_tag="RJ272_001137"
     CDS             complement(4714..6414)
                     /locus_tag="RJ272_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HDV7382230.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(6432..6875)
                     /locus_tag="RJ272_001138"
     CDS             complement(6432..6875)
                     /locus_tag="RJ272_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HDV7382231.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6887..7906)
                     /locus_tag="RJ272_001139"
     CDS             complement(6887..7906)
                     /locus_tag="RJ272_001139"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HDV7382232.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEACGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7999..8073
                     /locus_tag="RJ272_001140"
     tRNA            7999..8073
                     /locus_tag="RJ272_001140"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8031..8033,aa:Gln,seq:ttg)
     gene            8107..8182
                     /locus_tag="RJ272_001141"
     tRNA            8107..8182
                     /locus_tag="RJ272_001141"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8140..8142,aa:Met,seq:cat)
     gene            complement(8204..9076)
                     /locus_tag="RJ272_001142"
     CDS             complement(8204..9076)
                     /locus_tag="RJ272_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HDV7382233.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALEKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLHTKNENFIPDEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNCQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKTR
                     LENILKSYLNNLSK"
     gene            complement(9073..10141)
                     /locus_tag="RJ272_001143"
                     /pseudo
     CDS             complement(9073..10141)
                     /locus_tag="RJ272_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT         3379 a         1792 c         1410 g         3649 t
ORIGIN      
        1 gggtttttat gcatttttat atccatattc cattttgtga aagcaaatgt aattattgcg
       61 cttttacaag tttgaaaaaa aatgattatg aaaaagccta ttttaaggct ttaaaagaag
      121 atattatttt tcaattaaaa caatttaaca ttcaatcaaa tcaaattaaa accttattca
      181 taggcggagg aacaccaagt tgtgttaatg cgtataatta tgaagatatt tttaaaattt
      241 tatatccctt actagataaa aatgtagaaa tttcatgcga agctaatccc aactcagcaa
      301 cattaaattg gcttaaaaat atgaaaaatc taggagttaa tcgcatttct tttggagttc
      361 aaagttttca tcctaaaaaa cttcactttc ttggaagaat tcacaatcaa gaaatgatta
      421 tcaaaacatt agaaaacgca aataaagtag gttttaaaaa tatcaattta gatcttattt
      481 atgatacgaa attagacaat aaaaaaatgc ttgaatttga actcttacac ttaaaacaaa
      541 tcaaggattt aatcacacac cttagtgctt ataatttaac catagaatca aacacagcct
      601 ttgctaaaaa agaacatttc aaaaaaaatg ctcctaattt aatgaaattt ttcatcaaac
      661 aacttctaga gcttgacttt tttcaatatg aaatcagtaa tttttcaaaa accaaagccc
      721 aaatttgcaa acataatctt gcttattggc aaggaaaaaa ctacctagct tgtggattaa
      781 gtgcggtagg attttatgaa aataaacgtt tttatgcagc aaaaaattta aaaaattaca
      841 tagaaaatcc cacttttaga tctatagagc aactaagttc caaagacttg aatttagagc
      901 acctattttt aggacttaga agtatagtag ggattgatga aacaaaactc aatcaatggc
      961 aaaaagacaa aataaatata ttattaaaag aaaaaaaact tttttacaaa aataaaagat
     1021 attttaatcc taattttctc attagcgatg aacttacttt atatctctca tcttaaattt
     1081 aagtttttta agtaaaatat ttatttaaaa tatcaaatca aagagtaatg attaatgagt
     1141 tttggtgaaa ttatagttat tttagttgta gcgattttag tcttaggacc tgataaactt
     1201 ccagaagcta tagtacaaat agcaaaaatt ctaaaggctg taaaacgcaa catagatgat
     1261 gcaaaatcaa gcatagaaaa agaaatacgc atcaatgact taaaagaaga agctaagaaa
     1321 tacaaagatg aattttcaag cactaatgaa aatatacgca aaaaactcag ctttgaagaa
     1381 tttgatgacc ttaagagaga tattttagat aaaacaaagg tagatttaac ctttgatagc
     1441 agagatgata aagtaaaaaa taaccttagc ggacaaaatt taaatacaga agaaaaacca
     1501 aatcttagca aattagaaac acaagataaa aacggaaaaa taaatgtttg aagaattaag
     1561 acctcattta atagaactta gaaaacgcct ttttataagc gttgcttgca ttgtagttat
     1621 gtttattgta tgttttgctc tacgaagcta tatcttagat attctaaaag ctccacttat
     1681 agctgtttta ccagaagtag ccaaacatgt aaatataatt gaagtacaag aagccttatt
     1741 taccgcaatg aaggttagtt tttttgcagc ctttatcttt tctctacctg taattttttg
     1801 gcaattttgg aaatttgtag ctccaggact ttatgataat gaaaaacgcc ttgtggtgcc
     1861 ttttgttagc tttgcgagca ttatgtttgc cttgggggct tgtttttgct attttgttgt
     1921 agtgcctttg gcttttaaat ttttgattaa ttttggttta aatgaagatt ttaatcctgt
     1981 aattaccata ggaacttatg tagatttttt tacaaaagtt gttgtggctt ttggcttagc
     2041 ttttgaaatg cctgtaattg cctttttctt tgctaaagtc ggacttatag atgatagttt
     2101 tttaaaacgc cattttcgca tagctgtttt agttattttt gttttttcag cctttatgac
     2161 tccacctgat gttttatctc aatttttaat ggcaggacca ctttgcggac tttatggact
     2221 ttctatttta attgttcaaa aggtaaatcc tgtcccaaaa gataaagaaa gtaatgaata
     2281 aagacttact tctttcaagc tatgattaca ctctagctaa tgaactcata gccaactatc
     2341 ctacaaatcc aaaagaagat gctaggcttt tggtttttga tcgcaaaaac aaagaaattt
     2401 ttcacactac ttttaaaaat ttacacgact ttttacccaa ctgcgcgatt tttttcaatg
     2461 ataccaaagt tattaaagca agaatttatg gtaataaagc aagcggagga aaaatagaac
     2521 ttttcttaca tcaacctttt ttaaattctc acaatccact ttttctagct caaattaaag
     2581 ggcgcgttaa aaaagatgaa atcttatatt ttaaagagga tttaaaagcg cgcgttgtag
     2641 aacttttaaa tgatggtctt cgaaaagttc aattttttca aaatgataaa accttagaca
     2701 cctcaaatct ttacaacctg cttgacaaga taggacatat acccttgcct ccttatatta
     2761 aaagagagga tgaaaaaagt gatttgaaag attatcaaag tatctttgca aaaaatttag
     2821 gcgcagtggc tgctccgact gcaagtttac attttagtga gactatgctt gaaaatttaa
     2881 gaaaaaaaca cgaaatttat catttaacct tgcatgtagg agctggaacc tttaaaagcg
     2941 tggaatgtga aaatatacaa gagcataaaa tgcatagcga attttttaat attccgcagc
     3001 aagcatgtga aattatagat tctaaacaag ctattttagg cgtaggaaca acggtaacaa
     3061 gaaccataga atattataca agaactaaaa caaaaaatgg tttttgtgat ctttttttac
     3121 acccgcaaaa tccacctata agacaaaatc atcttttaac caattttcat ttaccaaaat
     3181 ctactcttat catgctagtt tcagctttta tcggtagaga acagtgttta aaactttatg
     3241 aactcgccat aaaagaaaaa tatcgctttt actcttatgg cgatgcgatg ctaatcttgt
     3301 gatttttctt taaaatttat tgctatttta gcttgaagtt ttagccaatc tttttgaagc
     3361 atgataggaa aacctccata aacacgcccg ccttctaaat ttttactcac accgcctctt
     3421 gcagctatag tgctaaaatc gcctattttt aaatgtccac tcgttgcact ttgaccaccc
     3481 ataataacat tgcgtcctaa ctcacttgaa cctgaaattc cagtttgcgc cacaatgata
     3541 caattttgac ctatattgca attatgtccg atttgaacta gattatctac cttagtacct
     3601 gctttgataa tagtactatc aaaaactgct ctatctatag ttgtacaagc ccccacttct
     3661 acaaaatctt ctaaaaccac gttgccatta tgataaattt tataatgttc gccgttttta
     3721 ttgtgcgcat aaccaaaacc gtcacttcct attacacaat tagcaagcag atgacatttt
     3781 ttaccgattt tagtatcatt ataaatcact acattaggat gaataatact ctcatcacca
     3841 atgctgacat tatcgcctat ataagctcct gccataatga ttacattttc accgatattt
     3901 acattatcac ctatataaac attaggcatg attcttgcgc tttttgcgat attttgtact
     3961 ttttctttag ctgtgcttat caaaggttta gcaaaaagct tgcttaaaaa agcaaaactc
     4021 aaatgtggac tttgagtaat caaagcttta gtatctttag gtactaaatt ttcatattct
     4081 ttagatacta aaatagcagc agctcctgtg tgaggtatat ctttggtatt tttctcacca
     4141 tcacaataag taagctctgt aaaatttgct ttcaataaag aatttaaagc actgatttct
     4201 atatcctcgc ctttatattc caagcttaaa aattctgcta tttcacttaa tttcatttaa
     4261 tctccatcaa aacagatcca ctgcgaacta tatcactagg attgtatttt ttaattgttt
     4321 ttaaaaaatt atcaatgcga tttgcatcat cagcaaccat taaaaacaaa aaattctcat
     4381 tgctatttgc aatagtacca ttataagctt tcaaaacggc atcaagtcca cctaaatttt
     4441 catttaaagg aattttcacc aaagccattt ctttgtcaat aaattcttca ctttctatca
     4501 ctttataagt aggaatgagc ttatgaagtt gtttgactat ctgctcaaaa gttctttcat
     4561 ttcctgaggt gactatatta atacgagaaa attctttatt ttccaaaggc gctactgtaa
     4621 gcgagtcaat attataacct cttcctgaaa aaagtcctac tatacgagat aaaaccccat
     4681 gctcatttaa aacaattact gataaaaccc ttctcattgt ctatcctttg cctttggtaa
     4741 aatcatatta taaatcgcac ctcctgcagg caccataggt aaaacatctt caaagcgatc
     4801 aatttttaca tttaaaagag aggttttatc actttttaaa gcttggctaa aagcttgaat
     4861 gaattcttct ttgcttgaaa tttcataacc ttcacaacca aaaccttgag caattttgat
     4921 aaaatcaggc tgagtgctta aatcagtttg tgaaaaatgc tctttataaa acatactttg
     4981 ccattgtctt accataccta aaaaggcatt atttaaaata atatttatag tttttatacc
     5041 atactcataa gcagtcataa gctcttggat attcattaaa accgatccat cacctacgaa
     5101 attaatcacc acttcttcac ccacggcaag ctttgcaccc aaagcagcag gtaaagaata
     5161 tcccatagtt ccttgccctc cacttgttgc aagttgtctt ggataattaa aaggataaaa
     5221 ctgtgccacc cacatttgat gctgacccac atcggtaata atccttgcat ctggagccat
     5281 tttcgcacat tcttcaatca cccattgcgg ttttaaaatc tcattgctat cttcataaga
     5341 aagcggataa agttcattat aacgctttaa agtttcgtgc cattctttaa aagttgtgtt
     5401 gaaattttcc tttttaagct cttctaaaag ctctttaaga acttctttaa tatctcctac
     5461 tataggataa tgcgcattga taatctttga aatagaacta ggatcaatat caacatgaac
     5521 tatagtcgca tgtttagcaa attcacttgt ttttcctgta atcctatcat caaatctcgc
     5581 tcctacactc acaagcaaat cacactcact taaagccata ttagcagcat agcttccatg
     5641 catgcctgcc attttaagat taaaaacatc atcacttctt aaagttccaa gcgccatcaa
     5701 agtttcaact gctggaattt ttgtaaattt tataagctct ctgatttgct cgcttgcatt
     5761 agaactgatg caacctccac ctaagtaaaa caaaggtctt tttgcttctt ttaaaagctc
     5821 tgcaaatttt ttaatttgct ttgagttacc cttataaacg ggcttataag tcttcatgga
     5881 aatttcttta gagtattccc aaagtcccaa agttgcactt acgtcttttg gcacatctat
     5941 atgcacaggc ccaggtctac cacttcttgc tatataaaaa gcctctttta aaatgcgtgg
     6001 aaactcttct atacaagtaa ctaaataatt atgctttaca caaggtcttg aaatgcctac
     6061 tgcatcaatt tcttgaaaag catctgtacc aataagagaa tttgccacct gccctgaaat
     6121 caacaccaaa gggatagaat cgctataagc cgtagctaga cctgtaatag tatttgtaaa
     6181 acctggtccg cttgtaacta tagctacacc cacttctccg ctcattcttg cgtaagcatc
     6241 agcagcatgc aaagccgctt gttcatgacg cactaaaata tgtttaaaat acttttgatt
     6301 gtaaatttca tcataaatat taagcgcagc gcctccagga taaccaaaaa caattttaac
     6361 attttcttct tttaaagcct cgcaaatcat tgccgaaccg cttaactctt tcataataac
     6421 actccaaaaa attattgtaa aagctcttta agtgctaaat taagtctttt gccatcaaca
     6481 ctcgcaccta attttatttt agcttctttc attaccaaac cttgttcttt tagtgaactt
     6541 acgcccaatt cttctataag ttgttttaag gctaaagtta actcctcatc acttagttgt
     6601 ttaggcagat aaatttcaaa aagacttatt tcattttgtt ctttttgtgc taaatcttca
     6661 cgatttgcct taagataaag ttcgattgcg tctttgcgtt ttttgatttc acttgcaatg
     6721 attttataaa ttctttcatt atccaactct attctttcat ccacttctat ttgcttaaaa
     6781 gctgcattta gagttcttaa actatctctt ttaaaatcat ctttttgttt cattgcctct
     6841 ttgatatcgt ttaaaatttg ttcttttaaa gtcatttttt tcctttttag ttaaaattac
     6901 aagctttaag atttaaacca aaaccttcta agcctatata gtctttatca caactttgag
     6961 ataaaagttt aatttcttct ataccaaaat atcttaaaat ctgtgctcct ataccatagt
     7021 ttttgtattg agtagtactg gatttttctc cttgcatgaa aactataacg ccaccatttt
     7081 cactaagaaa tttgatttgc tctaaaagtt ttgaaaattt atctgaagtt aaaagctcaa
     7141 aatcactacc actgatatga aatttaacat tttcacattt tttgatatct ttaaagcaaa
     7201 aagctatatg ttgggtttga ttatgatcac taaagataaa tttttctgct ttaaagcctg
     7261 ctaaaacact ttgacttttt tcttcaagct taataaggct ttcatgtttt aggcgatatt
     7321 ctataagatc gcttacggct atcatattta aatcatgttt ttggcaaaaa atttctagat
     7381 cttctcttct tgccatatct ccattatctt ttacaatttc acaaatcaca caagcacctt
     7441 ttaatcctgc taatttacaa agatcaaccg tgccttctgt atgacctgtg cgttctaaaa
     7501 ccccaccttt ttttgcgatt aaaggattga tatgtcctgg tcttacaaaa tcactcgctt
     7561 tagcattatc atcggcaaaa atttgtatag tcatatttct ttcataggcg ctaactcccg
     7621 ttgtagcatc ttttgcatct acggttatag taaaagcagt ttcgtggttt gaagtatttt
     7681 taggcaccat taaaggaagt tcaaattttt ttgccaaagt ttcatctaag gctacacaaa
     7741 ccacaccaca agcttctttt atcatgaaat ttactttttc ttgagtgcta aattgcgcag
     7801 gaaagattaa atcgccttca ttttctctat cttctgcatc taccataaca agcatttttc
     7861 ctgcttgtaa atccttaatc gcttgttcta cgctaacaaa tttcattttt atttcctcaa
     7921 aatttttaaa attataactt aaattgcttg acaaataaat taaaattcat tataatcaca
     7981 cttttaaaaa atatttattg gggtatcgcc aagcggtaag gcaacaggtt ttggtcctgt
     8041 cattcagggg ttcgaatccc tttaccccat ccacttctta ttttatattt caaagatctt
     8101 atatgccgcg aagtagagca gtggttagct cgtcgggctc ataacccgaa ggtcgggagt
     8161 tcaaatctcc ccttcgcaac cagttatgga tttaaaataa attttattta gatagattgt
     8221 ttaaataact ttttaaaata ttctccagcc gtgttttcag ttctatagga gctagaattt
     8281 ttatataggg gatccactgt ttaaccaaat gtaaaatttc atcttcatag gaaacttgag
     8341 tgcttaaagt atagcttgtt tcatcttcat caatgatttg acaattgctt agtatttctt
     8401 ttctaaaaaa atattcctta gcatttttat caagctttaa aatcacttct ttgctttctc
     8461 caagccagat attaggatca ttttggattt gttcctcaag tttttcatcg gggataaaat
     8521 tttcattttt agtgtgaagt tttgaaattt tatctaaatt aaaatgtttt aatttatcgt
     8581 tttcatcccc taaaagatac caaattccct tgtaatttac gagtttgtaa ggtttgattt
     8641 ggcgttcttt ttccttatag aaaaaattta atacattgtg tttgagtata gccacactaa
     8701 gatctttaaa aagctcataa tccacctttt gaaaaccttc attttttacc atcaaaactt
     8761 tatttaccct atggcttaaa agatcaacta taaagccttg atcgagtttt ggataaagct
     8821 cagcaatgcc acttaaggtg gcgaaattct gtatatcttt aaagcttaat ttttccaaag
     8881 caaagctttc taaaacatat cttccatttt cttttttaat aggcataaaa gtaagtcttt
     8941 cgttaagatc cctttgtatg gttcttgtat cgacattaaa ctcttgtgca agctcttggg
     9001 cgcttagact ttccccattg ttaaattttg ataaaatctg caccaagcgt atgcttaatt
     9061 tgtcgtattc tttcatgaaa tttccttgtg ggttaaaatt ctttttaaca aacttacgcc
     9121 ttctatgcct aaaatttcat ttctaagttt tttgacttca tttaaacttg gggcttttgc
     9181 atgaacggct tcattacgga tttcttgaat gatagtaaga ctttttgaaa aaggataatt
     9241 gataaattga gttaaacttt ttcctaaatg atattggata ttttcatgtc tgagtagaaa
     9301 tttaatactt ccaagattgg gtttttgggt aaaaaaatct ttaagtataa aagatttgcc
     9361 ttggacatta taagttaaat cataaaggct aagatctttc atacaagctt ttaaaagaac
     9421 ttttttggca aaagcgtaaa tttcatattc taaggttttg gagtatttga ctacaatgct
     9481 tgtaaaatca tttaaaagat cgttttcgct ttgtaaaagc tctaattctg catgaatgat
     9541 attgcttatg ctatcagggt gcaagagata aaaaatcctt ttgccaaaaa caaagcgtat
     9601 gaaattttct tgcatggcta ggtattcttt gcttttatac acgcttagat aatgcttttc
     9661 atctcctaaa aaataaaaac actcttcttt taatctcaca ggcaaaggat aggtgtaatt
     9721 attgccataa atggcatagg tgtgatcgtt tggggtgatg aaattggcta aaaatttatc
     9781 tcttaaaaga ctaaaatctt ccctgactaa ttctcttaaa tcactgatga taaaaaagtc
     9841 ttccacttct aaattttttt tctttataat aactaggaat caaactttca tcgacatttt
     9901 tagaaatttt taccacctta gcgacaaata aattagcata atcgcttaaa aaaagttgca
     9961 agaaattttc ttcatttgta ctttggtaaa tttcttctaa gaaattttgc ttttcttgat
    10021 cgttgagttt tgatttgatt ttgccaaagg caacttggga tttttcttgt aaaatactta
    10081 aatgttgctt gatgacatct tcttgatagt agggattata aaggattaaa aggtggttca
    10141 tgctttgcct tattttagga tttctttaaa aggcttagat ttattatgag cttcaattaa
    10201 taaaatttta caagtgtcat ctagatattt
//
LOCUS       DAPIWV010000064        10221 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.065, whole genome shotgun sequence.
ACCESSION   DAPIWV010000064 DAPIWV010000000
VERSION     DAPIWV010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10221
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.065"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(156..713)
                     /locus_tag="RJ272_001144"
     CDS             complement(156..713)
                     /locus_tag="RJ272_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HDV7382234.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPHS"
     gene            complement(710..1555)
                     /locus_tag="RJ272_001145"
     CDS             complement(710..1555)
                     /locus_tag="RJ272_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HDV7382235.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1556..2680)
                     /locus_tag="RJ272_001146"
     CDS             complement(1556..2680)
                     /locus_tag="RJ272_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HDV7382236.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2689..3000)
                     /locus_tag="RJ272_001147"
     CDS             complement(2689..3000)
                     /locus_tag="RJ272_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDV7382237.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(3014..3883)
                     /gene="sucD"
                     /locus_tag="RJ272_001148"
     CDS             complement(3014..3883)
                     /gene="sucD"
                     /locus_tag="RJ272_001148"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDV7382238.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3893..5056)
                     /gene="sucC"
                     /locus_tag="RJ272_001149"
     CDS             complement(3893..5056)
                     /gene="sucC"
                     /locus_tag="RJ272_001149"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDV7382239.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTTEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(5057..5959)
                     /locus_tag="RJ272_001150"
     CDS             complement(5057..5959)
                     /locus_tag="RJ272_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7382240.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(5956..8160)
                     /locus_tag="RJ272_001151"
     CDS             complement(5956..8160)
                     /locus_tag="RJ272_001151"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDV7382241.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILAAFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNIA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLKGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCSNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8277..>10221)
                     /locus_tag="RJ272_001152"
     CDS             complement(8277..>10221)
                     /locus_tag="RJ272_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HDV7382242.1"
                     /translation="RVNKRIELPQSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLD
                     NISASGYVNNVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLY
                     DLFDEKKVGIYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDK
                     GEISYSGILALENASISLADFNITKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQ
                     KQQGNFNTQISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEAN
                     LSNPKILFSFSPLLKKFGFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYEN
                     DSFDIVKNKGIMEIHTQSDTASAKISSNNKEIHLKNLSYIYRKGSNSSNSTFDISTNT
                     QNISFGGANVALILPDSNKTLAFDRVEADLKGNALDLKGSRGNAKFELYYSSNDVNLN
                     VSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGVNQLISF
                     IDTVPSLLMFKSPTFNQKGLSLYDGKIIFNRKKDLLSVLAINLNGDSVDIYGLGSANL
                     RLNTVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTEIL
                     TDTLKTPFNLIKNIIQLPANLLN"
BASE COUNT         3243 a         2052 c         1272 g         3654 t
ORIGIN      
        1 tcatcaaaaa aatccattaa ttttccttga aaatataagt ttttgattat aaaattttaa
       61 tcgttaaaag tagctaaatt aaaataatta aaatttaaat tttatttgca atgtgtaaaa
      121 ttttagaagt taaattccgc atgatgcgga atttattatg aatgtggttt tgcttgagtg
      181 gcgtatttta cacccagatc aaaagcttta gcatttgcat cacgagtttt tgcaggaacc
      241 atatgaagca tagtttcttt taaaacatct aaatctatac atttactcat ataagcagca
      301 attgcaagtg caacaactga ttgagtagcc acatttccta cctcatcttt agctatggta
      361 ataataggga tttcaaaaat ttgccatttt ttataatctt cactttcagg atgtactaaa
      421 tttggctcta caactataat acctccttct tttacacccc cacgaaaacc tttataaccc
      481 ttatctgcag tcgaaagcat aaaatctact tccccttcta cagcataagg aaataaaatt
      541 tctttatcat cgatgataat atccacctta gtagggccac cacgcacttg tgaagtgtaa
      601 gtagaagcct taaaagcttg acgaccttct ttaatggctg cttctgctaa aatttctcct
      661 gcggtgataa caccttgtcc gccttcaccg ccaaatctta attgatattt cattttaaag
      721 ctcctaaatc caccattctt ttttctttgg ctgcacgacg tacttcttca taagcgtggc
      781 agtattctgg ctgagaatta tcttcatgta aaattcctgt tggaaattta tcttttcttt
      841 cttcaaaatc catgctttca aatttagctt tatccacaac gcgattttta atccaatcaa
      901 gcatagctac agcttcgccc attttgtttt ttctgcctag attgatatga caatttgaaa
      961 aaacatctac aaaactataa cccttatgcg ctaaagcctt ataaattaaa ttttcaagct
     1021 tattagcttc gatcacatta ccccttgcca caaaagaagc tcctgcagct ttagttaatt
     1081 cacacgcatc aaaattaggg tcaatatttc caaattgagc tgttactgta taaaaacctt
     1141 ttggagtagt tggagaagtt tgagaattag taagcccata aataaaattg ttgattacaa
     1201 tatgagttaa atcaatattt ctgcgacaac catgtatagt atgatttcca ccaattgcca
     1261 aagtatcccc atctccgctt actacaataa catgtttact aggattggct agtttaatgc
     1321 ctgttgcata agctattgct ctaccatgag ttgtatgaac tgtattacaa tttacataag
     1381 aactcattct gccactacaa cctatacccg aaacaagaca aacatcatcc atattccaac
     1441 caagtttttc tatcgcgcgg ataatacatt ttaaaacaac accatcgcca catccccaac
     1501 accattgagt aggcatttta tctactctta gatattcatc ataattaaaa gccatttata
     1561 tattctcctt taccttagca ataatttcac ttggagtgat aggacgacca tttgcacggt
     1621 gcaaactaat aaaatcgcga cgcgaagtta ctctttcaat ctcttcaaga tattgtccca
     1681 tattaagctc gcttaccatt acttttttaa atttgcttac aacttcagcg atttttttct
     1741 cagccactgg ataaagagta atcggacgga aaagccccac tttaatccct tgctctctta
     1801 atctttgtat agcttctttt gctgaacgac tcacgcttcc ataagcaatg attaaaaatt
     1861 cagcatcatc aagcatatac tcttcataag tacaaatatc ttcttgattg ttttttattt
     1921 tacctatgag tctttccata ttttttttca ctataactcc atcttcagtt ggaaaaccta
     1981 tatctccatg atgaagtcct gtaacatgat aacgataacc tgtaaagaaa ggatttaaag
     2041 ttgcaggctc attttctcct gctgcataag gtttataatc ctttttatcg ccttcaaatt
     2101 ttttacggtt atatacttta atatctttta aatcaggtaa aaccgcttta ccattcatgt
     2161 gccctacagt ttcatccata agtaaaaata ctggagtcat atatttttca gctaaattaa
     2221 acgctctaat ggtttctgta taagcttctt caagacttgc aggagcaata gcaatacttg
     2281 caaaatcccc atgagttggt gctttagctt gaaacaaatc tccttgtgct acacgagttg
     2341 gaagacctgt tgaaggacca cctctcataa catttacaat cacaagtgga atttcagcaa
     2401 taaatgcaag tcctatttgc tctgctttta aagaaattcc tggaccgcta cttgcagtca
     2461 tggattttac tccactcatt gccgcaccaa tagccacgct aatacctgaa atttcatctt
     2521 ccatttgtat aaaagttcca tcatttgcag gaagcatatg gcttaattca tgagctatct
     2581 cactactagg agtaatagga taacctccaa aaaatttaca tccacaatca atcgcagctt
     2641 tggcgattaa aacattacct gttgctataa cttctctcat tatttttcct atgctaattt
     2701 tttgtatttg ttatttttta cggctacagc tctatcttta gcctcagcag taagtttggc
     2761 aaatttaaat tcatctcttt ttgccaccat aatagcaaaa tcagggcaat gtgtctcaca
     2821 ctcggtacag cctatacagg attcagggtg taccacctct atcatttgtc ctaaaaccgc
     2881 atgcacatca tcgcgcatag ctaaaacccc agcggggcaa tagctaacac aaatattgca
     2941 tgctttacat ctatgctcat ctacccaaac aggggtatct tttggagctg tcatactcat
     3001 gttttttcct ttattaacct aatatttttt gaatttcttc accaattaaa gccggagaat
     3061 ccaccacatg aattccatag ctttttaaag cttctttttt agctgcagcg ctttcatcag
     3121 cacttcctac tatggcacct gcatgcccca ttcttttgcc tttaggagca gttgcacctg
     3181 caatgaatgc taccacaggt ttgctaatat tttctttaat aaatttagcc gcttccactt
     3241 ccaaactacc accaatttca cctatcatta caatagcttt agtttcatca tctttttgga
     3301 attcacttaa aagttcttta taagcaagac ctatgatagg atcaccacca attcctactg
     3361 cagtagaaat tccataacca ccttgaacta cctgattagc agcttcataa gttaaagttc
     3421 cactttttga aataagcccc acgcaacctt ttttaaaaat aaaacctggc ataataccta
     3481 atttgcattc ttcagaagtg ataatacctg gacaatttgg tccaatgatt ttcataccct
     3541 ttttattggc atattgctta gcaaacatca tatcttttac aggcgtatgt tctgtgatta
     3601 caactgcaag cttaataccc gcatcagctg cttcaatcac gctatcaccc acagcaaaag
     3661 cagggacaaa gatcaagctc acatcagcct ttgttgcttt aaccgcatct gcaacggtat
     3721 caaaaactgg tttacctaaa tgagtttgtc cacctttatg aggggtgaca cctccaacta
     3781 tatttgtacc ataagccatg cattgctcag cgtgaaaagt tgcttcttta cccgtaaaac
     3841 cttgaactat tacttttgta tttttattaa ccaatatact cattttctat ccttatccta
     3901 ctaaactttt tacaagctct gcaccgtttt taagattggt tgctgctttg atatttttaa
     3961 gatttgaatt atctaaaatt gtctttgctt ctgctgcgtt agtgccatca agacgcacta
     4021 caattggaat atttacctca acattcttag tagcttctaa aattccattt gctatcctat
     4081 cacaacgaac aataccacca aagatattga taaatataac ttttacattc ttatctctta
     4141 aaatgatttc aaaagccttt gcaacagttt ctggagaagc tcccccacct acatctaaga
     4201 aatttgcagg ttttgcacca ctataattaa taatatccat agttgccatt gctagacccg
     4261 caccattcac catgcaagct acatctccat ctaatttcac atagcttaag ccaaattcag
     4321 ccgcttctct ttcagcagga ttttcttcag taatatctct aagttcagca atttcaggat
     4381 gacgataaag cgcactatca tcaaaactgc attttgcatc aagggcataa aaatcccctt
     4441 ctgtagtttt aattaaagga ttgatttcaa gcatattcat atctttatcc atgtaaagct
     4501 tataaagttt agctatcata gaaatgagtt ttttgccttc atctttatca agtcctaaaa
     4561 ctctcgctac ttcaagtcca tgaaacattt taaaaccaat ttgtggatca atgcctactt
     4621 ttgcaatttt ttcaggactt tctttggcta ctttttctat atccatccct ccttcacttg
     4681 aagcgataat ggtaatttgc tctgccattc tattaaacaa aatagccaaa taatactctt
     4741 ttactatatt agcgccactt tctatataaa gtttttgcac gagcttacct tcaggtcctg
     4801 tttgatgagt tactaaattc attcctaaaa ttttacttgc gtaatctttt acctcatcta
     4861 aattcttagc gattttaaca ccaccaccaa gaccacggcc tcctgcgtga atttgagctt
     4921 taactgccca aacactaccg cctaattctt tagcattagc cacagcttca tctacgctaa
     4981 atgcaacttt tccctttaag gtagggatac cattgtctgc aaaaattgct tttgcttgat
     5041 actcatgtat gttcatttat tctcctttat attgatattt gattaaagat ttttctaatt
     5101 tgtctttttc ttgcaaacta agatccattt tcatgatttc aatcacacct tcaagtccta
     5161 atcttgccat aactcccaag gctttgtttt gcactccaaa ttctccatgt aaaatcacac
     5221 tcataggtaa aaactcgcca cttcttatag actcaagcat tcttatacaa gcactagcag
     5281 gggctaaata agctgaagtt ttaagatgtt tgattacttt agctccacct gttttaactt
     5341 cattttccaa atcatcaaat tcttcttcat ttaaaaattc gcttatattt ttatttttaa
     5401 cacttgcgta agattttacc aaaaccatat catcattatg aaaaccaata agtcttgtat
     5461 ccacgcttga cattttgaca ttaagttttt tggcaagctc atacttaaat cttgcattgt
     5521 ctaaaactcc cgccatggct ataattttct ttgatgaaaa aatcccgctt tcataaagag
     5581 tattaagtag aaaatctaca ggattagtta aaataataaa aagcggatct tctgtaaaat
     5641 ctttaatttt tttagcacaa tcaagcataa tgcttgtatt taactgaagc aattcttctc
     5701 tactttgccc atcttttcta gcaaaacctg cactaaaaag cactatatct gaatttttgg
     5761 tatgagtata atctttagtg caaagtaaat ctatatttaa atttaaagca gctatacttt
     5821 gagtaagttc tagttctttt gcataaagca aatcctcatt gatatctact aaaacaattt
     5881 catttgctat ttctcttaaa atcaaagcat aagctacgct tgaacctaca ttgccagccc
     5941 ctataacagt gattttcatc tttgtcctat tttttctaaa atagcgttaa aagttgcact
     6001 tggacgcatg attttatttg ctttttcatc atcaaattta taatacccac ccaaatccac
     6061 tttcacacct tgtgcatcgt taaattcggc tctgattttt tcttcattag aagaaagctc
     6121 tagggcaata tctttaaaaa agctttgaag ctccatatca cttgcctgtc ttgctaaatg
     6181 atttgcaaaa tacattgcta aataaaaatg acttgttcta ttatcatctt ctttaacttt
     6241 tcttgatgga gctttattat tttcaagcca ttcgcctata gcctcatcaa gacattctgc
     6301 taaaacctta gctttatgat tgctacattt atttgcataa aattccaaac ttgcttgcaa
     6361 agccaaaaat tcacccaaac tatcccaacg cagatgattt tcttcgacta attgttctac
     6421 ttgtttaggt gctgaacccc ctgctcctgt ttcaaacata gctccaccct ttaacatagg
     6481 cacaacagaa agcatttttg cacttgttcc aagctctaaa ataggaaaaa gatcggttaa
     6541 ataatccctt aaaacattac ccgtgataga aataacatct ttaccttctc ggattaactc
     6601 taaacttctt aaacaagctt cttttggagt taaaatggct atatttttac ccttttcttt
     6661 taaacgattt tgtaccaaag ttatcatgat tttattacta gctcttttgc tatctaacca
     6721 aaaaatagct tcggctccac taagttctga tctttctata cctaaatcaa tccaatttaa
     6781 cactgcatca aatttagcct gattagctct ataaatatca ccttttctaa ccttatgttc
     6841 taataaaact ttaccgttag aaactatttt aaaagttcct tcttctttag ccacaaaggt
     6901 tttatcgtgc gatccatatt cttgagcttt tttagccatt aaacctacat tagatacact
     6961 gccaagtttt gaaggattta aagtaccatt tttatgcaaa tcttcaataa ccgcctcata
     7021 aatagttgcg taagtttgat caggaattac ggcatttgtg tccttttcct taccttcctt
     7081 atcccacaat cttgcgccat ttttaagcat tgcaggcata gaagcatcaa cgataacatc
     7141 gcttggaaca tgaagatttg taatgccttt atctgaattt accatagaaa tatctgcaga
     7201 tttagctaaa atttcattgt atttttttaa aatttcatct tttttgcttg aattttcgat
     7261 cttacttaaa agctcactta aaccattatt tggattaatg cctaattttt caaattcatc
     7321 ttgaaattcg ataaataatt ctttaaaaaa tacttttacc gcataaccaa aaagtatagg
     7381 atcacttact ttcatcattg tagcttttaa atgcaaagaa aaaagcacat catcatcttt
     7441 gcttgcttta atttcttttg cataaaattc ctgaagtttt tgcacatcca taaaagtagc
     7501 gtctaaaatt tcattttttt caagttttaa gccctctttt aaaatttctt ttttaccatc
     7561 aacgcttgta aattctatat tagccacaca atcttgatcg attaaaaccg ctttttcatt
     7621 agagaaaaaa tccccttctt tcatgtaaga aacacgagtt tttgagtttg gattaaactc
     7681 aaccacacga taaggattgt tttttgcata atcttttacc gcttttgttg aacgacgatc
     7741 tgaatttcct tgtcttaata caggattaac cgctgaacct aaaacttttt gatattttgt
     7801 tttaatttgc aattcttcat cattttttgg ctcatctggg taatttggta acatgtaacc
     7861 cttatcttgc aattctttaa tcgccgcctt aagctgagga atagaagctg aaatatttgg
     7921 ggttttaata agatttgcat ccgatctttt gacaagctca cctaaaagtt ctaaagcatc
     7981 ttcacatctt tgctcctctt ttaaatactc actaaaagca gctaaaatcc ttccagataa
     8041 agaaatatcc gaggttttta ctcctatatg tgccctactt aaaaaagctt tcactatagg
     8101 caaaaacgaa taagtcgcaa gagctggcga ctcatctgtt aaggtataag taatttgcat
     8161 ttttagtcct ttaaaatact tatttttatt ttcattttta agtatattac aaataaaaaa
     8221 aaatgcaaga gtaagtttaa agtttgtttt agttttcaaa caaactttaa atatttttaa
     8281 ttaagtaaat tagcaggaag ttgtatgata tttttaataa gattaaaagg ggtttttagg
     8341 gtatctgtta aaatttcggt atgaaattta gggtcatcta tacttccatc tatttttaag
     8401 tttgtgctaa tttcttgatt tttacctaaa attacataat ttaaaattgg aaccttggat
     8461 atagcttctg aagctgattt taaagtttta agctctaagc taaaatccac tgtatttaat
     8521 cttaaatttg ctgatcctaa accatatata tctacactat cgccatttaa attaatagcc
     8581 aaaacactta aaagatcttt ttttctatta aaaataatct ttccatcata caagcttaaa
     8641 cctttttgat taaaagttgg agatttaaac atcaataaac ttggtacagt atcaataaag
     8701 gaaataagct gatttacacc ttttaaatcc ttcacataag tgtttttaaa atcgatctgt
     8761 ccatcaaaat actccaatcc acttcctttt atacttaagt taaacactcc atcttgaaca
     8821 gcttgttttt gtaaaaactc atttaaataa ttatcatcaa tattgctaac gtttaaattt
     8881 acatcattag aagaataata aagttcaaat tttgcatttc ctctagaacc tttaagatcc
     8941 aaagcattgc cttttaaatc agcctctacc ctatcaaaag ccaaagtttt attagaatct
     9001 ggcaaaatta aagctacatt tgctccacca aaactaatat tttgggtatt agtagaaata
     9061 tcaaatgttg aatttgaaga gttggaacct tttctataaa tataacttaa attttttaaa
     9121 tgaatttctt tattattaga acttatttta gcacttgctg tatcactttg agtatgaatt
     9181 tccataatgc ccttattttt tacaatatca aagctatcat tttcataagg agtttgaccg
     9241 ttaataagta aattattttt aaaataagca tcattaacgc ttgcattaaa atcttcaaaa
     9301 tttaaagttt tataataaac atttttagca tcgataaacc caaacttttt aagcaatgga
     9361 gaaaatgaaa ataaaatctt aggattacta agattagcct caagtccatc tttaaaattt
     9421 aaaatcaaat tccactgagg aatgctaatg ttaacatttt gcgaataatc taattttact
     9481 tctacatttt gattttttaa atctaaaagc tctccattgt caaaataaag ccttgaaatc
     9541 tgagtattga aatttccttg ctgtttttgt aagtcaaatt tagcattaaa atcagcttct
     9601 aaaaagccat ttttaacact ggcattttct atatttaaat cattttgatt taattttaca
     9661 aatgcttttg taatattaaa atcagccaaa gaaatactag cattctctaa agctaaaata
     9721 ccactataag aaatttcacc cttatcatga aaatcaattt taagctccaa atcactttta
     9781 atttttccgc ttttttgata aaaaggtagt gaaaaatgat aatcctctaa agctttagca
     9841 agtttttcgt caaattttag attatcagac ttaatgcgca aataaatccc aacttttttt
     9901 tcatcaaaca aatcatatag ataaacctta ctagaactta aatcagcacc attatagaaa
     9961 gctttattaa agacaaaatc gagcttttgt ttgtttaaat ttaaatcgag ttttggaatt
    10021 tcaatagcat tcattttatc atccaagcga actttgacat tattaacata acctgatgca
    10081 ctaatattgt ctaaataata attatcttta gtaaaatcta taaagccctg caaataatct
    10141 aaatgataaa attctccctt agccctatat gctacccaaa gatttaaact ctgcggaagt
    10201 tctattcttt tattaactct t
//
LOCUS       DAPIWV010000065        10149 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.066, whole genome shotgun sequence.
ACCESSION   DAPIWV010000065 DAPIWV010000000
VERSION     DAPIWV010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10149
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.066"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..495
                     /locus_tag="RJ272_001153"
     CDS             <1..495
                     /locus_tag="RJ272_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDV7382243.1"
                     /translation="RKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSFEGKVVRIIDGD
                     TIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEIIYKNKDTYGRIV
                     AIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKESNPIEPYKWRK
                     HNKF"
     gene            504..677
                     /locus_tag="RJ272_001154"
     CDS             504..677
                     /locus_tag="RJ272_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382244.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(678..1256)
                     /locus_tag="RJ272_001155"
     CDS             complement(678..1256)
                     /locus_tag="RJ272_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382245.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(1329..2219)
                     /gene="cmoB"
                     /locus_tag="RJ272_001156"
     CDS             complement(1329..2219)
                     /gene="cmoB"
                     /locus_tag="RJ272_001156"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDV7382246.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(2302..4027)
                     /locus_tag="RJ272_001157"
                     /pseudo
     CDS             complement(2302..4027)
                     /locus_tag="RJ272_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(4085..4225)
                     /locus_tag="RJ272_001158"
                     /pseudo
     CDS             complement(4085..4225)
                     /locus_tag="RJ272_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4490..4814)
                     /locus_tag="RJ272_001159"
                     /pseudo
     CDS             complement(4490..4814)
                     /locus_tag="RJ272_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344367.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4816..5346)
                     /locus_tag="RJ272_001160"
     CDS             complement(4816..5346)
                     /locus_tag="RJ272_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HDV7382247.1"
                     /translation="MVGKYVTEYDSNNNHGRYFFTSTIEKPAYLYVYSPNDFFTSLAV
                     NGPSMTGATKSLVGTGAIKNRENYKETSDLITKDNISNEVLNSIFNDLKFNSSVDISD
                     LSKFYKNGKILTADELTSINQSMDFITALYGQTQDSNNATFANALKEVLGNSYGDLGK
                     ANQVIIKTKEILSQNS"
     gene            complement(5467..5806)
                     /locus_tag="RJ272_001161"
                     /pseudo
     CDS             complement(5467..5806)
                     /locus_tag="RJ272_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872973.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutination protein"
     gene            complement(6169..8181)
                     /locus_tag="RJ272_001162"
                     /pseudo
     CDS             complement(6169..8181)
                     /locus_tag="RJ272_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8609..8983
                     /locus_tag="RJ272_001163"
     CDS             8609..8983
                     /locus_tag="RJ272_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7382248.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERVRSEIFFNKKVDIFDAS
                     KGHFLLTKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILFFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(8975..10126)
                     /locus_tag="RJ272_001164"
     CDS             complement(8975..10126)
                     /locus_tag="RJ272_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382249.1"
                     /translation="MLNAKEQKLVDVKPVENFYPKLSVQECNTNCLFDLLESRLYLSF
                     LSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSS
                     IAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGFTLKGANELKNYSG
                     NMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAIFSDGSALSSNLNS
                     RILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNAPLIKTALASSQLRIYNIH
                     PYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAY
                     ATSIGVDYFYTEFLNKKSENLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT         3294 a         1482 c         1510 g         3863 t
ORIGIN      
        1 agaaaattat taagtgatcc aaaaaaactt ttttctgtat taatcttcac tcttgtagtt
       61 gtttttatcc agaactatat tgcccaaaat tctagttttg aaggaaaagt agttagaatt
      121 attgatggag atactataga agttaatcat gaaaacaaac tcgctagaat aagatttttt
      181 ggtatagatg caccagaact taaacaaagt tttggaaagc aatcaaaaga agctttaagt
      241 agaattttaa gcggcaaaca agttgaaatt atttataaaa ataaagatac ttatggtaga
      301 attgttgcta ttgtaaagct taatgatgtt gatattaatc gatttttggt aagcaaaggc
      361 tatgcttggg ctgatactta ctatagtaac gcttatacca aagaacaaga aaatgctaag
      421 aaaaatcatt taggtctttg gaaagagagt aatcctatag agccttataa atggagaaaa
      481 cacaataaat tctaaggaaa aacatgaaaa aatatacttt aatggtgcta ttagctttag
      541 gaatttctgg atgttttgta aatgaaagag ggatttcaaa tcgtttttat gatgattgta
      601 aagagtatta tgatggaagt ggaacttatc ataaggattg cccaaaaaat tgggtagata
      661 ttaaaatgac tccttgatta ttttccaccc acagaggcca ttaatgcagc tgctacagct
      721 tctggattgt tgattttggc accttgttct tgattttctg taggtttaac agtgttaagt
      781 ggcggacgct tgagtttaaa tatatgctca tcggtgctaa caacttgtat cgttccttca
      841 aacattttaa cttctttaac atgtccaacc acttttacat ctcttttttt ggaggtttcg
      901 tcaaaaagtg catgagcttc aagttctaaa acatcgccta atttaagcgg agcataaaaa
      961 aaacactttg atccaataat cactgaaaat tctttattga tagaggcttg tgctacatag
     1021 tttgccgcag cgaaaataaa ggcatcaaaa atcaatcctt gatcatctgc taccatttcg
     1081 cttgtggtta ttaaaattga tttggcatag tttttatcaa tttctataat ggttccagca
     1141 agcgaggtgt ttaattcagg acaagtgagt aattctgctc taacgcgaga tatatcttct
     1201 gcagatgcgt attcttcaag ttgtgcatat tcttcaaaat tatctttttt tgccatatct
     1261 aacctttaaa ttctacttat ctacttcaaa atatctaatt ttcaatatcg gtaaaaaata
     1321 aaaagaattt atattttaat gcgtatataa actcttttgg gtgcttcata gccttcaatg
     1381 gtaagatttt tatcctttgg atctaagaaa ttttccagcg aaaaagagtc tatccattct
     1441 gtttttcttt gttcgttttc atcggttttt tttgtagcca aaacttcaaa ttctttaaat
     1501 cctgctcttt cacaccagtt ttttaatgca ctaatgcttg gtacaaaata aatatttgga
     1561 attttagaat aagttttatt aggcacaaga gcgatttctc tctcatcttc tatatacatg
     1621 gtatctaaaa aaacaactcc atttttatta agtcctgctt ttaaatcttt tagcattttt
     1681 ataggatcac ttctatgata aatcacccca agacagaaaa tcacatcaaa tttcaagcca
     1741 tagcttggaa gatcttctac gcctaaaagt tcgtatttta taggagtttt agctaaagcg
     1801 ttaatgagtt caaattgcaa acggtatttg atagaaggat caaaacctat gagttttgca
     1861 ggattaaatt caagcatttt aaacatataa taaccattat tacagcctat atcagcaacg
     1921 catttttgag aaatttcgtt catgaaaggc tttagaatgt tgaatttaat aaaactttgc
     1981 cattctgtat cgatgaaaag atcgtctatt ttaaaaggac cttttctcca tggtttaagt
     2041 tcttttgcta tagctaagat ttcatctttg gcttgagaat ttgtagataa atttacacta
     2101 tcatctaaag aaaaattgca agcaagattg agagctttaa gttcttgaat tttagcgtat
     2161 aaagggtgat ttagaaattg tttttcaagt aaattttctt gcatttttat ccttgacatt
     2221 tgcttttaat gctaaattat aacattaaaa gcttttatgg caatataaat tatatgcatt
     2281 aaatatttga tcaaaaataa ctcaaaaata ctttctaaag attacataag ctttagaact
     2341 ataatcatca tctagtttat atttctttaa agctctagct aaatcaagct tgacataaaa
     2401 attccctgtt ttattataaa gcagttgtaa accataagca tccatatagt ttgtttcact
     2461 tgctctatat agtttagaat cattctcata ccaagaataa cctatatcat aaaaaggagt
     2521 gatataaaaa tcttttaaag gagtagccat tctaagtcca aagctagcca ctacagcatt
     2581 atctccttct ccatctccat tattataagc ccttactcca taaggatctc ctaaagatat
     2641 agtttcacta ctatctaatg tagctccatt gacaacttgt tgataattta aactaaaaag
     2701 atgagtaaaa gtatcattaa agaaataagc attgttaaga ttgacattga gtttagcaaa
     2761 ttttccaaag ccatctccat ctgttttaga actcattcct aatatagtag ttcccccatc
     2821 tttaacatta ccatagctta cattagcact ataagaaaaa ctatcattac taatgccatt
     2881 ataaactcct tctataccaa agcttatcgt atcagagctt ttatctatag tcatgatatt
     2941 taatcttgaa ttactaagct ttttatgata ataacttgaa gttaaataaa aagaattata
     3001 agtcgtaatc cccaaaggat attttaaatc tatacctaga ttttcagaag ttcctataaa
     3061 gtttgcattt ttataagctc ctcctaaagc atagtttctt ttagaataac ttggagtgat
     3121 ttttaaattc cctaagaaag tagtatagct tataccatag ttagtttgtg cttcatcgct
     3181 tctttgcaaa taagcattaa gactatctcc ttgatgagct atgttattaa aactcatact
     3241 agcaccaccc ctattatctg cctgattctt ttataccgta attatcccca taaaacaata
     3301 cagaaacgaa gctatcacta ggggtagttt ctatcactat atctgtgtca cctggattat
     3361 ctcctgcttt taaagaagca agagtttgta tcccatacat ttcattgact ttataaaccg
     3421 catcttctac taatttagta gtgatgattt cacctttatg attaggtaat ttgctttcta
     3481 tagcataatc tcttacacta gaattgtttt gaaccacata tttacctaaa acacctaagg
     3541 tgatattgat ttgaatttga tcttttagtt cttgttgtgg gatataagct gtagcagcag
     3601 gataaccact agcttgaaca taataagaaa taatattggc tatatcttgt aagtcttgaa
     3661 ctgaaatact ttcttttttg taatcgttta aggcttcttg taaaacttgc tcatctaaac
     3721 ctagatcttt aaagtttatg tttttattgg taatatgaaa gttaaagcta actttatgaa
     3781 ttgattcttc tttagaagta ttttttaaag aaggagtgtt tgaatttggg gttttagttt
     3841 ttaaagtatt atcattagac aagttaggtt gatttttttg agtgtttttc tttgtgttag
     3901 tggtttttga attattatta tcactagtat tagaatgatc tatgataatc actccatctt
     3961 ttacttttaa agtgttattg tagtttttta agttagcatc ttctttataa ggagattgtt
     4021 ctaacatttg tatggttttt tattatcttt aatatcacta gcataaaggc ttaagatagc
     4081 taaactagat agtaagataa tgcgtttcat ttaaattttc cttagtgttt gtttgatttt
     4141 taatctttaa actttgtttg ttttattaat ttttaacaag atccaaaagg cttttaacct
     4201 tttggatttt aatcatcttg agcaagggtt tcctgcttta aaattatccg atactataca
     4261 acattaccac tttcttgagt gctggcttca tctatacttg cttgtttatc atcttcattg
     4321 atatttggat cttcatctgt agtttgcata agcaaagctg tagtaatgtc aggttcttgt
     4381 tgtcctatgg tatcatttgg gttattatta gaaccgttgt tgttaccatt gttaatatca
     4441 cctgaatcgg ttccatcgtt tccgttgttg gagttgttgg atcctgaatt tataatggat
     4501 actggcttat agtttgcact atattttcca ttgactgtaa gatgactagt tccatttatg
     4561 ctcgcacttg ctaaagtttt attagaattt tctaaactag aattagtact cgctgtagcg
     4621 atttgaagag ctattgtagc ttgttataaa tcactagaaa ctttatctac agcttgtttt
     4681 aaacctgcaa taactttatc gccattatta cctgttatac cacttagagc tgtattgtaa
     4741 gctttaactg cttcattata agcatttaca gcagtatcgt aagttttttg agcgttttct
     4801 tgcccttcgg tcattttagg aattttgaga aagaatttcc tttgttttaa taatgacttg
     4861 attagctttt cctagatcac cataagaatt tcccaatact tcctttaaag cgtttgcaaa
     4921 tgttgcatta ttactatctt gagtttgtcc atataaagca gtaataaaat ccatactttg
     4981 attaatgctt gttaattcat cagctgttaa tatttttcca tttttataaa atttacttaa
     5041 gtcgctaata tcaacactag aattaaattt caagtcatta aatatagaat ttaaaacttc
     5101 atttgagatg ttatctttag taataagatc gctagtttct ttatagtttt cacgattttt
     5161 tatcgctcct gttccaacta aagattttgt agcacctgtc atagatggtc catttactgc
     5221 taaagatgta aaaaaatcat tagggctgta aacatacaaa taagccggtt tttctattgt
     5281 gcttgtaaaa aaatatctac catgattatt attagaatca tattccgtaa catattttcc
     5341 caccatagca atcccttctc gtactgtcat agtttctaaa tttataacat ttcctgcatt
     5401 ggatttaatt acaggtgata ttgttttagg atctccttca aatgctgaag gttttccatc
     5461 ttttacaaac tccttcatcc ccttatcctc tattgatgaa gcagacagaa taattttttt
     5521 tgcattaata cttccaccat tgagtgttcc atctataatg agagctttta gaaccatagg
     5581 caatatttaa ataattttgg ttagtttttc cttgtccaaa atttacagtt tcaccacttg
     5641 ctatattaaa accaccaccc cattggataa cagagtttgt tttacttcct gagatattca
     5701 tagtgccacc actaacactt atacttccac ttgttccatg agtgaactta cccccacttg
     5761 gtaaagcata gctttgtgta aaaagaaaga acctacaact aaagataaag aaagtttatt
     5821 taactttttc atgacttgct cctttttgta agattaagat ttaagaatct tttgtttata
     5881 tttataaaaa tacaaataaa tcattcctat ctttaagata ggaatgattt attttatcct
     5941 tgcgtaaatg cttttgccat cttgagatat tcttgcttca taagaaagct tttataaatt
     6001 catatttttt aatctatcta tagaacttag tttaaaatct tctttgtttt tttgcatttt
     6061 ttcaataaag ctttgaagtt cttcttgatt taaagtatta gagttttcat ctataaaacc
     6121 ttgctcactt tgtaagatta agatttcttt atttttaagg taggggtatt actctttgag
     6181 ggtataaaga gccaatactc cctcgctaga aatattaata ggagcatcgt atgacttcaa
     6241 aaaggggagt tgtgttgatt ttattggata caataagata ataatgctca aagttattaa
     6301 taattctagc ttcaacttta gtatttaaaa tcagtctatt gtttttactt aaactgatat
     6361 ctgaaggagc tatagcatta gaagtactat aattatcttc ataatgtact aaggctcctg
     6421 ctaatatatc tatgaaagtg tttttaaata tatttaaatt cccgcctata taaggtatta
     6481 ttataagatt tagcttcact taaacctgta atggccgaag gagctataaa aacagaattg
     6541 ttatttttat actcatcaag attgagattg tttatgatta aggtattatc atggccattg
     6601 tttgaaagtc cagctataat acttaaaatt ccttctcttt tatctgaagc tacaccaaat
     6661 aaagtatcat tgataatgat tttattataa gcagcttcat tataagccat aatcaaataa
     6721 gcattatcag ctgcattaga agaatagttt tttatatcta tggtattatg attggcttta
     6781 tctaaagctc ttatgatgat tttagaacct ttatctatat tacttgcatc agtaatgctt
     6841 tgaacattgt tataatttat agtattataa gaagcttctt tggcttctgt taatacagtt
     6901 agatttctaa aagaagcaaa atctttaatc gatactttat tgttattagc actactagga
     6961 taaaagtctt gattattaag aaggtttttc ttagctgtat aaatgtatac aggtaaggtt
     7021 gacatagaat tattaatata aactttatta taatccgcat tgccttccaa ggttctacca
     7081 gctacaatat ttaaagcatc tttatagctt tgagaaagat cggttgtggt aagatcgttt
     7141 ttaatgttaa tggtattatg attaactcct ttagttgcaa agtcaccata aaaagaatgt
     7201 tggttataac ctaagaagtt attagcgatt tctaaaggat gttttaattc tatgtttaag
     7261 gtattataat ttacttctcc attattataa gctcctgcgt agaagttaaa caaagcttga
     7321 gcaaaaatgt tctcattgtt tttatttttt taggttttta atatctttta atattgatag
     7381 tattatctaa ggcttgtcct tgttcggttt ttccacccaa aaaatcagca aataaaacag
     7441 aattataagc taagggttgt ttatcatggt tcatatacat atcaagatta aaactatcta
     7501 tgtctaaaag gtttttactg gcttgaaagt ttttatctga ttcgctatct atataacctg
     7561 cgctaatatg agcagcagct aaactagcat aagctttact tggaccatgg ataatcatat
     7621 tagcatcttt gataaagatt ttattgtttt ttacattacc ttgataagct aaaccaccta
     7681 caaggtgagt gattctttca tcaaaggtat tattaccatt tttatctttt ttaggcaagg
     7741 aagtaaaaaa ctctacactg ctacctgctt ttatatttaa actattattt gtagaatctc
     7801 cataagtggc tatagctccg attaaataag gagaaccatt taaggctaaa tcataagtgt
     7861 tctcaactcc catactaata tgggcatctt tttgaagtat ggtttggtta tagcttgcat
     7921 tactataatg agtaaaggta gaactcatta agaaattcat gcgttgattg cttttagaat
     7981 tactagggtt tttatatgag tatctttagg tttaagataa aaaactgaac taagttctcc
     8041 ttgttctaat ataagtttgt tataacttgc atcagcatga tcggtttttg ctgtgattac
     8101 actctaactg ttttttatac tacgatcggc tgtattaaca ccatgccttg ctttaaaaga
     8161 aagaacttca tcttctctca tatcaggagt aagtaaataa tgtttaaaat ttaaatcgtt
     8221 tatatttgta atatttggtt tatgattgtt aaatattgtt aatatattgt ttagaactct
     8281 tagcataata atttatacct tggaattttt tataagtaga attggtttta tcataaagtt
     8341 cgttatcatt aaaataatgc tttggaatat tgaaatttcg attgtctgta gtatttgctt
     8401 gagtggctgc aaaagcgttg atgcttaaga aggtaacaat ggaaagttta aaacaaaatt
     8461 tctctatacc ccctcccagt gaagttaaaa agctttatta aattaagatt ggacggaatt
     8521 tttaatataa actaaaaagc gatatcaaag aatttccgtt gtataatcta atgtttttta
     8581 aatgtgaaat attttttaag gtaaagcgat gaaaatgcgt gtgtattatg aagatactga
     8641 tgcgggtgga gtggtgtatc atagtaatta tttaaaattt tgcgagagag taagaagtga
     8701 aatttttttc aataaaaaag tagatatttt tgatgcgtct aagggacatt ttttacttac
     8761 aaaagcaaat tgcaatttct taaaacctgc aaaacttgga gatatgatag agattaaaac
     8821 aaaaatttta gaagtcaaaa atgcttctgt ggaaatttta caagaaattt ataaagatga
     8881 aattttgttt tttaaaatgg aattaacttt agcttttatt aaaaacgaaa aaccagctag
     8941 aatggatatg cagttaaaaa agctctttga agaattattt taattcttca aagcttgctt
     9001 gcttaccttg cataagacgc actttgtaat caacttgaga atttttgatt ttctcatcaa
     9061 ataaattttc gcttttttta tttaggaatt cggtataaaa gtaatcaact cctatgctag
     9121 tagcataagc aatccagtta taatctatac tttgattaaa aatttcatta agatagacta
     9181 agttatcatc gtggttattg atagaattag caatgataaa attttctcta tctccttgtt
     9241 gtgttaaact taaaaatgtt ggattatagt tgatttgagt ggataaaagc acataaggat
     9301 gaatgttata aattcttagt tgagaacttg ctagagctgt tttgatcaat ggagcgttaa
     9361 aaaatattga ggcattatta actccacctt gtgatcttaa aagtctgctg aaatcaagct
     9421 tctcgccttc tatggtatat attctagcat tattattttg agcaagaatt cttgaattta
     9481 gattgcttga taaggcagag ccatcgctaa atattgcgat attagcattt gatttgctta
     9541 aaagtgtggc aatttgagca tcatagtcaa tacttccaaa aataatattt tgatttgaaa
     9601 tttgtatgtt gtttttatgg atagtcggta tgaaaatttt catatttcct gagtaatttt
     9661 tcaactcatt agcacctttt aaggtaaatc cagctatggc atactgatat ccttgagctt
     9721 gtgctgcatc aagcgcggct cgaattttat cactatcttc tgtgccggtt aaaaaaactt
     9781 ttactttgat ttcagctctt tgtcttaaaa gataggctat gcttgaattt attatagtat
     9841 ttgagtagct ttttatggtt ttttctggga taattatcgc aagtttgaca gaagtaattt
     9901 tttgaacatt tttttcaaaa tcagtaatgg aatttaataa ttttgcataa acattagata
     9961 aaaattgatc gttttgatct gcaaattcac ttaaaaaact aagatataat cttgattcta
    10021 aaagatcaaa aagacaattt gtgttgcatt cttgaacgct taatttagga taaaaatttt
    10081 caacgggttt tacatcgact aatttttgct cttttgcatt aagcaaaaag caagataaga
    10141 aaaatatta
//
LOCUS       DAPIWV010000066        10104 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.067, whole genome shotgun sequence.
ACCESSION   DAPIWV010000066 DAPIWV010000000
VERSION     DAPIWV010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10104
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.067"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            61..1485
                     /locus_tag="RJ272_001165"
     CDS             61..1485
                     /locus_tag="RJ272_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7382250.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIVLVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIVIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAVLGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMVAGYL"
     gene            1627..1808
                     /gene="kdpF"
                     /locus_tag="RJ272_001166"
                     /pseudo
     CDS             1627..1808
                     /gene="kdpF"
                     /locus_tag="RJ272_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            1818..3506
                     /gene="kdpA"
                     /locus_tag="RJ272_001167"
                     /pseudo
     CDS             1818..3506
                     /gene="kdpA"
                     /locus_tag="RJ272_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            3516..5573
                     /gene="kdpB"
                     /locus_tag="RJ272_001168"
                     /pseudo
     CDS             3516..5573
                     /gene="kdpB"
                     /locus_tag="RJ272_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            5575..6183
                     /gene="kdpC"
                     /locus_tag="RJ272_001169"
     CDS             5575..6183
                     /gene="kdpC"
                     /locus_tag="RJ272_001169"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HDV7382251.1"
                     /translation="MFRTLLSFFVVMLILCTLVYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDVSKAVGSKLLGQDFNKPYFLHSRTSVSNYNTSDTNESSVSLGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            6186..8114
                     /locus_tag="RJ272_001170"
                     /pseudo
     CDS             6186..8114
                     /locus_tag="RJ272_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(8109..10082)
                     /gene="uvrB"
                     /locus_tag="RJ272_001171"
     CDS             complement(8109..10082)
                     /gene="uvrB"
                     /locus_tag="RJ272_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HDV7382252.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSATSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKHNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPANERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
BASE COUNT         3219 a         1407 c         1825 g         3653 t
ORIGIN      
        1 aatttaaaaa tgtgatacaa taataactgt ttttaaatat taattttcaa aggagttaaa
       61 atggactttt taacaagcct tagtgaggga gggcaatttg caatccaaat cattatcgtt
      121 ttaatttgtc ttttttacgg tgcaaaaaaa ggtggtatag cgcttggttt gcttggtggt
      181 ataggtattt taatgcttgt atttgctttt catataaaac ctggaaaacc agctatagat
      241 gttatgctta caattttagc ggtagtggtt gcaagtgcaa ctttgcaagc aagtggtggt
      301 cttgatgtta tgcttcaaat agcagaaaga attttaagac gcaatcctaa atttttaacg
      361 atattagcgc cttttgtaac ctgctttttg actatacttt gtggaacagg acatgtggtt
      421 tatactatta tgcctattat ttacgatata gcgattaaaa acggtattcg tcccgagcgt
      481 ccaatggcag cagcttctat atcatcacaa atgggtatta ttgcatctcc tgtatctgtg
      541 gctgttgtga gtttgaccgc tttgctttta aatgctaatc ataaattagc gggttttgat
      601 ggttatatca atcttcttca aattactata cctagtacat tgtttggcgt attgtgtgta
      661 ggaatttttt cttggtttag agggaaggat ttggataaag atgaggtatt tcaagaaaaa
      721 cttaaagatc ctgaatttaa aaaatatgtt tatggggatt ctaaaacact tttaggtgtt
      781 aaacttccaa agagcaattg ggttgcaatg tggattttct taggagctat tgttttagtg
      841 gctttactgg gcgtatttga ttttttacgt ccaaattggg gtcaagttgt aaaaaatggc
      901 attcctcaag tagatgcttt aggcaatcct aaaatggacg ttttatctat ggtctcagtc
      961 attcaaatgt tcatgctttt agcaggttct ttgattgtta tctttactaa aacagatgca
     1021 aagaaaattg gctctaatga aatttttaaa tctggcatga tagcacttgt tgcggttttt
     1081 ggaatttctt ggatggctga tactatgttt gcagttcata ctcctatgat gaaagcagtg
     1141 cttggagata tagtaaaaga gcatccttgg acttatgctg taatgcttct tttgatttcg
     1201 aaatttgtaa actctcaagc agcggctatt tcggcttttg ttcctttggc tttaggaatt
     1261 ggtgttgaac ccggtgtgat tgttgctttt gcagctgctt gttatgggta ttatatttta
     1321 ccaacttatc caagcgattt agctactata caatttgaca gatcaggtac tactcatatt
     1381 ggtaaatttg ttattaatca tagttttatt ttaccaggtc ttataggtgt aattacttct
     1441 tgtatagcgg gttattttat cgctatggta gcgggctatc tttaaaaaat tttagcagga
     1501 ttgttcctgc taaattctcc atttatcttt ttgtttaatg taaataaaaa ttataaataa
     1561 atcataaaat tagtattaat caaaatataa gcttaacaag gatagaataa atcctatttt
     1621 gaatcaatga gaaagggcta tcctatggat gttatctttg cttttgcttt tagcttttgg
     1681 tagtttatga ttttttatcc atttttgtga aattcaaact aggacatgcg gatgatgttt
     1741 ttactagttt taagcttaat acttgctctt tatttatttt atgcttatta tatcctgaaa
     1801 aattttaaag gaaaaatatg ctagaaattt taataacact gattatagct tttatattgg
     1861 ctttaatttt tggaaactat ctttataaaa ttgcaagctg taaaaaaact atttttgatt
     1921 ttatttttaa tccaattgat aacttaattt ataaaatttg tgcaattgat agaaaaaata
     1981 tgacttggca aaaattattc tttgcattta attgctttta atgccttagt ggctattttt
     2041 tctttcgtga ttttttattt gcaagataaa ctttttttaa atcccaattc gataaattct
     2101 atgaaagggg atttgaattt aaacactgta attagtttta ctacaaatac aaaccttcag
     2161 cattatagtg gagagagtgc tttaagtttg ctttcccaaa atacaggcat tttacttgct
     2221 atgtttgttt caagtgcaag tggatattct gcttgtatgg ctttttgtcg tgctttatgt
     2281 ggtatgcaaa tgggaatttt atgaagattt tacgcgtatt attacgcgtt tgatgttgcc
     2341 tttaagtttt attttggctg taattttatc tctgaaggcg tggtgtaaaa ttatcacgca
     2401 aattttagcg tgcttacttt agaaaataaa tttcaaagca ttgccacagg tcctgttgca
     2461 gctcttgagt ctataaaaca tttagggaca aataggggtg gtttttttgg tgctaattca
     2521 agcatgcctt ttgaaaatcc tgctttactt acaaattttt tgcaaatttt atccatgatg
     2581 cttattccta gtgcctgtgt tgtagctttt ggattgatgg tttatcatag aaaagaaaga
     2641 caaggttttg ctcttatggg aaaagaaggg gagttatttt tggtgcaatg gggattattt
     2701 ttatcatttc tttgctttta atttatttta gcgaaaaaat gtcaaatcca aatttggatt
     2761 ctttgggttt aaatgcaaat ttgggaaatt tggaaggtaa agaaataaga tttggcacag
     2821 atggttcgag tttatttagt gctgtaacta ctgcttttac tgcaggaagc gttaataata
     2881 tgcacgatag tttaaatcca ttaagtatca gtgctacttt gctaaatatg atgctaaatg
     2941 tagctttcgg tggcgaagga gtagggctta tgaatatgat tatttatgtg ctcttaaccg
     3001 tgtttatttg tgcattaatg ataggtagaa ctccagaatt cttgggtaaa aaaatagaaa
     3061 gcgcacaaat gaagcttata gctttggtaa ttcttatcca tcctttatta atccttgttt
     3121 taagtgcatt agctgttgtt tttgcaaaag atagtataag caatcctagc tttcatgact
     3181 tggctcaaat tttgtatgaa tttagttctt cggcagcaaa taatggttca ggacttgaag
     3241 gtttaaaaga tgataattta ttttggaatt taagcacagc ttttgctatg ttttgtgggc
     3301 gttatttggt tttaatagct cagcttgcta tagctggatc gcttttggct aaaaatacac
     3361 aagaaaatac tgcaaattct ttaaaaacag ataatttaac ttttatgttt gtgcttgttt
     3421 gtattatata tatttttgct gcacttactt tttttccagt gcttacttta tcaagcgttg
     3481 cagaatattt atctttatgg cattaaggag agtcaatgtc taaaaaacaa aataaactca
     3541 ttacaaaaga aattttaaat aatgccataa aaggagcatt tttaaaattt gatccacgct
     3601 ttatggtaaa aaatcctgtt atgtttatgg tggaagttgg atcgattctt actttgattt
     3661 taagtatttt tcctacttta tttaatggaa attctgatga aagaatttat aacatcttaa
     3721 tcacttttat tttatttata atcttgcttt ttgcaaattt tgcagaaagt attgcagaag
     3781 gaaggggtaa agcccaagca gctaccttaa gacaaagcaa aaaggattct aaagctagac
     3841 gcataaaaag tgatggcagt gaagaaatgc ttaattctag cgagttaaaa ataggtgata
     3901 tagttttagt taaagcaggt gaacttatac ctaatgatgg agaaattata gaaggtgctg
     3961 caagtgttga tgaatcagct attacaggtg aaagtgcacc tgttatgcgt gaagcgggtg
     4021 gtgatttttc ttctgttaca ggtgggacta cggttttaac tgatttttta aagattaaaa
     4081 ttttagttgg agctggggaa agttttttag ataaaatgat caatcttgta gaaggtgctg
     4141 cgcgtcaaaa aactccaaat gaaattgctc ttaatactct tttaattgtg cttagtttga
     4201 gttttttggt ggtggttgta agtttatatc cttttatgca atttttaggc gtgagtttgc
     4261 ctatttcatg gttagtagca ttgcttgtat gtcttattcc tacaactata gggggggggc
     4321 ttttatcagc tataggaata gcaggtatgg acagggtaac gcgttttaat gtgatcgcac
     4381 tttcaggcaa ggctgttgaa agttgtggtg atgttgatac tatgatttta gataaaacag
     4441 gaacgattac ttttggaaac cgtttggcaa atgaatttta tgaagttcaa ggtataagta
     4501 aagaagaaat gattaaagct tgtgttttat cctctttaaa agatgaaact ccagaaggta
     4561 aaagcatagt tgcattggct caaaaaatgg gttatgaatt agaaggtaat gatattaaag
     4621 aatttatcga atttagcgct caaaatagaa tgagtggtgt ggatttgcaa gataatataa
     4681 aaattcgcaa aggtgctttt gatgctataa gagcttatat aagcgaaatg aatggaaaaa
     4741 ttcctagcga tttagaaacg aaggtaatgg aaatttcaaa tcttggtggt actcctttgg
     4801 tagtgtgtaa aaatgaaaaa attttaagag tgatttatct aaaggataca gtaaaacaca
     4861 gtaaaaccag gacttaaaga gcgctttgat gagcttagaa aaatgggcat aaaaacttta
     4921 atgtgtaccg gagataatcc tttaacagca gctactatag ccaaagaagc agggcttgat
     4981 ggatttatag cagaatgcaa gcctgaagat aaaatagaag ctattaaaaa agaacaagcc
     5041 caaggtaaga tagtagccat gacaggagat ggaaccaatg atgctccagc tcttgcacaa
     5101 gctgatgtag gtatagctat gaactcagga actcaagcag ccaaagaagc agccaatatg
     5161 atagatcttg attctaatcc tactaaaatt ttagaagtag ttgaaatagg aaaaggtttg
     5221 cttattacta gaggcagtct tacaactttt agtatggcaa atgatattgc taagtatttt
     5281 gctattttac ctgctatgtt tagtgtgttt acctcaaatg caaattttaa atattatgca
     5341 tttagctacc ccgcaaagcg ctattttatc agtacttatt tttaatgcta ttattatacc
     5401 tttgctcata cctattgcta tgcgtggagt taaatttaag cctatgaaaa gcgagcattt
     5461 gcttttaaga aatttaagta tttatggttt gggtggtatg atcgcacctt ttatagggat
     5521 aaaaaataat tgatattcct atagcttgga tacttagaat tttaggagtg tgatatgttt
     5581 agaactttgc ttagtttttt tgtggtaatg ctaatattgt gtactcttgt ttatcctttt
     5641 gctttaaata cagttgcaaa atttattttt ccttatcaat caagtggaag tttagtagat
     5701 aaagaaggtc gtccgacttt ggatgtaagc aaagcggtag gttcaaagct tttgggtcaa
     5761 gattttaata aaccttattt tctacattca agaacatctg tgtcaaatta caatacaagc
     5821 gatacaaatg aaagcagtgt aagtttaggt ggatttaatt atgctatgtc aaatcctgct
     5881 ttaaaagagc gtgtgcaaaa agatttgcaa aaatttttag atgaaaatcc gcaaattaca
     5941 aaagaacaaa ttcctttgga tttattaagt gcttcaggat caggtcttga tcctcatatc
     6001 agtcttcaag cagccctagt gcaaattcct aggataagtc aatcttcaaa aatcaccaaa
     6061 gaagaactag aaaaaatcat tcaagaaaat accgagtcta aatttttagg gatttttggg
     6121 gaagaaaagg ttaatgtttt agctgttaat atagctattg ctaaagccat gaaaaaagaa
     6181 taaacatgca aagacaaagt cctgaacaaa ttctaaaaaa cttgaggtta aagctaagga
     6241 agaagaaaaa aacaaacttg caaaattaaa aattttctta ggttatgctg caggttctgg
     6301 aaaaacttat gctatgttaa gtgaagctag aactttaagg gataatggag ttgatgttgt
     6361 tttaggctat atagagcctc acgatagacc tgaaacaatg gctttaacac aaggttttga
     6421 aagtatagct aatcttgaaa ttccttataa aaatatagta ttaaaagaat ttgatttaga
     6481 cgctaccctt aagagaaagc ctgctttggt tttagtagat gagcttgcac acactaatgc
     6541 taaaggcttg cgtaatgaaa agcgttttca agatatagaa gaacttctaa aagcagggat
     6601 tgatgtttat actactttaa atatacaaca tttagaaagc ttaaatgatt tagtcgctaa
     6661 tatcagtaag atagaagtta aagagcgtat tcctgatcgt atttttgatg aggctgatca
     6721 ggtttgaact tgttgatatt gaacctaata agcttttaaa aagaatgcaa gatggtaaaa
     6781 tttataagga aaaacaagct aaactagcac ttgaaaattt ctttcgccaa gaaagactta
     6841 tagctttgcg tgagattgcc ttaagaagac ttgcttcaag agtgaattta agagcaagtg
     6901 aacaaaggct tattaatgat gatttagctt atcatactgg agagcatatt ttagtttgta
     6961 ttaatgcttc aaatgcaaag gttattcgtg cagctgcaag acttgcttta gcttttcatg
     7021 ctaaattgag tgcgctttat ataaaaaatc ccaatattaa agaagcaaaa gccttagaag
     7081 aaaatataga actagctaaa agttttgatg ctgaaatcat tagcgtatat gatgatatag
     7141 caagacaaat tgcagagtat tcaagcctta gcaatgtctc taaaattgtt ttaggcaaaa
     7201 ataaagataa aaaaaaagtt taaagaagag atttttgaag ctgtcgctaa aaaagcaccc
     7261 aatattgatt tatatcttgt caatgaaaat caaatttcta ctcctaaaat acgaagtaaa
     7321 aaaggttttg attttttagg ttttttaaaa atcacaggag ttttgctttt agcaactttt
     7381 atagcttttg tatttcataa atttaatact cagccaagta atatagttat gatttttatt
     7441 ttagcagttt ttgcttcttc ttttatttct gacaataaaa ttttcgcctt ttattcttct
     7501 ttggtaagtg ttttgattta taattttttc tttttagaac ctatttttag tcttaaagtt
     7561 catgatagtg gaaatattat tacttttaca actatgttta tagttggatt tttaacagct
     7621 gtttttacta gaagattaaa attgcaatct aaagaactca ctaaaagagc ttatagaaca
     7681 gctattttac ttgaaaatag tgaaaattta gcaagagtga aaagcaaaca agagctttgg
     7741 gaacaacttg gaaatcaagc tttaaaatta ttaaatttgc ctattattat ttatcctata
     7801 aataaaaaca atattttatc gaaacctttg ctttttttta acgatgataa gcaaatgtta
     7861 aaaaattgtt ttagtgccga tgagattgct attgctcaat gggttgcaac aaataaagaa
     7921 agagcaggtg tttgtacgaa taccctgcct aatgctaatg ctatgtattt acctatagaa
     7981 gatgggaaaa aactaaaggg gttataggta tagttttaaa agaaaaacgt cccttgcaag
     8041 actttcagta tgaaatttta agtgctttac ttaatgaggc aggagttaga acaagggata
     8101 tatttttatt ataaatccct taatttatta atctcatctc taattgcagc agctttttca
     8161 aactcaagtg ctttagctgc ttcaagcatt tgttttctta actctttgac aagttttgct
     8221 ctttcgttag caggcatttt ttctagtttt ttacctttgc gataaatttc gcccaaatcc
     8281 tcttcatttt tcaagctctc ttcaatatgg cgtttaactg aagtcggcgt gatattgtgt
     8341 tttttattat aagccatttg aagtttgcgg cgttcattgg tggtatccat agcttcttgc
     8401 atggattttg tgattttttt gcaaaaaagc aaaaccttac cattgacatt tctagctgct
     8461 cttcccatgg tttggattaa acttgtagca cttcttaaaa agccttcctt atctgcatcc
     8521 ataatggcaa tgagtgaaac ttcaggtagg tctagtcctt ctctaagtaa gttaatgcca
     8581 attagcatat caaaagcacc gcttcttaaa cctcttataa tttcattgcg ttctatagca
     8641 tcgatatctg agtgcatgta tttgactttt ataccaagct ctaaataata ccttgtaagc
     8701 tcttcggcaa gttttttagt cagtacagtt actaaaactc gctcgtttct ttgtatgact
     8761 tttttagcct catcaaataa aatttcaacc tgattatcac tatcttttaa ctctattaaa
     8821 ggatcaagca gtcctgtagg acgcatgatt tgatgaaaga tgttttcttt gctaagttca
     8881 agttctaaag gtgcaggtgt ggctgaaaca aaaagaaatt gacaattttt atggataaat
     8941 tcatcaaaca ttaaaggacg attatccaag gctgaaggta aacgaaaacc ataatctacc
     9001 aaagtttgtt ttctgcttct atctcctgca aacatacctc taaattgtgg taaagataca
     9061 tggctttcat cgactataac aagaaatttc ctatttttaa tcgcaaaata atcaaaaagc
     9121 gtataaggag tatcaccttc tttaagccct gttaaatgtc ttgcataatt ttcaacgcct
     9181 ttacacattc ctgtgcttgt aagcatttca agatcaaatt caaccctttg tttaaggcgt
     9241 tgatattcta cgagtttatt ttcatgttca aaataagcaa ggcgttcgtt aagttctgct
     9301 tttatgtctt ttatcgcttg ttttagtctt gtttcaccta cactaaactg gcttgtagga
     9361 tagagtatga agcgttttaa atctttacct tttttatttt ctaaaacatt gtaatgatac
     9421 atagcatcaa gctcatcgcc aaaaaattca agtcttacta cttcatcttc ataataagct
     9481 ggataaatat ctataatatc tccttgaact ctaaaatctg cacgatcaaa aaaattatca
     9541 tttcttttat aacccatatc tacaagtttt tttaaaagtt ctttttgtga aatttgcata
     9601 cctagttcaa agattaaaac catgcctatg tattcatttg gattaccaag tccataattt
     9661 gccgaaacac tagctatgca aactacatct tcataactta aaagagaagc agtggcactc
     9721 agtcttaaac gctctaagtc ttcattagtg gagctgtctt tttctatgaa aacatcagtg
     9781 cgtggaatat aggcttcagg ttgataataa tcataataag atataaaata ttccacatga
     9841 tttttagaaa aaaagccttt aaattcgcta taaagttgtg cacaaaggct tttgttgtga
     9901 ctcatgataa gagtgggcat attaagttct ttaatgacat ttgccatggt aaaggttttt
     9961 ccacttcctg taacgcctag taaggtttga tatttgttgc ctttttttat actttttact
    10021 atacctttta tggcttcttg ttgatcagga ctaggtttaa attcgctggt aagttctaac
    10081 atttttctac tttattttta tttt
//
LOCUS       DAPIWV010000067         9475 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.068, whole genome shotgun sequence.
ACCESSION   DAPIWV010000067 DAPIWV010000000
VERSION     DAPIWV010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9475
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.068"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            236..1396
                     /gene="pglE"
                     /locus_tag="RJ272_001172"
     CDS             236..1396
                     /gene="pglE"
                     /locus_tag="RJ272_001172"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HDV7382253.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKNDVYEISKLILKSIKA"
     gene            1398..3170
                     /gene="pglF"
                     /locus_tag="RJ272_001173"
     CDS             1398..3170
                     /gene="pglF"
                     /locus_tag="RJ272_001173"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HDV7382254.1"
                     /translation="MIFYKSKRLAFFLISDIVLILLSVYLAFSLRFSGDIPSIFYYGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSKMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFVVEEKERIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            3170..4063
                     /locus_tag="RJ272_001174"
     CDS             3170..4063
                     /locus_tag="RJ272_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HDV7382255.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            4176..4568
                     /locus_tag="RJ272_001175"
     CDS             4176..4568
                     /locus_tag="RJ272_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HDV7382256.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            4591..5436
                     /locus_tag="RJ272_001176"
     CDS             4591..5436
                     /locus_tag="RJ272_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDV7382257.1"
                     /translation="MQKKYYELFFIVEEQYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            5440..7377
                     /gene="ftsH"
                     /locus_tag="RJ272_001177"
     CDS             5440..7377
                     /gene="ftsH"
                     /locus_tag="RJ272_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDV7382258.1"
                     /translation="MNNNTPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NGLPTRLQELEEVKTEVKVEE"
     gene            7374..7991
                     /locus_tag="RJ272_001178"
     CDS             7374..7991
                     /locus_tag="RJ272_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7382259.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            8001..8729
                     /gene="pssA"
                     /locus_tag="RJ272_001179"
     CDS             8001..8729
                     /gene="pssA"
                     /locus_tag="RJ272_001179"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDV7382260.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(8720..>9475)
                     /locus_tag="RJ272_001180"
     CDS             complement(8720..>9475)
                     /locus_tag="RJ272_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HDV7382261.1"
                     /translation="EKNITIKFHSFQNFYEDFKSHKLIFNHEHQSIFKKNTSQQITLL
                     HPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVAD
                     EEIKHFKLLNSALKELSYKYGNFPVHDNLESALEATKDSLSFRMGVVHRGLEAKGLDA
                     NPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFIELCKTF
                     KQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         3246 a         1086 c         1820 g         3323 t
ORIGIN      
        1 aaaaaatgaa atttttaaat caagttgaag tttgttttgt tatcaaaaca aaaaataaaa
       61 tactccttaa atgctttgaa agtatttata aaaaagaaga cttagaaaag cttaaaaatt
      121 ggtatgaaaa caagctttga ctataaaaag aatttaaata tttgaatctt tgtaaatttt
      181 tttaggtaaa atagagtcaa tttataaaaa ttttgtttta cacaaaggat aaatcatgag
      241 attttttctt tctcctccgc atatgggtgg taatgaatta aaatacatag aagaagtttt
      301 caaaagcaat tatatagcac ctttgggtga atttgtaaat cgctttgaac aaagtgtcaa
      361 ggcttacagt aaaagtgaaa atgccttagc tttaaattca gccacagcgg ctttgcattt
      421 agctttaagg gtggcagggg taaaacaaga tgatattgtt ttggcttctt cttttacttt
      481 tatcgcttca gtagcaccta tttgttatct taaagcaaaa cctgtattta tagattgtga
      541 tgaaacttat aatatcgatg tagatttatt aaagcttgct attaaagaat gtgaaaaaaa
      601 accaaaagca ttgattttaa ctcatcttta tggcaatgcg gctaaaatgg atgaaattgt
      661 tgaaatttgc aaagaaaatg aaattgtttt aatcgaagat gctgctgaag ctttaggaag
      721 tttttataag aataaagctt taggaacttt tggagaattt ggagcttatt cttataatgg
      781 caataaaatt atcaccactt caggtggagg tatgcttata ggaaaaaata aagaaaagat
      841 tgaaaaagca agattttata gcactcaagc tagggaaaat tgtttgcatt atgaacattt
      901 agattatggt tataattacc gcttaagcaa tgttttagga gctattggcg tagcgcaaat
      961 ggaggtttta gaacaaagag tgcttaaaaa aagagaaatt tatgagtggt ataaagaatt
     1021 tttaggagag tgttttagct ttttagatga attagaaaat tcaagaagca atcgctggtt
     1081 aagtacagct ttgattgatt ttgataaaaa tgaacttaat tcttgtcaaa aagatataaa
     1141 tatcagtcaa aaaaatatta ctttgcatcc aaaaatttca aaactcatag aagatttgaa
     1201 aaatgaacaa atagaaacaa gaccattatg gaaagctatg cacgctcaag aagtatttaa
     1261 aggagctaag gcttatctta atggcaatag tgagttattt ttccaaaaag gaatttgttt
     1321 gccaagtggt acggcgatga gtaaaaatga tgtttatgaa atttcaaaac tgatcttaaa
     1381 gagcataaag gcttaaaatg attttttata aaagcaaaag attagcattt tttttaattt
     1441 cagatattgt tttaatttta cttagcgttt atctggcttt ttctttgaga tttagtggag
     1501 atattccgag cattttttat tatggtatga tggtttctgc tattattttg cttgttttaa
     1561 aactttcatt tttatttgtt tttagaattt acaaagtagc ttggagattt ttttctctca
     1621 atgaagcaag aaaaattttt attgctttgc ttttagctga gttttgtttt tttcttattt
     1681 tttatttttt tagtgatttt tttaatcctt ttccaagaag tgctattgtg atagattttg
     1741 ttctttctta tatgtttata ggtactttaa gaattagcaa aagaatgctt gtggatttta
     1801 aaccttctaa aatgaaagaa gaagaaactc cttgtattgt agtaggggca acttctaagg
     1861 ctttgcattt gttaaaaggt gcaaaagaag gttctttagg gctttttcct gtgggtgtag
     1921 ttgatgcgag aaaagagctt atagggactt attgtgataa atttgttgta gaagaaaaag
     1981 aaagaataaa atcttatgta gaacaagggg taaaaactgc cattattgct ttaagacttg
     2041 aacaagaaga gcttaaaaaa ctttttgaag aacttgtagc ttatggtatt tgtgatgtaa
     2101 aaatattttc ttttacaaga aacgaagcaa gagatatcag tatagaagac ttgcttgcta
     2161 gaaaaccaaa agatttagat gatagtgctg tggcggcttt tttaaaagac aaggtagttt
     2221 tggtaagtgg agcaggtgga actataggca gtgaactttg taagcaatgt attaaatttg
     2281 gtgctaagca tcttattatg gttgatcata gtgagtataa tctttataag atcaatgatg
     2341 atttaaattt atataaagaa aaaattactc ctattttact gagtatttta gataagcaaa
     2401 gtttagatga ggtattaaaa acttataaac ctgagcttat tttacatgca gccgcttata
     2461 aacatgtgcc tctttgcgaa caaaatccac attcagcagt aatcaataat attttaggaa
     2521 ctaaaatttt atgcgacagt gctaaagaaa ataaagtagc taaatttgtg atgataagta
     2581 cagataaagc agtgcgacca acaaatatta tgggttgcac taaaagagtt tgtgagcttt
     2641 atactttaag tatgagtgat gaaaattttg aagttgcttg tgtgcgtttt ggtaatgttt
     2701 taggttctag tggtagtgtg ataccgaaat ttaaagcaca aattgccaat aatgagcctt
     2761 taactttgac gcaccctgat atagtgcgtt attttatgct tgtggctgag gcagtgcaac
     2821 ttgttttaca agctggagct atcgcaaaag ggggagaact ttttgttttg gatatgggta
     2881 agcctgtgaa aatcatagat ttagctaaaa aaatgctttt actttctaat cgcaatgatt
     2941 tagaaattaa aatcacaggc ttaagaaaag gtgagaagct ttatgaagag cttttgattg
     3001 atgaaaatga tgctaaaacg caatatgaga gtatttttgt agcaaagaat gagaaggttg
     3061 atcttgattg gcttaataaa gagatagaaa atttacaaat atgtgaagat atttcagagg
     3121 ctttattaaa gattgtacct gaatttaaac acaataaaga aggtgtataa tgtatataaa
     3181 agatatacaa agatttgaag ataatcgcta tcgtgctaga gcttatatga gttatatttt
     3241 aacaagaaat ctgcctaata aacttcctga tattcacctt gaaacgatta aaacagcttt
     3301 ggataaaata gctcatgaag ttgttgtttt tgatgctttg tatattttag atatttcagg
     3361 tatgcaaata gaaaatgcga tttccttaaa taaagctcat gaaatagggc agggtgagga
     3421 tagaagtact cgttcttatt tttatagagc tgtaaaatta agacgatgtg ttttgagcga
     3481 tccttatcct tcggttttaa ataatgagct ttgcgtgaca gcttctatgc caatttacga
     3541 tgataaaaat aacttgcttt ttgttgtttg tattgatatc aagcttgaag atattttaaa
     3601 gattattcaa gcaggaaaat ttgaatttgt ttttactcag tttagtcgtt tggtatattt
     3661 ttgcttcgca ctggttttat ttgtgattac ttgtttttta tttcaaaaag gtttttttag
     3721 tctttttgat aatcaagcta taggtataga acatatgttt gaaagtacca tcgctataac
     3781 tttggcttta gctatttttg atttggcaaa aactttgatc gaacaagaag tattaggaag
     3841 gacgaaaaaa gaagaaggtg gaattcaaaa aactatggtg agatttttgg gttctattat
     3901 cattgcttta gctatagaag ctttgatgtt ggtatttaaa cttgctattg gtgatctttc
     3961 tcagatgatt tatgcgattt atcttatcgg tggagtgagc ttgcttcttt taggtttaag
     4021 tgtatattta tttacggtta agtataaaaa taataatatt tgagtaaaaa tttaagtaaa
     4081 agatgatata atgctgtttt ttaaaatttt ttagcttgat taataaggct aaaaagggta
     4141 aaataaaact ataaaaactt tgaaaggacg aaattgtgaa attgttagtt gttgatgaca
     4201 gttctactat gagaaggatt attaaaaata ccctaacaag acttggacac gatgatgttt
     4261 tagaagctga gcatggcgtt gaagcttggg atttattaac taaaaatgaa gatgtaaaag
     4321 ttttaattac agattggaat atgccagaaa tgaatggctt ggagttggta aaaaaagtaa
     4381 gagcagagaa aaaatatgaa gatatgccta tcatcatggt tacaactgag ggcggaaaag
     4441 ctgaagtgat tactgcttta aaagctggcg taaataacta tattgtaaaa ccttttactc
     4501 cacaagtttt aaaggaaaaa cttgaagatg ttttaggaac aggaagtgga gaaggtgcag
     4561 ctgagtaaag gctgattttt aaaattctaa atgcaaaaaa aatattatga attgttcttt
     4621 atcgtagaag agcagtataa aaatttattt cttgattttg cttttgattt aggtatagaa
     4681 gccatagaag agaaagataa tggtgtttac attagatccc atgagagttt agaagagttt
     4741 tcatgggcac ttgaaatatt tgctcaaaaa cttacaacta ctttcaattt aaatcataaa
     4801 attatttcta atttaagtct tgtagagaaa gaaaacaagg actggataca agaatataaa
     4861 aaaggcataa aacctatctt agtggataat gtttacatcc atacaacttg gcaagaagaa
     4921 aagaagaatt gtataaatat aaagattaat ccagccttag cctttggctc aggacatcac
     4981 gaaagcacat attcttgtgt aaaattttta caaaaatttt ctaaaagtaa attaagagct
     5041 ttagatcttg gttgtggtag tggaattttg ggtattatta tggcaaagtt tggctgtaat
     5101 gttgaaattt gtgatactga tgagttggct attgatagtt ctttagaaaa tgcaagatta
     5161 aatggtgtcg attttcacaa ggcttggtgt ggatctatag ataaagcaaa tggtttatat
     5221 aatctaattg ttgcaaatat cattgcagat gtgattttaa ttttagaaaa agatattaaa
     5281 aaccatttag aagacaatgc tatacttatt ttgtcaggaa ttttagataa atattcaaca
     5341 agaattaaag aaaaatttca agatttggaa ctcattgatg aaatgcaaat caatgagtgg
     5401 tgtagttttg tatataaaaa taataaaaaa ggataagtaa tgaataataa taccccaaat
     5461 aataagggta atccgcaggg taataatttt tttaacaaaa atcccatttt tatttttgcg
     5521 atttttgcaa ttgtaatgat aattattttt aagggatttt ttgatggcaa tggttctttt
     5581 ggcggggcat tgaatggcaa tgaagtaaat aaaaatgtcc cttattctga gttaaaaaag
     5641 cttattgaaa gtggacaaat caatcaagtt agtataggac aaacaacaat caaagcgatt
     5701 tcaagctctc acaatactgt ttatacagca aaaaaagtta atgatcctga gcttgtgagt
     5761 ttactagata gtaaaaatat cgcttatggt gcgtattctg aaacaaattg gtttacggat
     5821 atactttttt catgggtttt gccagtattt attttctttg gtatttggat gtttttggca
     5881 agtcgtatgc aaaaaaatat gggaagttct atattgggta taggaagttc taagaagctt
     5941 gtaaattcag aaaaacctaa agtaaaattt agcgatgtag ctggtgttga agaagctaaa
     6001 gaagaagtaa aagaaattgt agatttttta aagtatcctg aaagatatat taaattggga
     6061 gctaaaattc caaaagggct tttacttgtt gggcctccag gtacaggaaa aactttgctt
     6121 gcaaaagcag ttgcaggtga agctgatgtg ccgtttttta gtgtttcagg ttcatctttt
     6181 atagaaatgt ttgtgggtgt aggtgcttct cgtgtgagag atttgtttga aaatgcaaaa
     6241 aaagaagctc ctgctattgt ttttatagat gaaatagatg ctattggtaa aagtcgtgca
     6301 gcaagtggca tgatgggtgg aaacgatgaa agagagcaaa ctttaaatca gcttttggct
     6361 gaaatggatg gctttgggac agaaagttcc ccagtcattg ttttagcagc aacaaatcgc
     6421 ccagaagttt tagatgcagc gcttttaaga ccaggaaggt ttgatagaca agttttagtt
     6481 gataaacctg attttaaagg taggtgtgat attttaaaag tacacatgaa agatgtcaaa
     6541 atatccccaa aagttaaagt agaagatata gcacgtttaa ccgcaggact tgcaggagct
     6601 gatcttgcaa atattattaa tgaagcagca cttttagcgg gtagggattc taaaaaatat
     6661 gtagaacaaa atgatttagt tgaagctgtt gaaagagcta tagcaggact tgagaagaaa
     6721 tcacgtcgta ttaatgaaaa agaaaagaaa attgttactt atcatgaatg tggtcatgcc
     6781 ttgattgctg aaactaccaa aggtgcaaag cgtgtaagta aagtttctgt gattccacgt
     6841 ggtcttgcgg ctttaggata cacattaaac acccctgaag aaaataaatt tttaatgcaa
     6901 aaacatgaac ttatcgctga agtagatgta cttttgggtg gtcgtgcggc tgaagaagta
     6961 tttataggtg aaatttcaac gggtgcaagt aatgatttag aaagagcaac cgatatcata
     7021 aaagctatga tttctatgta tggtatgagt gaaattgcag gacttatggt gcttgaaaaa
     7081 caaagaaata ctttcttaag tggtgggcaa actataaaag actattctga aaagatggca
     7141 gaatctttag atgattatgt aaagaaaacc ttagatgaac gctataaaga tgttaaagat
     7201 actttaaata cttataaggg agcgattgag actatggttg cagcccttta tgaagaagaa
     7261 actattgaag gtaataaagt gcgtgagatt attaaagagt ttgaggatca aaatggttta
     7321 ccaactcgtt tacaagaact cgaagaagtt aaaactgaag ttaaagtaga agaatgaaag
     7381 attttattgc aaaagatgga tatttaagtc ttattatttt aagcttaatt tttatttttg
     7441 tgtggatttt ttattctttt tccatcttgc tattagcatt aattgtaatt tgtatttttc
     7501 tttttagagc gcccaaaaga gaacttgttt gtagtgatga aaaagctatt tttgcaccta
     7561 tggatggtag ggttactaaa atagaaaata ttcatcataa agatttgggt gaatgtgttg
     7621 aaattactat taaaaatgct ctttatgatg ctgggaattt taatacacct tttgcaatgt
     7681 ctataataga tattcgttta cgacatgggc tttttttgtg cagtgaatta aaatctgcaa
     7741 aaatgatgaa tgaaagagct tttattttgg caaaagttaa agagaataaa acgatagcct
     7801 tgcgaatcta tgcaggttct tttgatagaa aattaaagct tgataatatt tctcatgatt
     7861 taaaagcagg agatagaatg ggttttttaa ttaatggctc tataagttta cttttaccaa
     7921 aagatactag aattcatata ggcttaaatg atgaaattaa agcaggttca ttgctaggct
     7981 attttgcgta aggaaaaata atgaataaca gaccgcaact aatttatatt ttacccaatc
     8041 tttttacagc tgcttcagct tttttagggg ttatttctat tatagcttca atacatggaa
     8101 attattatac agctttgatt tatattattt tatctttgat ttgcgatggg cttgatggcc
     8161 gtgttgcaag acttacaaat tctacttcaa aatttggagt agaatttgat tctttggctg
     8221 atctagtagc ttttggagtt gctccagcgg ttctttttta tatggcgata ggttatgatt
     8281 ttggaaaact tggatctttg attacagctt tttttgtggt ttttggagct attcgtttgg
     8341 cgagatttaa tgttaccaca ggcacttatg aaccctccgt ttttataggt cttcctatac
     8401 ctactgcagc agttgtgagt gctatatgga cttatgcgtt tatcagttat gattttttaa
     8461 agccttatgg cgtagttttt ttggtgcttc aagcaatttt agggctttta atggtaagta
     8521 atatacgtta tcctagtttt aaaaagcttg attttaatcg ttctagtgtt ttaaaagttt
     8581 tgattatttt aattataata ttttcatttt tatatcttta ccctcttgaa agtttagtaa
     8641 ttttagcaag cttgtatgtg ctttatggaa ttattcgggt tttatatacc attatcgttt
     8701 caaaatttaa gataagaaat caagagtaaa atttttcaat gacttcgcat tcttcttgag
     8761 tgaagccagc tttgattctt gcttgaatgt taagtttttt tcccgcaaga gagaattgtt
     8821 taaatgtttt gcaaagctca ataaaatcat acctgttttg atttgcaaat ttccaccaag
     8881 tatctccttt tttaacgtgt tttatttcat cattaagtat aatttcaaga tattccatta
     8941 gaagattttt aatggaatga ttggaacttt gaagtttttg aacaacaaag gggttggcat
     9001 caagcccttt agcttctaaa cctctatgaa ctactcccat tctaaagctt aaagagtctt
     9061 ttgtagcttc tagagcagat tctaaattat catgcactgg aaaatttcca tatttgtaac
     9121 taagttcttt aagtgctgaa tttaaaagtt tgaaatgttt aatttcctca tctgctacct
     9181 ccagccaatc gtaataaaat tgcaaaggta gatttttaaa gcgataactc gcatctaaag
     9241 ccaggttaat tgcattaaat tctatatgag cgactgaatg aattatttta gcaagcgcat
     9301 gagttgaatt gacaaattta ggccttctta tacgcgtagg atgaagcaag gtaatttgtt
     9361 gtgatgtatt ttttttgaaa atgctttgat gctcgtgatt aaaaatcaat ttgtggcttt
     9421 taaagtcttc ataaaaattt tgaaaagagt gaaattttat agttatattt ttttc
//
LOCUS       DAPIWV010000068         9392 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.069, whole genome shotgun sequence.
ACCESSION   DAPIWV010000068 DAPIWV010000000
VERSION     DAPIWV010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9392
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.069"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1153)
                     /locus_tag="RJ272_001181"
     CDS             complement(<1..1153)
                     /locus_tag="RJ272_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382262.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQKGNENSLEQ
                     LSYIFNNITYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKILNSYM"
     gene            1312..1503
                     /gene="rpmI"
                     /locus_tag="RJ272_001182"
     CDS             1312..1503
                     /gene="rpmI"
                     /locus_tag="RJ272_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDV7382263.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1597..1950
                     /gene="rplT"
                     /locus_tag="RJ272_001183"
     CDS             1597..1950
                     /gene="rplT"
                     /locus_tag="RJ272_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDV7382264.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(2151..2606)
                     /locus_tag="RJ272_001184"
     CDS             complement(2151..2606)
                     /locus_tag="RJ272_001184"
                     /inference="COORDINATES: protein motif:HMM:NF021926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
                     /protein_id="HDV7382265.1"
                     /translation="MNAVEVLCNYFNCTFEELKNKMQEYTFALKIGEDYLISPMKINP
                     NKTLFSYCDIESAQELSLLKKTNFIEAIKKDYEKFSLNKPKPLGAIFNDCILRRLHNK
                     EHLNQIHFNNFPIVGFSSFGEIYGAGIAKSLVAIFFMKLKILMISNLDI"
     gene            complement(2519..3084)
                     /locus_tag="RJ272_001185"
                     /pseudo
     CDS             complement(2519..3084)
                     /locus_tag="RJ272_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            3567..4424
                     /gene="cheP"
                     /locus_tag="RJ272_001186"
     CDS             3567..4424
                     /gene="cheP"
                     /locus_tag="RJ272_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HDV7382266.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMMAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIVNWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            4452..4931
                     /gene="cheQ"
                     /locus_tag="RJ272_001187"
     CDS             4452..4931
                     /gene="cheQ"
                     /locus_tag="RJ272_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HDV7382267.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(4900..6210)
                     /locus_tag="RJ272_001188"
     CDS             complement(4900..6210)
                     /locus_tag="RJ272_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382268.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVFLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKISIIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(6194..6370)
                     /locus_tag="RJ272_001189"
     CDS             complement(6194..6370)
                     /locus_tag="RJ272_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HDV7382269.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMEIKNEQNP"
     gene            6463..6936
                     /gene="moaC"
                     /locus_tag="RJ272_001190"
     CDS             6463..6936
                     /gene="moaC"
                     /locus_tag="RJ272_001190"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDV7382270.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRIMDIVLESKEGGKSGKFVRS"
     gene            6914..7177
                     /locus_tag="RJ272_001191"
     CDS             6914..7177
                     /locus_tag="RJ272_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HDV7382271.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            7167..8327
                     /locus_tag="RJ272_001192"
     CDS             7167..8327
                     /locus_tag="RJ272_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382272.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYGYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(8346..9104)
                     /gene="xth"
                     /locus_tag="RJ272_001193"
     CDS             complement(8346..9104)
                     /gene="xth"
                     /locus_tag="RJ272_001193"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDV7382273.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            9222..>9392
                     /locus_tag="RJ272_001194"
     CDS             9222..>9392
                     /locus_tag="RJ272_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HDV7382274.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALVHVICSLL"
BASE COUNT         3381 a         1247 c         1352 g         3412 t
ORIGIN      
        1 acatataaga gtttaaaatt ttatttatat ttgcttgttt ttgacgacga tctaaaaaat
       61 tttctataga gctagaacgt agttgatttg cttcttctaa tctttgcgta tcttgacttt
      121 ggttttgata ttgtttttta agagcatcaa aatcattgcg attttgatcg atataaattt
      181 gaaatattga acttgaattt gcaaattctc ttaaatccat atctttttgg tagttaatat
      241 attgttgaaa aaatacagat agtttatctt gagtacttgt ttttttatct acgccattca
      301 cataaagata aagatcaaaa ctcatctttt tttcattttc ttttttgatg taatcttcta
      361 tatctgtttc gcccttgaga attttttgta aattttgatg agagcttagt tctaaagtgg
      421 caggtttcat aaaaaagtta aattcttttt cgttttgagt ttttatatca tggtagataa
      481 aattcattaa aagaccagat tttgatactt ctgcattttt agttaaataa ggttttaaaa
      541 tttcattaga agaagtgttt tctatggctt tatcaaagtg aaaattagtt attttattat
      601 ctaacattaa agtatttaaa tttgtgatat tacttaatgc caaatcaatt tcttcttgat
      661 tgttgtaaat tcttgaaatt tggcctaaaa attctccatt atctgttgaa aaacctgatg
      721 atagttttga aataagatcg cgacttaaat aagcattatc atcttgtaaa aattctgaat
      781 ttatagattt taatgaacta tgatagctat ttaaaagata aggtagatca attttattgt
      841 agtttaaatt ttcatcttgt tttgcgagtt ctttcgctat gcttctaacg cttttaatgt
      901 tgatatcata agattctggt atatttgcaa ttttatttaa atctttatca aaaaaacctt
      961 cttcattgat tctaaatcca aattcactag cataagtgat attattaaaa atataactta
     1021 attgttctaa gctattttca tttccttttt gatctaaggc tttgctatct ttaatcaaat
     1081 ttagagcaga gctattctgc aaaggattag ataaggttaa attttgatat ggatttgccg
     1141 aatttatagt cattttaaat ctttccaaaa tattgctgat ttttttataa gcaaaatgcg
     1201 tgccaagttt tttaaaaatt aaattcagtc aaaaattaga aaaaatttga tagtatttat
     1261 cttttctttt aaagtttgaa aaataaaaat ttatctaaat aaggaaagcg tatgccaaag
     1321 atgaaaagcg ttaaaagcgc agttaaacgc ttcaaagtag gtaaaaataa aatcaaaaga
     1381 ggctcagctt ttagaagtca tattttgact aaaaaacctg caaaaagaat gcgtgatctt
     1441 cgcacagcta aatatgtgca tagcacaaat gtaaaagctg ttgaaaaaat gctaggaatt
     1501 taagtttttg actaaaagtc attcaaactc ccctctgaga taaaatttca agggcaagct
     1561 ccaaatttgg acgccacttt atgaaaggaa ataaaaatgg caagagtaaa aacaggtgtt
     1621 gttagacgcc gcagacataa aaaagtttta aaattagcgc gtggttttta tagtggacga
     1681 cgcaaacatt ttagaaaagc aaaagaacaa ctagaaagaa gtctagtcta tgcttatcgt
     1741 gatagacgcc gtaaaaaaag agacttccgc cgtctttgga ttgtgcgtat caatgctgct
     1801 tgcagactca atgatttaag ttattcaaga tttatcaatg gtcttaaaaa agcaggtatt
     1861 gaacttgata gaaaaattct ggcagattta gctatgaatg atgctgctgc ttttgcaaaa
     1921 attgcagagg ctgcaaaaaa agcactttaa ttttttagtg taagaatttc aagatttttg
     1981 attcttgaaa ttcttaattt tttagtatta atttaattta gctagaacat cttcataaca
     2041 tttgagttga tttaagatta ttttattaat ctcatttgtc atttctagtt tttgaccttt
     2101 tatattaaga taatagtatt taaaatcact gtatttttgt atgaaagttt ttaaatatct
     2161 aggtttgaaa tcattaaaat tttcaacttc ataaaaaata ttgccactaa actttttgca
     2221 attcccgctc cataaatttc tccaaaacta gaaaaaccaa ctatgggaaa attattaaaa
     2281 tggatttgat ttaaatgttc tttgttgtga agtcttctta agatacaatc attaaaaatt
     2341 gctcctagtg gttttggttt attaagagaa aatttttcat aatctttttt tatagcttca
     2401 ataaaatttg tttttttaag caagcttaat tcctgagcgc tttctatatc acaataacta
     2461 aataatgttt tatttgggtt gattttcata ggggaaataa gatagtcttc tccaattttt
     2521 aaagcaaaag tatattcttg cattttattt ttaagttctt caaaagtaca gttaaaataa
     2581 ttacataaaa cttcaaccgc gttgatggat tgaaaggttt tttattaata aattcgcgta
     2641 cggttttatc atataagctt acatcaagta tggtaaaggt aatgttgctt tgaggattga
     2701 aattttgaga cttcattaaa ttaaaacggt atttaggttt aaattgaaca tgtatgctta
     2761 aagcttgatt tttaatattt ctccgttata aaatataaat gctccgctaa agtccatgtt
     2821 tccgctagac ccacccccta ctaaagcaca aggatagggg ttgtgtttgt acaaaagttc
     2881 taaaagagaa ctttcgcttt gacttaaacc atcataaatt aaataatgca aagtatttat
     2941 gcagtgtgct tcaaaaggta tatttataaa taaaacttct ttttctatca gtttttttct
     3001 ttctgtataa tcttttatat cactaaaaag cttgatttta tttgtgcaaa gattttctat
     3061 catatcttca ctaaaaagta tcaagcttat tccttggata ttttgtttat aaggactgtt
     3121 ttcaatgttt gagttagaat caaggttgca taataaatca gtagcactgc ttaagatgat
     3181 atcacattgc tcatttatag aattttgaat cttatttcct atgatcgcta gattaagttg
     3241 attgacacaa agcctataat taattttggc ttgatgttta ttttttttaa tttttcttca
     3301 agttcatttt attgaagata tggagcttct aaaacttttt tacttcttct tttttttgtt
     3361 gagcttttat ttttaaaatt aaaaaaacat caatttaact ccattaaaac tattttttaa
     3421 ttactagtta actaaatcaa gacaccataa attcggcatt tatttgtaat ttttattata
     3481 ccttaagtca taaaaaatgc aataagtaaa ttaaaattta gatataattg caaattataa
     3541 taatattaat taaggataaa ttaaatatga ttggagatat gaatgagctt ttattaaaaa
     3601 gcgttgaagt attgccacct ttacctgata ctgtaagtaa gttaagaaaa tatgtgagcg
     3661 aggctaattc aaatatagaa actatgaaag ttgctgaaat catttcaagc gatccgttga
     3721 tgatggctaa gcttttgcaa ttagcaaatt ctccttatta tggttttaca agagaaatta
     3781 caaccataaa tcaagtgatt actttattag gcgttggtaa tatcatcaat atagttatgg
     3841 ctgactccat tagagataat tttaaaatag acgtttcacc ttatggttta aatactcaaa
     3901 attttttaaa aacgtgcaat gaagaggcaa cttttatcgt aaattggctt aatgatgaag
     3961 ataaaaaact ttctcatctt ttagttcctt gtgcaatgct tttaaggctt ggtattgtta
     4021 ttttttcaaa ttttcttata caaaatcata aggataagga ttttttagct tttttaaata
     4081 aaaatgaaaa tcttgcttta gcggagaatg aatttttagg cgtagatcat atttctttct
     4141 tgggattttt gttacatcgt tggaattttg atgatgtttt gattgaaagt atatgttttg
     4201 ttcgcactcc tcatgctgct cgcgaaaaag tgaaaaaatc cgcttatgct ttagcaataa
     4261 cagatcatct ttttgctccg catgatggct cttctccatt taacgcaaaa gctgcagttg
     4321 ctttacttaa agaggcaaaa actcaaggaa ttaattttga tttaaacaat cttttatcta
     4381 agcttcctaa caaagctaag gaaaatttaa acaaagaaga ttaaagagcc tttttaaggc
     4441 tctaaattgt agtgatgaaa agtttaatct tacctcctaa tgaattttta gatcactata
     4501 ttttaaacgc tgaatttcat cgttttgctg gaatttcaaa aaatgcttat aaattttgga
     4561 aaaatgtaga aataggtaga tatcaaggaa caagaattat atttttgcat agaaattgca
     4621 ttttagaaaa acatcagcaa gctttaaggc aatgtagtgg tttaaatggt tttgtattgg
     4681 caagtgcttt ttgttctttt actggattag ctccctctca tttagtggaa aaaaataatt
     4741 cttctattta taaactttta gagcttaagg agatttgcgg gattaaattt gttaatttaa
     4801 aaaaatttta tgatttttta gggctaaatt atcatcagca tatttatata gaaaaatgcc
     4861 atttttttag cccagctcct tttgaaaagc gtattaaaat cactgagagt atgtgcgttg
     4921 ggtattatta agataagaaa aaataaatgc acatagcaaa gctataatag ccaaaaagaa
     4981 aacataaagt cccaaagaaa aacgccaaaa attacttaaa ttatttaagg caaaactatg
     5041 caagaaaaaa gcaagttgcg gagttaaacc tccagctata gcataagcaa tattatatga
     5101 aaaagaaagt cctgaaaatt taatttttgc atcaaatact tcactcatta ttaaagggca
     5161 aaaattcatc actccgctaa aaaaacatac aagtaaatat aagcaagcta ctaggttaaa
     5221 atcagcattt tgtctatata aagtattaaa ataaagcaag cttgcaattc caaaaaaaac
     5281 actaaaaaat acacaagatt tgataatgct tattttatcc gctaaaattc cacttataat
     5341 acaccctagg caaataagta aaattccacc tatttgaaga taggtttgta tagaagtatt
     5401 aatttgaagt atttttgcca tataactagg cataagcaaa atcattacaa caatacaacc
     5461 tgtcaaaacc caagtaatca tcatagaaag aacaattccc attttagctt ttttaaacac
     5521 ttcttttaaa ggaaattttt ctaaagcctt gtcttttttc atttgttcaa aaacaggagt
     5581 ttctcttaaa aattttctca aataagcaga aataatccca aaaattccac ctaaaaagaa
     5641 tggaattctc caagcccatt catgaagttc ttcttgggta taaattttat tcataattaa
     5701 aaaaactaaa ctacctaata aaattccacc tacaaccgaa gcggttaaaa ttcccaaata
     5761 agttcttttt tgaccttgtg gtgcgtgttc gtatacaaaa acccaagctc cagggagttc
     5821 cccgcctata gctatacctt gacaaatgcg tataaaaact aaaaatacaa tgcaaagaaa
     5881 acctatgctt tcataatttg gaataaaagc tagagtaaaa gttggaataa ccattaacaa
     5941 aatactaatc ataaacattc ttttacgtcc aaatttatct ccaaaatgtg ccagtatcac
     6001 accccctaag ggacgcgcta aatatccagc tgcaaatatt ccataagtat taaacatttg
     6061 ccaaaaacta cttaaatctt ttggaaaaaa gtttgttgaa atataatttg caaaaaatac
     6121 aaaaataata aaatcataaa attctaaagt tccacctaat gatgaaagtc ctaaaacttt
     6181 tatatctttt tggttaaggg ttttgttcat tcttaatctc catctcataa aaatcatcat
     6241 cattgttatc atcatcgtat tcataatcat catcatcata attataattt ttatggtgat
     6301 tttgtgtata ttcttcatct tcattctcat aatcatcgta atttaaatct tcttcatctt
     6361 cataagccat tgttttctcc ttaaataaaa atacaaagct tattttatct taaatttgtt
     6421 tggttttgct ataattttta taatttttta aaaggtgaat ttatgaaatt aagtcattta
     6481 gatgaaaaaa atcatcctaa aatggtagat gtaagcgata aaaatattac ttcaagaata
     6541 gccacagcta gtggtatgat atatatgagt caagaagctt ttgatgtaat taaaaacaat
     6601 accgcaaaaa aaggtcctgt tcttcaaaca gctattattg cggctataat gggggctaaa
     6661 aaaacaagtg aaattattcc tatgtgccat cctttgatgc tttctaagat tgaaacagat
     6721 attgtggaat ttgttaaaga atgtgcattt aagcttattg taacagttaa gtgtgaaggt
     6781 aaaacaggag ttgaaatgga agctttaagt ggagttagta taggactttt aactatatat
     6841 gatatgatca aggctataga taaatcaatg agaattatgg atatagtgct tgaaagcaaa
     6901 gaaggaggta aaagtggtaa atttgtgcga tcttaaaaaa gaacctcaga tcaattatcc
     6961 tactttttgg gattataagg tgatttttga ggtgcatatt aaggcaagtg aaatttttga
     7021 agaaatttta ggtcaaagag aatataaatt tgaacattcg aattcaagtg cgagtggaaa
     7081 atatcaaagt tatttgttaa atgtttatgt tgatagcaaa aaagatcgtt tggatatatt
     7141 tgataaatta aaagctaaag caaaatttgt actttaagaa agaaggaaaa atgaaaaata
     7201 ctttaattat ttttgaaaat tctttatcaa atctcggtaa agatgaagca agtgatttac
     7261 ttgaagactt gagttttaat cttgcgtata agcaaatttc acataatcct catgaaacaa
     7321 aaaaagtttt aaattctctt ttggttgaat ttttaactat tttgaaaaaa cttgattttt
     7381 ttgatgatga aaatgttaca aaggttatca aagctttggt taaggcgagt attgtagatg
     7441 ctcaaaattc actttatggg tatattagcg aagctgaatt attaaacaaa cagattgaaa
     7501 atcaaaagaa tttgattaaa aatcaaatca gcgataattt ttttgaattc gagaatattt
     7561 tacaagaatg ttctttttgt gatgaattta gtggcggttt aaatgatgct attttatttg
     7621 atatagaaat gcttggaatt ttaaaagaaa ccgctgaaag tgctttttta actacattag
     7681 aaaaggctga agatatagaa cttacaagta gtgaaatagc taaaaatctt gtatataatg
     7741 ccatttgtga agctcatttt gaaaaagaaa gaattttaaa aatttcaagt attattttaa
     7801 ataccgcttt tgaaatagct aatgaatcta tggcttatgc aaaagatctt tgtttaggcg
     7861 tgattaaagg cacaagggat ggtattgttt tggcaatgga aaaatttaaa gcttcattaa
     7921 cttatgcaaa ttttgaagaa gatgttagtt taaaaagcaa agaactaata ggtatagaag
     7981 atgattttat tgctctttta aaaaaagaga ttcaattaca aaatgatcct tgtaagagta
     8041 tagttgagaa tttgctagaa catgaacttg ataatctttt tgctaaattt agacgtcttg
     8101 caggtgaaag cagagagcaa ctaatattag ttttaaatga tattaagaaa aatccaaaga
     8161 ttaatgattt taacaaactt actcaaagaa aattaaatcg ttttaaacaa gaaatttttg
     8221 aattagaaaa aattgctagt gaaaaataca aagatttaaa ttccaaaaaa gctaaaaagc
     8281 tcggtgtaag actttgggaa aaagcaaaaa aattcgttaa aaaataatat cccatttttg
     8341 ggatattaaa tatctatttc tatacctaca ggtgcgtgat cagagccaaa aatatcatct
     8401 cttatgaaag cgtttttaag tttatctttt aaaccctttg aaatgaaaaa ataatcaatc
     8461 ctccagccta catttctttc tcttgctttc attctatagc tccaccacga gtatttttct
     8521 ttgatttcac cattaatttc tctaaaagta tctataaaac caagctttag caaatcatca
     8581 atccaagctc tttctatagg taaaaaacct gaagtgttgg cattggcttt tggatgagta
     8641 agatcgattt ctttatgagc ggtattgaca tcaccgcaaa tgataatttc aaatccatcc
     8701 tttaaaagtt tatccaaata cactaaaaaa tctgcataaa atttcatctt aaaatttaaa
     8761 cgctcttcat ctttttgacc atttggaaaa tagatattaa aaagtgcaat atttttaaag
     8821 cggtgttcta aaaccctacc ttcttcatca tcaaaaaatt cgcatttttt tacttcgcta
     8881 ttaaaattac aaagactcat taccccagaa taccccgctc ttttagcaga attaaaatac
     8941 atgtgtttaa aaggatattc ataaattttt ttaggaaatt tatcttcatg tgctttgatt
     9001 tcttgaaaac ctataaaatc aatttgttct tgtgctatcc aatcaagtgc atttttatca
     9061 caaatagctc ttaagccatt gacattccat gaaagtagtt tcattatttt ccttaaaatt
     9121 ttcattaaaa gtgtaaatca taacataaaa agatttaaaa ctacaatcca tttaaaaaaa
     9181 ttcaataaaa ttaaaagctt aaatttggag gtgggattta tatgcttaga ttaacttggc
     9241 ttcagtttac tttttttaat tctttgatga ttgtattgtt gaattttaat ttattttatt
     9301 ttgtgtatga aaaaaataca caaaactggt ttataacttt tgtttttatt gtggcctatt
     9361 ttgcccttgt tcacgtgatt tgctctttgc tt
//
LOCUS       DAPIWV010000069         9076 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.070, whole genome shotgun sequence.
ACCESSION   DAPIWV010000069 DAPIWV010000000
VERSION     DAPIWV010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9076
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.070"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            43..471
                     /locus_tag="RJ272_001195"
     CDS             43..471
                     /locus_tag="RJ272_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382275.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSNSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            537..1793
                     /gene="murA"
                     /locus_tag="RJ272_001196"
     CDS             537..1793
                     /gene="murA"
                     /locus_tag="RJ272_001196"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDV7382276.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGAKITRLEE"
     gene            1790..2950
                     /locus_tag="RJ272_001197"
     CDS             1790..2950
                     /locus_tag="RJ272_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7382277.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(2972..3820)
                     /gene="lepB"
                     /locus_tag="RJ272_001198"
     CDS             complement(2972..3820)
                     /gene="lepB"
                     /locus_tag="RJ272_001198"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDV7382278.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDKFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3830..4678)
                     /gene="folD"
                     /locus_tag="RJ272_001199"
     CDS             complement(3830..4678)
                     /gene="folD"
                     /locus_tag="RJ272_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDV7382279.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGAMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            4758..5105
                     /locus_tag="RJ272_001200"
     CDS             4758..5105
                     /locus_tag="RJ272_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382280.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            5102..6376
                     /gene="hemL"
                     /locus_tag="RJ272_001201"
     CDS             5102..6376
                     /gene="hemL"
                     /locus_tag="RJ272_001201"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDV7382281.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLV
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            6373..6702
                     /locus_tag="RJ272_001202"
     CDS             6373..6702
                     /locus_tag="RJ272_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HDV7382282.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            6702..7205
                     /locus_tag="RJ272_001203"
     CDS             6702..7205
                     /locus_tag="RJ272_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382283.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSLLNHFKLDIFLSYEIAFFSVL
                     LIIFASYLNYKKVIIKKSKNYEKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNVKE
                     KIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKK
                     YESKKNY"
     gene            7183..8370
                     /locus_tag="RJ272_001204"
     CDS             7183..8370
                     /locus_tag="RJ272_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382284.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFIGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMTSLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            8363..>9076
                     /locus_tag="RJ272_001205"
     CDS             8363..>9076
                     /locus_tag="RJ272_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7382285.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQTLK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKL"
BASE COUNT         3264 a         1391 c         1416 g         3005 t
ORIGIN      
        1 tgtcgattta gtgtaatata tattataaat taaggagaaa atatgcaaat taacaattcc
       61 ttaaatagct taagtcaata tgttaaagtc aactcaaacg aagaaaatca aaactctaaa
      121 aatcaagaac aaaacgcttt agcgcaagat ccagctgtag aggtaaatat cagcaaagaa
      181 gccaaagaaa aatcaaatac ttctaatcaa aacaattctc aagctccagc tcaagcttta
      241 aacgcacaaa acaacacgca acaagatagt agcagcaata gtgaagataa acttacagaa
      301 ttaacacaaa agcttgcaga aattcaagca aaaattgttg aactaactgc gaaaatgtct
      361 aaagctaatg aggatcaaat caaaagtatt gaaagtcaaa tagcaacatt aaatgcccaa
      421 gcttcaacta ttcaagctca aattcaagaa ctccaaagcc aacaagcttg attatatttt
      481 ttcaaaagtt taagaatgct ataatgatgc atttttaaac tttttcaagg aaaaatatga
      541 cttatctaga aatcgaaggc acaaatcatc taagcggaaa tgttacaata agcggagcaa
      601 aaaatgctgc cctacccttg atcgtttcaa gtatacttgc taaaaatgaa gtaaaaatca
      661 acaatgttcc taatgttgct gatataaaaa ctcttatatc tttgctagaa aatttaggag
      721 ctaaagtcaa ttttcaaaac aatagtgctt tattaaacac aaacactctt aatcaaacca
      781 tagctaaata tgacattgtg cgtaaaatgc gtgcttctat acttactcta gggcctttgc
      841 ttgctcgttt tgggcattgt gaagtatctt tgcctggtgg atgtgccata ggacaaagac
      901 ctattgattt acatctttta gccttagaaa aaatgggggc aaatatacaa atcaaacaag
      961 gctatgtcgt agctagtgga aatttaaaag gcaatgaaat tctttttgat aaaatcacgg
     1021 ttacaggtag tgaaaacatc atcatggcag cagctctagc taaaggtaaa accaaactct
     1081 taaatgttgc aaaagaaccc gaagtagttc aactttgcga agttttaaaa gacgcaggac
     1141 ttgaaattaa aggcataggt acagatgaac ttgaaattta tggtagcgat ggagaacttt
     1201 tagaatttaa agaatttagc gttatacctg atagaattga ggcaggaact tatctttgtg
     1261 caggggctat tacaaattct aaaattactt tagataaagt taacgccact catcttagtg
     1321 cagttttagc aaaacttcat caaatgggtt ttgaaacttt gattacagaa gatagtatca
     1381 ccctacttcc tgctaaagaa attaaacctg tagaaatcat gacaagtgaa tatccaggct
     1441 ttccaaccga tatgcaagcg cagtttatgg cactagcttt aaaagctaat ggaactagta
     1501 ttattgatga aagactattt gaaaatcgtt tcatgcatgt aagtgaactt ttaagaatgg
     1561 gtgcggatat taaactcaat ggtcatattg ctactatagt aggcggaaaa gaacttaacg
     1621 ctgctgatgt catggctaca gatttgcgcg cttcttcagc ccttatctta gcagctcttg
     1681 cagctaaagg tacaagcaaa gtccatagaa tttaccatct tgataggggt tatgaaaatt
     1741 tagaagaaaa atttaaagat ttgggtgcga aaatcacaag gcttgaagaa tgaaaaatat
     1801 ctttgaaacc ttaaaagact tagaaaatca aatttcatgt ttagatgaaa gtgagcttat
     1861 tagccttgaa aaagcaaagg atagaatttt agctaaagat ttatacgcta gaaaaaatct
     1921 acctagtttt gacaatgctg ctcttgatgg ctatgctttt aattatactg atatcaatga
     1981 ggctttggag attaaaggga ctatttttgc aggagataaa aatttttata cagttgctaa
     2041 aaatgaatgc tataaaatca tgacaggggc taaaatgccc aaaaatgctg atactatctt
     2101 aatgctagaa gatgagtata tagaagaaaa taaactcatc attaaaaaag ctcctaaaca
     2161 atacaatgcc tatcgctata aaggtgaaga attaaaaaaa ggtgaaattt tacttcaaaa
     2221 aggtaccaaa cttaatgata aacatatcgc cctgcttgct tctcaagggc tttataaaat
     2281 agaagtcata agaaaaattc gcataggtat tttttcaagt ggaaatgagc taaaagaacc
     2341 ttggcaagaa tgcgatgaag aaagtattta taatgccaat gctttgcctt tactaactat
     2401 gcttcaaaat gcttcttatt tgggtattat caaagatgat tttaaaagca ctaaagaggc
     2461 tttagaaaat acaaattttg atcttttaat cacttcagga ggtgcaagcg ttggcgaggc
     2521 tgattttatg gaaaaagctt tagatgaatt aggctttact ccgcttttta aaggtttaaa
     2581 agcacgccct gcaagaccta ctaagcttta tagaaaaggt gaaaatttcg tattgatttt
     2641 accaggaaac cctatggcag cttatctttc ttgttttatt tttgctaaaa aaatcattaa
     2701 tttattaagt ggaaacctag acaatccttt aacattttat ggcaaaatgg gtatggattt
     2761 aaagcttaaa agcggaagaa ataatctcat tttaggaaat ttagaaaaag gtatttttac
     2821 accatttaac gaaaacaaat ttggctctgg tatgatactt ccacttatta aaagtgagtt
     2881 tttgcttata agcgaagaaa atacgagtga attaaaaaaa ggtgatgaaa tcacgctttt
     2941 aaaaatataa tgtttgtgtt tttcacaaac attagcttaa tttatcctca tcatcatgat
     3001 catggatata ttgctcatca ttttccaagg tatcaacaaa acgccctatc ctttcccagc
     3061 gaacattttt atctttatcc caagagaaat atacaaacca aggtttacct actatcaacc
     3121 tataaggaac agaaccccaa aaacgactat cataagaata atcgcgatta tcacccatca
     3181 tgaaatactc attttcaggt acatcaaaaa cataagcatt tccgccgcta aaacctatat
     3241 gatttccaag ttctttaata taagctggag acatggcaaa atcacctatg ctaagaaagc
     3301 gtaaaatatc gctttctata tctttttttg gatcataatg aatacctttt tgtttataag
     3361 gttcttttac ataaatttgc cctccaagag taacaagatc attcggataa tgttctttca
     3421 taaatttatc accctcatgc attcttacat aaagtgtttt atttgcataa actatcctat
     3481 ctcctcctgt gcctacacaa cgctttacaa agtgttcttt ttcatttcta ggatttctaa
     3541 aaacaactat atctcctctt tgtggccctt gtgcttttat caaatgccca tctttattaa
     3601 aatccggcaa aacaggaatt tccaaccaag gaatatgagg agttgggata ccatagctaa
     3661 attttttaac aaataaaaaa tcccctacta ataaggtgtt tttcatagaa ccagaaggaa
     3721 taacaaaagc ttgtataaag aaaaaaatca ccaaaagaac aataactaca gttccagtcc
     3781 aagactgtga aaatttatat aatttcttta aaatttccat agattttccc taattaagtc
     3841 tatttttagc agatttaact gtgttttcta aaagcatggc tatagtcata ggacctactc
     3901 cacctggaac aggagttata taactagatt ttttagatac ctcttcaaaa tctacatctc
     3961 caactatctt tccactttca agacgattga ttccaacatc aacaacaatc actccttctt
     4021 ttaccatatc cgatcgaagt aaattcacac aacctgctgc tactataatc aaatcagctt
     4081 gcctagtata aaggctcaaa tctttggttt taatatgaca aacgcttact gtagctccag
     4141 catttaaaag catagtagcc ataggacgac ctactatatt tgaagcacct ataataacag
     4201 cgtcttttcc ttctaaatca atttcataag ccttcaaaag cttcatagct ccaagtggag
     4261 tacaaggcaa aaacccactt tctaagccta aatttaaata tcctacatta ataggatgaa
     4321 agccatcaac atctttacta cttataatac tttcaagtat taaatcttta caaatatgat
     4381 caggtaaggg aagctgaacc aaaattccat gaacactatc atcgtgattt aaggtattaa
     4441 tcaatgccaa aagttcattt tgtgtagtat tttcattaag atgataaact aaagatttaa
     4501 ttccacattc ttcacaggct ttagccttag attttacata agtttgactt gcaggattat
     4561 ctccaaccaa gataacagct aaacagcttt caatcccttt gcttttcaaa aattgatttt
     4621 tttcttttaa ttcttctttg atttttgcgc ttaaagcttt accatcaagc aaagtcatta
     4681 ttttccttct ataaatttaa tcactttttt aaagtaaaaa ttgtatcata ttaaaacttc
     4741 attaacaagg tgaaactttg aaaattgttt taatgttttt tttatttagt attagtcttt
     4801 ttggtgctga ttttatcact cttaaagaat actctaaaat gctttatgaa aatccaaggg
     4861 gcattagttg taaagaatgt catggagcag atggaagcga acaaatttta ggatattata
     4921 tgaaaaatgg tattaaaaca gcttataaag ttccaagtat acaaaatctt agttttgaaa
     4981 attttaaaaa ttctcttaat cagagtaaag acgcaaaatc aatcatgcca aattactctt
     5041 taacaaatga tgaaattgta actttatata attacatcaa gcaatttagc aaggaagaaa
     5101 aatgacaaac aaaaaagctt ttaaagaagc gtgtaaattc atcgcaggtg gtgtaaattc
     5161 tccagttcgt gcttttgcaa atgttcaaag tgagccaaaa tttatttctc atggaaaagg
     5221 tgcttatatt ttcgatatag atggaaattc ttatatagac tatgttcaaa gctgggggcc
     5281 tttgcttttt ggacattgcg ataaagatat acaaaaagct tgtcaaaaag cacttcataa
     5341 aggttcaagt tttggagctc caactttatt agaaactgaa cttgccaagc ttgttttatc
     5401 tgattttcct catttagaaa agatccgctt tgtaagcagt ggaacagaag caaccatgag
     5461 tgctattcgt cttgcccgtg gttttactaa aaaagataaa attttaaaat ttgaaggatg
     5521 ttatcacggg cattctgatt cattattagt gagtgcagga agtggtgctg ctacttttaa
     5581 ctctcctagt tctttgggtg ttttagaaga tgtagctaaa cacactttag tagctaaata
     5641 taatgatata aatagcgtta aagagctttt tgaaaaaaat aaagatattg catgtgttat
     5701 cattgagcct attgctggaa atatggggtt agttccagct aaacaagatt ttttagaaga
     5761 acttgctaag atctgtaaaa acaatcaaac tctgctgatt tttgatgaag taatgagtgg
     5821 atatagagca tcttaccttg gttcctatgg aatcaatcat atccaagcag atataattac
     5881 ttttggtaag gtaataggag gcggtctacc tgcagcagca tttgcttcta gagctgaaat
     5941 tatggatatt ttaagtcctt tgggtggagt ttatcaagca ggaactttaa gtggaaatcc
     6001 tttggcaatg gctgcaggta tagcaagtct tacaaaagcc aaaaagaaaa ccaagcttta
     6061 tgacaaactt ggaaaattag caaaaaaact tacacaagga atgaaaaaat tagcagatga
     6121 aaaaggactt ccgctgcaag cttgtcatgt aggttctatg tttggatact ttttcaccaa
     6181 agatcctgta tcaaactacc aagatgcatt aaaatctgat ctagcattat tttcaaaatt
     6241 tcacaaaaat atgcttgaaa atggaattta tttagtacct tctcaatttg aaacaggctt
     6301 tatatgttca aaaatggatg ataaaattat agatacaaca ttagaggctg ttagggaaag
     6361 ctttaaaaga atatgagcaa tattttaaaa gaagaaaaaa atcacttaga aaattccaac
     6421 agcaaaagac aaaaaatcat tcgcaaaact cttgaagctg cggatggttt aagtcttggc
     6481 atctctatgg ttgttgctgt atttataggt gtgggaatag gatatttact taaaaaattt
     6541 actccttatc cttggctttt ttggcttgga gttttttggg ggatcagtgc tgctatactt
     6601 aatgtttaca aagcttataa agttcaagta aaaagctatg aagaatttaa agaaagagat
     6661 gagttgatca aagaaaaaat tcaaaaagaa aagaacaaat aatggaacat aaaaaagctc
     6721 tattttgtat ttttgccatt attcatttat ttttttggat catattttca ttgttaaatc
     6781 attttaaatt agatatattt ttaagctatg aaatagcttt ttttagtgtt ttattgatta
     6841 tttttgcttc ttatttaaat tataaaaaag tcattataaa aaaatcaaaa aattatgaaa
     6901 aagattttaa tttcatttca tcacttttta tcaaaaaaaa acaaaattta tcaaaaatta
     6961 ttcattttaa agttctaaaa gacgatttaa agccaaatgt taaagagaaa atccattttt
     7021 ttgctatgtt ttttactctc tttaaattga tggcttatgt aatattggtt gctggatttt
     7081 tatttttaca tcgccaagat aaattagata tctttgctta tatttgtgga atttcatcct
     7141 tgctagtttg tgtgtttatt tttattttat atataaaaaa gtatgagtcc aaaaaaaatt
     7201 attaaatcaa tgacagcact ttttgctggt atggcatttt tatttgcagg taatgccttg
     7261 atagtaagct ctataggtgt tatattaaaa gaaaacggag aaagttcttt agctgttgga
     7321 gtggtaagtt cttgtttttt tataggcgct cttgttggaa ccatcagtgc tcataaaatt
     7381 atttctcgta taggtcatat acgctctttt gggctatttg gtgctatttt tggaatttca
     7441 gctatgcttc atacagtaag cgaaaatctt attttttggg ctgttttaag atttttcata
     7501 ggaatttgct actatggact tttaatggtc atagaatcat ggcttaatga aaaaagcaaa
     7561 aatgccattc gatctagaat tttaggtttt tatgaaattg ttttttatct tgcgtttggt
     7621 attggagttt taatcatagc gttaaattta agcaaacata gtgtatttat cctcagtgca
     7681 actttaattt tactttcatc tttaccttta aatctaatta aaatcaaaga acctgtttta
     7741 cccgcatcaa gtcctatttc tatacctaaa atttttgata tagctccttt agctatcgtc
     7801 acaagcttta tagccggaat gcttataaat ggcttttttt ctatgacatc tttatttata
     7861 cttttgcaag gttttgatac aaaagcggtt tcttatttta tattttgtgg ggttttaggt
     7921 ggttttattg cacaaaccat cataggaact atttcagaca aacttggtcg caaatttgcc
     7981 attatcactt gtgcaagtat aggatttatc actatgctta tatttatctt ttttaaactt
     8041 catttatata tgcaatattt tttaggaatt actcttggta taggaatatt ttgcttatat
     8101 gctttagcac ttgctagagc aaatgatgtt ttagtaagca aaaataaagg tgtagagtta
     8161 ggtcgtgggg ttcttttttg ttattctttg ggctctttgt ttggcccttt aattttaggt
     8221 tttttaatgc aatattttga aatcaaaggt tttatatggt tttatatagt ttctttagca
     8281 tttttaattc tttttgctat caataaacca aatattttaa ataaaaaatt taagaaaaag
     8341 cctggaaata tggtgatatt tgatgattaa tactcaacta gcaagtcaaa ttgccaatac
     8401 gcaaaaaaat gatttaaaag tagataactc tgcttcaaaa gataaaacaa atttaaaaga
     8461 caatccaaaa gaagcacttg cacaaacttt aaagcaaaat ttaggtttaa gcaaggacgc
     8521 tagtagcgag gaaatactag caaaatttgt tcaaaatgaa acaggtacca aattaaaaga
     8581 acttgttaat aaacttttag atcaaatcaa tgctcaaaaa aatcccgatt cccctgtact
     8641 taaacaagga aaaaatttaa atttagctcc taattttgct aatgaattaa aaatcttaag
     8701 tacagaactt gcaaaaagtg atacttttac acaagtttta gacagattaa atcaaatttt
     8761 aaaacctgcc agtgaaataa aaaacaataa cttagctcct ttgtttaaaa attcaggcgt
     8821 atttttagaa gctaaattaa aagatgccct aaacgaagaa ttactaccca aaagttttca
     8881 ctctctttta agtacaatca aaggtcttag tagcgaaaaa ctaagcgttc agatagccca
     8941 gcttgcaaat acaaatttaa gcccaaaaga cactttaaaa gaattaaaaa atattattaa
     9001 ttctagcaaa aatgaaaata agcaaatttt aaatcaaagt tcttttaaag cacttttaaa
     9061 tttaagttct aaattg
//
LOCUS       DAPIWV010000070         8578 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.071, whole genome shotgun sequence.
ACCESSION   DAPIWV010000070 DAPIWV010000000
VERSION     DAPIWV010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8578
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.071"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(67..519)
                     /locus_tag="RJ272_001206"
     CDS             complement(67..519)
                     /locus_tag="RJ272_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDV7382286.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMKIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNRGLEIKRFLLENEGVNLK"
     gene            574..3120
                     /locus_tag="RJ272_001207"
     CDS             574..3120
                     /locus_tag="RJ272_001207"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDV7382287.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNIPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            3180..4417
                     /locus_tag="RJ272_001208"
                     /pseudo
     CDS             3180..4417
                     /locus_tag="RJ272_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
     gene            4414..5163
                     /locus_tag="RJ272_001209"
     CDS             4414..5163
                     /locus_tag="RJ272_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7382288.1"
                     /translation="MKTAFITGASSGFGRACVEAFMQEGYKVIALARRKERLEELKNA
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPTLRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            5160..6893
                     /locus_tag="RJ272_001210"
     CDS             5160..6893
                     /locus_tag="RJ272_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDV7382289.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLTFVNYYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFATRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGALNTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            6890..7963
                     /gene="trmA"
                     /locus_tag="RJ272_001211"
     CDS             6890..7963
                     /gene="trmA"
                     /locus_tag="RJ272_001211"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDV7382290.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLHQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKVLATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(7950..8366)
                     /locus_tag="RJ272_001212"
     CDS             complement(7950..8366)
                     /locus_tag="RJ272_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HDV7382291.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGAFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            8485..>8578
                     /locus_tag="RJ272_001213"
     CDS             8485..>8578
                     /locus_tag="RJ272_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDV7382292.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASY"
BASE COUNT         3056 a         1286 c         1432 g         2804 t
ORIGIN      
        1 ttaattcttg aaaattatga tatttttgaa caagaatttg aaaacaaaga aaatcaaacc
       61 ccaagcttat tttaaattca ctccttcatt ttcaagcaaa aatcttttta tttcaagccc
      121 tctattatat cctcctatgc cattgtttgc aataactcta tgacaaggta taaaaatagg
      181 aatttgattt ttagaatttg catttccaac ggctctaaaa gcttttggat gattaatttt
      241 ttctgctata tctttataag tagctatttt gccataagga attttcatta aagccttata
      301 aacctttgat tcaaaatctg taccttgtat caaaacagga atgctaaatt ttctaagctt
      361 atgagtaaaa tataaatcaa gttcatattt tgctaagtca agcaaactac aatttttttc
      421 tgatctttta ttatcacaaa aatcgactct agttaaaaat tttccatcac tatgtaaaga
      481 taggtaacat aaaggcattt tataataaac tttaaacatt ttttatcctt caaagagcta
      541 caattataat aaaaaatatt taaggagtag aaaatgtctt ttatgcaaga atacaataaa
      601 cttgttgaag aaagagccgc tttgggtata ccaccccttc ctttaaatgc aaatcaaact
      661 agagaacttt gtaaattact tgaaaatgaa aataatgaag agcttgcaaa tcttttagaa
      721 aatagagtaa atcctggtgt tgatgatgca gctttagtaa aatgtgaatt tttagattcc
      781 atacttaaag gcaaaatcag tgctccaaat atagacaaaa aaagagcctt aagaatgctt
      841 ggaactatgc taggcggata taatgttaaa gttttaatcg atgccttaaa agatgaaaac
      901 atagccaaag atgctgcaga agtgttgaaa aatattattt ttgtacatga taatttccat
      961 accatagctg aacttagtaa aaacaatcca cacgctaagg aagttttaca aagctgggca
     1021 aatgcggact ggtttaataa aaaagaaaaa ctaccacaag tgattaaatg tatagttttt
     1081 aaagtagcag gcgaaacaaa taccgatgat ctaagccctg caggagatgc ttttacaaga
     1141 agcgatattc ctttacatgc aaatgccatg ctaaaggtaa gacaaacagg atccttagaa
     1201 aaaatcaaag agcttaaaaa aagcggtcgc gaagtggttt atgtaggtga tgttgtagga
     1261 acaggttcaa gtagaaaatc ggcaataaat tccatacaat ggcacttagg aaaagaaata
     1321 gaaggtgtgc caaacaagca cagcggtggt atagtaatgg gttcaaccat agcaccgatt
     1381 ttctttaaca ctgctcaaga tagcggggct ttacctatca tctgtgatgt aacaaactta
     1441 gaaatgggcg atgagtttga aattcatcct tatgatggaa aaatcataaa aaatggctct
     1501 gcaatcgcag aatttacact cagtccaaac actctcttag atgaagttag agcaggagga
     1561 agaatcccac ttatcatagg tcgtgggctt tgtactaagg ctagagaatt tttaggaatg
     1621 gaaagcgaaa atatctttac caaacctgaa caacctaaat cttcaagcgg tggttatacc
     1681 ttggctcaaa aaatgctagg tcgtgcctgt ggagttgaag gtgtgcgtcc aggtatgtat
     1741 atagaaccta taactttaac cgtaggctct caagatacca caggtcctat gactagagat
     1801 gaaattaaag aacttgcaag cctaggtttt aatgcagact ttgttatgca aagcttttgc
     1861 catacagctg cgtatccaaa agtaagcgat tcaaatttac ataaaacctt gcccaatttc
     1921 atgacaagtc gtggtggggt aagtttaaaa ccaggtgatg gagttatcca ctcttggctt
     1981 aatcgttttg tattaccaga tactgtagga acaggcggag attctcatac acgctttcct
     2041 ataggaattt ctttccctgc aggaagtgga cttgtggctt ttgctgcggt tactggttct
     2101 atgcctttaa atatccctga aagtgtttta gtgcgtttta gcggggaatt acaagctgga
     2161 gttaccttaa gagatttggt taatgctata ccttattatg caatcaaaca aggacaactt
     2221 accgttgaaa agaaaaataa gaaaaatatt tttgcaggaa aaattttaga aatagaaggc
     2281 ttgccaaact taaaagtcga acaagctttt gaacttagtg atgcaagtgc tgaaagatct
     2341 gcagctgctt gcagtgtgga tttaagcata gaaagtgtaa gcgaatatat caaatccaat
     2401 atttctttaa ttgaagctat gatagaagca ggatatgaga ataaagctac ccttgctaga
     2461 agggctgaaa aaatgagaga atggcttaaa aaccctactc ttttaagagc agataaagat
     2521 gcaaaatacg cttatattat agatattaat cttaatgaca ttaaagagcc aatcctagct
     2581 tgtccaaatg accctgatga tgtggcaacc ttaagcgaaa ttttagccga tgataagcgt
     2641 ccaaaaaata tagatgaagt ttttgtaggt tcttgtatga caaacatagg acattataga
     2701 gctttgggag aaattttaaa agataaaggc atacttaaaa ccagactttg ggtagtgcct
     2761 ccaacaaaaa tggataaagc acaacttacc aatgaaggtt attacagcat ctttggcgca
     2821 gcaggtgcta gaatagaagt tcctggttgt tctttgtgta tgggtaatca agctagagta
     2881 aatgatggag ctgtagtttt ctcaacttct acaagaaatt ttgacaaccg tatgggaatg
     2941 ggtgctaaag tatatttagg cagtgcagaa cttgcggcag tttgtgcgat tttgggtaaa
     3001 attccaagca aggaagaata cttacaaatt gttagcgaaa aactaagtga tgagcataaa
     3061 gcaaatatct atagatattt aaattttaat gagattgaaa atttcaaact tgaaaattaa
     3121 ttcaaattta atacttattt ggattaaata acaaaattaa aattttcaaa ggaaaaatat
     3181 tgaagttatt attcgcttcc ttttgttgtt ttgcaagttt aatggctagt gatgccatta
     3241 actgcgacaa cattaaaaat aataaaacat tgctaaatga aagttcaaat ttagattatt
     3301 taaatatagc ttcaagctgt aaagaatctt taaaaaatca agattttaca aaaaaactct
     3361 atgcaatttc caatgaaatt cgcggaagca atagctcttg taatggtgtg acttatttgc
     3421 caaaattaca acaatttgat tttttattat taaaaatagc tatcgatccc atcgcttatc
     3481 aaaaaacttt agatacaccc gaaaatttag aaaaaaaata tgatatttta aaatcttatt
     3541 ttagatattg ggcatatcaa agtataggaa attttagact ttacaaagct ttttggaaag
     3601 aatacaataa cgctatagaa cctttagaaa aatattttga aagtaatttt aattttgata
     3661 aaggtagtaa tatttactat actagcaatg ccttaaacga atttttaaat tgggctgttg
     3721 gtgaaacaaa aatttacaaa gacattagtc ctttagcaaa aatcatgtca aataaaaatt
     3781 attcagtatc ttatatacaa gattttattt tttcaaataa tccaagccaa gataatctta
     3841 ctatagcctt gcaagcagcg cttctaaatc aaagagaaaa agaaatttta gaacttttga
     3901 ttcgttttgg tgctaggatt gacgaaggtt atgaaagtgc tattttttac gcattggaaa
     3961 attatgaaaa tacaaacttt ttaatccaaa atggagcaaa tgttaatcaa gccaatgcct
     4021 ttggtaaaac cccgcttttt tatgccatag agtttaatcg tcttgatatc ataaaactac
     4081 ttcttgataa tggagcaaat gttaatcaaa aatatattaa taacaatgaa aaattagcat
     4141 taagtgcgaa cataggttca aatacgcctt attttattac attttgtgct ctagagcaca
     4201 cttcaaaaaa tgttttaatg catgctgcgg cctatggaaa tgttgaaatt ttaaaacttc
     4261 ttatttcaaa aggagcaaat tttaatactg ttgatgatct tggttttaat gcacttgact
     4321 ttgcgctaca gcaggtaaaa aagaaaatgc tgattatcta aaaagcttag gtttaaaagc
     4381 aaacgaaaat ctattttacg gaggtagttt agaatgaaaa ccgcatttat tacaggagct
     4441 agttcaggtt ttggtagagc ttgcgttgaa gcttttatgc aagaaggcta caaagtaatc
     4501 gcccttgcta gacgcaaaga gcgtctagaa gagttaaaaa atgctcacaa agataagatt
     4561 tacacgcttt gcatagatgt aagaaatcaa aaagaaatct ttgaggctat tgaaaattta
     4621 cccaaagaat ttcaagaaat tgatgtgctt tttaataatg caggtttagc tttaggggta
     4681 gatgaatttg ataaattaaa ccttgaagat attaacacta tggtagatac aaacatcaaa
     4741 ggatttttat atgttgcaaa agctgttatt cctacacttc gcaaacaaaa aaatgcttat
     4801 atttttaact taggttcggt tgcaggaaga aatccttatt ttggaggcaa tgtatattgt
     4861 ggaaccaaag cctttgtagg acaattttca ttggccttaa gaaatgatct tagaggaagc
     4921 aatatcaaag taacaaacat tgctccagga ctttgcaaaa ctgaatttag tgaagtgcgt
     4981 tttaaaggag atatccaaaa agctgatgca gtgtatgaaa atacgcaatt tatcagtgct
     5041 aatgatattg ccaaagtggt aatgtctatc attaacctac caagtcatat taatgttaat
     5101 gaaatcgagc ttatgcctgt cacacaaact tggaatggat tttatataga aagagatgaa
     5161 tgaataaatt tttagtttta ttgtttttac ctttagttgc atttgcaaac tcctcagaag
     5221 cagctgcaaa tgctaattta tttggagctt ttacacttat accgccttta gttgctattg
     5281 ctttagcctt tatcacaaaa gatgttattt tgtcactctt tgctggagtt ttaagtggaa
     5341 cttttctgct cagtctttct gcaaatattt ttaaagcaca acatttaact tttgtaaatt
     5401 attacaatac cgcagtagaa tctttttcaa agattatttc ttatatctta ggttcaactt
     5461 cagatccagt aaatgcagga atcattttac aaattctttg cataggtggt cttgtggcac
     5521 tcatcacaaa aatgggtggt gcaaaagctg tagcattaaa atttgccaca agagccaaat
     5581 cagctgtatc agctcaagtt aacacttggt ttttagggct tttaatattt tttgatgatt
     5641 atgctaattt actgatcgta ggtccaatta tgcgtccttt ggcagataaa tttaaaattt
     5701 ctcgtgaaaa atttgccttt attatcgact ctaccgcagc tcctgtagca ggaatagctg
     5761 taatttctac ttggataggc ttagaagttt ctttaattaa aaccgcttat gaacacatag
     5821 gcattagcga tattagtgct tttggaattt ttgtcgaaac cataccttat cgtttttata
     5881 atatcttcat gctttttttt gtagtcatga ctgcaatcat gggacgtgag tttggttcta
     5941 tgtacaaggc tgaagtgcgt gcaagaacca caggacaaat tgcacctcta cctaaatcag
     6001 gcgcactaaa tactgctgaa ttagaagatc agtttttagc gccaaaagaa ggtattaaaa
     6061 ttcgtgcttt tgatgctatt gttcctattt ttactttaat cattttagct atattaggat
     6121 tttattttaa tggacttagc actttagaag gcgaagaact tgcaaaagca agtgctaatc
     6181 ctttgtcttt tgaaactttt agggctgctt ttggaaatgc tgattcttct gtggtattat
     6241 tccaagctgc tttgtttgct gctattgtag cgatttttat cggagttcgt cgtaaaattt
     6301 tcaatcttaa agaagcggta gaaacttgga tatatggctg gaaaaccatg atttttacta
     6361 tagtcttact tttatttgct tggtcgcttt caagtatagt aaaagatcta gggacttctt
     6421 tatttatcac tagtttgctt gcagataaat tgcctgagtt tattttgcct gctactattt
     6481 ttgcttttgc ttcagctatt tcttttgcca taggaacaag ctatggaact atggggattt
     6541 taatgccttt ggctgtgcct ttagctcatg aaatcgccaa aatcaatggt atggatgcaa
     6601 atgctatgca tcattatatg gtcattaata taagctgcgt tttaacaggt gcgatttttg
     6661 gaaaccattg ctcaccaatt tcagataatg taatcctttc atccatgagt gcaaaatgcg
     6721 atcatatgga gcatgtaaga acacaaattc cttatgcttt atttatctgt ggtatttctt
     6781 taatcgctgg atatattcct gtatctttag gacttagcgt ttggtttgtc ttgcctttaa
     6841 atttcatact tattgcgctt ttactaagac tcatcggaaa gaaagttcca tgagtcttga
     6901 aaattttgga aattttctca ctttagatga aaaacactct ttcataaaaa aatattttaa
     6961 agaattttat acaaaggatt ttaaactttt tacttcaaaa gataagcatt atcgtacaag
     7021 agctgaactt tcattttacc atgaaaacga tacgcttttt tatgcaatgt ttgatccaaa
     7081 aagcaaaaaa aaatacatta tagaatattt agattttgct gatgaaaaaa tttgtgcttt
     7141 tatgccaaaa cttctagaat acttgcatca agataataaa ttaaaagaaa aactttttgg
     7201 cgtggagttt ttaaccacaa agcaagaact tagcgtaacc ttactctatc ataaaaatat
     7261 agaggatata aagtcaaatt tagaaaattt aagcaataat cttcatatca accttatagc
     7321 aagaagtaaa ggcaaaaaac ttatttttaa aacagaaaat ctaagacaaa ctttaaatat
     7381 tcaagataga aaaatatttt atgaatttaa caacgattgt tttattcagc ctaatactgc
     7441 tataaatgaa aaaatgatta cttgggtgtg tgaaatttta aatactcaaa aaagaatgga
     7501 tttacttgag ctttactgtg gatatggaaa ttttacttta gctttagcac cattcttttt
     7561 taaagttttg gccactgaaa tttcaaaaag caatattaat tttgctttaa aaaattgcga
     7621 gcttaataat acaacaaata tccactttgc aagactttca agcgaagaat taagtcttgc
     7681 tatcaaaaaa gaaagagaat tttttcgttt aaaagatatt cgattggatg attttaattt
     7741 ctctcatgtt ttagttgatc caccccgtgc aggacttgat aaaagcgtaa ttgacttaat
     7801 aaaaaaatat gaaaatatta tttatatttc ttgcaatcct atcactttaa aagaaaattt
     7861 aaaagaatta agcctaacac atagagtgga agagtttgct ctgtttgatc aatttgtcaa
     7921 tactccacat cttgaatgcg gagtatttct tagcaaggta taaaaaaata attcattaat
     7981 ttagcgagta ttactatcgc gatacaaagc acaaatacaa aagggtggat aaaagcacca
     8041 agtgggtttt tcttctttaa tataaaatga caaaataaag aaaaaacaac taaagataaa
     8101 attccaaaag ccaaaataat ttttacagca aaaagtaaat ttaaaggttt aaaatgaaaa
     8161 cctgccaaag cacctccgct taaaaaaagc aaaagaacca caaaaggcat tattttaact
     8221 ccagtagcac taaaaagact tttgtcaaaa ttaggatttt tctttttaac tacacccaaa
     8281 acaaatacat caacaaacaa ataacctata aacaaaatag cacaaagaag atggattgtt
     8341 aaagtatatg gataaaattc ttccattttt ccctccttat taaacttcgg aatttgctat
     8401 attataacac ttttttcatt ttttgaattc actttagtta attttttaat catttaagat
     8461 aaaataccaa aataaaggtt aacaatgaac gaaaaagaaa ctatctctta tattataaat
     8521 acaagtaaaa atattgccat atttgcttta agtccagata agacaaaagc ttcttata
//
LOCUS       DAPIWV010000071         8422 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.072, whole genome shotgun sequence.
ACCESSION   DAPIWV010000071 DAPIWV010000000
VERSION     DAPIWV010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8422
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.072"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            26..451
                     /gene="exbB"
                     /locus_tag="RJ272_001214"
     CDS             26..451
                     /gene="exbB"
                     /locus_tag="RJ272_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDV7382293.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            444..833
                     /gene="exbD"
                     /locus_tag="RJ272_001215"
     CDS             444..833
                     /gene="exbD"
                     /locus_tag="RJ272_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDV7382294.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            830..1515
                     /locus_tag="RJ272_001216"
                     /pseudo
     CDS             830..1515
                     /locus_tag="RJ272_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(1528..2397)
                     /locus_tag="RJ272_001217"
     CDS             complement(1528..2397)
                     /locus_tag="RJ272_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382295.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIREASGGGANAMKTIDPQKINKKDDKENNI
                     KEKGDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2401..2562)
                     /locus_tag="RJ272_001218"
     CDS             complement(2401..2562)
                     /locus_tag="RJ272_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382296.1"
                     /translation="MLKIILILSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2657..3640
                     /locus_tag="RJ272_001219"
     CDS             2657..3640
                     /locus_tag="RJ272_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HDV7382297.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3726..4814)
                     /gene="aroC"
                     /locus_tag="RJ272_001220"
     CDS             complement(3726..4814)
                     /gene="aroC"
                     /locus_tag="RJ272_001220"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDV7382298.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLCEFGICVQSGVFGIGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSYNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4814..5488)
                     /locus_tag="RJ272_001221"
     CDS             complement(4814..5488)
                     /locus_tag="RJ272_001221"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDV7382299.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5475..5915)
                     /gene="rnhA"
                     /locus_tag="RJ272_001222"
     CDS             complement(5475..5915)
                     /gene="rnhA"
                     /locus_tag="RJ272_001222"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDV7382300.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5902..6888)
                     /locus_tag="RJ272_001223"
     CDS             complement(5902..6888)
                     /locus_tag="RJ272_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382301.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFASKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKESDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6958..>8422
                     /locus_tag="RJ272_001224"
     CDS             6958..>8422
                     /locus_tag="RJ272_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDV7382302.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALEAIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDI"
BASE COUNT         3034 a         1445 c         1081 g         2862 t
ORIGIN      
        1 tataagtata tttttggaga aaaatatgga atttttaaaa gattacatcg atttaattat
       61 ctttttaatt ctaggaatta tggcatttat agctttttgg tgtgttgtag aaagaatgct
      121 attttttaga aaaattaact ttaaaaatta tgagaatcaa gagcaatttg atgatgcgat
      181 tagtgaaaat ttaaccacca tatatatcat ctattccaat gccccttata taggactttt
      241 aggcactgta ataggcatca tggttacatt ttacgaaatg ggcttggcgg gcaatataga
      301 tgtcaaatct atagtcgtgg gactttcttt agctcttaaa gctacagcct taggactttt
      361 ggttgctatt cctgctttaa tggcttataa tgccttactt agaaaagttt ctctcttaag
      421 caatgcttat aaggcaaata aaaatgctta aactaccaaa aaatgaaggt ttaaatatag
      481 tcccatttat agacattatg cttgttttgc ttgctatagt gcttagtatt tcaaccttta
      541 ttgcgcatgg aaaaattcaa atctcacttc cttcaagtga aaatgctacc aatataagca
      601 ataatgaaaa aaaacttctt ataaccatag acgaaaaaaa tactttttat ttaaatgata
      661 aattagctga tttaaatgaa gttcaaaatg ctattttttc acttgataaa aaaaccatag
      721 tagaactaaa aagcgataaa aatgctaaat ttgaaagctt tgtaaaaatt atagattttt
      781 taaaagccaa agaacatgaa aattttcaga ttcttactga gaaaaacaaa tgaaaacttt
      841 atttttaaat cataaatacc aagcttctta tataactttt atagtcttta tacctttact
      901 ttttgtcatt tttcactcaa atgacttttt taaaatggaa attaaaaatg aagattcttt
      961 ttctttagca ataaaacaat ttacccaaac taatccaaca aatgagacta aaccaacaga
     1021 atccattata gaacctatca aaccaaaacc tcagccaaaa gttattaaaa aaaaactcct
     1081 gaaaaaattc aaaaaaaggt aaaaaaaata cctccacgcc caataccaaa taaaacccca
     1141 ataacaccaa ctcaagaagt taaaactttt acaaaaacaa ctgatacaaa tgtcaaacct
     1201 aaaatcaccc aattaacaca aggaaaagat aatcaccctg tattaaaaga aattcaaaaa
     1261 gctatacaac aagcacaatt ttatccaagg caagcaaaaa aaatgcgtat gcaaggaact
     1321 gtaaaagtag aatttttatg gaaagaaaac aaaactttag cagatttaaa aatcatagaa
     1381 agctcaggat atgatttatt agataaaagt gctttagaaa gcataagaaa agcttcttta
     1441 aattttccac actataacgg agatttaaga attacactac ctattatata tgattttaaa
     1501 accctaagag gataaaatta taatttgcta cactctctta tctacaattt gtgcttcttg
     1561 attttcaatt ttattttgaa aatctttact taaattctga cttaattctt gcaaagattt
     1621 ttgcttcagt ttttcaaatt cttcaggatt gctagcctca agctttgcct gctcatcagc
     1681 acttaaagca cttaaacctt tttcttgagc tttttgaagc aaatcttcgt ctcctttttc
     1741 tttgatatta ttttccttat catctttttt attgattttt tgcggatcta tggttttcat
     1801 agcattagct ccaccacctg atgcttctct aatgtcgctt aaaatttctc tcatgctagg
     1861 ttctttaaca tcactatcat caactttacc atctttattt acatctttat caataaaaaa
     1921 atttaatttt tcttctatat ttgcatcatc agatattttt tcatcgcttg ttttaaagcc
     1981 taaattttgc atactttgtt gaagggtact tgtattaaaa tttaatttta cactttgttg
     2041 tttattattt aaatttgaat ttaaagaacc aaaattatct tttacacttt caaaccaatt
     2101 tgaaacaaat tgatttgctt cgccattaag ccttatacta ccatcatttc tagcaacata
     2161 attcatataa gaaccgaaat ttttttgtaa actactataa ttttcatcgc ttaaatttaa
     2221 agctataagt tcaccttgct tattttcaaa aacaacctta acaccatcgc tatttaaact
     2281 cgaaagatct tgcacgggaa ttttatcttg atcttctttt tttaatacgc taagctcttt
     2341 tttatcaaca ttattagtta aagaatgggt taaactagca gaagtatcga ttttcattat
     2401 ttatcctttt ttacattttg caaataaacc taaacgacac atttttctct catgtgaatt
     2461 ttttaaagaa ttacactttt taagttcttg ctcgtagtta gcacaagaat ttgcaaaagc
     2521 aaaagaactc aaaatgctta aaatcaaaat tatttttaac actttccaat ccttatttta
     2581 aagatttttt agttaaaatt atacctttta taatcgacaa aatcttaaaa aactttataa
     2641 tctcagaaag gaatcaatga aagcattagc tctttttagc ggtgggcttg atagtatgct
     2701 tgcaatgaaa ctcatcactg cacaaggcat agaagttaaa gctctaaata tcaacatagg
     2761 ttttggaagc acaagtgata aaagcgaaat catgaaaaag cgtgcagcga tggtaggtgc
     2821 ggattttgaa atgatagatg taagaaattc ctatcttcaa gaagtgcttt ttaatccaca
     2881 atatggctat ggcaaacatt ttaatccttg tatagattgt catgctttta tgtttaaaac
     2941 tgctcttgct atgttaaaag aagaaaatgc aagttttatc atcacaggag aagttttagg
     3001 acaacgccct atgagtcaaa gaagtgatgc aatggcaaag gttaaaaaac ttgctcttga
     3061 tgaagaagat ttaatcttgc gtcctatgtg tgcaaaaaac ctacctctaa ccaaacctga
     3121 aagagaaggt tgggtagata gagaaaaact cgaaggtatt agcggaagaa gtcgtaaaag
     3181 acaacttgaa cttgcagcta aatttggatt agaagacttt gaaagcccag gtggaggttg
     3241 tttgctaact cttgatagtt ttgctaaaaa aattcgagat ttcatagaat ttgacaaaga
     3301 tatgcaggtt aatgacgcac aacttttaaa atatggtcgt catttaagat tacccaatgg
     3361 agctaaaatg atcataggta gaaatgaact tgaaaatact cttttaaaag gtttaaaaac
     3421 tcctaaatat gaagtaatag aacttggaga tttaatcgga gcttactctt tggtagatga
     3481 aaaaatttca gaaaaagact tagaacttgc cttaaaaata gcccttacct atactaaaca
     3541 cgaagtagga aaaagctatg aacttaaatt taaaaatcaa gcttatacaa gtatagcttt
     3601 tgaaaataag gctgatatta atcaattttt tattagttaa agtataaagt atttagcaaa
     3661 acaagcgata tagtatttga atcttttcaa aatattgcaa tcaagcccat gaaaatgggc
     3721 tttttttatt ttaatccata agcatttttt aaattgttta aattcgcact cgcattcaaa
     3781 agcaaacaat cagccaaaac taaacgcacc atagcactag ctacaacact tcctctaaca
     3841 cctacacaag gatcatgcct acctttgagt tcaaattcca aattattgcc aaatttatct
     3901 atactttctt gcttggcaaa aatagaagga gtaggtttaa aataagtttt taaaataaga
     3961 ttttctccat ttgaaattcc tcctaaaatt cctccactat gattgcttaa aaacttgcca
     4021 tcttttaaag catcattatt atacgatccg cgcattttac ttgcattaat accttcgcct
     4081 atttcaactg ctttaacagc attaattccc attaaagcat gagctaattt agagtctaac
     4141 ttatcataaa gaacttctcc aagtcccaca agcataccac taacttttgt aaaaacagca
     4201 gcgcctacac tatcttttga atttctagca tttaaaattt catttttaaa gtcactttct
     4261 agttttggat caaggcaaaa aatttcactt ttcttagcaa attcaaaatc aaattcttct
     4321 tctttcaaat ttgatacaaa agttcctatt ccaaaaacac cactttgaac acaaatgcca
     4381 aattcacaca aaagcatcgc tgcaactgca ccaccagcca ctctagcaac actttcccta
     4441 gcgcttgatc tacccccacc cctatgatct cttatgccat atttataaaa ataagtaaaa
     4501 tccgcatgag caggacgaaa tagatctttt aaattatcat aatctttaga atgagcattt
     4561 tcattaaaaa ctactatagc tatgggatga cccgttgtat atccttcaaa aaccccgctt
     4621 aaaacctgag ctttatcgct ttcttttctt ggtgttgcaa atttacttcc gcctttgcgt
     4681 ttatcaagct cattttgcaa aaattcttca tcaaatttaa ccccagcagg cattccatca
     4741 ataatacatc caacagccac accatgagac tcaccaaaac ttgtaaattt caatctcgta
     4801 ccaaaggtat tcactataaa gctcctaatt tctcaagtgc aatttttgct gccatttgct
     4861 gtgcttcttt tttgcttccc gcaatagctc ttgcaagttc tttaccatca agcattaaag
     4921 cgatttcaaa ttgctttaaa tgatcaggac caaaagcacg cactgtttca tactgcggag
     4981 tttgtccgat ttttccctgt gtaatctctt gtaattttgt tttataatct tttataagaa
     5041 tttttgcatc aatttgaggg aaattttttt ctataagtct taaagcaata gtttttgcaa
     5101 actcaaaccc agcttctaaa tgtatagcac ctataatggc ttctaacgca tctgaaagta
     5161 tagaaggctt ttcttttcct ccattgtttt cctcagcaac actcataaaa ataaaatcac
     5221 ccaaatttaa actatttgca atttttgcaa aagacttttc attcactaaa gccgctctaa
     5281 gcttagataa atctccttcg gcatctttgg cgaatttatg aaaaaggtat tcacctacaa
     5341 ctaaatcaag cacggcatca cctaaaaatt ccaagcgttc gttgttgtaa gattttttaa
     5401 aacttttatg ggttaaagca tgtataagaa gatttttatc tttaaattca taagttaaac
     5461 tctgctctag cttttcaatg tttttcatca ttttcccttg caattttcaa agcagcttca
     5521 cgcgccaatg tatcacacct ttcattttcc aaatgtccat tatgtgcttt tacccaaaaa
     5581 gccttaatct tatgagattt tgccacttta atatattcct tccataaatc tatatttttt
     5641 ttacctttaa aatccttttt tatccatcct tctagccatt cattaatact ttgaaccatt
     5701 aggttagaat ctgtaaaaag cgaaatttca caaggctctt ttaaagcctt caaagattca
     5761 ataattgcca ttagctccat tctattgtta gtggtattag cctcagctcc aaaaccttcc
     5821 ttttgatact ccttataacg caaaatataa gcccatccgc caaaacctgg attattaaga
     5881 catgagccat ctgtataaat ttcaatgtgt ttcattgttt ttcacttcat aaataatttt
     5941 acaagtatta aactcataac aaacaggaca gtgataaaaa aacaaaggca ttacattttt
     6001 acactcagaa caacgatatg aaaattctaa ccccgcatta aaagaattat cttttaaaat
     6061 ttttaacatt ttaaagttag aatttttaaa aacaaactgg tgcgtatcat catgctttga
     6121 aattttaccc aaagcataaa agaattctaa aaaatcttga ttttctaaat taaacgcttc
     6181 attttctcta taaagcaaat cacaaatatc aaaaaaattt tgccctaaaa acatatgata
     6241 tttttcaaaa actaaacgcc ccaacatagg attatcttct attttaaatt ctaaaagttt
     6301 tttctttttt tcttcatcag taatattaaa agtacaaagt tctaaagctt tgataaaatc
     6361 actctctttt tgtacatctt cattaagctc aaaaagacat tctaaaagtt ctaaattttc
     6421 tttataagaa cgaagtttta aataaacaat ttttaaaagt tttaaggctt gtatatttct
     6481 tggacgcagt tttaaagctt gtaataaaac ttcttttgca cgctctaaaa atcctgcttt
     6541 aaaataaact tttgctaaag aaaggaaaat aaattctctt tcttgtttat ctttacattt
     6601 ttcaagagca atcaaataaa tttgagttgc tttttcaaat tccccgcttt tagtaaaaat
     6661 ttcagccaaa aaacttaaat ttccaaaact caagctacta tttcttaata actctttatg
     6721 agcgttatcc atttcaaatt tttttataaa tttttcaagc ttttgttctt catctttgct
     6781 agcaaatatt ttccaaatat aatttgcaac agctacaaca aatactaaaa tggttaaaat
     6841 tataagccct actaaagggt ctctgtattc tacaaagaaa aaatccatag tctcgctcta
     6901 aaaattttat gccaaattat agccaaatct ttgtataatt ttaacaaggt ttgtaaaatg
     6961 ataactaaag aaagtataga aaatttatcc caaagactta atattgttga tattatagaa
     7021 aattatattg aagtaaaaaa acaaggctct agttttgtgt gtatctgtcc tttccatgca
     7081 gataaaaacc cgtctatgca tatcaatcct accaaaggtt tttatcattg ttttgcttgc
     7141 aaagctggtg gagatgcttt taaatttgta atggattatg aaaaattaag ttttgccgat
     7201 gcagttgaaa aagttgcaag ccttagtaat tttactttga gttatacaaa agaaaaacaa
     7261 gaaaataaaa aagagctaaa gtctatacta ccaagcttaa atgcgtattt taaagataat
     7321 ctcaaacacc acaaagaagt tttaacctat ctttaccaga gagctttaaa tgacaaagat
     7381 atagccaaat tcgaattagg ttttgcagga gcaagtgaag atagtataag attattgcaa
     7441 aatcaaaaaa ttcctttaga agatgctatg agtgttggag ctttaaaaaa agatgaaaat
     7501 aatgaatttt acgcaagttt tatatggcgt atcacctttc caatctacga tcataaagac
     7561 ttattggtag ggtttggagg acgcacttta aatcccaatg taccggcaaa gtatgtaaat
     7621 tcaccccaaa atatactttt tgataaaagt agaatttttt atgcttttaa catcgctaaa
     7681 gaaaatatag ccaaaaaaaa agaaataata gtatgtgaag gctacatgga tgcaatagct
     7741 tttcacaaag cagggtttaa caatgctgta gcagttcttg gaacagcatt aaccgaacat
     7801 catctaccct taatccgccg ttatgatgca aaagtgattt tatgttttga caatgatgaa
     7861 gcaggattaa aagctgcgac acgatctgca tttttattaa gcacaaacaa aatagacggt
     7921 aaagtggcaa ttttgcaagg cggaaaagat cctgctgagc tcgtagcaaa aaatgaaagc
     7981 acaaaactcc ataatatact cgatgaagga atagagcttg gtgaatttta tatcagacgc
     8041 ttaatatcca ctcattccat aatttctgct cttgataaac aaaaagcttt agaagctata
     8101 caaaaattca cctttaatct tgaaccttta gtggcaaatt cttacactag tctagtttca
     8161 aatttattaa aagtggatga aaaatttatt gtcttatcac aaaattcaaa aaaaaccata
     8221 caaacccctt taatttctca aaataaatac aattttccta aagaaaaaat tcacattgca
     8281 gaattagaac ttatagcttt tttaaaacag catccagata tatgtaacga ttttaagcaa
     8341 attagtgata gtgtttgttt taaacataag attttattgg ataaaatttt agaaaaaaaa
     8401 ggttatgaag atagtgatat ta
//
LOCUS       DAPIWV010000072         8373 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.073, whole genome shotgun sequence.
ACCESSION   DAPIWV010000072 DAPIWV010000000
VERSION     DAPIWV010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8373
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.073"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            14..1288
                     /gene="cmeD"
                     /locus_tag="RJ272_001225"
     CDS             14..1288
                     /gene="cmeD"
                     /locus_tag="RJ272_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HDV7382303.1"
                     /translation="MFKKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLSSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRVLESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            1285..2025
                     /gene="cmeE"
                     /locus_tag="RJ272_001226"
     CDS             1285..2025
                     /gene="cmeE"
                     /locus_tag="RJ272_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HDV7382304.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNRAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            2028..5045
                     /gene="cmeF"
                     /locus_tag="RJ272_001227"
     CDS             2028..5045
                     /gene="cmeF"
                     /locus_tag="RJ272_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HDV7382305.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDIANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLGK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKN
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(5069..5875)
                     /locus_tag="RJ272_001228"
     CDS             complement(5069..5875)
                     /locus_tag="RJ272_001228"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7382306.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(5876..6595)
                     /locus_tag="RJ272_001229"
     CDS             complement(5876..6595)
                     /locus_tag="RJ272_001229"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HDV7382307.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(6595..6846)
                     /locus_tag="RJ272_001230"
     CDS             complement(6595..6846)
                     /locus_tag="RJ272_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382308.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(6850..8295)
                     /locus_tag="RJ272_001231"
     CDS             complement(6850..8295)
                     /locus_tag="RJ272_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HDV7382309.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
BASE COUNT         2954 a         1331 c         1199 g         2889 t
ORIGIN      
        1 ttaaaatatc aaaatgttta aaaaatattt aaaatcagct atatttttag ctctttatcc
       61 cttagcaatg ttagcttcta atttgcacga atttatagca ctaagtcaaa ataatgaatc
      121 ctatctcatt aagcaaatgc aaagcgaaca agcaaattta gacaaagaac aagcttttag
      181 aaattaccta ccctctctta gtctaagctc agcttatgta gccaacaata aagatcgctt
      241 cattatcgat ccacaagaaa gtttatttgc taaagtttct cttaattttt tgctttttga
      301 tggaggtgct agagaggcta atttaagagt tttagaaagc agagaaaaat taagcctttt
      361 agacaaagaa caaaataaaa attaccttgc cctaaatgca atcacacttt attttaacac
      421 cttaagtctt gaaaaaattt tactagccaa tcaacaaaaa gtatcttttt taaaatcaac
      481 ttttgaaaga ttgcaaaaat tttacgacgc aggacttagc cctaaagatg aacttgaaag
      541 cattaaggct aaataccatt taagcttatt agagctcagt caaaatgaat taaaacttgc
      601 caatatacaa aaagagatta aaattttaag cgatacagat tttaaagtgc aagggaatgc
      661 ttttttagaa aatccgcaac aagaaaaaag tcaaaactat gaagtaatga tagctaaaga
      721 acaaatcaat cttgctaaag aaagtgtaaa tttggcaaaa gctgaatatt ttccaaaatt
      781 ttatattcaa gataatttta acttttataa aaacaattat aatccaaaag ttccagctcc
      841 ttttgcaaat ttagcggatc aattcttaga aaaatattct caaggtaatc aatttatttt
      901 aggtatggaa tggaaaattt ttgatttcaa tgcaagggct aaagaagttg aaaaagagcg
      961 tttaaatgtt caaatagcca atgcaaatgc aagatttagc gagagaaaaa ataaagaaga
     1021 attaaattat ttagacaaaa gtttaaaagt tttacaagaa caaattttag ctcttaatct
     1081 tagcttaaat gctgcaaatt tagcttttga aagtgtagat aaaaaatacc aagcaggact
     1141 tgtttcttat gtagaatatc ttcaagcttt agaggctaaa tttaaagcac aaagcgattt
     1201 agagcttgct aaaaatgaat ttgaaattac taaagcaaat tattatttta atgcgggtat
     1261 agatcttaat tcaaaggtta aagaatgaaa aaaattctat ttttacttct tgtttttaat
     1321 tgcgcctttg gcgaagaaat ttacgcaagt ttcaatgtag aagcatcaaa acaaagcaaa
     1381 cttgcccttg aaagcatagg tttggttcaa aaaattcctg tagaaattgg acaaaaagtc
     1441 agcaaaggag aacttttact tgctcttgat caagaaagtg aaaaaatagc tcttcaaaat
     1501 gctcaaaatt cttatcaact tgcccttgta gaatacgaaa ataccaaaag taggatgcaa
     1561 aaaatcaaag ctgtagaaaa tgttatagac aaacaaagct atgaagatat gaaagctaag
     1621 tttgatgctg ctaatttaaa tttaaacaga gcaaaaatca atatagctta ttataaaaat
     1681 atcatggcaa aaaaagaatt acgcgcacct tatgatgcta ttatcgcaaa caaatttata
     1741 caagtgggcg aaggagtagg aggagtagct caacctttaa tagaaatttt ttcctatcca
     1801 caaagcaaac tgattttaag ttttgatgaa aaatataaag ataaagttag attaggcgat
     1861 gatttctttt ataaaatcga tcaaaatggt acagaattga aaggaaaaat cagccttatt
     1921 tatccaagta tagaagtaaa aacaagaaaa atttatgctg aagtgcaaac tacaaatcta
     1981 acaccagggc tttttggtga aggtagaatc atcactaaag attaaaaatg tttaaactag
     2041 ctataaaccg acctattacc gtgctaatgt ttttcttagc tcttatgatt tttgggctaa
     2101 tctctgcttt tagcatgagt gtaaatttat ttcctaatgt ttccatacct cttataaaaa
     2161 tcacaagcaa gataaatggg gatttaaatt tcgtagaatc aaaagtcact aaagaaatag
     2221 aaaatgcttt aagtgaaatc gatggagtaa agaccataac ctcagctgca tatgataatt
     2281 ttagtgtaag tgtagtcgag tttaaactgg gtaaaaatct tgaagtagct gccaatgatg
     2341 tgcgtgataa aataggaact ttaagcctac cttctaagcc tgaaattgaa aaaatcagtt
     2401 cagattctgg ttctgctatt tcactttttc tatattctaa agataaatta caactcatgc
     2461 gtgaaatcaa tgacaaaata aaaccttttt tgcaaagagt tgaaggagta ggtaaaatcg
     2521 aagctaaggg gtttttagaa ccccaaattc gcatagaatt aaaaccaaac gaacttagaa
     2581 aatacaatct taacgccctt gatatagcaa atatcatcaa aagtcaaaat tttaaacaag
     2641 ccctaggcga acttaacaac aatcaagata actatatcat caaaggctat tttgaagcca
     2701 caaatttaga agaacttagc aatcttcgca taaaaacagg agtattttta agtgatattg
     2761 ctaatatttc aagcctttat gaagatgaaa aacaaagtgc tttatacgaa ggtaaagaag
     2821 gggtgctttt agaacttgga aaaatcacaa attataacac ccttgaaatg attaaaaatg
     2881 tcaaaaatgc cttgcctatt ttagaaaaac aaattccaaa agatataagc attaatatgc
     2941 tttatgataa aagcttaaat atccacaagc acctttctca agtgattttt gatatggttt
     3001 tggggatttt tctaaccctt gttatcgtgt ttttattttt aagaaattta agtgcaactc
     3061 tcattgcttg catagctata cctacttcta tcatttcaac tttttttatt atcgatcttt
     3121 taggctatga tttaaaccgc ttaactttta tagctttaac cttaagcata ggaattttta
     3181 tcgatgatgc tatagtagtg attgaaaata ttgctaaaaa actaaaaact tatccgcctt
     3241 tacaagctgc ttttttgggt atcaatgaaa taggttttag cgttttaagc ataagtatag
     3301 ttttactttg tgtttttatc cctatttctt atatgaactc tatatcaggg ctttttttca
     3361 atgccttagg cataagcgtt gcaagtggga tagttataag ctttttggtt tctgtatttt
     3421 taatacctag tattggggca agatttttaa atccaaaaga aaacaagttt tatgaaaaaa
     3481 cagaagcttt ttttgaaaaa atagagcaaa agtatgaaaa tttactctat aaaattttac
     3541 aaaataaagt aaaatttatc ctagccactc ttgtttttat agggctttct tttgctttag
     3601 ccactcgcat agggcttgat tttttaccta tggaagatga tagtgaaatt caagttttgc
     3661 ttgaaagcaa aaaggattta agtttagaag ccatgaaaga aaaaagttta aatttgcttg
     3721 gaaaaatcaa aaatgatagc aatgtcaaat acgctttttt acttgtaggc tatgatgatg
     3781 ccaaagatgc tacaaaggct aaaatttatg ttaaacttaa aaatttagac gaaagaaatt
     3841 taagacaaag tgccatagta agtttatatc gtcaaaaatt tcaagatgaa agtttaaaaa
     3901 tcaaaatttt agaacttcca aagatagagg gtgcaggcat tgatgatccc gtgcaatttt
     3961 taatcttagg agatgattta aacactctaa aagaagctgc ttctcaggca aaagaaattt
     4021 taggcactaa tgcgcgcatt gtagatataa gcgataatgc taatgctaca aaagatgaag
     4081 tagccttaca catcaacaaa gaaaaagcca aacttttaga tgtcaatcct caatatatcg
     4141 ctggggtttt agggtattct ttctcgcaac ttagcgtagg aagcatggat agaggcaatt
     4201 caaaagatga tattatccta agttttgctc cagaatttaa aaaaaacata gaagctttaa
     4261 agcgcattag cattaaaaac aaccaaggta taaatttaga actttcaagc gtggtggatt
     4321 ttatatacag taaagattta aaaactatca atcgttacaa taaaaaccgc tctgtgaaaa
     4381 tcacagctgg agtgaatgat ctttccttag gagcggtgca aaaactttta ctagataata
     4441 tggataaaat tttaaataac aatccaagtc ttagctatgc tttttcaggc tttatcaatc
     4501 ttttaggtga aaccgtgcaa ggttttgcta tggcagtagc acttgctttt gttttaattt
     4561 atcttgtttt agccgcactt tatgaaagtt ttattctgcc tttaatcatc atgataacca
     4621 tgcctttagc ctttggcgga gcttctatag ggctttttat cacagggcat aatttttcac
     4681 tttttgtact tattgccatc atcttacttt ttggtatggt ggggaaaaat gctattttac
     4741 tcgtagatgt agctaataaa aaatgccatg aaggtttaga tcccgataaa gctcttttaa
     4801 tcgctggaaa atcacgctta agggctatat tgatgacaac ttttgctatg atttttgcta
     4861 tgctcccact tgctctttca aggggtgcgg gctatgaagc taattctcct atggcaatag
     4921 ccattatctt tggacttata agttcgactt tgcttacctt actcgtagta cctgcacttt
     4981 ttaaattttg ttttaaacta gatagcaaat taagaaaaat ttatgagaga gaaaaattaa
     5041 attaaccaaa atgattaatt taattttttt aagtattatt cttataaagt gcttttaagt
     5101 tatcataggc gatttgtatt ttttcaaact gttctcttgc gtaagctttt tctattgcac
     5161 tttttccttg atgaaaatca ggatgataaa gttttaccaa aatcaaatat ttttgtctga
     5221 tttcactaag atcattttgc ggagtgcatt ctaaagtatt aaaataatta ctaaaaagct
     5281 tagctaaagc attaaatttc catttcatat tttctttatt gtgaatattt tggcgaaatt
     5341 ttttatactc ttcgcggtca acttcaaaat tcacgcaata ttttaaatgc tcgctctcat
     5401 ctgcaaaagc ttcaaaaagt tcaagggtat tctcgttttt atattctaaa attagaatat
     5461 ttgtcatttc attatattct atattatgat cttgaaaata atttcttata taagtaataa
     5521 ataatttttc attagagctt aacttcatca aaattctacc cgcaacaaaa tcaatcttga
     5581 taaacaacat aggcttaagc atattatttt gctcaaaaat taatctaaaa gttttaaaat
     5641 gagcatcttg taaattctct ataccttcat ttgtgctttt acgatatttt tgatctaaaa
     5701 cttttaagaa ataacggcgc tgtggaattt cattttcttc aaaaaaagaa aaaattttat
     5761 tttttcgtcc tataaccttt gtgaaatttt tggtaatcaa gtctttaaaa tactgaaata
     5821 cgctaatatc atctgtatta acattgatag tttctaaagt ttgcacgatt tgcatctatt
     5881 tctcccataa aacctcattt tcaaaaagct ctttagtgcc ttttaaaatt tcattgggtg
     5941 tataatcggc tttataagat aaagattgac acttttttac aaaataccca agataaatat
     6001 aatctaagtt cattttttta gctatttgta tttcattgag caaagaaaat ttacccaaag
     6061 aaaaatacga aaaatcagga tcataaaaac aataaatgct tgaaattcca tcctctaaaa
     6121 tatcaatcaa atcaacacaa acgagcttat cttctatata aaatgcaagc tcatatccaa
     6181 aattcataaa accatcgaca taaagattat aatactgttt aaagcttaaa tcataacgct
     6241 tccagttctt tttttcttcc ataaaacgat ggtatttatc atataaaaac aaatgttcat
     6301 tgcttaaatt gggcgttcta agtataactt tggtgttaat atttttattt acaacccttc
     6361 tttcacttct tgaaaaatta tattcattaa ctaaaattct aagacttaaa cattcatcac
     6421 aatctttaca aatagggcgt gaaaaatacc taccaaaacg acgccaacct cgttttatta
     6481 gctcattatt gatttcttta gggcaatttt caatgtattt atactctatt cttgaacgtt
     6541 tatcctttaa gtaaggacac tgatcttcaa gagtacaaaa accaatctca agcattaaat
     6601 tttcttaata tctgtatttt tgataaattc ggaaaattca tcctgtagtt tttcttgctt
     6661 taagaaaatt tcttgcattt ccttatctat gtttgtttct tgattttttt cgcgaatatc
     6721 tttagctagt ttttctaaat tttttacact tgcaccactc ttgcttgatt tcttcgctaa
     6781 ttttgaagta ttggtgttag cttgcatttc ttttttaata cttttaagac tgtctaaaaa
     6841 atccatctat tattccctac tttctcgtat ttttttaagc gtagcagcta ttgcagctat
     6901 aacttcttct ttattttctt gatgacgatc ttctgttttt tctaataatt cttgcatatg
     6961 tgtttctatg aaagaggtgt ctaaataccc ccttctaaat tctcttgttt ttgtaatggc
     7021 aattaaaaat ggtattgttg ttctaatatc atcaatcaca aattccttca aagcacgctc
     7081 aagtttatta accgctaaat cataacttgt tgctttaata ataagctttg caagcatgga
     7141 atcataataa ggcggcacag tatagtcttt ataaatatga ctatcaaccc taacagatgg
     7201 tccaagagct gggtagtatt ctcctatttt tccaggactt ggaataaaat ttttccatac
     7261 attttcagca gtaattctag cttcaatagc aaaaccccta ggtttaatat cgctttgttc
     7321 taagtccaaa atttctcctg ctgcaatacg aatttgtctt acaataagat caatacctgt
     7381 aatttcttca gtaattggat gctcaacttg aattcttgta ttcatttcca taaaataaaa
     7441 gcgattataa tcatcaagca aaaactctat agttccagca tttgtataac ctacagcctt
     7501 agcagctgcc acagctgtaa cacccatggt ttttctaaga ttatctgaaa ttccagggca
     7561 aggtgctatc tcaattacct tttgatgtct tctttgaata gaacaatccc tttcacaaag
     7621 atggataata tttccgtagt tatctcctaa aatttgaaat tctatatgtc tgggattaac
     7681 tacatatttt tccataaata cttcatcatt attaaagtat gttaaagctt ctcttttgca
     7741 agattcaaag gcattttcaa gatcttgttc tttatgaaca acgcgaattc cgcgtccacc
     7801 tccaccacct gaagctttta aaataacagg ataaccaatc ttctcagcaa aaattttaat
     7861 ttcttccatg ctataggaat ttaatttttc agtccctgga acaataggta tgccattttt
     7921 agccattaac ttacgagcga tatttttatt tcccatctta tggattactt cagattttgg
     7981 acctataaaa ataattccag catcttcaca agccttagca aattcgtaat tctcacttaa
     8041 aaatccataa ccaggatgga tcgcatcagc accacaagcc ttagcaatct cgacaatacg
     8101 agcaacatct aaatatcctc ttatagcatc cgttcctatg cgataagcct catctgcgat
     8161 ttttacatgc aaacattcac gatcaggctc tgtaaaaact gcaacacttt taatatgtaa
     8221 atctctacaa gcacggatta ctctaacagc tatttcagct ctatttgcta tgagaatttt
     8281 atggatttga ttcataattt gccttttttg ttatattttt attgttaatt ttagcaaatt
     8341 ttccttacaa aaacttagca aaaaatttaa ttt
//
LOCUS       DAPIWV010000073         8286 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.074, whole genome shotgun sequence.
ACCESSION   DAPIWV010000073 DAPIWV010000000
VERSION     DAPIWV010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8286
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.074"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1482)
                     /locus_tag="RJ272_001232"
     rRNA            complement(<1..1482)
                     /locus_tag="RJ272_001232"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(1986..3664)
                     /locus_tag="RJ272_001233"
                     /pseudo
     CDS             complement(1986..3664)
                     /locus_tag="RJ272_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(3674..4711)
                     /locus_tag="RJ272_001234"
                     /pseudo
     CDS             complement(3674..4711)
                     /locus_tag="RJ272_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4716..6311)
                     /locus_tag="RJ272_001235"
                     /pseudo
     CDS             complement(4716..6311)
                     /locus_tag="RJ272_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873680.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(6323..8251)
                     /locus_tag="RJ272_001236"
     CDS             complement(6323..8251)
                     /locus_tag="RJ272_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382310.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINTKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
BASE COUNT         2542 a         1579 c         1113 g         3052 t
ORIGIN      
        1 cggttacctt gttacgactt caccccagtc gctgattcca ctgtggacgg taactagttt
       61 agtattccgg cttcgagtga aatcaactcc catggtgtga cgggcggtga gtacaagacc
      121 cgggaacgta ttcaccgtag catggctgat ctacgattac tagcgattcc ggcttcatgc
      181 tctcgagttg cagagaacaa tccgaactgg gacatatttt atagatttgc tccacctcgc
      241 ggtattgcgt ctcattgtat atgccattgt agcacgtgtg tcgccctggg cataagggcc
      301 atgatgactt gacgtcgtcc acaccttcct cctccttacg aaggcagtct atttagagtg
      361 ctcggccgaa ccgttagcaa ctaaatacgt gggttgcgct cgttgcggga cttaacccaa
      421 catctcacga cacgagctga cgacagccgt gcagcacctg tctctaagtt ctagcaagct
      481 agcaccctct tatctctaaa aggttcttag gatatcaagc ccaggtaagg ttcttcgcgt
      541 atcttcgaat taaaccacat gctccaccgc ttgtgcgggt ccccgtctat tcctttgagt
      601 tttaatcttg cgaccgtact ccccaggcgg tacacttaat gcgttagctg cattactgag
      661 atgactagca ccccaacaac tagtgtacat cgtttagggc gtggactacc agggtatcta
      721 atcctgtttg ctccccacgc tttcgcgcct tagcgtcagt tgagttccag cagatcgcct
      781 tcgcaatggg tattcttggt gatatctacg gattttaccc ctacaccacc aattccatct
      841 gcctctccct cactctagac tatcagtttc ccaagcagtt taatggttaa gccattagat
      901 ttcacaagag acttgataat ccgcctacgc gccctttacg cccagtgatt ccgagtaacg
      961 cttgcaccct ccgtattacc gcggctgctg gcacggagtt agccggtgct tattccttag
     1021 gtaccgtcag aattcttccc taagaaaagg agtttacgct ccgaaaagtg tcatcctcca
     1081 cgcggcgttg ctgcgtcagg gtttccccca ttgcgcaata ttccctactg ctgcctcccg
     1141 taggagtctg gaccgtgtct cagttccagt gtgactgatc atcctctcag accagttaag
     1201 cgtcatagcc ttggtaagcc attaccttac caactagctg atactatata gtctcatcct
     1261 acaccgaaaa actttcccta ctcaacttgt gttaagcagg agtatagagt attagcagtc
     1321 gtttccaact gttgtcctct tgtgtagggc agattaacta taccttactc acccgtgcgc
     1381 cactaatcca cttctagcaa gctagaagct tcatcgttcg acttgcatgt attaggcacg
     1441 ccgccagcgt tcactctgag ccaggatcaa actctccata aaaaattata gatagtttaa
     1501 tctttttctt caaagaaaaa gttatgaaag attaaaagaa aagtttttaa tctttttaat
     1561 tattagattg aatagatttt acataattgc ttatgcctaa atctgttctg gctcaatcga
     1621 tcacttattt agatttcaaa gattgactaa taagatttga ataacaatac taatttaaaa
     1681 gaacaaaaca aaaaatcatt tttaaaagaa aagtttttaa attaaaaaac aagatttata
     1741 aaaaagcttt tagtttataa gacaaaaacc aaaagagtta atttataaaa tctactaagc
     1801 tagtgaaact ttataattta aaagatttta agtccttttt tcaaaaaagg aaatgaaagt
     1861 ataaccaatt aaacttaaaa gtgtattaaa caaaggatta aatagtataa atatttgtgt
     1921 aagtatttat ataagtattt ggtgggttta aaaatggggg gggggaattt ccaatcaccc
     1981 caaagttaaa agtattttcc taggcttgca taaactcttg ctcgatgttc tccatcgtgt
     2041 ttaagccgat aaacagctct tgcagcatcc atttttacat aaaaattagc acttcttgta
     2101 tagagtattt gtatacccat tgcatccata agataatgat tttcactttg atatttttta
     2161 ttttcatacc aagaataccc tatatcataa aaaggagtcg agtaaagccc ttctaaaggt
     2221 gtttgaaatc ttattcccaa ggtgccagaa acaacattat ccgcacttcc ctcaccttcc
     2281 aaacaaacac atacaccaca aggtctacct aaagatacgg attcactact atctaaaaca
     2341 gtatcgctga taactttttg ataattgagt tgaaaaatgt gagttaagcg ttcttagaat
     2401 tgatatttgt tgcttaaatt taaattcatt tttccaaaat ttcctaaatt tactccatta
     2461 aatccagaaa aatcaccatc attttcaaca ttaccatata taaaatttaa agtataactt
     2521 aggacattat tctccaaacc tctataagtt ctttctatgc ccaaatttac actatttctc
     2581 gctttttcat tgcttactaa accatcaaga taataatctt taatcttttt atgagtaaaa
     2641 cccgaaacaa gatataaaga atactcagta tataaaaaca caggataaga aaaatttact
     2701 ccaacattca tagagtccct ataaaaacta agatttctat aaattctgcc aggaatataa
     2761 tgtccttgag ttgcaaatgg agtaattttt aaattcccta taaaagtact ataattaatc
     2821 ccataatctg tttgattttt atcactatct tgaagataaa aatttaagtt atccccttat
     2881 cttgctatat tgtttaaact ttgactcatt cctgctctaa aacgacctgt ttctttagtc
     2941 ccatagttgt tagaatataa agttaaagtt gcactatctc acctttcttt acttctataa
     3001 taacatcact ttctccacaa ccatcacctg attgtaaatt agcattggtt tggattccgt
     3061 atatttcatt gattttataa atttcatttt ccacattttt agttgtgata actttccctt
     3121 taagattttt gttcaattta ctctctaaag cataatctct gacacctgag ttgtttttaa
     3181 tgattacttt tcctaaaagt tccaaaagct atgttaattt gcactttgtt agaacttaaa
     3241 tcttgcggtg gtatataagc agttgccgaa ggatgactac ttaattgaca ataataagct
     3301 ataatgtttg ttatatcttt taaattttgt aagcttaatt cttggttgcg atattcagct
     3361 attgcatctt gaatttattt ttcgctaatt cttaattttt taaatgtcaa atctttatta
     3421 tcgatatgca aaacatactc tcttacaaaa accttagctt cattttgatc agtttgtaaa
     3481 tttgcaatat ttgtagtatt ttgctcttta aaatttacag ggcttttttg attttttaat
     3541 gtatttttta atttttattt tgtggtccat ttgcttcaga agagctttct ataagctctc
     3601 ttattttatt attatttagc tcttcagcat gtgaaaatac ttgcaataag attaaatttc
     3661 tcatttttat ttcctatttt acatttacac aaatgttcat tgtcttaaaa ttatcactta
     3721 caatacaacg caaaccacta cttctagcat ctgcttttcc tatgtccact tgatcatcat
     3781 cttctttttt tgtgtctact ttagtttgaa tttttatagg agcttctaca accttttcag
     3841 gaatttcagg cggcaataca gaaggtttgt ctggatcttc accccctccc tctttttttg
     3901 tttatctggc tcatagatag atatatttga tttttctggc aatgaggcta attttccttc
     3961 gaaattatat tttccagtgt acactttacc atctacatcg cttccattta tagcaaaacc
     4021 ttgagaattt agaatctcat tttcaagctt atagtgaaat ccttcatttc cactaagatc
     4081 cgcaaactgc ttttcaagag cttctttttg ttctaaaagt tttgcataca taactctaag
     4141 cgtttcatcg ctaactaagc ctgattcttt gattttttca tagtttttat tttctttgtc
     4201 aagttgagct aaggcttctt ggtatttttg taattcttct ttaaaactag cgaaacaacc
     4261 tttgccggtt ttgattttat ccatagcagt tttcttttgc gtccattttt cataaagatt
     4321 ggtataattt ttataacttt gttcttgcga accttgccat aactttaaaa attcttgttc
     4381 tactccagta tctttaaatg tatttaagaa atttaaactt tgagtgatct cactggcttc
     4441 attttcccct gccacaccct tgctatctgc gtaaatccaa gttttggtat caaaaccata
     4501 agtgtatttt ccattcatca aatcatctaa aattctttga agcaatttag ggtcaaagtc
     4561 gtctttggat aatttcacag catctgttac cttggtaaaa gaatcagcaa aagcataaga
     4621 attattatca agatatttta tatcgttaaa tttctttctt acagcactat caaaatcttt
     4681 tttttcctgt tacttcacta ttatattgca cagacttaaa aaaaattctg tccttcatca
     4741 atgtaaccat tttctaaatt atgataaaca taaatattac taaaattatt atttacacta
     4801 attccaggat caccaataac ttttccagct tgtgttttat aatttccagc actcaaaatt
     4861 gctccatttt tataaaataa gtaagcatta ttaatcttta aatttccaac ttttccagta
     4921 aatcctcctg ttttactatc attcccagaa gttataagtt tttctatgtc attaaccaca
     4981 acattattaa aattaccacc atcaatttgt ctgcctatgc cacccacata agaaccttct
     5041 tttgttacta tacttatatt attaataaca acatttgtaa aattgatagt gttattccct
     5101 ccactaccat ttccccagcc tattattccg ccaactttag tatttacagc tgtattaata
     5161 acgagatcat taacagtcac attttcaaaa cccgtataac tgtttgcaat attttgccct
     5221 actatacctc caacataagc atcataacca gttgaagcaa ttttcaatcc ttgaatatta
     5281 aggtttctta tatagctatt ttgaacaact ccaaaaattc ctacatattg atttgatgaa
     5341 ttaatattaa cattttttaa agcataacca gaaccatcga aagatttagc aaaagcattg
     5401 cttgtattat cacctactat gtatgttttc acgccactaa aatcaatatc atcaatcaaa
     5461 cgaaaatgat caaaagctgt tctaaatttt tctttattta cattccaaaa atcagcaaat
     5521 ttattccatt ctgttggatc cgcaatactt ccatatttag tccagttttt aactttacta
     5581 ctatcatcaa aactaaattt actactagaa ttacccaata aagctccatt ttcttcaaaa
     5641 cttgttatgc tttgttgaat gatagcttct tgctctgctt tggctacgat attttttgta
     5701 tcttttacca ctccagcatc aacataaact ttgttacctt caagttttaa tacatccaaa
     5761 gtaatttttc ctttattgat ttcaacctta tttcctatta aaacaatatt atctgcattg
     5821 atctttccaa gatttataat atttccttgc ttgcttacat caaatactgg agaaaaattc
     5881 atcccttgag aaataaaatt ttggacatct gaatctttta aaggtgttgt gctagctaca
     5941 aattttcccg cagtgatagt tcctgttttg ccaatcaaaa ctcccatggg attaactaaa
     6001 aagatgttat tggtgccgcc atctagtttt ccatctatct tagaagcatc tttttgataa
     6061 gcaatgttta ggtagtttta ttgatttccg ttaaatttta cagtttcatt ttgtcctata
     6121 ttaaaaccac caccccattg aataacagag tttttattgt ttcctatgac attcatcgtg
     6181 ccattgcttg aacttatact tcctgttgaa ccatgagtga atttacctcc ttgtggcaaa
     6241 gcataagctt gagaaaagag caaagaactc accgcaaatg ataaaactat atgtttactc
     6301 atctttttca tgttactctc ctttaaagta tgttgatata aattattttt gcatcatctg
     6361 aaacttcaaa gctaaaattt acatttttca atgtactttt agccaacttt tctatcttgt
     6421 tgtaattaaa tttattttta ttatttttca ttttttctaa caaattttct aattcttgtt
     6481 gatttaacaa tctattgtca ccatcataaa ttccaacatc actttgtatg agaatatatt
     6541 ttccttttgt tggtttattt ttagtaagaa tttccatact tccatttgaa ggaagattta
     6601 taagtttttc tatagtcaag ataggatttt ttattttatt tggtaaaata aaagtaaaat
     6661 tttcaaagtt atttaccact tctgatttga catcttgagt atctataatc aaacgattat
     6721 ttttagaaaa atcttcttga tgcggtagaa tttgagtgat tattttgcct tttttattta
     6781 cttcatgaaa aacagaacca gaaagcaaat cgatatttac atctttaaag aaatttaact
     6841 ctccacctaa atataaagta ttgttataag atttaaaatt tgaaatatcc gaagttccag
     6901 atggagctaa aaatatagca tcttgatttt tatactcatc tatatttaaa ttaacaagct
     6961 ccatgatatt atcatgagaa tttgcagaca ctccagctat caaccccaca taaccttgtc
     7021 ttttatctga ggcagtacta aaaactgtgt tgttgatgat gattttatta aaagcacttt
     7081 ctttgtctgc ttttatgatg cacgaacttt ccacggcagc cgaagaacaa tctttaagct
     7141 ttataagatt gttgtttgca ttttgagttg cttttaaaat aatttttgag ccctttccta
     7201 aagaactcgc ttcggttaaa ctctgaatga gattataatt tattttatta tttgaaacat
     7261 ttttagtatt gatcatcaaa cttaaatttt tagatgattt aatattttca aaatttactt
     7321 cattattgtt tgattcatca gcgatatagt ctataccatc tagcgtagtt tcacttgtaa
     7381 taaaagcata taaaggcaat gaaataacag aatcttttat acttaaggta ttattatttg
     7441 cttttccact taaagttcta gctgcatata cagtaaattt atcagaataa ttttgtggaa
     7501 ctttttcata ggttaaatca ttttgtatat caataatatt aaaattcgca ccctccgtag
     7561 caaaacctcc gtaaagattg taataatttt ttccataaaa attatcactg atttttaaag
     7621 gttttttaag acgaaataca attttatttc cattagcttc accatcgtta gaatacccac
     7681 catagaggtt taacgatgca tgtgttttaa tgtttttatc aagatgatct aatgagttaa
     7741 aatgataaac ttctatagaa tttttctctg cattaccctg taatgttctt ccgccataaa
     7801 tttctccaaa taaaacagca tcataaaaag ttattttatt ttgcgaattt accattaaat
     7861 ctaaatttaa atttttaatt attacggaat ttttacttac attgtatttt ttaagattat
     7921 ttacatcagc taaagcacct aaaatttcaa aggtcgaacg agctgtatac tcaccatctg
     7981 gcccatgaag gacgatattg gctgaatcga taagaacttt attgttttgt aaattagaat
     8041 ttatgccaaa agctcccatt aaacgagtaa ttctttcatc ataaatatcc ttaccttctt
     8101 catctgaaaa atactgggaa ttatgaaggt caatttttgt atttgactct aagattaatt
     8161 tattgtcttt agcttcacca tcaaaagcta cagatcctga aatataagga gctccattta
     8221 agggcaaggt gtagatattt tctacaccca ttattaatat aggagttttc ttttaaaatg
     8281 gtttga
//
LOCUS       DAPIWV010000074         8092 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.075, whole genome shotgun sequence.
ACCESSION   DAPIWV010000074 DAPIWV010000000
VERSION     DAPIWV010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8092
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.075"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            41..1336
                     /locus_tag="RJ272_001237"
     CDS             41..1336
                     /locus_tag="RJ272_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382311.1"
                     /translation="MRKSKFETKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGVFMGYLVDKFGLFKICIFFSLAFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNDNPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
     gene            1386..3017
                     /locus_tag="RJ272_001238"
     CDS             1386..3017
                     /locus_tag="RJ272_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HDV7382312.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLVLVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(3037..3459)
                     /gene="cgb"
                     /locus_tag="RJ272_001239"
     CDS             complement(3037..3459)
                     /gene="cgb"
                     /locus_tag="RJ272_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HDV7382313.1"
                     /translation="MTKEQIQIIKDCVPILQKNGVDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(3526..3984)
                     /locus_tag="RJ272_001240"
     CDS             complement(3526..3984)
                     /locus_tag="RJ272_001240"
                     /inference="COORDINATES: protein motif:HMM:NF014651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDV7382314.1"
                     /translation="MVFKNNSKLQYTALKLLSSSNEDDKLIASDFTSLFLSDVDYVKA
                     PPFASFYLDENKEIYSDNSDKIKQIFVQNNFFSFFNKEPADSLINELLFISFLIKKQD
                     DIILQKFLKEEFFTWFNMWSFDVINKAKTHFYKALTMLMQDFFNQLNTKF"
     gene            complement(4081..4407)
                     /locus_tag="RJ272_001241"
     CDS             complement(4081..4407)
                     /locus_tag="RJ272_001241"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382315.1"
                     /translation="MSFFTGLIGIGLLNTAIVLQTLHVGQTWIMGLVNPFELLGGTYD
                     WFISLSFAFLGLGTVTWYLHNYLHEKFKSKFFAYFALLCAFLGVFTTRMLFYGLISTQ
                     IMLGHS"
     gene            complement(4459..4788)
                     /locus_tag="RJ272_001242"
     CDS             complement(4459..4788)
                     /locus_tag="RJ272_001242"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382316.1"
                     /translation="MMVAFIPSFFHLNDITHIFNVLNRMGVFYANNEWHIGWMNNEIL
                     FVSLVCALGFLLYLKTSNWVFYLTLICGILGLFFMSGAYMAPCKKVCLLGILRSLCFI
                     FLLVLYF"
     gene            complement(4785..4949)
                     /locus_tag="RJ272_001243"
     CDS             complement(4785..4949)
                     /locus_tag="RJ272_001243"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382317.1"
                     /translation="MTSFNHILSEMPLVLFTILAQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALELQ"
     gene            complement(4936..5592)
                     /gene="dmsB"
                     /locus_tag="RJ272_001244"
     CDS             complement(4936..5592)
                     /gene="dmsB"
                     /locus_tag="RJ272_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HDV7382318.1"
                     /translation="MKLEENSQFGVMLDQSKCVGCRTCSLSCKDYKNMPVGVNFRRVF
                     ETEGGNWTCKEDGSFEQNVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRALKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSAIFHLPQNYQGVKNDII
                     "
     gene            complement(5603..7924)
                     /locus_tag="RJ272_001245"
                     /pseudo
     CDS             complement(5603..7924)
                     /locus_tag="RJ272_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009883064.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
BASE COUNT         2584 a         1229 c         1245 g         3034 t
ORIGIN      
        1 taataaaaac aatgttttta aaatttaagg taattaatca atgagaaaat caaaatttga
       61 aacaaaggaa attaagatct taggactttc ttcactagga ggaactttag aattttatga
      121 ttttattatt tttgtctttt ttgctgaata tatagctaat gtattttttc ctaaagatat
      181 gagtgaattt tgggctttat taaatactta tggagcattt gcagctggat atttagcacg
      241 tcctttaggt ggtatagtta tggcacattt tggagataaa tttgggcgta aaaatatgtt
      301 tatgctaagt attttactaa tggttcttcc tacctttgtc ttagctttta ttccaggtta
      361 tgaaactctt gggtttttag ctcctgtttt attgatactt ataagaattt ttcaaggcat
      421 agctataggt ggagaattgc ctggagcttg ggtttttgta agagagtatt gtcaagaaaa
      481 acaaaaagct ttctttttaa gctgtttaaa ttcagctatg gctttaggaa ttttgttagg
      541 aagtatagta tttctaatca ttaatgcttt ttttagcata gaagaaattg ctgcttatgc
      601 atggcgtatt gctttttttg taggtggaat ttttgggatt atttctattt atttgcgtag
      661 atttttgcaa gaaactcctg tttttaaaca aatgaaaaaa gaatcatcgc ttagttcttt
      721 tccacttaaa gatttattta aagaaaagga tattgtaaaa aatttatttt catcaatgat
      781 gatgacttgg gttttaacag gttgtgttat tgtgcttgtt ttattaatgc ctaaatttat
      841 gcccagtatt ttaaatttaa gtggagttga aggaagttat ttacagatat taggaatttt
      901 gggaatagct ttaggcgggg tttttatggg ttatcttgta gataaatttg gtttatttaa
      961 aatttgcatt ttcttttctt tagcttttgt atttttttct tttttatatt tttatgcttt
     1021 atatgagctt aaaaatttgg ttttggtgtg tattttgtat tcgattgttt gttttttagg
     1081 tggaattaat gtgttcgcac ctattttaat gagtgaagtt tttagagcta aaataagatt
     1141 ttcaggaatt tctttttctt ataatattgc ttatgcaatt tcaggcggta ttactccgca
     1201 actcgttttt tggcttaata cacttgcgag taaaaatgac aatccatttt tatatggtat
     1261 gagtatatat atgatttttt tagcgttatt ggctatttgt gctgttttta tagtaaaaga
     1321 taaaataaaa ttttgataat cactcttaaa atgttataat taaaattata ttttggagtt
     1381 tataaatgcc ttttattatg gaattactta agcaaaataa attaaagttg atttcttttt
     1441 tgcttttttc ttttattaca agcgctgttg gagttttaac tcttgttttt atcaatgatt
     1501 atttgcttaa aaatgcacaa aacattccta ttttttattt tattgttttg cttttgattt
     1561 tttttataag ttctaccata gttgaacttg gacttagtat ttttggacaa aattttattt
     1621 ttaaaatgca aaggcgcgta gtaaagcaga tcttagacac ccctttgtta agagtcgcta
     1681 aagtaggtaa ggctagaatt ttagcttctt tgggaagtga tgtgagaaat atatcttttg
     1741 ggcttttaag attgcctgat tttttacaat caagtatatt gattttatgc actagtgttt
     1801 atttatgtta tctttcacca caaatttttg ctttgtgtgt ggtatggatt atggttattt
     1861 ttattactaa taattttttg atgatgaaag tatatcagta ttttagaaag gcaagggaaa
     1921 atgatgatgc tttgcaaaat aattaccaaa atatactaga tggacataaa gaacttttga
     1981 tcaatcgtga tagagctaag ctttattatg aagatgaatt tgaaaataat gcaagattga
     2041 aaaagaaaaa tagtacttta ggtaatcttt ttaacaatct ctcaaacaac tggacaaatg
     2101 taactctttt ggttttagtg ggtgtagagt tttacttagc tttaaaattt gaatgggcaa
     2161 gtgttgcaga tgctacaact atagctcttt ctattttgtt tttacgaacc cctttagtat
     2221 ctatgatagg atcttttcct actttgcttt tggcaaaaat cgctttggat aagatcgcaa
     2281 aattggaatt agatgattat atagaaggtt ttaaaaaaac acattatatc agtgaatgga
     2341 aaaaaatttc ttttagaaat actcaatttg cttatgaaga aaattttcat ttaaatcctg
     2401 taaatataga acttaaaaaa ggtgaattgg tatttttaat aggtaaaaat ggaagtggta
     2461 aatccacttt ttgtatgctt ttgacaggac tttttaagcc aagcaaaggc ggaatttatg
     2521 ttgatgatac gcttatagat gataaaaatt tagatgagta tagatctctt atttctgctg
     2581 tttttagcga ttttcatctt tttactaaaa ccttaaataa agaaaatttt gcaagcgaag
     2641 aaaaaattgc tttttggttg gagtttttag aacttaaaga taaaacaagt gtcaaagata
     2701 atgaactgac cttaaccaaa ctttctacag ggcaaaaaaa gcgtttagct atgcttatag
     2761 ccttgcttga agaaagggat attttagtgc ttgatgaatg ggcggctgat caagatcctg
     2821 tttttagaag atttttttat aaaaaacttt tacctttgct aaaagagcaa ggtaaaacaa
     2881 tctttgctat cacacatgat gatgcatatt ttgatagtgc tgatagaatt ttcttggctc
     2941 aaaatggtga aatcagcgaa ttaaagggtg agaatataaa ggaattagct aaaaatttag
     3001 tagaaaaatt tgattaaagc ccaaaatggg cttatattat ttatcataga gctttttttc
     3061 tatattgata taaaattcag caatttttcc ataagcaact tcccaagctt taagagtagc
     3121 ttcgtcagga tttaaaagat ttttaatagc ttttaaaagg caagctccaa ctataggata
     3181 atgctcttct ttaaccccta aattaacatg agttatggca actttatcaa caaagtttct
     3241 catattttct aaattttcta tatttttagc tgccattaaa atcgccatcg ctaaagcttt
     3301 tggttgttct cctgaaattt gtttttccat attaaacata ggttttacct caggataatc
     3361 attaaacatt attttataaa actcattggt taaatctact ccattttttt gcaaaatagg
     3421 cacacaatct ttgatgattt gtatttgttc ttttgtcata atttctcctt tttaatgtaa
     3481 aagagatatt atatatctta aaaaggagaa aaaaattgac ttgtgttaaa attttgtatt
     3541 tagttgattg aaaaagtctt gcattaacat tgttaatgct ttataaaaat gtgttttagc
     3601 tttattgata acatcaaaac tccacatgtt aaaccaagta aaaaattctt cttttaagaa
     3661 tttttgcaaa attatatcat cttgtttttt gattaaaaaa ctaataaata ataattcatt
     3721 tatcaagcta tctgcaggtt ctttattaaa aaaagaaaaa aagttatttt gcacaaaaat
     3781 ttgcttaatt ttatcagaat tatctgaata aatttcttta ttttcatcaa gataaaaaga
     3841 agcaaaaggc ggtgctttta cataatcaac atcgcttaaa aacaaagatg taaaatcact
     3901 tgctattaat ttatcatctt cgtttgaaga tgataaaagc tttaaagcgg tgtattgcaa
     3961 tttgctatta tttttaaaaa ccaattttgc cagaattctt cttttttaag tttttctagc
     4021 aaaaaatgat taggtggatt ttgcaaaaat tgataaatat atctattgcc aatttttgca
     4081 ttaagaatgt cccaacatga tttgagtact tataagtcca taaaatagca ttctggtggt
     4141 aaatacccct aaaaatgcac aaagtagggc aaaataagca aaaaatttac ttttaaattt
     4201 ttcatgtaaa taattatgca aataccaagt aacagtccca agtcctaaga atgcaaaaga
     4261 aagcgatata aaccaatcat aggttccacc taaaagttca aaagggttta caagccccat
     4321 aatccaagtt tgtcctacat gtagggtttg caaaactata gcagtgttta aaagccctat
     4381 acctataagt cctgtaaaaa acgacatttt tctttcatgt ttgctatttt caaaaaaaac
     4441 aataataaac aatagcgcct aaaaatatag cactagcaaa aaaataaagc aaagtgatct
     4501 taaaatccca agtaggcaca ctttcttgca tggagccata taagctccac tcataaagaa
     4561 aagtcctaaa attccacata ttagcgtaag ataaaacacc caatttgaag tttttagata
     4621 aagcaaaaag cccaaagcac acacaagaga tacaaataaa atttcattat tcatccagcc
     4681 tatgtgccac tcattgtttg cataaaaaac acccattcta tttaatacat taaaaatgtg
     4741 tgtaatatca tttaaatgaa aaaatgaagg gataaaagca accatcattg caattctaag
     4801 gctaatccaa aagactttaa atttgcataa tttttgtaac catttataaa tgcaggtgca
     4861 taaaccaaac taagtccaat tacagcttgt gctaaaatag taaataacac caaaggcatt
     4921 tcgcttaaaa tgtgattaaa tgatgtcatt tttaactcct tggtagtttt gaggtagatg
     4981 aaaaatcgca cttttattac ctgaaggcaa actatgtttt tcaggcacta tacataaatt
     5041 cggatgcgtg atagaagcat caggtaaagg tgtgatagag gctaaatttc catgttcttc
     5101 tctcagtttt gttatatcgc ctgcttttaa tgctctaaaa ggacaagagt ccacgcaaat
     5161 tggattttta ccttctttta atctctcata acacccatcg catttgctca tatgaccact
     5221 ttcatggtta aattgaggtg cgccataagg acatgccata gcacaagctt tgcagcctat
     5281 acacatacta tcatcgattg ctactattcc ccattttatt ttcattgttg caccagttgg
     5341 acaagcttta agacaagatg gattagaaca atgattgcaa gaaatagaag tgtagtaagc
     5401 aaaaacattt tgctcaaaac ttccatcttc tttacaggtc caatttcccc cttcagtctc
     5461 aaacacacgg cgaaaattaa ctcccacagg catgttttta taatccttgc aagaaagtga
     5521 gcaagtccta cagcctacgc atttgctttg atctagcata acaccaaatt gtgaattttc
     5581 ttctaatttc atctttttct ccttaaactt ttgcaatttc aactaaaata gaatgttgtc
     5641 catttccttt agaaatagca gttggtacta tacttgccaa agaattcaca caagttccca
     5701 catcgatacc attttcatat tttgcccatg caccttgtgg ggttactgca caacctggta
     5761 tgatttttgg agtaattttt gctatgcctt gtatgattcc taagtcattt cttacttgca
     5821 ccacatcgcc cgttttgata cttctttgct ctgcatctat ggtatttatc caaatttctt
     5881 gtggattagc ttctctaatt tgtggaattt cccaaaagct agaatgcgtt ctacctttgt
     5941 agtgatagcc aaaaaattgc aaaggatact tttgttttaa tggatctaaa atcccttctc
     6001 tttggctttc aaaaacagga ataggtacta tttgttgtcc ttcttttaat ttccaagttt
     6061 tttgcatttg tgcgagtttt gtgctataaa tttctatctt tccgctagga gtttttaaag
     6121 gattattgat aggatctttt ataaaacttt gtaatgccac tacaggtttt acaggctcaa
     6181 attttacaag tcctttttcg cacatttctt caaaactagg caaaagtgga ttttttttca
     6241 tactttcttc ataaaggtat tttagccaat ctttttgtgt tcttccttcg ctaaattctt
     6301 tttctatgcc aagtctttta gcaagttcaa gacacatttt ataaataggt tttgcttcac
     6361 caactggctc gatagctttt tgacaataaa taatataagg cttattgcta taatatcctg
     6421 cgctaggtct tataaaatct tcttgctcta gcatagttgc atcaggtaag atataatctg
     6481 cgtagttatt tgacggagtt ctagttacat taacatctat tatacactca cacaaattct
     6541 catcgcttaa aatatcatgc acttctttaa ttgtgctgtg ctgatttgta agacaatttc
     6601 ctgctgtatt gaaaataaat taatattttg ttttaattgt gttgtgccac gcaccccatc
     6661 gctaatatct gtcatttctt ttccacgata aatagcatct gtgaataaaa aacaaggaat
     6721 agaatctttt attggatttt taaaaggcat acctattata tcatatgttt tacttgaccc
     6781 tgttcgacat cctgtatttg tgccttctat gccaatattt cctgtaatac aagctagagt
     6841 tgctatcgcc cttgcatttt gttctccatt tgaatgtctt tgcactcccc aaccttgttc
     6901 tataaaacaa ggctttatgg tggcaatttc tcttgcaagt tgaactatgc ggcgtgctgg
     6961 atttttgtaa tcttgctagc ccaatcagga gttttttcta ctccatcgtt tagtcctaaa
     7021 catagctttc atagcttgag tttttggctg catcttgtgg cagagtattt tcgctaaagc
     7081 ctatggtgta tttatcaaga aaagttctat caagtaaatc ttcttttatc atcacataag
     7141 ttagcgcagc aattaaagct gcatcggttc ctggtgctat aggtatccac tcattgcaat
     7201 gccctatcat agaatcattg tatcttgggt caatgtgaat tattttacat ccactttctt
     7261 ctaaggcttt ttgataagca tagcctactc caccacctcc cattctagtt tcaacatgat
     7321 ttgctctaaa aaatatagct aattttgcag agtgtaaagt gtatatatcg ctagcaggag
     7381 atccaccata gaaaaaattc atagcatttg aaatttgagc cgtagaataa gaattatgat
     7441 aatttaaata accaccataa agacttaaaa gtctagccca tggaccttgt gtacagcgat
     7501 tgattattgt tcctgttgtt cctgttgcat aatttatata aaaggcttca ttgccgtatt
     7561 tttctttaat ttcttgcatt ttggcagaaa tttcatcaaa agcttgttcc caagaaatag
     7621 gcataaattt accttcgcct ctttttccca ctctttttaa tggtcttttt aagcgatttg
     7681 cattgtaaac tttatatctt gaactacgcc ctctaataca ggctcttgct tgacgattat
     7741 caaagctatc atcaccttca tgatcagtac taacatattt aataattcca tcttgagtat
     7801 gcacttttac aggacatttt gtttcgcaat ttacattaca tccagcccat ttgctgatca
     7861 atggtggagt ttttaataaa tttgcactta gacttatagg acttaaggtt aagccgccaa
     7921 acaaagaact ccattttaaa aaatctctac gattttgttc cgtgttatct ccttacattt
     7981 atgtgacaaa aagtaattgc gattatagta caaataataa ttttattcaa ttaaaattaa
     8041 gactttaaaa ctcctaaata taggctttat aatgaatttt tcgtttatga at
//
LOCUS       DAPIWV010000075         8045 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.076, whole genome shotgun sequence.
ACCESSION   DAPIWV010000075 DAPIWV010000000
VERSION     DAPIWV010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8045
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.076"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            74..460
                     /locus_tag="RJ272_001246"
     CDS             74..460
                     /locus_tag="RJ272_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDV7382319.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            530..1000
                     /gene="rpsG"
                     /locus_tag="RJ272_001247"
     CDS             530..1000
                     /gene="rpsG"
                     /locus_tag="RJ272_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDV7382320.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            1013..3088
                     /gene="fusA"
                     /locus_tag="RJ272_001248"
     CDS             1013..3088
                     /gene="fusA"
                     /locus_tag="RJ272_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDV7382321.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLVSEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            3117..3193
                     /locus_tag="RJ272_001249"
     tRNA            3117..3193
                     /locus_tag="RJ272_001249"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3151..3153,aa:Arg,seq:cct)
     gene            3211..3360
                     /locus_tag="RJ272_001250"
     CDS             3211..3360
                     /locus_tag="RJ272_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382322.1"
                     /translation="MIKIAFFITFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            3366..4067
                     /locus_tag="RJ272_001251"
     CDS             3366..4067
                     /locus_tag="RJ272_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HDV7382323.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILANFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIELIEKNLKSNQIQGDIFHDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDMKIKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            4057..4431
                     /locus_tag="RJ272_001252"
     CDS             4057..4431
                     /locus_tag="RJ272_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HDV7382324.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            4404..5681
                     /locus_tag="RJ272_001253"
     CDS             4404..5681
                     /locus_tag="RJ272_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HDV7382325.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            5678..6454
                     /gene="trpC"
                     /locus_tag="RJ272_001254"
     CDS             5678..6454
                     /gene="trpC"
                     /locus_tag="RJ272_001254"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HDV7382326.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            6464..6949
                     /locus_tag="RJ272_001255"
     CDS             6464..6949
                     /locus_tag="RJ272_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDV7382327.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            6939..7937
                     /gene="mnmH"
                     /locus_tag="RJ272_001256"
     CDS             6939..7937
                     /gene="mnmH"
                     /locus_tag="RJ272_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HDV7382328.1"
                     /translation="MLSEVEFVEFQKENFSFLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTAKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILKAKEELLDHFKAQLLF"
BASE COUNT         2879 a         1046 c         1551 g         2569 t
ORIGIN      
        1 ctagtttata tttttataag taaattttag atatcatcca aagtttatta catttttaaa
       61 gaaaggaatt attgtgccta ccataaatca attggttaga aaagagcgca aaaaagtttt
      121 agaaaaatct aaatctccag cgcttaaaaa ttgtccacaa agaaggggag tttgcactag
      181 ggtttatact acaacaccta aaaaaccaaa ctcagcgtta agaaaagttg ccaaagtaag
      241 acttactagt ggctttgaag tgatcagcta tatcggcggt gaaggtcata acttgcaaga
      301 acacagcatt gttttagtgc gtggtggtag ggtaaaagac ttaccagggg ttaaatatca
      361 catcgttcgt ggtgctcttg atacagcagg tgttgcaaaa agaacagttt ctcgttctaa
      421 atatggtgct aaacgtccta aagcaggcgc tgcaaaataa tcattcatac agacaaatcc
      481 gttagatttg attttgtttg agtaaaattt aaaatttgaa ggaaaaataa tgagaagaag
      541 aaaagctccg gtaagagaag tcttgcctga tccgatttat ggtaataaag taatcacaaa
      601 atttattaat tctttaatgt atgatggtaa aaaaagcaca gctacaacaa ttatgtatgg
      661 tgctttggaa gctattgata aaaaaggtgg cgagaaaaaa ggtattgata tttttaatga
      721 tgcgattgaa aatattaagc ctttattaga agtaaaatct cgtcgtgtag gtggtgcaac
      781 ttatcaagtt ccagttgaag ttcgtcctgc tagacaacaa gctttggcga ttcgttggat
      841 tatttctttt gcaagaaaaa gaagcgaaag aactatgatt gataaacttg cagctgagct
      901 tttagatgca gcaaatagca aaggtgcttc atttaagaag aaagaagata cttataaaat
      961 ggctgaagca aataaagcat ttgctcacta tcgttggtaa gaaggagtgt gtatgtcaag
     1021 aagtactcct ttaaaaaaag ttagaaatat cggtattgct gctcacattg atgcgggtaa
     1081 aacgactaca tctgaaagaa ttcttttctt tacaggcatg agtcataaaa tcggtgaagt
     1141 tcatgatggt gctgcaacta tggactggat ggaacaagag aaagagcgcg ggattactat
     1201 cacttctgcg gctacaactt gtttttggaa agatcatcaa atcaatctta ttgacactcc
     1261 aggccacgtg gattttacaa ttgaagttga aagatctatg cgtgttcttg atggtgctgt
     1321 tgcggtattt tgttcagtgg gtggggtgca gcctcaaagt gaaacagttt ggagacaagc
     1381 aaataaatat ggtgttccaa gaatagtatt tgtaaacaaa atggatagaa tcggtgcaaa
     1441 tttctacaat gtagaagatc aaattcgcaa ccgtttaaaa gctaatccag ttccacttca
     1501 aattccaatc ggtgctgagg ataattttaa aggcgtaatc gatcttgtaa ctatgaaagc
     1561 tttagtttgg gaagatgata ctaagccaac ggattatgta gaaaaagaaa ttccagctga
     1621 acttaaagaa aaggcagaag aatatcgcac aaaaatgata gaagcagttt ctgaaacttc
     1681 agatgagttg atggaaaaat atttaggcgg agaagaatta agccttgaag agattaaaac
     1741 agggattaaa gcaggatgtt taagtctttc tatcgttcct atgctttgcg gtacagcgtt
     1801 taaaaataaa ggggttcaac ctttacttga tgctgttgtg gcttatttac cagctcctga
     1861 tgaagtggca aatatcaagg gtgaatatga agatggcaca gaagtttctg taaaatcaac
     1921 tgatgatggc gagtttgcag gacttgcatt taaaattatg acagatccat ttgtaggaca
     1981 acttactttc gtgcgtgttt atcgcggttg tttagaaagt ggttcttatg cttataactc
     2041 aactaaagat aaaaaagaaa gaattggtcg tttgttaaaa atgcactcta acaaaagaga
     2101 agagattaaa gtgctttacg caggcgaaat tggtgctgtt gtaggactta aagatacttt
     2161 aacaggggat actcttgtaa gtgaaaaaga taaggtaatc cttgaaagaa tggattttcc
     2221 agatccagtt atttctgttg cagttgagcc aaaaactaaa gcagatcaag aaaaaatgtc
     2281 tattgcttta aataaattag cacaagaaga tccaagtttt agagtttcta cagatgaaga
     2341 aagtggccaa actatcattt caggtatggg tgagttacac cttgaaatta tcgttgatag
     2401 aatgcttcgt gaatttaaag ttgaagctga agtaggtcaa ccacaagttg cttatcgcga
     2461 aactattaga aaaactgttg aacaagaata caaatacgct aaacaatcag gtggtcgtgg
     2521 tcagtatgga catgtattct tacgccttga accacttgag ccaggtagtg gatatgaatt
     2581 tgttaatgat atcaaaggtg gagtaattcc aaaagaatac attcctgcag ttgataaagg
     2641 tgttcaagaa gcattacaaa atggtgtttt agcaggttat cctgtggaag atgttaaagt
     2701 aactgtttat gatggaagtt atcacgaggt ggattcatct gagatggcgt ttaaacttgc
     2761 tgcttctatg ggctttaaag aaggtgctag aaaagcaggt gctgtgatct tagagcctat
     2821 gatgaaagtt gaagtagaaa ctcctgaaga ttacatgggt gatgttattg gagatcttaa
     2881 caaacgccgt ggtcaagtaa atagcatgga tgagcgtggt ggaaataaaa tcatcacagc
     2941 attttgtcct ttggctgaaa tgtttggtta ttctactgat cttagaagtc aaactcaagg
     3001 tcgtgcgact tattctatgg aatttgatca ctatgatgaa gttcctaaaa atgttgcgga
     3061 tgaaatcatc aaaaaaagaa acggttaaat ttttagcggg atttttcccg ctttctgtcc
     3121 tcgtagctca gcaggataga gcgcaaaatt cctaattttg aggccgtgag ttcgaatctc
     3181 gccgtggaca ccattttatg aggtgttatt atgataaaaa ttgctttttt tataactttt
     3241 gtaatttctt ttttgacagc acaaagccca gtaaatttta aagaagataa taatataaca
     3301 aaagaacaaa atatatttaa agaacaacct ccaaaacgca ttaaaattcc aacgcattaa
     3361 aatatatgtc agatttgatt acgctagcac aattatcaca agggtatcgt tacaatagtg
     3421 attctttaat tttagctaat tttattttaa aacaaggaat taaaggcgct gtttttgatg
     3481 taggtgcggg ctgtggtatc ataggtattt tacttaaaaa aaatattgca aatttaagtt
     3541 tatctttgat tgatattcaa aaagaaaata tagaattgat tgaaaaaaat ttaaaatcca
     3601 accaaataca aggcgatatt tttcatgatg atttcaatca atttcaaagc ataaaaaaat
     3661 ttgacttcat agtttgcaat cctccatttt atagacaagg agcttacaag agtgaagatc
     3721 agcataaagc tataagtaaa tttcaggaat ttttaccctt gcatagcttt ttaactaaag
     3781 caaattctat gcttaagcca aatggtactt tgtatttttg ctatgaagct ttagctttgg
     3841 atgaaatttg ttttatttta aaagatatga aaataaaaat aacaaagctt tgctttgtac
     3901 atacacatca aaacaaaaaa gcaagacttg ttttgataca ggtaaaaaaa ggttcaaaat
     3961 cgccttgtga gattttacct cctttttttg tatatgaaaa tgaaatttta agcaaacaaa
     4021 tgcaagaaat tcacttaaga tttaggttaa aaagttatga tatttgataa aaatttttct
     4081 tatgcttttg atgaaaatgc ttgtgagaaa tgcggtggaa agtgttgcac tggagaaagt
     4141 ggcaatattt ttgcgagcaa ggaagaatta gaagcattaa gaaagcattt aaatttagaa
     4201 agcaaagaat ttgctgaaaa atacttgaga aaagtgggct ttaaaatgag ttttaaggaa
     4261 gtcgaatttg aagatggttt tgcttgcatt ttttttgata ctcaaaaaag aaattgcagt
     4321 atctacgatt ttcgtccaaa acaatgcaga acttttccat tttgggaata ttttaaaaca
     4381 catcaaaagg aattagaaaa agaatgtata ggtatttgtt atttgtctta gcagcctttt
     4441 ttttggcagc ttgtggaagt tcaaaaatca atgttgttta tcctgattat acaaaatata
     4501 aaagcaatga ttttgattta agggttatga aggcttataa ttatgagtat tataaacaat
     4561 acaaagaagc cagagatgaa tttttaagtc tttatcaaga ttataataat actaattttt
     4621 tagaaaatgc atttttactt actttagcaa acaatcttga caagcaagca gagttaaata
     4681 atctagcaaa gccttattta aatcaaaatg acaatcttaa gcgacttagt gctctttatg
     4741 ctttaaattc aaatgatatc aacaatgctc aaaaacttat gaaagagctt ttaacaaaaa
     4801 aggatagtga tcctagaaat ttagagcttt acggggatat tttggttaaa aaaaatgatt
     4861 taaaaaatgc tacaaaatac tatagatctg cttataatca agtgcaaaat gaagaaattt
     4921 tatttaaact cataggaatt tatgcgattt tgaatgatac tttaaatatt aaaaatgttt
     4981 tagaattttc aagaaaaacc aatggttgca ctctcaaaac ttgcgtcttg cttgctaaaa
     5041 tttattttga tgaaaaaaat atcgaagctt taaaaagtat atataaagag ctttatcaac
     5101 ttaccaaaaa taaaagtttt gtattggctt tagttgagct tttaaattct caaggcaaaa
     5161 cagaagaagc tttaaaaatt tctttgcagt atgatttaga tgatgacatt aaactcgctt
     5221 tgtatcagaa tttaaaacgc tttgatgatg ctaaaaaaat gagtttagct ctttatcata
     5281 aaacaaaaaa taaagaatat cttctacgag cggcagtttt tgaatttgaa gctgcaaatg
     5341 aagctaaaaa aatcactcca aaagtaattg attctgtaaa agaaaaattc gaacaggcta
     5401 tcgataaaga tagcaatgct ttgtatttaa actactatgg atatttgctt atagattatg
     5461 atttagatgt taaaaaaggt atagagcttg tgaaacttgc cttagaaaaa gatccacaga
     5521 atttgtatta tttagattct ttagcttggg ggtattataa actaggcgat tgtaagcaag
     5581 catgggaaat tttaaaacaa acattagatg ataaagaatt tgcaaattct gatgagagca
     5641 aagctcatat aaaagcgata aaggcgtgta taaaaccatg atattggata aaatttttga
     5701 aaaaacaaaa gaagatttaa aagaacgcaa actaaaactt ccttatgata tgttagggcg
     5761 ttctttagct tcaaatcctt tctttccaaa agatgtgatt aaggctttaa aaagagtaga
     5821 aaaagaagtt aaaatcatag cagaagtaaa aaaagcaagc cctagcaagg gagtcattag
     5881 agaagacttt gatcctttga gtatcgcttt aaattatgag aagaacaaag ctgcggcgat
     5941 ttctgtttta actgagccgc atttttttaa aggttcttta gaatacttaa gtcttatacg
     6001 ccgttatacg caaattcctt tacttagaaa agattttatc tttgatgagt atcaaatttt
     6061 agaagctttg gtttatgggg cggattttgt attattaatc gctaaaatgc taagcatgaa
     6121 agagcttaaa aaactgcttg agtttgcaag acatttaggt cttgaggctt tggttgaaat
     6181 tcatgataaa gaggatttga gtaaggctat ttttgctgga gcggatatca ttggtatcaa
     6241 tcatcgtaat ttagaggatt ttactatgga tatgagtttg tgcgaaaaac ttatcccaca
     6301 aatcccaaat tcaaaaatca tcatcgcaga aagtggttta gaaaataaag aatttttaga
     6361 gcatttgcaa aatttaggcg ttgatgcttt tttaatcggc gaatatttta tgcgcgaaaa
     6421 agatgaagga aaggctttaa aagctttgct ttaaggaggg aaaatgcagt atttgtatgc
     6481 accatggcgg agtgagtatt ttgaaaaaga aaaaagcatt tgtccatttt gtgattgtgc
     6541 taataagatc aaaagcgatg aagaattagg cgtgattttt agagcaaagc attgttttgg
     6601 agtgatgaac cgctatcctt attctgcagg gcattttatg gtgattcctt atatacatga
     6661 agagcatata gaaaatttaa gtgatgaaat ttggcaagaa atgagttatt ttgtgcgttt
     6721 gggggtaaaa attttaaaag agcaaattca tgcaaatgga gtgaatatcg gtatgaattt
     6781 aagcaaggat gcaggagctg gcatagcttt tcattgtcat tatcatctag tgccacgctg
     6841 gtcaggagat acaaatttta tcacaaccat aggagaaact agggtttgtg gcactaatat
     6901 agagcaagtt tatcaaaaac ttgttttggc ttttaaaaat gctcagtgaa gttgaatttg
     6961 tagagtttca aaaagaaaat ttctcttttt taatcgatgc aagaagccct agagaatttt
     7021 tgcattctca cttgatagga gctttaaatt tttatgcact caatgatgaa gaatatcaag
     7081 aaataggaac aatttataag aaaaatcaag ctttagctaa ggctatgggt gcgagttata
     7141 tttgtcaaaa taccgctaag catatattag aaatcactca aaattttcgc ataggagaaa
     7201 aggtggggat ttattgttct cgtgggggtt tgcgttcaaa gtctatcgca gtgattttaa
     7261 gtgagcttgg ctttagggtg gtgcgtttaa aaggtgggtt taaagcttat agaacttttg
     7321 taacgcatta tttcgaaaat gaaataaatt ttgatttttt tgctctttgt ggtaatacag
     7381 gttgtggaaa aacagagctt ttagaacaac tcccacaagc tataaattta gaaaaaatgg
     7441 caaatcattt aggctcgtct tttggtgata ttttaggaaa acaacctacg caaaaagctt
     7501 ttgaagcaga actttttcac aatattcaaa atttagaaaa ttttgctttc atagaaagcg
     7561 aaagtcgcaa aataggggat attatcttac ctttgaaatt ttatgaaaaa atgcaaaagg
     7621 cttttaaaat ttattgtttt tgttctttgg aaaatcgcgt tagaagaata caaaaaattt
     7681 atcaagaaaa aatgactcct ttgaaatttc aacaatgtgt gcaaaaaatc agtccttata
     7741 tcagcttaaa tttacgccaa gatttgcttc aaagttatga gagaaaagaa tggcaaaagc
     7801 ttattgttat gcttttggag tattatgata aaacttataa aaaaccagat aagattgatc
     7861 ttgagttaaa tactgatgat attttaaaag ctaaagaaga gcttttagat cattttaaag
     7921 cacaattact tttttaatat cagataattt tattaaataa tcaaattttt tcttcattat
     7981 cttgtaataa tcctttttat ctttgttgtt ttttaacttg gctcaaattt ttattttaat
     8041 gctag
//
LOCUS       DAPIWV010000076         7924 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.077, whole genome shotgun sequence.
ACCESSION   DAPIWV010000076 DAPIWV010000000
VERSION     DAPIWV010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7924
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.077"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            79..3591
                     /locus_tag="RJ272_001257"
     CDS             79..3591
                     /locus_tag="RJ272_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HDV7382329.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINPQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAVILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVNPNNYENLKANEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(3599..4510)
                     /locus_tag="RJ272_001258"
     CDS             complement(3599..4510)
                     /locus_tag="RJ272_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDV7382330.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(4707..4792)
                     /locus_tag="RJ272_001259"
     tRNA            complement(4707..4792)
                     /locus_tag="RJ272_001259"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4756..4758),aa:Leu,seq:gag)
     gene            complement(4828..5166)
                     /locus_tag="RJ272_001260"
     CDS             complement(4828..5166)
                     /locus_tag="RJ272_001260"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDV7382331.1"
                     /translation="MKKVLFLLLACAAVAFAAEINAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            5400..6734
                     /locus_tag="RJ272_001261"
     CDS             5400..6734
                     /locus_tag="RJ272_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7382332.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFAMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            6747..>7924
                     /locus_tag="RJ272_001262"
     CDS             6747..>7924
                     /locus_tag="RJ272_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7382333.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNVITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     "
BASE COUNT         2571 a         1038 c         1334 g         2981 t
ORIGIN      
        1 aaaagataat atagataatt ttcctaaaaa ctgataaatt cttttgtaaa ataagcgcta
       61 attgacgagg tttaaataat gcaaaaaaaa tcttttttga aaatttacgg attaattcct
      121 tttttactta tagcattcat caatgctttc gtggatttgg gacataaaat tattattcaa
      181 aatactattt ataaggccta tgaaggaagt gagcagttat ttttaaatgc tatagttaat
      241 gctttgattt tacttccttt tattcttatg ctttctcctt cgggtttttt agcggataaa
      301 tatccaaaaa atattgtaat gaaaatttca gcaattttca atgttatact cactttaata
      361 atttgcattt gttactatag cggtgctttt tggatggctt ttatttttac ttttataatg
      421 ggagcacaag cagcgattta ttcaccaagt aaatacggtt ttattaaaga actcgtggga
      481 aaagactttc ttgctatggg taatggtgta attaatgcgg taagcattgt ggcaatctta
      541 gcgggaatgg ctttattttc tttaagcttt gaaagtcttt atagttctat gtataatcaa
      601 acagatgaaa ttttaaaaga agtagcgcct ttaggaattg tgctaatttt attttcttgt
      661 atcgaagtat tttttgcgtg gcgtttacct aagctcaaac aaacaaataa agatttagtt
      721 tttaataaaa aagactatat tcgtggaaaa cttctaataa ataatcttaa gcttgttttt
      781 aaaaataaaa ctatttggct ttgcataatt ggaatttcat ttttttgggc tatatctcaa
      841 ctttatcttg tcagctttcc tgtctttgct aaaaatgaac ttttcataga aaatactttt
      901 tatgtgcaaa tttcactcgc tttttctggt ataggagtga ttttaggctc tttagtagct
      961 ggtaaatttt caaaaaatta tatagaactt ggatttattc cacttggtgc attgggtatg
     1021 tttttaatgg cttttttaat gccttatttt ataagtttat taagttatag ttttttattt
     1081 ttcttttttg gattttgcgg agcccttttt atcattcctt taaatacttt aatccaattt
     1141 catgctaaag aaaatgaatt aggacaaatt cttgcaggaa ataatttttt tcaaaatatt
     1201 gccatgttgg gatttttgct cttggcaact ttatttgtaa aatttgaaat caatgtgatt
     1261 tatttgtttt attttattgc tttggtaacc tttataggaa gtttttacat acttttaaaa
     1321 ctcccctttt ctttagtgcg tatactttta agcatagctt ttttacaacg ataccgttta
     1381 cttgtggaag gttttgaaaa tataccagaa aaaggtggag ctttactttt gggtaatcat
     1441 atttctttta ttgattgggc tgttgtacaa atggcaattc caagaaaaat ttattttgtt
     1501 atggaaagaa gtatttattc taaatggtat attaaaattt ttcttgataa atttggtatt
     1561 attcctgtat caagtacagg aagtaagacg agtttagaac tgatagcaaa gcatattaaa
     1621 gaaggtaatt tagtttgctt atttcctgaa ggtacacttt cgcgacatgg gcaattaaat
     1681 gaatttaaag caggatttga attagcttgt gaatgtttaa gtgaagatga tggaaaaatt
     1741 attccttttt atataagagg gctttggggt agcgcttttt caagaagtga tgaagaattt
     1801 tcagcaagaa accgcacttt aaataaaaga aaaattgcta tagcttttgg taaagctatg
     1861 cctttgcatt ctaaaaaaga tgaagttaaa gctaaagttt ttgaactttc ttttatggct
     1921 tggaaatcac aatgcgaagc tatgcatact atagcaagag cttggataga tacagctaaa
     1981 aaaaatctaa atcaaatagc tattatcgat acactagctg gagatatttc ttatagaaaa
     2041 atgttgactc ttagtttatt tcttaatttt tttattaaaa gaaaatccaa agaattaaac
     2101 attaaccctc agcgtggaag ttacgctcct aaagaggaag ctataggaat tttactacct
     2161 gcttcttttg caagttcttt aaccaatcta tctgttttaa tcgcagaaaa aattgcagta
     2221 aatcttaatt tcactgctgg agaaaaagct ctaaaagcag ctataaaaaa tgcgcaaatt
     2281 tcacaaattt atacttctaa aactttttta gaaaaattag caaataaagg tataaaccta
     2341 aatttcgata caaatataca tttaatttat tttgaagata ttgtagaaga ttttaaaatg
     2401 caaaaaacta aaatttttag catgatgcta gcagttagta ttatacctag ttttatactc
     2461 aaaagcatct tcactccttc aaaaaacaat cttgccatcg cagttatttt atttagtagt
     2521 ggaagtgaag gttctccaaa aggtgttatg ctcaataacc gtaatatttt aagcaatata
     2581 gcacaaattt ctgatgtgct ttgcacaaga aataatgatg tcattctctc atctttacca
     2641 ccttttcatg cttttggact taccgtaact acatttttgc ctttgcttga aggtattaaa
     2701 agcatcactt tttcagatcc aaccgatgcc ttaggggttg ccaaagctgt tgctaaaaat
     2761 aatgtcacta ttatgtgtgg aacttcaacc tttttaggaa tttatgcaag aaataaaaag
     2821 cttgatgctt taatgtttga aagtttaaga atagttgtat cgggcgctga aaaactaaaa
     2881 aatgaagtaa gaactacttt tgaaatgaag tttaaaaaaa gcatttttga aggttacggg
     2941 gctacggaaa ccacgcctgt ggcgagtgta aatttgccaa atcattttga tgtggattat
     3001 tggcttatac atcgtgccaa taaagaagga agcgtaggaa tgcctctacc tggaactgcg
     3061 gtacgtattg ttaatccaaa taattatgaa aatttaaaag caaatgaaga tggactcata
     3121 cttataggcg gtcatcaagt tatggtaggc tatcttaatg acaaagaaaa aaccgatgaa
     3181 gtggttaaag aaattgatgg cataagatgg tacaacacgg gagataaggg acatttggat
     3241 gaagatggtt ttttatatat tgtcgatcgt tattctcgct ttgcaaaaat tggcggagag
     3301 atgatttctt tgggtgcaat agaagaagaa attgccaaat ttatagacac tgaagtggtt
     3361 aaattttgtg ccacatcttt agaagatgag aaaaaagggg aacaaattgt tttactcata
     3421 gaatgcaata atgaaatttt tgaaggagta tgtgaggcta taaaaaattc taatatacct
     3481 acacttttta aacctagata ttattttcaa atagaaaaaa ttcccctcct aggttcagga
     3541 aaagttgatc ttaaaaaagt taaagaatta gctaaaaatt tagccatata atttgagctt
     3601 ataacaaagt ccaaattaaa attggcatag aaacaaaagc aaaaagaact ccaaaggcta
     3661 cagcacttac ggctaaatta ctatctagtt tagctttcat taccatagct cctgctaaag
     3721 tcatagtagg agctgcactt tctataatag caacgatggt agaatctttt aattccaaat
     3781 taaatatttt taaacaaaat acaaaaaata aaggagctaa aatcatttta gcaaagatga
     3841 caactattgt aggtttgtaa gaggttttaa tcgccataaa gccaagtcct aaacctatag
     3901 caaaaagtgc aacaggggtt gcagaggcac caaataaacg aataggagag aaaataaatt
     3961 caggtaaagt aatcaattta cacaaaaaac caaaaagcaa agctaaaaaa ggtggaaaac
     4021 taagaatttt tttaacatta gcaagcaaac tgactttttc tccatttccc aaagaaagta
     4081 taaaaggtcc aaaaagtgat ataggtaaag ttgtggctaa agcatcgtaa aatataactt
     4141 cagcgctaaa ttgtgggtca ttaaatatac cagcaacaat aggcataccc acaaatatag
     4201 tatttccaaa acaagaaagc aaaaacatac tgactaaagt tactttagaa aaatgaaaaa
     4261 cttttccaat aagaatagca aaaaaagctg ctagtataca gctaaacaat ccaataaaaa
     4321 taaaaataat caatgaaaaa tcaaaattta aatgatatgc tttatcgaaa atcaaacaag
     4381 gtaaagcaaa aataatagca aaatctaaaa aagtcctagc ttgtttttgc ttcaaaacgc
     4441 caattctttt ggcaaaatat ccgcctgcaa gtaaaataaa aattgtaaat aatggtataa
     4501 aaacaaacat tgagtaatcc tttttaaggg atggtttttg aaaacggata gaattatatt
     4561 ctttatactt aaaaaaaatc ttaatatttt ttaagttttt taaaaaaacc aatatttttt
     4621 attttttgta actttaagaa attgtaagtt gaaatttgat tttgaatagt tagtatttta
     4681 agttgaatga ttataatttt aaataatggt gcggttagcg agatttgaac tcgcacacgc
     4741 ggagcgcacc accccctcaa gatggcgtgt ctaccaattc caccataacc gcatagaaaa
     4801 aagcccaaaa aagggcttta ataagtttta ttgtaaaact ataaaaggat ttgcgtaaag
     4861 tgctattagc gcgataacaa gagcatagat aacttgtgct tcgatcatcg ctaaagcgat
     4921 aaacatagtt gtcattaatt ttggcccaag accagggttt ctagctgttc ctgcaattgt
     4981 tgccgctgca gtattaccca taccgatagc accaccaagt gctgcaacac caagacctag
     5041 gcctgctgca agaactgaaa atgctttaat ccatacatta atagcttctt gctctactgg
     5101 agcattaatt tcagctgcaa aagctactgc tgcacatgct aataataaaa aaagaacttt
     5161 tttcattatc ttaacctttc tataaaaaaa atttttttca atttttaaat cagttcggct
     5221 tgcgtatccc tacttaagac ttaaaaataa agccgaatta taaccaaagg tatctttatt
     5281 tttattgaaa tttacaaaaa ttcacatttt tgatttaaat ttgattgttt tcaataaagc
     5341 ttaaaagttt ttttgcttta ataatatttt aaaataattt ttaagttaag gttgcaacat
     5401 tgagttctaa attttcaaaa ataggtttca ttttagcggt agcaggttca gcggtgggct
     5461 tgggtaatgc ttggaaattt ccaacactag taggtcaaag tggtggatct gcttttatct
     5521 tgctttatat aattcttact ttaggtgtag gttttgtgat atttttagct gagcttagca
     5581 taggaaaaat tagtgaaaaa gatccggtta atgcctatga aaagttagca ccttcaaata
     5641 aaaaagcttg gtcttatgtt ggttttgcta tggtgggggc gattttaata gtttcttttt
     5701 ataccttggt gattggctgg atagttaaat atgtgttttt aagtatcact ggaaatttgc
     5761 ctatggatct agaagtaagt aaagcacagt ttggattttt tataagtgag gattttttaa
     5821 gtcagtttat ttgttttact ttggtttttt tatgtgtttt ttatattgtt tctaaaggtg
     5881 ttaagaatgg gattgaaaag ttaaatgttt ggatgatgcc ttcattgttt attttactta
     5941 ttttgatgct tgtttatgct attagcaaag atggttttat aatggcggtt aaatttcttt
     6001 ttgtacctga tttttccaaa atcaacactt caaacgttct tgaagcctta ggacttgctt
     6061 tttttagtct ttctttgggc gttggaacga ttattactta ttctgctagt ctgcctgata
     6121 aaactaattt tattaccagt actttaaata ttatttttat caatctttta gttggtttat
     6181 taatgggttt ggttgttttt acttttatct ttgaatttgg ttacaatcct aatcagcaag
     6241 gaccaggact tgtttttatt tccttagcta ctttatttga aaaaattgga gtgattggtt
     6301 gtatttttgg agcagcgttt tttatttctt taatctttgc tggtattact tcagctgttt
     6361 caatgataga gcctttcact ttttacctta ttaatacttt tggtatgagc cgtaaaaaag
     6421 ctttgatttt aataggaatt gttgtttata ttttaggaat gttgtgtatt ttatcttctt
     6481 taaaaagtac tcagtttgga ttttttggaa tgagtttttt tgatttgctt gatagtgttt
     6541 caagcaaggt tattatgcct ttaggtggaa ttttggcagc tatttttgtg ggatttgtga
     6601 tgaaaaaaga agctttaaaa attttattta aaccttatat gaggggtata ttttttgaac
     6661 tttggtatgt gtttttgaga tttatttccc ctttggctgt tgttatagtt atgatagccg
     6721 cttttttaaa gtgagtttga aaaataatga gaacatattt ttcaaaaatc ggttttgtat
     6781 tggctgttgc tggtggagcc gttggtttag gtaatgcttg gaaatttcca actttaagcg
     6841 cagaaaatgg tggttttgtt tttgtgcttt tatatttgtt ttttacttta actataggat
     6901 ttagtatttt tttggctgaa gtggctatgg gacgtttaag taaaagtgat cttgcaaatg
     6961 cttattcaaa tcttgccata aaatatggca atagatggcg atatggcggc gtttttatgt
     7021 taggtggtat ttttatcctc tctttttatc tagttatcat gggatgggtt ttaaaatata
     7081 ctgtagtgag tctttattat cttcctaaaa ctttagatga agcagcaagt aattttcaga
     7141 atgtaattac tacaaatttg acaagttctg tttttttctt cactttatct ttttttctta
     7201 ctttattgat agtatctaaa ggtttaatca aagggattga aaaattaaac gttgttataa
     7261 tgcctagctt atttttaatg cttgttttta tgttgtttta ttgcatggga tttaagcaag
     7321 gttttgcaaa tgctttttct tatttatttt atcccgattt ttcacatttt aaattcagct
     7381 ctattgccga agctttaggg cttgcatttt ttaccttatg cttgggaata ggttgtatag
     7441 ttacatattc atcggccttg gataaaaaaa caaattttat aaaaagttca gtgtatattg
     7501 ttttgattaa tttattgatt tcttttatta tgggacttat tgtttttact tttatctttg
     7561 aatttggagc cgatccgcat actcaaggag caggaattgt ttttgtatcc ttgatgagtt
     7621 tgtttaatca acttggagct ttaggctata tttttgcatt ttgttttttc ttagcacttt
     7681 tttttgctgg tattacttca gctatttcaa tgatagagcc tttaactttt tatatgatta
     7741 ataactatca aatttctcgt gttaaagctc tatttttaat aggtttattt gtttttgttt
     7801 ttggaatttg ttgtatcttg tcattaaatt taaatttttt ttctatgttt agtttttttg
     7861 gcaaagattt ttttacttta ttagataaat taacttcaaa ttttttactt ccacttggtg
     7921 ctat
//
LOCUS       DAPIWV010000077         7856 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.078, whole genome shotgun sequence.
ACCESSION   DAPIWV010000077 DAPIWV010000000
VERSION     DAPIWV010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7856
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.078"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            145..744
                     /locus_tag="RJ272_001263"
     CDS             145..744
                     /locus_tag="RJ272_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide A protein"
                     /protein_id="HDV7382334.1"
                     /translation="MNNILLKLDKNRHFCFLKDNINYENKKDIAIFRGAVYQNHRKEF
                     FDSYFGRTFCDIGDTSKQPSQWKKNFLNKKEQMKYKFIISLEGNDVASNLKWAMNSNS
                     LVLAPKITCETWFMEGTLKPNYHFALIDNENLSAVIEYFKSRPKDALEIINNAHQYIK
                     KFLDKKKEFHIGILVLTKYFYYSRQLELNKKRDILELIK"
     gene            884..959
                     /locus_tag="RJ272_001264"
     tRNA            884..959
                     /locus_tag="RJ272_001264"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:917..919,aa:Ala,seq:ggc)
     gene            963..1038
                     /locus_tag="RJ272_001265"
     tRNA            963..1038
                     /locus_tag="RJ272_001265"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:996..998,aa:Val,seq:gac)
     gene            1066..1596
                     /locus_tag="RJ272_001266"
     CDS             1066..1596
                     /locus_tag="RJ272_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7382335.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     KAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(1576..2178)
                     /gene="leuD"
                     /locus_tag="RJ272_001267"
     CDS             complement(1576..2178)
                     /gene="leuD"
                     /locus_tag="RJ272_001267"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDV7382336.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(2180..3592)
                     /gene="leuC"
                     /locus_tag="RJ272_001268"
     CDS             complement(2180..3592)
                     /gene="leuC"
                     /locus_tag="RJ272_001268"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDV7382337.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(3579..4655)
                     /gene="leuB"
                     /locus_tag="RJ272_001269"
     CDS             complement(3579..4655)
                     /gene="leuB"
                     /locus_tag="RJ272_001269"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDV7382338.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFISQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERITHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            complement(4652..6187)
                     /gene="leuA"
                     /locus_tag="RJ272_001270"
     CDS             complement(4652..6187)
                     /gene="leuA"
                     /locus_tag="RJ272_001270"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDV7382339.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTLIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQIYEIISPSAIGIHDNRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            6507..7136
                     /locus_tag="RJ272_001271"
     CDS             6507..7136
                     /locus_tag="RJ272_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382340.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(7172..7816)
                     /locus_tag="RJ272_001272"
     CDS             complement(7172..7816)
                     /locus_tag="RJ272_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDV7382341.1"
                     /translation="MNKKLLSIIASATLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
BASE COUNT         2697 a         1437 c         1048 g         2674 t
ORIGIN      
        1 tttaaaagca cctcttatgc ttttgatgct tatgaaatca gtaaatactt taaagatgaa
       61 tttttatgga ataaagaatt tggcgatgta agacatactt ttaaagaagc aactatttgc
      121 aaatcgagat ctttggaaaa taatataaat aatattttat taaaacttga taaaaatagg
      181 cacttttgct ttttaaaaga taacataaac tatgaaaata aaaaggatat agcaatattt
      241 agaggagcag tatatcaaaa tcatcgaaaa gaattttttg attcttattt tggtagaact
      301 ttttgcgata taggagatac ttcaaaacaa cctagccaat ggaaaaaaaa ctttttaaac
      361 aaaaaagaac aaatgaaata taaatttata atttctttag agggtaacga tgtagcaagc
      421 aacttaaaat gggctatgaa ttctaattct ttagttttag ctccaaaaat aacttgcgaa
      481 acttggttta tggaaggaac tttaaaacca aattatcact ttgctttgat tgataatgag
      541 aatttgtcag cagtaattga atattttaaa agtcgcccaa aagatgcatt ggaaattatt
      601 aataatgctc atcaatatat taagaaattt ttagataaga aaaaagaatt ccatatagga
      661 attttggttt tgaccaaata tttttattat tctagacaac ttgaacttaa caaaaaaaga
      721 gatattttag aattaatcaa atagtaaaat tactctcatt aattctctaa tttttcataa
      781 aaaataaatc tttttataca tatattacat cataaattaa aaatttgatt ttagttttca
      841 gccaaaaaca agtaatattg cgataaaatc tcagacttat aaaggggcat tagctcagct
      901 gggagagcac aacgctggca gcgttggggt cagcggttcg aacccgctat gctccaccat
      961 atggttccgt agctcagctg gtagagcact accttgacat ggtagtggcc gttggttcaa
     1021 gtccaatcgg agccaccatc acccttcctt atacaaagga ttatcatgca aaacactatc
     1081 atacaaaaag ccgtcaataa agatttaaat tctatacttg aaatcacaaa agatgcttta
     1141 aatgctatga aaactatgaa ttttcaccaa tgggatgaga attatcccaa tgaaatagtt
     1201 tttcaagaag atatacaagc acaagaactt tatgtgttta aagaaaatga tgaaatttta
     1261 ggctttatct gtatcaatga aaaatttgaa cctgaatttt acaaacaagt tatttttaac
     1321 aaaaattatg atgataaagc cttttatcta caccgtttag ctgtcaaaca aaaggcaaaa
     1381 ggcaaaggcg tggcacaaaa acttttaaat ttttgcgaaa attttgcctt ggaaaatcac
     1441 aaggcaagtt taagagcaga tactcatagt aaaaattttc ctatgaattc gctttttaaa
     1501 aagcttgatt ttaatttttg tggaaacttt gacataccta attaccaaga tcctttttta
     1561 gcttatgaaa aaattctaaa ccaaaaagct ttttgagttt ttttcatagg ctttgatttg
     1621 tgcttcatgt tttaaagtta aagctatatt atcaagccct tccaaaagac aaattctgtg
     1681 aaaatcatct aaatcaaaag aaaaaatctt atctttaaaa aatactcttt tttccaacaa
     1741 agaaatttct atatttttat cttgggattt ttttaactca tcaactattt ccaaaacctc
     1801 atctttagca agttctatag tgagcaaacc gtttcctaag gcattgtttt taaaaatatc
     1861 cgcaaaagaa ggtgcgataa tagctctaat accataatca accaaagccc aaggcgcatg
     1921 ctctcttgaa gagccactac caaaattttc aaaactcacc aaaatagagc tattttgata
     1981 ttctttttta ttgagattaa aatccatatt taaaacactt tctttatcat ctaaataacg
     2041 caaatcatgg aacaaatgct tgccaaaacc ttgcttagac actgcaagta aaaattgctt
     2101 aggtataatt tgatctgtgt ctatattggc atattctaaa ggacaagcta tacctttatg
     2161 tataataaat ttttgcatat taaactccta aatactttct attatcacaa ataacacctt
     2221 ctatggcaca agctgccgca cttgcaggac tcatcaaatg agtgatagaa cctttacctt
     2281 gtctgcctac aaagttacga tttgaagttg aagcaactct ttgacctgaa tttgctttgt
     2341 catcattcat accaagacac atagaacacc ctgcatatct ccactcacac cctgcctcga
     2401 taaaaatctt atcgagtcct aaattttcag cttcttttct tacttgcatt gaaccaggca
     2461 cgattaaagc tttaacattt ttatgaattt tgcgcccttt taagatatca gcggctattt
     2521 taagatcttc taaacgccca tttgtgcaag atcctataaa tacaatgtcg atttttaccc
     2581 cttctataac ttgatcttgc tctaaattta cataagataa agcatcaagc aaagattttt
     2641 gctcactttg atttttaaaa tcacttattt ttggaatttt ttcatctata ccaatcactt
     2701 gcgaagggtt tgttccatag ctaatttgtg gttttatctt gcttacatct agagtaatac
     2761 tctcatcata ttttgctcct tcatcgcttc ttaaactctt ccaatactcg caatactttt
     2821 gaaattcttc tcctttaggt gcaaattcct ttcccttaat atactcaaaa gtgatctcat
     2881 caggagctat catacctact ttagctccaa attctatagc catattacaa agagtcattc
     2941 tagcttccat gcttaaattt tttataagtt ctccacaaaa ttctatagca taacctgtgc
     3001 cttttgctgt gccgtattgt gcgatcaaat acaaaatcaa atccttagca taaacgcctt
     3061 tttgaaactg ccctttacat tcgattttca tagttttaag tttggcttgt tttaaagttt
     3121 gcgttgccat gacatgctct acttcactcg tgcctatacc aaaggctaaa gctccaaaag
     3181 ccccatgtgt tgccgtatga gaatccccac aaactaaagt aaccccaggt aaagtaaagc
     3241 caagctcagg acctactata tgaactatgc cttgattttt atctccaagt cctaaaagcc
     3301 ttactccaaa ttccttagta ttttgcatca aagttgtaat ttgctctttt gccatatcag
     3361 aacaagcatt taaatccacg cttttagttg aaacatcatg atctatggta gccaaagtta
     3421 aatccgctct tgccattcta cgcttagcca ttttaagccc tgaaaatgct tgagggcttg
     3481 ttacttcatg gattaaatgt ctatcgatat aaagtatagg aagttcgttt ttgccttcat
     3541 aaaccacatg agcatcaaag actttctcat ataaagtttt agccattatt attctccttt
     3601 aaaatttcta aaatacaatc ccccatttca tcagtattta aatacgactt agcatttaaa
     3661 tccttagtca tttttccttg tgccaatgcc aaagatatag cattttctat atcctgtgcg
     3721 gcttgttctt ctttgaaact atactttaac atcaaagccg cacttaaaat ttgagctatg
     3781 ggattagcta tatttaaatg agctatatca ggtgcacttc cacctgctgg ctcataaagt
     3841 ccaaaacctt tatcgtttaa acttgctgaa cttaacaaac ccaaagatcc attaatggca
     3901 gctaactcat cgctcaaaat atcaccaaaa agatttgaac aaagcataac atcaaaaatg
     3961 ctaggatttt ttacaatctg catcgcagca ttatccacat acatgtactc taagtttata
     4021 tcttgataat cttttgcaac atttgccacc acttctcgcc acaaaataga acttgctaaa
     4081 acatttgctt tgtcgattaa atgcactttt ttctttctta ttcttgcact ttcaaaagcg
     4141 atatgagtta tcctttctat ctctttttta gtgtaaattt cagtatcata cgcactttct
     4201 ttgcctaaat cttgcttacc aaaataaatc ccacctgtaa gctctctaac acataaaata
     4261 tccactcctt tttggataat ctcatttttt aaaggtgaag catgagttaa actttcataa
     4321 attttacaag gacgcaaatt tgcaaacaaa ttaaaatgct ttcttaaagg caaaagcgag
     4381 gctctttcag gtctttgatc tatgggcaaa ttatcccatt taggcccacc cacagaacca
     4441 aataaaatcg catcactttg ctcacaaagc tttaaagttt catcacttaa agccactcca
     4501 taagcatcta tacttgcacc gcctatttta gcttcattaa attcaaaact aaaattgtat
     4561 ttttgtgaga taaaagttaa aatttttaaa gcctctttca ttaccaaagg ccctatacca
     4621 tctcctgcta agacagctac tttataagtt ttcatgccat tttcctttct tctactttta
     4681 aagagcgata aatcgcattg taagcactca caaaagcttg tgctgaagct tctataacat
     4741 ctgttgaaag tccttttcca tggaattttc tccctttaaa ttccaaatcc acatccactt
     4801 gcccttgagc atctactcct gaactttttg cattgatact ataagctttt aacacaggct
     4861 ttaaatttgt tatcctagca atgcagttaa aaactgcttc aacaggacca tttcctgtgc
     4921 aagcttcagt ttttaactct tctttaatac gcatacaaac acaagcagtt gggatattgc
     4981 cactaatcac gcttaatttt tcaatcacaa attcattttc ttcttcattt tcatagctta
     5041 aaaacatcaa agcttccaaa tcataatcat atacttgacc ctttttatcc gcaaggcgta
     5101 aaaaacgctc ataaacatca tctaaattat aagtattttc atcatagcct aaattttcaa
     5161 ggcaagtttt tatcatagcc cttccacttc ttgccgtcat taacatacga ttgtcatgaa
     5221 ttcctatggc actagggctt atgatctcgt aaatttgcct atttttaagc actccatctt
     5281 gatgaatgcc tgaactatga gaaaacgcat tgctacccac tatagcttta tgcgaaggta
     5341 tgctttcatt agtgatagct gaaactaatt ttgaagtttt aaagatattt tcacatttaa
     5401 tatcagtata aaaacctttt aaataatctt tcctagtttt tatcgccata accacttctt
     5461 ctaaagcaca attgcccgcc ctttcgccaa gtccatttat agtgcactct atctgtcttg
     5521 caccttgtaa aatagcactt aagctattgc ccgttgccat acctaagtca ttgtgacaat
     5581 gcacagaaat gatagctttg tctatatttg gcactttgtt aaataaaatt ttgatgatat
     5641 tagcaaattc acttggcaag gtatagccta cggtatctgg gatatttata gttttagcgc
     5701 ctgcttttat cgcattttcc accataaaac aaagattatc tatcagagtt cttcctgcat
     5761 cttcgcatga gaattctaca tcatcagtat aagatcttgc tcttataatc gctctttttg
     5821 ccatagacaa aatttcatca aaatcttttt ttaatttatc ttgcatatgc aaagtcgaag
     5881 tggctataaa agtatgaatt ctaaaatgct ttgccacttt taaagcttca taagccatat
     5941 ctatatcttt atccaatgct ctagaaagtg cacaaatagt tgagttttta accttagaag
     6001 cgatcttttg caccgcttta aaatcccctt gtgaagatac cggaaaacct gcttctataa
     6061 cgtctacgcc taaattttca agcgctaaag cgatttgtaa tttttgattg atacccaaag
     6121 aactgcctaa agcttgttct ccatctcgca aagtggtatc aaagattatg attttattat
     6181 ctttcatgat ttaatccttt aaaaccaaac agactgaatg aattaaaaat tcaaaaactt
     6241 aacaacaatg ataaaaaatt aaaaatgtaa aaaatgatta aaaataaaat tgagttttag
     6301 agtgagagtt gcagtagcag attaaaagta ttgtctttac ttttttgttg gactgaattt
     6361 gaaatttcaa aaatttgttt catcttttcc tcctttgtta aaattaatac ttaatgtatc
     6421 atatttttag taaatgtgtt tgtaaaattc ttaaattaag aaaattattg atataattgt
     6481 aattttaagt aacaaaaagg aagttgatgt taaaagaact cttagagatt aaaaaagaaa
     6541 tggaacctgt tatccacgaa gccaatgtga aattaaatgt cctagctcgt gaagtcatag
     6601 tccgaaaaaa agaatacgaa atttatgggc ctatggtaga tcgtgtttat cttgataatg
     6661 ccatttatgt taaagttatg tcaagtggac gcgatgtaaa aacagacaat gtgactataa
     6721 aaaatggttt ttatatggtt tttgttgccc ctgaaaaaga aagtacaaaa gatatcaaaa
     6781 ataaactcaa agtagcttat gaaggacttg ataacaaatt tatcgctaca cttatacgat
     6841 cttgccaacg ctttaaagag atcataaaca aaacccaagc tacacttgct aaagcttcta
     6901 aaatgaatgt agtagtaaaa acgaatttag gtgaagcaag tgctgctcta aaatttaaca
     6961 tcactataga atatactaaa gagaatcaaa aactcactcg tgaaaattca aaatcagcag
     7021 gaagtttcag agatactaaa acttatatca atcttgtagt agaaaaaaat acagattctc
     7081 aaatttgtga aaaactactt gatgatgttg aaaaatactt tatcggtgga ggttgatttc
     7141 attaatgcaa gttataaaaa cttgcattag attaaaattt ataattatat cctaaatata
     7201 caccataatt tgtttgttta ggatcgtaaa agtttgaacc cactttattt tgataaaaat
     7261 ttctagaatt ataatgaatt tgctctgctt taaagcctaa ttctatttca ttatgtggtg
     7321 tcaaatcata taaagcacct attttcgctc cataaaaata accgtcaaaa ttttgcgaca
     7381 aagataaaaa gcttgttttt aaggtaagat ctgttcttgc atatcctcca tacacaccta
     7441 aaacagctct ggttttttca aaaagcttag gagtaaaatc ataacctgtt aaaaatttat
     7501 gtgtagtaaa atcaccttcg atttgaattt taggagtttt gataaaatca ctaaattcat
     7561 cagaataatt ataaccagca taaattctat gattttcatt taaacgatat ccaagtttta
     7621 gaccaaacga tggtatatta cctgaaatat ctccattaaa attttgcttt gtattcttat
     7681 gttttaactc actttttact tgagcatgca tccaagctgc atcagcacct ataaaaaaac
     7741 cagaattctc atctgctaaa gccaaatttg aaaacaaagt agcacttgcg ataatgctta
     7801 ataatttttt attcataacc taactcctta taataaaatt cgatctaaaa aattta
//
LOCUS       DAPIWV010000078         7671 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.079, whole genome shotgun sequence.
ACCESSION   DAPIWV010000078 DAPIWV010000000
VERSION     DAPIWV010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7671
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.079"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            1..528
                     /locus_tag="RJ272_001273"
                     /pseudo
     CDS             1..528
                     /locus_tag="RJ272_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
     gene            679..2094
                     /locus_tag="RJ272_001274"
                     /pseudo
     CDS             679..2094
                     /locus_tag="RJ272_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3393..4340
                     /locus_tag="RJ272_001275"
     CDS             3393..4340
                     /locus_tag="RJ272_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDV7382342.1"
                     /translation="MKTLEDIKAMSYKQKDELEDLVLEIIDDNDLVKLKDILKDYPVK
                     ISCYELNIKDEDGDFPLFDPFNLIIRAAHACEDNNNDFSILDYLFDEYGLSLKDPKYN
                     FAFHDMKYIKEASEKYILMEEVEDDPCIYQNALIYDYILNADNPNSQIIKYLVNRGAK
                     FEVHDEGYSGRTPMHFWARRNNYELLELAIKGGANVDMQTLLDPKSEYNETLLFEAVK
                     EAETYRVTQLLIELGANVNFATPRTPLDDTKGSRNKKLLKDAGAMTSEQIRKKFNLPA
                     YDSSHCEIDGKTDMDLLGKYHDEYSKLLNDAIKKAKESE"
     gene            4518..4850
                     /locus_tag="RJ272_001276"
     CDS             4518..4850
                     /locus_tag="RJ272_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382343.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
     gene            4847..6097
                     /locus_tag="RJ272_001277"
     CDS             4847..6097
                     /locus_tag="RJ272_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382344.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKTMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CRDKSKYILHRYYQKNDLTEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPC
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSF
                     KEYIEEYANTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILS
                     KQKDIDINFVNFIDYKDYVYKNKDDFWEFSAKENSILWEKFLSKNTLKPFPLNFDCSL
                     EEKLLYAKDEQLENILKTHKTFHG"
     gene            6516..6866
                     /locus_tag="RJ272_001278"
     CDS             6516..6866
                     /locus_tag="RJ272_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HDV7382345.1"
                     /translation="MEYDRIRWEGMGDDNKQSSIQTHHIATDKNKKFTKEFRKITKKY
                     NMELDEDWNKVKMPHRGRHPNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKN
                     NPAILHKDYYKERK"
     gene            6866..7432
                     /locus_tag="RJ272_001279"
     CDS             6866..7432
                     /locus_tag="RJ272_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382346.1"
                     /translation="MKYYKMMYNYNHNDVDNWYSCDLVDIKNNDEYALLESKPITNWQ
                     TPSFEIDKDDGNILTDLIHNDCGWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     GCKIMHVTKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPV
                     FVSSEFRKIVRENNLLGFSFSEVMVYEN"
     gene            7517..>7671
                     /locus_tag="RJ272_001280"
     CDS             7517..>7671
                     /locus_tag="RJ272_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382347.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFK
                     KPWENFEL"
BASE COUNT         3156 a          944 c         1095 g         2476 t
ORIGIN      
        1 atttagcatg ttgggaatta aagaatacga tattgcaaaa aaatatttac catttgcacc
       61 tttactacta agtttaagac gacctaaaac acacattgaa agagttttac aagtcaattt
      121 taaacttaag gataaattat caattattga aaatttaccc catcaaattt taatttcaaa
      181 ttcgcaaaaa aataacttag gaataaagaa caatatttta ggaaataatt ttatattggg
      241 cgataaattt atctcttatc aaaacaaaat agcgatctat ataaaggata tttcatatca
      301 agaagcggtt aaatttatgc caatggaacc aaacacgatg atttaaaaaa tagcataatg
      361 tttttaacaa ataatgaatt ttgtgttgat ttatatctta aaatcaacta ttcttcagaa
      421 atgaagtttg tgttaggaga agaaaatact gccaaacttg gttgggcaaa aattttaggt
      481 aatacgcaaa aaaaatatac aatagtatat atgaaactat gtgaataagc tgacacaaaa
      541 atatgtttaa aaaaatcaca acctctcttc acccataaac cataccctaa aataaacttt
      601 attttaccca ctttatgcta aaataaatca cataagctta taggctatta atcatcaaca
      661 aacccaaaag gatcatcaat gtcccttaat tcttacatga gtcttaatat atcaaattct
      721 acttcaaatc ccctaccctt taaaatcact aaagccctca tcaaagaaag tcttgaagag
      781 cttttttcta tagaatgtga aggctttttt gaaagtttag aacaagattt attttcttta
      841 aatactttaa ccaatgcttc atctcatcca agcaccccta caacttttaa ttttcatcct
      901 aatgttttaa tcgatcaaga agctatttta agtatccata atccttatga gaataatacc
      961 ttaaactttg ataacaatga agtaaaaaac tataagggaa ttatcactta tataaaatat
     1021 ctaggtatta atcatgaaag tgctttaaat attaatgata gcacttcaaa tactaagcaa
     1081 atacaataca agcatttttt ttcttttaag cttcaatcag tcttgataag actttcttta
     1141 aataaagcca atcgtattta tactcatact aatattatag aagtgattaa acaaaccctt
     1201 ggtttttatc aagatatctt acataaagaa attgattatt ctaatataca ttttaattat
     1261 gaagaacaag aactcatctc tcaatacaat gaaagtgatt tagactttat tacaagatta
     1321 agccataata atggaatctt tttttatgaa gatgagaaca ctatttattt ttgtgatgtg
     1381 tataaaaatg taaaaaataa agaaattgag tataatccta atgttaataa tattttaaat
     1441 caagcttgta tttcttctat ttataaagag caaagcttaa gaactaattc ttttacacat
     1501 tctagtatta atgccaatac tcctttaaat cttttatctt tacactctag taaagttcct
     1561 tatgaacaag aacttaataa caaagcttgt tataatgaac atttttatga gagtgaatat
     1621 tcttttacaa aaagcattga tttaaagact aagccttctc ttaaagaaaa aagagcctta
     1681 gtattaaatg aaagcttact agcaaaaagt aatatttatc atcttaactt aggagatttt
     1741 atcactttaa attataagga gtttaatcat caagaagaaa taaaaaatca agatgaagaa
     1801 aaacaagata aagcttcttt gcttaaagac tttattatta tcactaatac tcaaatctta
     1861 attgatgatg ccatcttagc taattctatt aatactaatg atcatttaaa tttaaaagat
     1921 ttaaatttaa ataaatctta ttctaatact ttaactttac taaaaaagaa tattatcttt
     1981 actccaagtt ttaaagctaa acctaaagct cctaatagca ctcaaggtat tgttatagga
     2041 gagagtaagg atatagaaag tgagagaaat actatttata ctgatgagca tggaagggtc
     2101 aaggtaagga ttaatcttta tgccaatcaa gaagaattag ataatgatac ttttattgca
     2161 aatgatatag atacaaattc ttctaattta tcaagcaata cttataaatc ttatcatcac
     2221 actccttttt taagagtagc ttctcatata gcaagcaatc attcaggttt ttttcatact
     2281 ccaagaatag gagatgaagt gattatttct tttttagatg atgatataga taaaccttat
     2341 gtaagtggaa gtttgtataa tggggctaca acaatgcccc aatataatta tccaagatat
     2401 aaaagagaaa tcgctacaaa tgcattgagt tatttaagcg tagttcctgc tatgattgat
     2461 aaaggtttag atacattaaa acttcaagaa aatactgatt atgaattaag ctctataaac
     2521 aatcattatc ttactttggc taattccaca gtaggagtgg ataacaccaa tgcaagagca
     2581 aggaatgaaa ttaccctaaa aaacgacaaa gacaaagaag aaatttatat cctagcacaa
     2641 aaagattata aagaagaaat aggtaataat tatgagcaaa ccataaaaaa taataaaact
     2701 tcagaagtgg gagccttata taccgaattt attactttag gacatatgca aaatatcata
     2761 ggttttaaaa atgtcaatgt aggagctgaa tatttagaaa ataccctact ttctaaagat
     2821 actaatgtgg gcttaagtaa tactttaaat gtaggaatca gcaatgaagt caatatcgga
     2881 caaaaccacg aagaaaagat aggaaacgac aaaagagtaa taatcaataa caatctagag
     2941 caagatatca aaaatgattt tatccaaaga ataggacata acaaaaatga aaccataaaa
     3001 ggttcttatg tgcttcaaac caatcaaagt ataaaatttt attccaaaca agatctaagc
     3061 atagaaacaa atgagtattt caaagctgaa gctgatgatt ctattagttt taaagccaag
     3121 aaaaattgct cttttacagc tgataatgta aatactatgg caaatcaaga aagtgtttta
     3181 acagcacaaa aacaaatcgt ttctagggta ggaaatacaa ctattacaca aacaaaagat
     3241 aaaattatac tacaagtagg aacaacacaa gtgattatag atagcaaagg tttaagagta
     3301 aaaggaggtg atttaagagc ggattaaaag caattttctt aaaattaaaa ctaaaatcat
     3361 aaaaaaccca atttacaaag aaaggaaaaa caatgaaaac cttagaagat atcaaagcta
     3421 tgagttacaa acaaaaagat gaattagaag atttagttct tgaaattata gatgataatg
     3481 atttagttaa gctaaaagat attttaaagg attatcctgt aaaaatatct tgttatgagc
     3541 ttaatattaa agatgaggat ggagactttc ctttatttga tccttttaat ctaataataa
     3601 gagctgcaca tgcttgtgaa gataataata atgatttttc tattttagac tatttatttg
     3661 atgagtatgg tttaagttta aaagatccta aatataactt tgcttttcat gatatgaaat
     3721 atatcaaaga agctagtgaa aaatacatct taatggaaga agtagaagat gatccttgta
     3781 tttatcaaaa cgctctaatt tatgattata tactcaatgc tgataatcca aattctcaaa
     3841 tcattaagta tctagtcaat cgtggagcta aatttgaagt gcatgatgaa ggatattccg
     3901 gtaggactcc tatgcatttt tgggctagac gcaataatta tgaattatta gaattagcta
     3961 ttaaaggagg agctaatgta gatatgcaaa ccttgcttga tccaaaaagc gaatacaatg
     4021 aaaccctttt atttgaagct gtaaaagaag cagaaaccta tagggttaca cagcttttaa
     4081 ttgaactagg agctaatgtg aattttgcta ccccaagaac tcctttagat gatacaaaag
     4141 gatctagaaa taaaaagctt ttaaaagatg caggagcaat gacttcagaa caaatcagaa
     4201 agaaatttaa tttaccagca tatgattctt ctcattgcga aattgacgga aaaactgata
     4261 tggatttatt aggtaaatat catgatgaat attccaaact tttaaacgat gctataaaaa
     4321 aggctaaaga aagtgaatga gggaatagaa attcactttg ctaaaataaa ttataaggaa
     4381 agataatgaa aaataaaaaa ttattggatg atgaatatat acaagaagtg tttaaatact
     4441 atcttaaaaa tgataattat ttaaaagatg ctttatatgg tttaaaaaaa tacgaacgaa
     4501 gagcttttat aagtagcatt ttaagctatg aatataaaaa tttagtagaa aatggcaatt
     4561 taaaagttga tgcaaaatat aaagttacct tgccgcctaa tcttattgct gttttagaat
     4621 atgataaaag tgaatttaat ggcgtaaatc ttcgaaattt tataaatgat ttggaatttg
     4681 aattagaaca tatagaaatg gaactttatg acgatcctgc tgactttgaa gggggagatt
     4741 attataatga agatagcgat tgtgatgaag attatacagt agaagattgg gtagaagatc
     4801 aagtaagtga tattaaagac tttttatatg ctttaaaaga ttttaaatga aacaaacatt
     4861 aagctctaat cgagtaagct tttatctttt ttctactaaa acttttagtg atgaaaaata
     4921 tcttaatgct tggagcttaa aaggcgagcg tttaaatgcc aaagattggt ttgaatttaa
     4981 acaagccaat aaagacaaat tttataataa gcatttagaa aataccttaa aaactatgca
     5041 agagtttaaa gcttatttta gtgttgatca atttgaaggc ataaatctac atggtgatga
     5101 tgaatggctt gattttttgc cttcaaatta tactcaattt tataatcgtt tatgcaggga
     5161 taaaagtaaa tatattttac atcgatatta tcaaaaaaat gatttgacag agattggtat
     5221 gcttaaaaat ctttctccta attttccttt ttgggatgaa aaaggagaaa atttttctca
     5281 aaatcaaatt gatattttta tagaaaaaga taatttagca ccctgcttta ataaatatga
     5341 tatttatttt aattcttcac ttgagctaag ctttaatttt agtgatgaaa gcttagaata
     5401 tttaattaac aattataatc acagaatcaa tcatactttt actccaaaaa gtcaagatga
     5461 gatacaaaaa gaattaaatt taagcaaaga agataaaatc attttagaac ttgaaaatat
     5521 gtttttaaat ctttgtaaag gaatcagtgc tgattatgct tttatggatt tttcttattt
     5581 ttttgtagga tatgatcata ctttagattc taaaaataat actttaaaat cttatcccat
     5641 taatcaagat aaattaattc ataaaagaag ttttaaagaa tatatagaag aatacgcaaa
     5701 tacttacttt ttaaattatt attctaaaga gtttttaaat gaacttgaca atcaagaatt
     5761 aaacaaagat agacttaatt attatcttat taattacaac aaaattccaa aaaacacaga
     5821 agaagaaaac atacaaggca tactttctaa acaaaaagat atagatatca attttgtaaa
     5881 ttttatagat tataaagact atgtttataa aaataaagat gatttttggg agttttcagc
     5941 aaaagaaaat tctatacttt gggaaaaatt tctaagtaaa aataccctaa aaccttttcc
     6001 tttaaatttt gattgctctt tagaagaaaa gcttctttat gctaaagatg aacaactaga
     6061 aaacatactt aaaacccaca agacttttca tggctaaaaa aagaacaatc cttattccta
     6121 gaataaaaga tattaatata agtcctgata cttcttgtat gcatcctatc ttagaagata
     6181 atactttagt atgcttacat ggaggtagag ttaagttaaa agcaaaaaaa gctaaaagaa
     6241 taaaatcaga caatgttcct attatgcttg ataatgaaat acaaggagct agtataagtg
     6301 gatgtttaaa tccacctata ctaggaggac cttgtactaa agtagctatg gtatttgctt
     6361 atacttattc agatcataaa gttaataata aacattctgt attacaaatg ggtttgatag
     6421 gaatgagtat aaaaggttat cctatatttg ctatacccaa aaagaataag attaaatttg
     6481 ctttagctaa aatacaagct agtcctcttg ctaagattga gtatgatagg ataagatggg
     6541 aagggatggg agatgataac aaacaatcat caattcaaac ccatcatatt gccactgata
     6601 agaataaaaa atttactaaa gaatttcgaa aaataacaaa aaaatataac atggaattgg
     6661 atgaagactg gaataaagtt aaaatgccac atcgcggaag acatcctaat gaatatcatg
     6721 aatatattct tgaaaaaatg agtaaaattg ataaaatagc aagaggagat aaggataaat
     6781 tcataaaaga atttgaaaaa ctaaaagaag aagtcaaaaa caatcctgct atacttcata
     6841 aagattacta taaggagaga aaataatgaa atattataaa atgatgtata actataatca
     6901 taacgatgtg gataattggt actcttgtga tcttgtagat ataaaaaata acgatgaata
     6961 tgcactttta gaatccaaac ctatcacaaa ttggcaaaca cctagttttg aaatcgacaa
     7021 agatgatggt aatatactga ctgatcttat acacaatgac tgtggttggc gtatagtctc
     7081 tcctaaattt ataaatttaa tgcaagattt aatcaaagat tgtgtgcaat atttagatgt
     7141 agaaattaaa agtcaggaaa taaattatta tggttgtaaa attatgcatg taacaaaatc
     7201 acttgaggct ttagattatg aacattctgt atatacttat atgggtgata atgatgaata
     7261 tttaagtatt actaaagctg ttttaaaaaa atcaaaactt gatggaagcc atatatttag
     7321 aattaaagat gatgaagtac ctgtttttgt atcaagtgaa tttagaaaaa tagtaagaga
     7381 aaacaattta ttaggtttta gttttagtga agttatggta tatgaaaatt gaaagactaa
     7441 aagctataaa aaattttgca atttaatata aaaagatttt tagttataat ttcattttat
     7501 atttaaggaa aaatttatgg aagatttaaa acttttacaa agacgttggg aagaagctta
     7561 tgaagctatg cctaaacttt atgaaacacc agatgggtta ataataaatt tcaccctaag
     7621 tgaagataca gatactattc tttttaaaaa accttgggaa aattttgaac t
//
LOCUS       DAPIWV010000079         7590 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.080, whole genome shotgun sequence.
ACCESSION   DAPIWV010000079 DAPIWV010000000
VERSION     DAPIWV010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7590
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.080"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            62..697
                     /locus_tag="RJ272_001281"
     CDS             62..697
                     /locus_tag="RJ272_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7382348.1"
                     /translation="MKIAILCASGKVGKEISKEALKRNLEPVCFVRNSSKMNEFLPQA
                     KIVQRDLFELDSKDLIDFDIIIDAFGEWENLSLHKKHIECLSVILQGSKAKLFVVGGA
                     GSLYMDENHTTRLMDMPDFPKEYLDIAKASAEVLEFLRNEKGFKWVYVSPSAIFSPDL
                     PKSNHYKIIGEKFEVNANNESKISYSDYASAMIDIVLNSCYENTRIGVISL"
     gene            872..2047
                     /locus_tag="RJ272_001282"
     CDS             872..2047
                     /locus_tag="RJ272_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382349.1"
                     /translation="MKNLNKASSTQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCASIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVSEFWQL
                     LILRAIPAFFHPIYIALALSMVANLVEDKKEIPKATAKIFAAVSAGMVLGVPMTSYFG
                     GNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWISILCVI
                     CINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKNANFTL
                     ILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTHFMISYPFPKAANFSNG
                     LFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGIIMIFVRSRIEKMKLRF"
     gene            2105..2524
                     /locus_tag="RJ272_001283"
     CDS             2105..2524
                     /locus_tag="RJ272_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDV7382350.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGAHIALTGEKEGKNVEWLELVSDEEYENALKEARE"
     gene            2631..3383
                     /locus_tag="RJ272_001284"
     CDS             2631..3383
                     /locus_tag="RJ272_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDV7382351.1"
                     /translation="MQLRQKAREIFEKLLGAKKDQLFASDKEYFINHINFTFDESFIK
                     ANLDTQKYFLITLASTLAVGGKIGFKALLQGAIKNDISPIVIKEVIYQATPYVGFARV
                     CDFLSLCNKVFKKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPED
                     KAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQS
                     RKDLLNIIAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(3461..4945)
                     /locus_tag="RJ272_001285"
     CDS             complement(3461..4945)
                     /locus_tag="RJ272_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7382352.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNDDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     NRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFMSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQKYLNELKSILK"
     gene            complement(5093..6304)
                     /locus_tag="RJ272_001286"
     CDS             complement(5093..6304)
                     /locus_tag="RJ272_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7382353.1"
                     /translation="MSNLPQGWEVKTLSEIGEIVTGSTPSKSNLDFYGKDYPFFKPSD
                     FEQGYFLENAGDNLSKLGFDKARQLPPKTILVVCIGSLGKVALTKVIGSCNQQINAII
                     PHKNIISEYIYYYCISSKFQSILFSKAPQTTLAILNKTEFSKLEIIYPKDIKEQERIV
                     GILDFAFSKIDENIKKAKENLANIDELMQSALQKAFNPLNDNTKENYQLPQSWEWKSL
                     GDTSNYGKTSQVKPSQLKGNDWILELEDIEKESGVLLQKVLFQDRQSKSNKIKFNKGD
                     ILFGTLRPYLKKVIIADDNGACSSEIMPFSTGNSITNHFIYYYLFANFLHDRISSLTY
                     GARMPRLGTKDGKSLQIPLPPLQEQEQIAEHLDFVFEKAKALKELYTKELKDYEELKQ
                     SLLDKAFKGEL"
     gene            complement(6304..>7590)
                     /locus_tag="RJ272_001287"
     CDS             complement(6304..>7590)
                     /locus_tag="RJ272_001287"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015210.1,HMM:NF019151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1524 domain-containing protein"
                     /protein_id="HDV7382354.1"
                     /translation="TLKIVPKLTLNKTNNNFFTTYIINQNIPDKPTLADADKSNLLLH
                     KAFDFFQKKIKEKFQEEDGKKIAEYVEMIGEQLKFIVIIVQNELDAYVLFQTLNARGA
                     ELTAADLLKNYFLSLLKNDSEALEQANSIWEDINNKISTEKIPDFLRSVVNFQTDLVT
                     KNRLFKEVRKNIKTSEEAFSFISKLHNLSSLYLALQNSNHNSWNEFSQKDAKYYINIL
                     ELLRFKSSLPLLLIAKEKIINDQEFTKILKACAVLSIRYSISKTRTNKLESNYNKIAC
                     NIFYDKYKNANEIIKALKLIDIDDNDFKKSFSIYSKKATSGNDEKIVKFLLFNIERHL
                     SGGICDEQIATIEHILPSSLNDEKVHKLGNYILLEAKYNQQLKNKNFKEKIDIYSKSN
                     FKLAQYVAENFKTWDTKSIDQYQNFLAKQALALWKF"
BASE COUNT         2529 a         1068 c         1102 g         2891 t
ORIGIN      
        1 aaatatattt ataatttcta gattgcattt tttatgtaaa aatacttaaa aaggagatat
       61 tatgaaaata gcaattttat gtgcaagcgg taaagtaggc aaagaaatca gcaaagaagc
      121 tttaaaaaga aatttagagc cagtatgttt tgtacgcaat agctctaaaa tgaatgaatt
      181 tttacctcaa gctaaaatag tacaaagaga tctttttgaa cttgattcta aagatctgat
      241 agattttgat attattattg acgcttttgg agaatgggaa aatttaagct tacataaaaa
      301 gcatatagaa tgcttgagtg taattttaca aggaagtaag gctaaattat ttgttgtagg
      361 gggtgctgga agtttgtata tggatgagaa tcatactaca agacttatgg atatgcctga
      421 ttttcctaaa gagtatttgg atatagctaa agcaagtgcg gaagtattgg aatttttacg
      481 caatgaaaaa ggttttaaat gggtatatgt gagcccatct gctatttttt caccagatct
      541 tccaaaaagc aatcattata aaatcatagg cgaaaaattt gaagtgaatg ccaacaatga
      601 aagtaaaatc agctatagtg attatgctag tgctatgata gacatagtgc ttaattcttg
      661 ctatgaaaac acacgcattg gggtaataag cctataaata aagatgcctt atgcttttaa
      721 ggcatctttt atttctttta aatacttatt ttgaagtttc aaatttttct aaagatttta
      781 tttaatatag ataaatattt ttattttagg ttattgactt agacctactc tcatctttta
      841 tacttttaaa aatattaatt gaaaggataa aatgaaaaat ttaaataaag cttcaagtac
      901 tcaaattatt ctagtatttt gtttaggggt atttgggatt ttgagcacag aactagggat
      961 gatgggtata attcctattg tttctcaaaa tttcagtgta agtatttcag atgcgggttg
     1021 gtgtgcgagt atttttgcac tcgtgataac tttttgcgcc cctattgtcc ccctgctttg
     1081 tgcaaatttc aatcctaaaa aacttatgct tatttgttta gctgtgttta tcttaagctc
     1141 gttaacttct gcttttgtga gtgaattttg gcaattgctt attttaagag ctattcctgc
     1201 tttttttcat cctatttata tagctcttgc tctaagtatg gttgcaaatt tggtcgaaga
     1261 taagaaagaa attccaaaag ctacagctaa gatttttgca gcagttagtg ctggaatggt
     1321 tttgggtgta cctatgacta gttattttgg tggaaatttt agttttaaaa tggcaatgtt
     1381 attttttgta tttttaaata ccttatcttt tatagcaact ttattttttg ttcctgattt
     1441 taaaaaagta aattctgtaa aaataagcaa acaattgctt attttaagat acccactttt
     1501 atggattagc atactttgtg ttatttgtat aaatgctgga atttggggtt tttactctta
     1561 tttttctgat ttcttacata gtgtaggaaa gatgaatttt actttaatta gtattgtatt
     1621 ggctatttat ggtttttcaa atattatagg caattatata gccggaaaga cccttgttaa
     1681 aaacgcaaat tttactttga ttttaacacc tttaattatg ataggatttt atattttact
     1741 ttttagtttt tatagtgaaa ttatacttat aatatttgcc tttatattag gaattttagc
     1801 aggtgtgatg aataacggca cgcattttat gataagttat ccctttccaa aggctgctaa
     1861 ttttagcaat ggacttttta taagcgtggc caatatagga ttaagcaccg gaactgctat
     1921 ttgtggactt gtgatttctt tgagtgatac gcgttatatt atcgtaaata ctattgtttt
     1981 gttgatttta ggaattatca tgatttttgt aagaagtagg atagaaaaaa tgaaattaag
     2041 attttaaatt tttacttgac ttagagtagc tctcatgttt tataatacta aaaaaggagg
     2101 taaaatgcaa gaattagaaa aagcaggaat tcatggaagt tttaaaggtg atagtaaatt
     2161 ttttagcaaa aatgtaaaag tttctatgat gtttaaatca aatgagtgga gaaattttag
     2221 cggggctttg gttgaatttg aagccagtgc tagaagtgcg tggcatactc atcctcaagg
     2281 acaaacctta atcgtaacag aaggcgaaat tatcacaaaa gttccaggcc aaaaagcctt
     2341 tatagctaaa aaaggcgatg tgataagctg tcctatagga gtaaagcatt ttcatggtgc
     2401 aactaataca agtagtggag cacacatagc acttacaggc gaaaaagaag gtaaaaatgt
     2461 agaatggctt gagcttgtaa gcgatgaaga atatgaaaat gccttaaaag aagcaagaga
     2521 gtaaagaaat ttgtaaataa aacacaaaaa ttttataaaa acttttatgt ttttggagta
     2581 ttttaaatgc tcttttttca caaattttaa aaaccacaaa ggataaaacc atgcaattaa
     2641 gacaaaaagc aagagaaatt tttgaaaaac tcttaggagc aaaaaaggat caactttttg
     2701 caagtgataa agagtatttt atcaatcata taaattttac ttttgatgag agctttataa
     2761 aagcaaattt ggatacacaa aaatattttt taatcactct tgcttctact ttagcagtag
     2821 gtggaaaaat agggtttaaa gctttacttc aaggtgcaat caagaacgat ataagtccta
     2881 ttgtcattaa agaagtgatt tatcaagcta ccccttatgt gggttttgct agagtatgtg
     2941 attttttaag cctttgcaat aaagtgttta aaaaactaaa tatcgcctta gttttaactc
     3001 cacaaggtac tactacgcaa gaaaatcgca aaataaaagg tagggaaata caaaatgcta
     3061 tttttagtga agccaatatc actaaaatga tagaaactac accagaagat aaagctttta
     3121 taaatgattt tttgagtgcg aattgttttg gagactacta tacacgcatg ggacttgatc
     3181 taaaaactag agagctttta acccttgtat atcttatctc acttggtggg ctagacaatc
     3241 aagtaaaagc tcacatacaa ggcaatctta acatggggca aagtagaaaa gatttgctaa
     3301 atatcattgc agctcttatt ccatatatcg gttatccaaa agctttaaat gccctaaatt
     3361 tgcttgatga tattaaaaag tagaatgcaa gcaatgaata tttattgtaa attgagctta
     3421 gaagttattt gtaaattagt ttttatcaaa aaacttgcaa tcattttagt atgcttttaa
     3481 gctcatttaa atatttttgt tgtgttttta gattttcttc taaagaattt aaaatctctt
     3541 cgctagttct taggattttt tcttctttta catttggatt tttagcactt agatcatagt
     3601 ttctttcttc aagctctttt ttgctaacaa gccaagaatt agcagtgatt tttctttctt
     3661 tgtagcattt tagaaattct ttaaaatgtg cgtattctaa aggcttattt ttagtaagtt
     3721 tataaggcgg tataagttcg tagtaataaa ctccatcgcc ttcacaaata cattttttac
     3781 ctttagagaa aaaaagcaca ttagtcttaa cagcactata aggcaaaaat accccacttg
     3841 gcaaactcaa aacgcattct aaattaaaat catctagtaa atcttttttt acactcataa
     3901 aggcatttga attttgaaaa agcacacctt caggcacgat gatcgcacat cttccgttgt
     3961 tttttaaaga ttttaaaatg tgttgcaaaa acaaaagttc agtagcgttt gattttatag
     4021 gaaaattttc ttgaatttgt tctttttctt tacctccaaa aggtggattt gcaagtatta
     4081 cttcgtattt atctttttct gttatatctg taattttttt acttaaagta tttgttttta
     4141 tgatatttgg acttgaaatt tcatgtaata tcatattcat aacgcccatt gcatagctaa
     4201 gaggagtttt ttctttacca aaaagagcat cattttttaa aaattcaagc tcttctacgc
     4261 ttaaatttgc ttttttgcct ttggttctgt ttttatataa aatatgtaaa aaactctcaa
     4321 ctaaaaatcc acaactacca caagaaggat cataaattct ttcttttggt ttaggatcta
     4381 ttacttccac catagtcttt atcaaaggac gaggggtgta aaattctcca ctatttccac
     4441 catcgctacc catatctttt aaaagttttt cataaacttc acctaaggca aatacttcat
     4501 cttctttatt aaaactaatc tcatcaatga tatttatcac ttctcttaaa gtatgtccat
     4561 ttgctatgcg attgtctata aattcaaaaa ttccaccgat tttatactct atacttttaa
     4621 aatcatcatc atttttaaaa tttttaagat aaggaaaaag ctctttattt acgaattcaa
     4681 gcaaatccga tccacttaaa gcatttttta catcaagttt gccatctttt ttaggcgctg
     4741 cccaaacact ccagctaaat ttttcttgca aaatgctttt ataatctttg ccatctaaaa
     4801 acgctaaatc ttttaaattt gtctcataat catctaaaaa ttttaaaaaa agtatccagc
     4861 caatctgctc tgtatagtgc atagcaccac ttatgccatc atctcttctt agaatatctg
     4921 tgattttatc gattttattt tgcattttct ccctttaaag cttttaaaat agttttatca
     4981 aagtttagtt ttatttttgt atatttttgt ttttgaactg caatatgtta aaaaaatcaa
     5041 aaatttttaa catatcaagc caatgtgtta aaatttggca aattttttaa cattataatt
     5101 ctcccttaaa agctttatca agtaaggatt gcttaagctc ttcataatct tttagttctt
     5161 tagtgtaaag ctcttttaaa gcctttgcct tttcaaacac aaaatctaaa tgctctgcga
     5221 tttgctcttg ctcttgtaaa ggtggtaggg ggatttgtag ggatttgcca tcttttgttc
     5281 caagtctagg cattcttgca ccataggtta aacttgagat tctatcgtgc aaaaaattgg
     5341 caaataaata ataataaata aaatgatttg ttatggaatt acccgtagaa aatggcatta
     5401 tttcagaaga gcaagcccca ttatcatcag ctataatcac ttttttaaga tatggacgca
     5461 atgttccaaa taaaatatca cccttgttaa atttaatttt attgctttta ctttgtctat
     5521 cctgaaataa cactttttgc aacaaaacac cgctttcttt ttctatatct tcaagttcta
     5581 aaatccaatc attacctttt aattgactag gttttacttg tgatgttttt ccatagttgc
     5641 tagtatcccc taagcttttc cattcccaag attgtgggag ttgataattt tctttagtat
     5701 tatcattaag tggattaaaa gccttttgta aagcactttg cataagctca tcaatatttg
     5761 ctaaattttc ttttgctttt ttgatatttt catcaatctt actaaaagca aaatccaaaa
     5821 tccccactat cctttcttgc tcttttatgt cttttggata aataatttcg agtttggaaa
     5881 attcagtctt atttaaaata gctaaagttg tttgtggtgc ttttgaaaat aatatagact
     5941 gaaatttaga agatatgcaa taataataaa tatactcgga aattatattt ttatgaggaa
     6001 taattgcgtt tatttgttgg ttacaacttc caataacttt agttagtgct actttaccca
     6061 aagaacctat acaaaccaca agaattgttt taggcggaag ctgtctagct ttatcaaagc
     6121 ctagttttga tagattatct ccagcatttt ctaaaaaata tccttgctcg aaatcactcg
     6181 gcttaaaaaa tggataatct tttccataaa aatctaaatt acttttacta ggtgttgaac
     6241 ccgtaacaat ttcacctatc tcgctaagcg ttttaacttc ccaaccctgc ggtaaatttg
     6301 acattaaaat ttccacagag ctaaagcttg tttagctaaa aaattttgat attgatcaat
     6361 gctttttgta tcccaagttt taaaattttc tgctacatat tgtgctaatt taaaattaga
     6421 tttactatat atatcaatct tttctttaaa atttttattt tttagttgtt gattatattt
     6481 tgcttccaat aaaatataat ttcctaattt atgaactttt tcatcattta aagaagatgg
     6541 aagtatatgc tctattgttg caatttgttc atcgcaaata cctcctgata aatgtctttc
     6601 aatattgaaa agtaaaaatt taactatttt ttcatcattt ccagaagttg cttttttgga
     6661 gtatatagaa aaagattttt taaaatcatt atcatcaata tcaattaatt ttaatgcttt
     6721 tataatttca tttgcatttt tatatttgtc ataaaatata ttacaagcaa ttttattata
     6781 attagactct agtttattag ttctggtttt tgaaatagaa tatcgaatgg acaatacagc
     6841 acaagctttt aaaatttttg taaattcttg atcgtttatt attttttctt tagcaattag
     6901 caacaatggt aaagatgatt taaatctcaa taattctaaa atattaatat aatatttggc
     6961 atctttctgc gaaaattcat tccaagaatt gtgatttgaa ttttgcaagg caagatataa
     7021 agaagataaa ttatgaagtt tagatataaa actaaaagct tcttctgaag ttttaatatt
     7081 tttcctaacc tccttaaaaa gtctattttt tgtaactaaa tctgtttgaa aatttacaac
     7141 gcttcttaaa aaatctggta ttttttctgt tgaaatttta ttatttatat cttcccatat
     7201 tgaattagct tgttccaaag cctcagaatc attttttaat aaacttaaaa aataattttt
     7261 caataaatct gcagctgtta attcagctcc tctagcattt aaagtttgaa ataaaacata
     7321 agcatctagc tcattttgga ctataatcac aataaatttt aattgctccc ctatcatttc
     7381 tacatattct gcgattttct ttccatcttc ttcttgaaat ttttctttaa ttttcttttg
     7441 aaaaaaatca aatgctttat gtaataaaag attagattta tctgcatctg ctaaggttgg
     7501 tttatctgga atattttgat taataatata ggtagtaaaa aaattattat tggttttatt
     7561 taaagtaagt tttggaacta tttttaatgt
//
LOCUS       DAPIWV010000080         7505 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.081, whole genome shotgun sequence.
ACCESSION   DAPIWV010000080 DAPIWV010000000
VERSION     DAPIWV010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7505
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.081"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            143..871
                     /locus_tag="RJ272_001288"
     CDS             143..871
                     /locus_tag="RJ272_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7382355.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            893..1672
                     /gene="peb1A"
                     /locus_tag="RJ272_001289"
     CDS             893..1672
                     /gene="peb1A"
                     /locus_tag="RJ272_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HDV7382356.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1674..2426
                     /locus_tag="RJ272_001290"
     CDS             1674..2426
                     /locus_tag="RJ272_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7382357.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2437..3096
                     /locus_tag="RJ272_001291"
     CDS             2437..3096
                     /locus_tag="RJ272_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7382358.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3204..4133
                     /locus_tag="RJ272_001292"
     CDS             3204..4133
                     /locus_tag="RJ272_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDV7382359.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4300..6411
                     /locus_tag="RJ272_001293"
     CDS             4300..6411
                     /locus_tag="RJ272_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDV7382360.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPILAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKVANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISVIKKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6392..6589
                     /gene="kcuS"
                     /locus_tag="RJ272_001294"
     CDS             6392..6589
                     /gene="kcuS"
                     /locus_tag="RJ272_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HDV7382361.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(6629..7042)
                     /locus_tag="RJ272_001295"
     CDS             complement(6629..7042)
                     /locus_tag="RJ272_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7382362.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            7104..>7505
                     /locus_tag="RJ272_001296"
     CDS             7104..>7505
                     /locus_tag="RJ272_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382363.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEI"
BASE COUNT         2461 a          950 c         1429 g         2665 t
ORIGIN      
        1 gtataaattc taaaaattac taaaagttac actttggaaa tttattagta aaaataagtt
       61 acattttgaa gtagttttct ttatttaatg ataaaataat ttcaattaat tttatattta
      121 gttaaaaata caaggaaaaa acttgattga attaaaaaat gtaaacaaat actacggaac
      181 tcatcatgtt ctaaagaata ttaatctttc tgttaaagaa ggtgagaagc ttgttattat
      241 aggtccaagt ggaagtggaa aaagtacaac tatccgttgc atgaatgggc ttgaagaagt
      301 tagttcagga gaggtcgtag ttaacaatct tgttttaaat cataaaaata aaattgaaat
      361 ttgccgaaaa tattgtgcaa tggtttttca gcattttaat ttatatccac atatgacggt
      421 tttgcaaaat ttgaccttag ctccaatgaa acttcaaaaa aaatctaaaa aagaagctga
      481 agaaacagct tttaagtatt taaaagttgt aggtttgctg gataaagcaa atgtttatcc
      541 agcaaccctt tcaggtggac aacaacaacg cgttgctata gcaagatcac tttgtactaa
      601 aaaaccctat attttatttg atgaacctac ttcagccctt gatccagaaa ccatacaaga
      661 ggttttagat gtaatgaaag aaatttcaca tcaaagcaat actaccatgg tggttgttac
      721 acacgaaatg ggttttgcaa aagaagtagc agataggatt atttttatgg aagatggtgc
      781 tattgtggaa gaaaatattc ctagtgaatt tttctcaaat ccaaaaactg aaagagcgcg
      841 actcttttta gggaaaattc ttaaaaatta accaaaattg aaaggagaaa aaatggtttt
      901 tagaaaatct ttgttaaagt tggcagtttt tgctctaggt gcttgtgttg catttagcaa
      961 tgctaatgca gcagaaggta agcttgagtc tattaaatct aaaggacaat taatagttgg
     1021 tgttaaaaat gatgttccgc attatgcttt acttgatcaa gcaacaggtg aaattaaagg
     1081 tttcgaagta gatgttgcca aattgctagc taaaagtata ttgggtgatg ataaaaaaat
     1141 aaaactagtt gcagttaatg ctaaaacaag aggccctttg cttgataatg gtagtgtaga
     1201 tgcagtgata gcaactttta ctattactcc agagagaaaa agaatttata atttctcaga
     1261 accttattat caagatgcta tagggctttt ggttttaaaa gaaaaaaaat ataaatcttt
     1321 agctgatatg aaaggtgcaa atattggagt ggctcaagct gcaactacaa aaaaagctat
     1381 aggtgaagct gctaaaaaaa ttggcattga tgttaaattt agtgaatttc ctgattatcc
     1441 aagtataaaa gctgctttag atgctaaaag agttgatgcg ttttctgtag acaaatcaat
     1501 attgttaggt tatgtggatg ataaaagtga aattttgcca gatagttttg aaccacaaag
     1561 ttatggtatt gtaaccaaaa aagatgatcc agcttttgca aaatatgttg atgattttgt
     1621 aaaagaacat aaaaatgaaa ttgatgcttt agcgaaaaaa tggggtttat aatatgaatg
     1681 aaagtgtagg ttttgttgaa catttaagac aaattcttac ttcttggggt ttatatgatg
     1741 aaaatagtat aagccctttt gcggtatgga aatttttaga tgctttggat aataaagatg
     1801 cttttattaa tggttttatt tatactttag aagtaagcat tcttgctttg cttatagcta
     1861 caatttttgg aactataggc ggagttatgg ctacaagtag atttaaaatt atcagagcct
     1921 acactagaat ttacgtagag ctttttcaaa atgttccttt ggtaatacaa attttctttt
     1981 tgttttatgc cttacctgtt ttaggtataa ggcttgatat atttactatt ggtgtattgg
     2041 gtgttggggc gtatcacgga gcttatgtaa gcgaggtggt tagaagtgga attttggctg
     2101 tgccaagagg tcagtttgaa gcttctgcgt ctcaagggtt tacttatatt caacaaatgc
     2161 gttatattat agtacctcaa accattagaa ttattttacc gccgatgaca aatcaaatgg
     2221 taaatttaat taaaaatacc tctgtattgc ttattgtagg tggagctgag ttaatgcatt
     2281 ctgctgatag ttatgcagct gattatggaa attatgcgcc ggcttatata tttgcagcgg
     2341 ttttatattt tataatttgc tatcctttgg cttattttgc aaaagcttat gaaaataaat
     2401 taaaaaaagc acatttaacg agataaaggg ttgttaatgg aaaatgtttt taatgcacaa
     2461 aatattgaat ttttaatgca aggtttattt ctgacattaa aaatagcctt agcaacttgt
     2521 attatttcga ttgtttttgg aactttttta gctataacta aaaattatgg ggatagatta
     2581 agtaaatttt tagcagcttg ctatatagat atttttagaa atactccttt attattatgg
     2641 atgcttgcag cttgttttgt tctacctgta ttttttggac aatttcctca agctttttgg
     2701 ggtactatag gattttcact ttatacgagt tcggttatgg ctgaaattat tagaggtgga
     2761 ttaaattcta taccaaaagg tcagtttgaa gcagcttatt ctcaaggttt tggtaaattt
     2821 tttactcttt tttatattat tttaccacaa acttttagaa aaataatacc tgctttatta
     2881 tctcaaattg taaccactgt aaaggataca gcttatttag cgggtttagg tatagctgaa
     2941 cttacttata attcaaaaac tatattggca aaactaacaa gttttgaaga aattttagcg
     3001 atgataggtg ttgttgcggg aatttatttt ataatatgtt tttcactttc tatgttggta
     3061 agatattatg ccaaaaagac agcttacatt tcttaaaaaa gcttatattt ttatataagc
     3121 tttttaaatt tacagcagtt tttaacattt tttttattaa aatcttttgt attaattcat
     3181 aattttattg attaaggttt tttatgcgag gttataaaat tttttcaggc tcagctaatg
     3241 tcgaatttgc aagacaagtt tctaaatatc tctccctgcc tttaagtgat gctggagtaa
     3301 agcggtttag tgatggagag attagtgttc aaattgatga gagtgtacgc ggaaaggatg
     3361 tttttattat tcaaagtact tgcgctccta caaacgataa tttaatggaa cttttaattc
     3421 ttacagatgc tttgcgtcgc tcaagtgcaa attcaattac ggctattatc ccatattttg
     3481 gctatgcgag acaagataga aaagcaaatc ctagagtgcc aattactgct aaacttgtgg
     3541 ctaatttgat tcaagcagct gggattgatc gcgtagctac gatagatttg catgcaggac
     3601 aaattcaggg tttttttgat attccagtag ataatcttta tggaagtata gtttttaatg
     3661 attacattaa agccaaacat tttaaaaatg ctattatagg aagtccagat atagggggtg
     3721 ttgcaagagc taggagtgtt gcaaagcatt taggacttga tatagttata gttgataagc
     3781 gtcgtgaaaa agccaatgaa agtgaagtaa tgaatattat tggagatgta aaagataaag
     3841 aagttatctt agtggatgat attattgata ctgctggcac tatagttaaa gccgcggaag
     3901 ctttaaaaga aaaaggtgca aaatctgtta tggcttgctg tactcatgca gttttaagtg
     3961 gaaaagccta tgagagaata gcaagtggag ttttagatga gcttgtggta acagatacta
     4021 tacctttaaa agagcaatta ccaaatatta aagtattaag cgttacacct gtttttgctg
     4081 aagtaatacg tcgtgtttat cataacgaaa gtgtaaattc tctctttatt tagattaaaa
     4141 aagcttaaag attattttta agcttttcat ttttatgcta cttaaagaaa caaaaaacat
     4201 atattttttt aaaaatgtga aaaaactaaa catctttcta tataatttaa tctataaatc
     4261 tgctattctt tgaaaatatt ttattttctt aggagaaata tgactcagtt aagtactaaa
     4321 attttatggt tgtttgttgc aactttaggc gctatttgtt ttggttattt agctttacaa
     4381 aatggcgaaa gtgtatcagc gatttatttg gtggttgctg ctgtatgtat ttatatgata
     4441 ggatatagat tttatgggcg ttttgtagct tataaggttt tagaacttga taaaaatcgt
     4501 gcaacaccag cacttgtaga aaatgatggg cgtgattttg tgcctacaaa taaagctgta
     4561 ttatttggac atcattttgc tgctattgca ggagcaggtc cattagtagg acctatcttg
     4621 gccgctcaaa tgggatattt gccttctatg ctttggattt tagtaggagg agttttagcg
     4681 ggtgctgtgc atgattttgt tgttcttttt atatctactc gtagaaaagg tagaagtctt
     4741 ggcgagatga ttaaggatga gatgggtaaa tttacaggtg gagttgctat ggtggcgatt
     4801 tttggcatta tgcttattat tattgccatt ttagctatgg tggttgtaaa agctttagca
     4861 gaatctccat ggggtttatt tactatcgca atgactattc ctatagcaat atttatgggc
     4921 atttatatgc gttttatccg tccaggtaga gtaggggagg cttctataat aggttttgtg
     4981 cttttaattt tggctattca ttatggtagc gttatagctg ctgatcctta ttgggctaaa
     5041 atatttactt tagaagctcc aattttggca attgttatga tggcttatgg ttttattgct
     5101 tctgttttac ctgtgtggtt tttacttgct ccaagagatt atctttcaac ttttttgaaa
     5161 atcggtgtta ttgtggtaat ggctgtagct attgttttgg ttgctcctga tttacaaatg
     5221 ccaaaagcaa atactcagta ttttgatgga acaggtccag tatttgcagg tggagtgttt
     5281 ccatttttat ttattaccat tgcttgtggt gcgatcagtg gttttcatgc tttgatttct
     5341 agtggaacta ctcctaaaat gcttgaaaac gaaactcatg ctttggctgt tggatatggc
     5401 tctatgcttg ctgagagtgc tgtggcgatt atggctttaa tttgtgcttg tattttacat
     5461 ccaggtcttt attttgctat aaattcaagc tctgctttga taggaacaga tgttgtaaat
     5521 gtagcacaaa ctatttcaag ttggggattt agtattactc ctgaagaaat tactacttta
     5581 accacaaata taggagagca tactatactt tcaagaacag ggggagcccc gacttttgct
     5641 ataggtgtag ctttgatctt acatgaactt tttggcggcg tggatttgat ggctttttgg
     5701 tatcattttg ctatattgtt tgaagcttta tttattttaa cagcggtgga tgctgggaca
     5761 agggcttgtc gttttatggt gcaagatata ttgggtaatg tttataaacc tttaggagat
     5821 attcataatt atccagctgg acttttggct acggctttaa gtgttgcagg ttggggatat
     5881 tttctttatc aaggtgccat tgatcctaag ggaggaattt atacgctttg gcctcttttt
     5941 ggcgtgagta atcaaatgct tgcgggtatg gctttacttc ttgctacaac tatacttgta
     6001 aaaatgggca aggcaagata tacttgggtt actttagtac ctgcggtatt tgtcttagtg
     6061 gcaactctgt atggaggaat tcaaaaaatt atgccttatg aagaaggcaa taaagtagca
     6121 aatgcggtaa gtcatgtagc cgccgttagc atacaaagtc aaaaaattaa agatttagaa
     6181 tttaaattaa ataatactaa agatgaaaaa gaaatttctg taattaaaaa agaaatttca
     6241 atagccactc aaaataaagt tggaaattta cttaatgcaa ttctttgtgt gttctttatg
     6301 atagctacct tgcttgttat aatttcttgt ataggaattt gcttaggtaa aattaaaatt
     6361 cctcttaaag aaactaagta tattaagatt gatgaatttc aaaaaattta agtattatta
     6421 tgaaaaagcc gaaaggtttt ttcatccctt ggtgggactt tctagttatg ataagtattt
     6481 agaacacatg aaacaaaaac atccaggaaa aattccaaaa accagagggg aatttttcaa
     6541 agaatgtcta gataaaaaat ataatagtgg cggtttaaat aaatgctgat aagcttaaag
     6601 gataaagttt tatcatacaa aataagcttt aagcatttaa aaagccatga attcttttaa
     6661 gttcttcact aataggcttt ttctttccat ctcttgtaac acttacataa gttactaaag
     6721 ccgaagttac attaatgcaa gaagtacaac cttgagaatc cactctttga gctgtgactt
     6781 ctacttcaac gctgattgaa gtgttgccca catttacaac tttagagtaa caagaaatta
     6841 tatcgcctat aaaaacaggt tctttaaaaa ctactttatc catagagatg gttacaacgc
     6901 gttcaggaga aagttctctt gctgcgatag ctcctgctaa atcgatttgt gaaagtatcc
     6961 atccgccaaa aatatttcct gctggatttg tgtcacttgg catagctaca atttttaatt
     7021 ttggttctcc catatctctc atttttactc cttattttaa aaaatgaatt ataattaaaa
     7081 aagttaaaaa ggagaataaa agtatgaata attttaaaga aatagctaaa ttggttagaa
     7141 aatacaaaga aagaaataat gcgttatatg agtttttaga caaagaagat gtgggcgagt
     7201 attttagatc tttgatttct ttaagtgagt taaaacaaga taagacaact atgctagcca
     7261 tacttaggcg tttggttgat ttaaaggaag aaaatttagt tcaagagtgg aaaaaaaaca
     7321 actttaagga agataagatt atagagttaa aacataagtt ctatgaagag gttagaaagt
     7381 tttatgaaaa agaacatcaa aatttaatta atgaaataaa agagaaaaaa cttttaaata
     7441 atttttatca gtccttaata caaggagtgc ataatatagg tttaattatg aatatttttg
     7501 aaatt
//
LOCUS       DAPIWV010000081         7409 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.082, whole genome shotgun sequence.
ACCESSION   DAPIWV010000081 DAPIWV010000000
VERSION     DAPIWV010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7409
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.082"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            111..1601
                     /locus_tag="RJ272_001297"
     CDS             111..1601
                     /locus_tag="RJ272_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7382364.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTLENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKAMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            1598..2986
                     /gene="ftsA"
                     /locus_tag="RJ272_001298"
     CDS             1598..2986
                     /gene="ftsA"
                     /locus_tag="RJ272_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDV7382365.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            3002..4114
                     /gene="ftsZ"
                     /locus_tag="RJ272_001299"
     CDS             3002..4114
                     /gene="ftsZ"
                     /locus_tag="RJ272_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDV7382366.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            4270..5082
                     /locus_tag="RJ272_001300"
     CDS             4270..5082
                     /locus_tag="RJ272_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HDV7382367.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDSSRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNAILFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            5111..5902
                     /gene="flgG"
                     /locus_tag="RJ272_001301"
     CDS             5111..5902
                     /gene="flgG"
                     /locus_tag="RJ272_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HDV7382368.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5968..7398)
                     /gene="glnA"
                     /locus_tag="RJ272_001302"
     CDS             complement(5968..7398)
                     /gene="glnA"
                     /locus_tag="RJ272_001302"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDV7382369.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2645 a         1012 c         1367 g         2385 t
ORIGIN      
        1 aaatcataaa atttaaagaa caaatatttt ttggtaaaaa ttttataatt aaactccact
       61 taaacacttc tacgatacaa tatctggttt aaatttaatc aaggaatgat atgcttactt
      121 ggatgcaaca tcacaaaaaa tatcttgttg ttactatatg ggttagtact atagcttttg
      181 ttggcgctgg ctttttaggt tggggtgctt atgattttaa tctcaataga agttcgagtg
      241 ttgcaactgt aggaaatgaa aagataggtt ttagcgaatt tgatactaga tatagacaaa
      301 ttttaagtta ttataatcaa attagcaatg gtgctttaac tctagaaaat gctgagcaac
      361 taggcattaa aaatatagct ttaagctctc ttgttgaaga taagcttttg ttaaattttg
      421 ccaaagattt gggtattggt gtaaacgaga atgaaatttt acaaaaactt gcaaatacta
      481 gagaatttca agatcctaca ggggatttta acaaaacaat ttattatgaa cttttaaatg
      541 ccaataattt agctccaaaa gattatgaaa cacaacttgc aaatgaagta attaccgata
      601 aacttaatca aatttttaat attcctagca aagatgagga attaaaaatg ttagcttcta
      661 gttatttcat gcaagatgct ttaagtattg caaaaattga ttatgacaaa aaaaatatta
      721 agattaacga agaggattta aaaaagcttt ggaatgaaca taaagaagat tataaaacta
      781 aaaaaatata tgaaatttca acttattttt tgccagttag caatgagaaa attgacgaca
      841 aagaattaga aaaattttat aatcaagatg aaaataaact aaaatataaa gattttgcag
      901 gtaaagtgat ggattttcag tctgctaaaa atgaagttgc taaagattac gccttaatgc
      961 aactaaagaa tgtggctaat gctaaatttt tagatttaaa aaatgggaaa gataattttc
     1021 aaaaagatca aaatattagt gaatctgatg tttattatcc aattgatctt ttgaataaag
     1081 ctaaaaatgg agatgtttta cggccagcac cttataataa cggatatatc atagttaaac
     1141 taaataaagt agatcctata agaaataaaa cttttgaaga agctagagaa gaagttttac
     1201 ctatgtattt aagcgaacaa gctagaaaaa atttagaaga aaaagctaaa aatagtttag
     1261 taaattttaa aggcgatgat ataggctttg taagtcgaga tagttctcgc gagagtgtaa
     1321 aggttagcga taaaatatta aacgattctg aatttgctta ttttttaatg aatgtattta
     1381 atactgatca aaatagttct tatgtggtca ttaatgacaa taaagcaata ttatataaaa
     1441 taaataaaca aaaattagat atgaactccg ataaatttga acaatacaaa gctatgcttg
     1501 aacaaaattt gcaaaattta aaagcaaatg agcttaagca agaacttgtt gatgaactta
     1561 aaaagatata tccgataaaa atttattata aagggaattg attttgaata tattaggaat
     1621 tgacttaggc tcaacccaga cttgtgccat tattgctcaa aaagatgaag atggattaaa
     1681 aattattggt ttttccaagt cgaaaaccaa cggggttaaa aaaggtgcca ttaccaatat
     1741 agagcttgct tctaaatcta ttgaagaggc tgttagaagt gctgagatga tgagcggagt
     1801 tcattatgat agggttgtgg tgtctatatc aggtgcttat actaaaagcg ttgatagcat
     1861 aggtgttgtt aatattccaa atcatgaaat aggcattaaa gaaattcatc gtgctgtaag
     1921 tacagctaag catactgcca atctaccaag tggttatgaa attatccatg ttttgcctta
     1981 taattttaag gttaatgatc ttgaacatgt tgatgatcct ttgggaatga gtggtaatcg
     2041 tttagaagtt tcaacccata tagtgatttc acaagaatct catattaaaa atcttaagaa
     2101 agcagttgaa ttagctgatt taagagtgga taatatagtt ctttcaggat atgcttcagc
     2161 tatagcttgt ttagatgata gcgaaaagga attaggtgct gttttgattg atatgggtgg
     2221 agcgatttgt gatatggttg ttcatactgg aaattcaatt agatataatg attgtttgca
     2281 aattggctcg attaatatca cccaagattt atcaatggca ttgcatacac ctttaaaaga
     2341 agcagaaaaa atcaagctta attatgcagc tctttcacaa cagcctaata cccttataca
     2401 aattccttca atgggtgatg aaagaaaagt taatgaagtt tctttggata ttatttcaaa
     2461 cgtaatttat gcaagagcgg aagaaacttt gatgattttg gcaaaaatct taagtgataa
     2521 tcgttatgcc aatgctatag gtggcggagt tgttttaaca ggtggaatga ctaagttagc
     2581 aggtattgat gagctagctc ctgcaacatt tgataatcgc tcagttagac tggctactgc
     2641 aagaaaagat ttgattactg gttttagtga aatttttaat gatcctgaaa atacttgtgc
     2701 tataggactt tgtttatatg gagcgggata ttttacgcct tatgaacttg attctaatga
     2761 aaaattaaga tataaagggg aaattgaaaa ttttaatcgt caaattaaac aagatattgt
     2821 tttgcaaaaa gatacagaaa gtgaaataaa atctgatttt tttgatgaaa atttgcaaga
     2881 aaatgataca attgcaatac aagaacaatt agattttaaa gagccaaaag aaaaaaaacc
     2941 tagtgttttt tcaaatatct ggcataaaat tatgaatcaa ttttaacaag gagaaatttt
     3001 tatgagtgaa tttttagtag aagaaatgca acataataaa ggtgcaaaaa ttaaggttat
     3061 aggctgcggt ggcggtggcg gtaatatgat taaccatatg gttaaaatgg gattaaatga
     3121 tcttgattta attgcagcga atactgatgc acaagctatt tcaatttcat tagcaaaaac
     3181 taaaattcaa cttggcgaga aaaaaactaa aggtttgggc gctggtatgc ttcctgaagt
     3241 aggtgcagaa agtgctagag aaagttttga agaaataaaa gcaagtctta gtcaaagtga
     3301 tattgtattt attgcttcag gttttggtgg aggtactgga acgggtgcca ctccagttat
     3361 tgcacaagca gctaaagaga ttggagcttt aactgtttct gttgtaacta tgccttttgc
     3421 attcgaagga aaacaaagaa aaaaacttgc tgaaagcggt ctccttgagc ttaaaaaaga
     3481 aagtgattct attcttgtaa ttcaaaatga aaaattattg agcattattg ataaaaaagc
     3541 aggcattaaa gatgctttta ggttggttga tgatatttta gctcgtgctg taaaaggtat
     3601 ggtgtctatc ttacttgata atggagatat taatgttgac tttgcggatg taagaaccat
     3661 catgagtcat cgcggactcg cgcttatggg tgttggtagt gctagcggtg aaaatgctat
     3721 agaagaggct ctttcaaacg ctatagaatc tcctttgctt gatggaatgg atattaaagg
     3781 tgccaaggga gttattttac attttaaaac aagttctaat tgctctttgt ttgaaatttc
     3841 ggcagcagca aatagtatac aagaaattgt tgatgaaaat gctaagatta tttttggttc
     3901 taccacagat gatagcatgg aagatagagt tgaagtaact attattgcga cagggtttga
     3961 agataaagat acagtagcta aaaaatctac cgaagaagct caagcttcta agaaaaatcc
     4021 ttatttaagt cttaaaaagg taagcggtgg ttacgatgaa gagataatgg cgcaaattga
     4081 aacaccaact ttcttgcgtc gtcaaatgga ttaaaattga tttttaaagc aagattgagt
     4141 caaatcttgc tttttatagt ttaaaattct ctcctaataa tctttcaaat atttattttt
     4201 ctttgttttt aaaagttgga acactctttg cttttatagt tataaaatct taaatttata
     4261 ggtgaaaata tgcaaaatgg atattatcaa gcaactggcg gaatggtaac tcagtttaat
     4321 aaacttgatg tgattactaa taatcttgcc aatatcaata caagtggata taaaagagat
     4381 gatgtggtta ttgcagattt taaaaggatt tttaaagaaa ctcaggatga gttgcctata
     4441 gaaaatcaca caagagattc atctcgtttt gtaaatacta caatagatgg catcccgcaa
     4501 gtttctcaag aatatacgga ttttagccta ggttctttaa aggccacaaa caatcctttg
     4561 gatttggcaa tgactagaga agatgctttt tatttggttc agaccaaaga tggagaagta
     4621 agattaacta aagatggaaa ttttcaactt gatgatgagg gttatttggt aaataagcaa
     4681 ggatacaagg tattaagtag tgattatttt aataatcctc agaatgctgg catacgcatt
     4741 cctaatggtg ctgttcaaat tagcgttgat aaaaacggaa gcattgaagt tgatggagct
     4801 caaaatgcaa tattatttgt agcacaagta gatgatataa gagctttgca aaaagatggg
     4861 gataatgtct ataaaataga tgatctaacc cgtattagag atttgaaaaa ctccaatgct
     4921 attcgccaag gtttttctca gggatcaaat gttaatccag ttactgaaat ggtaggactg
     4981 attgaagcaa acagaatggt agaaatgtat caaaaagtta tgacagctca tatggatgac
     5041 ttaaatcaag aagctatcaa taagcttgca gctgttaaat aatttaaaat aaaataaaaa
     5101 aggattcaag atgatgagat cacttcatac tgctgctaca ggaatggtag cgcagcaaac
     5161 acaaattgat gttacttcaa ataacatcgc caatgttaat acagcaggtt ttaagaaaag
     5221 tcgtgcagaa tttgctgatc ttatgtatca agttatgaag tatgcaggaa cttcaacttc
     5281 agctactact ctttctcctt cgggtataga agtgggtgtg ggtgttcgtc caacagcggt
     5341 aactaaagtt tttactgaag gaaatttaaa atcaacaagt actgatggtc ttgatatggc
     5401 tattgcaggt aatgggtttt ttcaaataca acttcctgat ggcactatag gatatactag
     5461 aaatgggcaa tttacaaaag ataatgaagg taatattgta aattcagatg gctatagact
     5521 tttacctgaa atgacaatac ctgaaggcgc aacagcaatt aatgttgcta cagatggaac
     5581 cgtttctgta atgctaccag gggagcaaca agaaactcaa attggccaag tggagctagt
     5641 tcagtttata aatccagcgg gtcttcattc tatgggtgat aatctttatc tcgaaacagg
     5701 agcaagtggt gcacctgttg cgggtatagc aggacaagat gggcttggaa caataagaca
     5761 tggatttata gaacttagta atgttcagct tgttgaagaa atgacagatc ttatcacagg
     5821 acaaagagct tatgaagcgg gttctaaggc cattacaaca agtgatgata tgctaggaat
     5881 tgtaaatcag cttaagcgat agttgatata aaataaataa tttttaattc ttttttgttt
     5941 aatggcgtgt taaacgccat taaattttta gcaagagtag caagttttaa attcataagc
     6001 agttggacga gcttctactg gccaaacttg tgtttcaaat tttaaatgct gatagtcatc
     6061 gataaaaata tcgctcatta caggttttaa ataagaatta tgtcggatta aagcttctaa
     6121 acttcctctt agagtatgtg gtaattgctc tatccctttt tcacgtattt catccaaagt
     6181 aagatcaaat aaattttcat ccataggacc cacaggaatg gttttatttt tgattccatc
     6241 aagacctgcc attaaaagac taacaaaagc taaataagga ttagcagtgc tatcagggaa
     6301 gcgaatttct atacgagctg aatttttgcc tatgccataa ggaacgcgac aacttgctga
     6361 tctgttttga caagaataag ttaaaataca aggagcttca aagccaggaa ctattctttt
     6421 gtaagagttg gaacttggat ttgtaaaagc tgcaacactt ctagcatttt ttaaaattcc
     6481 acctatataa tttatagcag tttgactaag tccactgtat ccatctttat cgtaaaataa
     6541 atttactcca tttttccata agctcatatg aacatgcata ccattgccat tatctccgta
     6601 taaaggtttt ggcataaaag tggcagtttt gccatttaaa tgagctacca tttttacaac
     6661 atatttataa atttgaacat tgtcagctgc ttctacaagc gtgccaaaat ttactcctat
     6721 ttcagcttgt ccttgtgcaa cttcatgatg atgaacaaaa gttttaagac ctactttttc
     6781 aagggtttga accatttcag aacgaatatc tactaaagaa tcaattggct gaactggaaa
     6841 atatccacct ttgtttcttg gcctgtgtcc agtattgtag ctatcggtaa attctctatc
     6901 atcattccac tctccttctt cggtatcaac ttcatactta gaacaatgag tagtatcaac
     6961 tatttttaca ctatcaaaaa caaagaattc attttctggt ccaaagtaag cagtatcagc
     7021 tatgccacta tttttaaggt gttccattgc tttttttgct atgcttcttg gacatttttc
     7081 atacatttgt cctttgtaaa tatcatacac atcacaaaat actatgatag taggatcagc
     7141 cgtaaaagga tctaaaaaag cactttgagc atcaggtttt aaaatcatat ctgatttttc
     7201 tataggttgc catccatgaa ttgagcttcc atcaaatgga atgccagttt gaaatgtttc
     7261 ttcattgatt gcatgaagat tataggtaat atgatgccaa gttcctatca tatctgtaaa
     7321 acgaaaatca acaaaaagca cttcattttg tttgcaaaat ttgaaaaaat catctatatt
     7381 attaacaaat tttcccatat ttttactcc
//
LOCUS       DAPIWV010000082         7361 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.083, whole genome shotgun sequence.
ACCESSION   DAPIWV010000082 DAPIWV010000000
VERSION     DAPIWV010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7361
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.083"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(32..663)
                     /locus_tag="RJ272_001303"
                     /pseudo
     CDS             complement(32..663)
                     /locus_tag="RJ272_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655617.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
     gene            complement(691..1164)
                     /gene="pseH"
                     /locus_tag="RJ272_001304"
     CDS             complement(691..1164)
                     /gene="pseH"
                     /locus_tag="RJ272_001304"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HDV7382370.1"
                     /translation="MIGLKDFTHLNGNEILLIWQWRNDEKISQFMKTKYIDFQEHLNF
                     ITSLKKDQSKKYFLVFKDDGAIGVIDFINIMQDSCEFGLYAKPDLKGIGQILIQEIKK
                     YAFENLKIKELKACVFKQNKKALDLYLKNGFYIKNEDKNMFYVEFMGGGYSQIST"
     gene            complement(1161..1982)
                     /gene="pseG"
                     /locus_tag="RJ272_001305"
     CDS             complement(1161..1982)
                     /gene="pseG"
                     /locus_tag="RJ272_001305"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HDV7382371.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIRDEFYKESKIEREKIWDY
                     FICIGGTDIKNLSMQIASDLPKNKKIAIATSSSNKNLKKLEKFIQNHENVKLFIDEEI
                     SKLMNESTKLIISASSLVNEALLLKANFKAVCVAKNQEKLANWLVQKGYEVEYRL"
     gene            complement(1966..2664)
                     /gene="pseF"
                     /locus_tag="RJ272_001306"
     CDS             complement(1966..2664)
                     /gene="pseF"
                     /locus_tag="RJ272_001306"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HDV7382372.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EIVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKNILKQAYEKFIQNESKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            2756..3967
                     /locus_tag="RJ272_001307"
     CDS             2756..3967
                     /locus_tag="RJ272_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7382373.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     INDILKNINLGHLSVNKDNFEQIIPLIEQKVNEMKQAGLVDENQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINVLKDLVKKFPNFKNLPKIYGGGSYGGYLSLLIAKIAPWHVDGVI
                     DNSGVCLPFLAHILGRDMNQGEFVFEGDNNRIYCFVQKYWTRNINSSYYFGDENYLIR
                     AVLNSNHLKIQASMNNNTIFISYHSMQDMGAPVQNKIELYKCYQELGYDATLYLVKDE
                     NDIDGRFIKSLEHGLRMTDKALFRKELPLMLEKLQGRKFDMSKNSITYPCKDKQFIFK
                     DKDDKFELEIV"
     gene            complement(4280..5299)
                     /locus_tag="RJ272_001308"
     CDS             complement(4280..5299)
                     /locus_tag="RJ272_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HDV7382374.1"
                     /translation="MNLKLNSHNIKAISIVLPKNPHTLEKELQECNLNQKKYELLKQN
                     TGINHHFISPNNIYASDLASKALEKLFRENLLLKDELDVLLVYSFSPDFLAPALSSLI
                     HKNLGLSEKTLCFDNIAFCPGFLQGLMQAFSLLDNENIKKIAFICVSVKSKKIPKKDK
                     ITYLSNSDSASVILLEKSNTKEKAFFSQKIFSKLATEETFPLKCFKEANDFIDMDKNL
                     TFSHLNENFPRFFDDFFDNFKLDKSKIGEFFFGSANNFIKTKLLELLNFKEIKNDETL
                     KNYGDVTINKLAFDLANYEWRKGGGIKQVFMASFGTGITFNAMSLKIDFSKIKNFIEI
                     IDFNT"
     gene            5400..6470
                     /locus_tag="RJ272_001309"
                     /pseudo
     CDS             5400..6470
                     /locus_tag="RJ272_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            complement(6467..6694)
                     /locus_tag="RJ272_001310"
     CDS             complement(6467..6694)
                     /locus_tag="RJ272_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7382375.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLELAMKD"
     gene            complement(6696..>7361)
                     /locus_tag="RJ272_001311"
     CDS             complement(6696..>7361)
                     /locus_tag="RJ272_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl transferase"
                     /protein_id="HDV7382376.1"
                     /translation="QKIANDFFRQEVNFVKNIENLDDFFKNLKNCLIISANNFYIFKK
                     ECIQKNTIINYHNALLPFHRGCNAHIWSIWENDKKTGITWHMVKESIDTGDILVQKEI
                     KLDNNCTALSLLNAQHKLALTLFREALEILKNKAFKMQISGGGYHKKLSLPNNGYLDL
                     TWNKEKISRFLRAMDCGALSGVPKARLEILGEEREILFYEINELDLILNLSDNVILKI
                     TKE"
BASE COUNT         2517 a         1001 c         1101 g         2742 t
ORIGIN      
        1 tttaaaaata aaatactaat tatttagacc tttatctatc tatggaatct ggataaattt
       61 tgagtataaa ttttttacca tctttgtaaa aaaatgctgg aaaatcttca ttgctagcta
      121 tgcgtaagag attaaattgt tcatttaaac ttttatttat atcaagctcg ctatcttttg
      181 gacttctttt aggataaaaa ctttctttgc ccacttgttt tttgcttgta tatcgggata
      241 aagttctaaa aattctaaac acatatctag agtaaaccga gcttgtttct ctcttagctc
      301 ttcatataat tctaagccat ttaatttaag gtttttttgt aaataaatat cgccattatc
      361 ggctttatcg tctgcttcaa aaagcgaaaa ggcgatttca tttttgcctt ctatgacttg
      421 atgaaaaagt ggagcccagc cttttccttg gggtaaattt gaagcatgga tgacgatatt
      481 gtgtttgttg tgttttagaa aatttttatc tatgatttta tgataagaaa gtataaatac
      541 tatatcaaaa ttaaaaatct ctgtatgatt gtaaaaaagc ttggaatttt tgatttgctg
      601 gttaagttct ttagcataag ggataaacca ttgattaggc gaggtaagta tggctatttt
      661 catactgcta gcctttttat aataagaagt ttaggttgaa atttgactat accccccccc
      721 cataaattct acataaaaca tattcttatc ctcattttta atataaaaac cattttttaa
      781 atataaatct aaagcctttt tattttgctt aaaaacgcaa gcttttaatt cttttatttt
      841 taaattttca aaggcgtatt ttttgatttc ctgtattaaa atttgcccta tgccttttaa
      901 atcaggcttt gcataaagtc caaattcgca agaatcttgc attatattga taaaatcaat
      961 cacgccaata gccccatcat ctttaaaaac caaaaaatat tttttacttt gatctttttt
     1021 caagctagta atgaaattta aatgctcttg aaaatcgata tattttgtct tcataaactg
     1081 gcttattttt tcatcattgc gccattgcca tataagcaaa atttcgtttc catttaaatg
     1141 agtgaaatct tttaagccta tcaaagtcta tactccactt catagccttt ttgaactagc
     1201 caattggcta gtttttcttg atttttagcg acacaaacgg ctttaaaatt agcctttaaa
     1261 agcaaagctt cattgactaa agaactagca ctgatgataa gctttgtgct ttcattcatt
     1321 aattttgaaa tttcttcatc gataaagagc tttacatttt catgattttg gatgaatttt
     1381 tcaagttttt tgagattttt attggatgag cttgtagcga ttgcaatttt tttattttta
     1441 ggcaaatcag aggcaatttg catggaaaga tttttgatat ctgtgccacc tatgcaaatg
     1501 aaataatccc aaattttctc tctttctatc ttgctttctt tataaaattc atctctaatt
     1561 aaagcataag aaaacccaca tcttacttcg catttaaaag gcactaaacc ttcataatca
     1621 cttgcttttg cataggcatt gacattgagt aaaatatcac aatgatgagg ctttatttca
     1681 tcatcaaagc ttagaatttt cacccctgtt tcaagcttga tcagtttttc atcatctacg
     1741 ctgatgccat agtgatcaat gataagaagt tcaaattttt cttctttgat gagattgata
     1801 agttcgtaaa tgctttcact atcaagctca taaacaggat aaggaatttc atcgatcaaa
     1861 gagccttcta aaggcaaaca agcaaaactt acatcgctat attgtttagc taagactaga
     1921 tcacgtttaa tgtgtccaaa gcctatttga ctggagctat cgcttctaaa aagcactttc
     1981 atgatttacc ttataaagta tttttgcaaa ttctaaatct tgtatggtat ctatatcgca
     2041 aactaaattt cttggcaata caaatacact agaatgaggt ttaaatataa aatcttcttc
     2101 aagccaagct ttacttgtgc caaaataaaa agctcctgca tcgtgataag cttttgttaa
     2161 gtcttgtgaa cgacttttat aatgtttttc atcaaacata taaacttgat tattctcatt
     2221 tagataaaaa gccctttgta taggatactc aaactcagtg gcggcaaata aaaacttgct
     2281 ttcattttgt ataaattttt cataagcttg ttttaaaatg tttttattta aaagcggagc
     2341 agtagcataa agacaacaga catgatcata aatttgattt tggctttgta aaatttctat
     2401 ggcattttgc actgcagcag tgcttgaagc ataatcatcg cttaaatttt tatcacgcac
     2461 aaatggagct tttgcaccgt attttaaggc tacttctatg atttcttcat cgtcgcttga
     2521 aagtactatt tcatcaaaaa tacctgaatt taaagcattt tctatgctat aagcgattaa
     2581 aggtttacct agaaaatcaa tgatattttt tctaggaatt ctttttgatc caccacgagc
     2641 agggattatg caaagatttt tcatagttaa gccttgtttt ttgtgtttta ttttactaaa
     2701 atttaagtat aattgtcttt aaaatacaat aaaataatgc aaatggggtg gaataatgct
     2761 cataaatcaa acctttgaaa ttgattcttg tgatgatgta gaattaaata taaaaagaac
     2821 tagcaaactt gaataccgca ttagctatga tgatgaaaaa gatatcaaag ccatagtttt
     2881 tatagtgggt ggttttggag ctaatgcaaa tatttctttt ttagattttg atagggaata
     2941 tattgctaaa aattttgatg ttgtagtggt acatgttttt tatcattgtt tttgtgcaag
     3001 acaaagtatt gatcaaaagt ataatccaaa gcttattccc aatcaagatg atttagagcg
     3061 tatcaatgat attttaaaaa atattaattt aggacattta tcggttaata aagataattt
     3121 tgaacaaatt attcctctta tagagcaaaa agttaatgaa atgaaacaag caggtttggt
     3181 tgatgaaaat caaaaaatag aactttcttg tgattttatc ccacctaatg gagattatca
     3241 aaactatggc attatggcag ctattgatca tatcaatgtt ttaaaagatc ttgtaaaaaa
     3301 atttccaaat tttaaaaacc ttccaaagat ttatggggga ggatcttatg gaggatattt
     3361 atctttactg atagccaaga tagctccttg gcatgtagat ggtgtgattg ataattcggg
     3421 agtttgcttg ccatttttag cacatatttt gggaagagat atgaatcaag gagaatttgt
     3481 ttttgaagga gataataata gaatttattg ttttgtgcaa aaatattgga ctagaaatat
     3541 aaattcttct tattattttg gtgatgaaaa ttatttaatt agagctgttt taaactcaaa
     3601 tcatctcaaa attcaagcaa gtatgaacaa taatactatc tttataagct atcacagcat
     3661 gcaagatatg ggcgctccag tgcaaaataa aatagaactt tataagtgtt atcaggaatt
     3721 aggatatgat gcgactttgt atttggtaaa agatgaaaat gatatagatg gtagatttat
     3781 aaaaagtcta gagcacggtc ttagaatgac tgataaagct ttatttagaa aagaacttcc
     3841 tttgatgctt gaaaaactac aaggaagaaa atttgatatg agtaaaaatt ctatcactta
     3901 tccttgcaaa gacaagcaat ttatttttaa agataaagat gataaatttg agcttgaaat
     3961 tgtttaagat tatcgttagt aaagttaaga aaggattgct agggaggggc tttgtagatg
     4021 gatatttcct tgcctaatat aaaaattaaa tttatgattt ttttaaaaaa agtgaaatat
     4081 ttttgtataa tgatttgttt aagtggttaa tttctcttgg tgaaaaaggt gctaccaata
     4141 atagaaaaag actttaaaat aattttctgt tgaagatggc aaatgagttg cttgagttga
     4201 taaataactc taatttttcc accgcattgt tttagcctat gcttaaataa aatctacgct
     4261 tgaaacatag tatatttttt caagtattaa aatcaataat ttcgataaag tttttaattt
     4321 tgctaaaatc aattttcaaa ctcatggcat taaaggtaat tcctgtgcca aaactagcca
     4381 taaaaacttg ttttatgccc ccccccttcc tccattcata gtttgccaaa tcaaaggcta
     4441 atttatttat cgtaacatcg ccataatttt ttaaagtttc atcattttta atttctttga
     4501 aatttaagag ttctaataat ttagttttta taaaattatt tgcacttcca aagaaaaatt
     4561 cgcctatttt gcttttatca agtttaaaat tatcaaaaaa atcatcaaaa aatcgaggaa
     4621 aattttcatt taagtgagaa aatgtgagat ttttgtccat atcgataaaa tcatttgctt
     4681 ctttaaagca ttttagagga aaagtttctt ctgtggctaa tttggaaaag attttttgcg
     4741 agaaaaaagc tttttctttt gtattagatt tttcaagcaa aataacacta gcactgtcgc
     4801 tattactaag gtaggtgatt ttatcttttt tgggtatttt tttacttttt acacttacgc
     4861 aaatgaaagc tatttttttg atattttcat tatctagtaa agaaaaagct tgcattaggc
     4921 cttgtaaaaa tcctgggcaa aaagcaatat tatcaaaaca cagagttttt tcacttaaac
     4981 caagattttt atggattaaa cttgaaagtg caggggctag aaaatctggt gaaaaactat
     5041 aaactaaaag tacatcaagc tcatctttta aaagcaaatt ttctctaaaa agcttttcta
     5101 gtgctttgct tgctaaatca cttgcataga tattattagg gcttatgaaa tgatgattta
     5161 taccggtatt ttgctttaaa agttcgtatt ttttctggtt taaattgcat tcttgtaatt
     5221 ctttttctaa ggtatgtgga tttttgggta aaactatact aatagcctta atattgtgtg
     5281 agtttaattt taaattcatt tttacttctt tctagtattt aatagataaa ttgtaactta
     5341 tgaatgctta aaatttaagc acaaacggag tataattttt tgtaaagaaa ggatataaaa
     5401 tgacagcata tttacatata ggaactacta atacaggaaa tcaagaaaaa caaggcttct
     5461 tgatgcaaaa cgaagaaagg cttttaaaaa aaaggctata tttatccaaa aagccttaga
     5521 gtggcaaata ggcattgggc tttggtagat atggttttag aactagttca aaaagaagat
     5581 attttgcaaa aagagagtat tttaagtcat atcacaaatg aaagacttct tagagctata
     5641 gaaaatttta aaagcgaaag tgctttacat aaagataaaa atttattttt tcagctgagg
     5701 gtatagtttg ggatttttct accaaaaaac atgtagaaat tttagaaaag attatgagag
     5761 agttaggttt tactcaaatt tatattattg tgtattttag agatactttg ggttatttaa
     5821 actcacattg ttctcaagat cataaaaaca atatggggta ttattctgct gattttgctc
     5881 cgcaagatca tcctagaaaa tatatttttg actatgaatg gatttgcaaa actcatgctg
     5941 aggtatttgg agaagaaaat ttgatagtaa gacttctaag ggaggattat gtaggaggga
     6001 ctttacttaa ggattttgtt tatcatttag gacttgaatg ggatgagagt tttgttttaa
     6061 aacaaaccaa aaatgaaagt tttaatcttt taggaatgga gcttatgtca agattaaatc
     6121 aaaaagattt aaagcaggat aatcttaatt ctttgctttt tatggcaaga agaaaatttg
     6181 aaggcagcaa agaaaaaaga ttaaaatttg cagtgcaaaa agatattgct aaagcttatg
     6241 tggattattt tgcttcttca cttgaatggg taaaaaacaa atatttcccg cataaaaatt
     6301 ctctttttac tcctgtgaat tgggaagaat atgaacaaaa ttatacttta acccatatgc
     6361 taagtaaaga ttgggatgat gtggcggatt ttatagcaca aattattgtt tctaaaaatg
     6421 aaatcatcag ttctttaaaa gaacagcttg aacttgcaag gaaagattag tctttcattg
     6481 caagttcaag catttttttg atattttcaa agctttcaaa attttcaggt gtgataaatt
     6541 ctgcttttaa gggtttttta taaaattttt ctatttcggc aaccaaagcc atgatatcga
     6601 tactatcgat aaaatcttca cttactagat tttccatact ctcattgata tctgttcttt
     6661 ctatattgat aaaaaattgt ttgatttctt gcattttatt cctttgtgat ttttaaaatg
     6721 acattatcgc ttaaatttaa aattaaatca agctcattga tttcataaaa taaaatttct
     6781 ctttcttcac ctaatatttc taatctagct ttaggaactc cgcttaaggc accgcagtcc
     6841 atagctctta aaaagcgaga aattttttct ttattccaag taagatctaa ataaccatta
     6901 tttggtaaag ataatttttt gtgatacccc ccccctgaaa tttgcatttt aaaagcttta
     6961 ttttttaaaa tttctaaagc ttctctaaat aaagttagag caagtttgtg ttgagcgttt
     7021 aaaagactta aagcagtaca attattatca agttttattt ctttttgaac taaaatatca
     7081 cctgtatcta tactttcttt aaccatatgc caagtaatac ctgttttttt atcgttttcc
     7141 catatactcc aaatatgtgc attacatcct ctgtgaaaag gtaataatgc gttgtggtaa
     7201 ttaataatag tatttttttg aatacattct tttttgaaaa tataaaaatt attagcacta
     7261 ataataaggc aatttttaag atttttaaag aaatcatcta aattttctat attttttaca
     7321 aaatttactt cttgtctgaa aaaatcatta gctatttttt g
//
LOCUS       DAPIWV010000083         7310 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.084, whole genome shotgun sequence.
ACCESSION   DAPIWV010000083 DAPIWV010000000
VERSION     DAPIWV010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7310
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.084"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(552..1325)
                     /locus_tag="RJ272_001312"
     CDS             complement(552..1325)
                     /locus_tag="RJ272_001312"
                     /inference="COORDINATES: protein motif:HMM:NF012993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HDV7382377.1"
                     /translation="MKIALAQIKTSPKWQENLEKILKLLNETKKQEAHLVVFPETCMA
                     FVPSDGSVNFQDIAQDIQDEFVQTILKESEKLKLAVVFGFFEKGAIKVKNCVLFVNSG
                     KILHKYHKTHLYNAFSYNESKDIEEGQNPIKAFYTPWGKMGMMVCYELRFPEIARSLA
                     LQGAKLILVPTAWVDGKLKKEHFSLLSRARALENTVFLCACSQTKNIYTGESALISPL
                     GIELIKMGEEEALAFVQIDLEEIAQLRKTLPCLEQRRKV"
     gene            complement(1332..2179)
                     /locus_tag="RJ272_001313"
                     /pseudo
     CDS             complement(1332..2179)
                     /locus_tag="RJ272_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009649884.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
     gene            complement(2252..2833)
                     /locus_tag="RJ272_001314"
     CDS             complement(2252..2833)
                     /locus_tag="RJ272_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7382378.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIFA"
     gene            2932..3273
                     /locus_tag="RJ272_001315"
     CDS             2932..3273
                     /locus_tag="RJ272_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7382379.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMCD
                     WEEENKKLQGK"
     gene            3274..3825
                     /locus_tag="RJ272_001316"
     CDS             3274..3825
                     /locus_tag="RJ272_001316"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382380.1"
                     /translation="MIKTIKILAFLAIFAFALSIALCFYLFFDYFIEERNIIILTLIF
                     ISMICGILLYFLNIILLSFKLKSISFALIFLGFLFCVLASFGFYQCYIEYNNFLFSQT
                     KGKLAFYFCAFFTTLAFILGYFHFKTMAKISSWNEFLFVYKFFMVALIVSYFNAFFGF
                     FMLGASAILLFISWYNFKTLKES"
     gene            complement(3828..4904)
                     /locus_tag="RJ272_001317"
     CDS             complement(3828..4904)
                     /locus_tag="RJ272_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDV7382381.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYDPSAYMDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITSKD
                     IDKAYENLTSGKAKFRYVIDMRDE"
     gene            5035..>7310
                     /locus_tag="RJ272_001318"
     CDS             5035..>7310
                     /locus_tag="RJ272_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDV7382382.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYNIRNHSGKYIDKFPSPKELFDRIYGNVKEWQYKLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCANQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKE
                     HIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDEGLKPLIELSSLG
                     SVRELADEFGGLEILKQS"
BASE COUNT         2537 a         1113 c         1164 g         2496 t
ORIGIN      
        1 aagtagaggt attgcaataa aaattataat gcttcctaac atagcattaa ggaatttgta
       61 aaatagaaat attaataaaa tattggctaa ggctattgga gttaagaaat aaaaacctat
      121 tgttttaaat ttagcatggg tattttttaa aaaatgatta aaaaatatta aaggagtgag
      181 atacaaaata agaaaaaatg aaacaaatat aaatccaatc catgctattg aaaaaatatt
      241 agaaaaaatc aaatccttgt tgaaatcagg aataaaatgg gcattgaaaa tataatactc
      301 agttaaaatc caagctccca aagcaaaact tacaaaaata atactagtgc ttatcacccc
      361 taaatatttt tttaaaaagt ccattatcaa aaaaaattgt tgcttaaggt tttttaattc
      421 attgatgttt tcttgattca taatctgcct tataaaaaaa tgattttaca caaaaatact
      481 ttttcaatcc tttaaaaaat gctttaatat taaaaatttt aaaagatttt caaggctaaa
      541 aagccttgag tttatacttt gcgtctttgc tctaagcaag gcaaagtttt tcttagttga
      601 gcgatttctt ctaaatcaat ttgaacaaag gctagagctt cttcttcacc cattttgata
      661 agttctatgc ccaaaggact tatgagtgct gattctcctg tgtagatatt ttttgtttga
      721 gaacaagcgc ataagaatac agtattttcc aaagctctag cgcgagaaag taaagaaaaa
      781 tgctcttttt taagctttcc atctacccaa gctgtaggca ctaagatgag ttttgcacct
      841 tgtaaggcta agcttctagc gatttctgga aaacgtagct cataacaaac catcatgccc
      901 attttacccc aaggcgtata aaaagctttg atgggatttt gtccttcttc tatatccttg
      961 ctttcattat aagaaaaggc attgtaaaga tgggttttat gatatttgtg aagaattttt
     1021 cctgaattga caaaaagcac acaattttta accttgattg cgcctttttc aaaaaaacca
     1081 aaaaccacag caagttttaa tttttcactc tcttttagta tggtttgaac gaattcatct
     1141 tgtatatctt gagctatatc ttgaaaattc acactcccat cacttggcac aaaggccatg
     1201 caagtttctg gaaaaactac caaatgagcc tcttgttttt tggtctcatt taaaagtttt
     1261 aaaatttttt ctaaattttc ttgccattta gggcttgttt taatttgtgc tagtgcgatt
     1321 ttcatcatat cttaatattt gtttaatctt gataaaaagc ttactctttc agtatcatga
     1381 tggtttgaaa tttgatacgc atttgaagct aaagaagcga ttttttcttt atcttgcgtg
     1441 tctaagctaa aatcaaaaac attaaaattt tgtttcattc tgtctttact tagagttttt
     1501 ggtatcacgg cgatttctct ttctatgagc catctaagaa cgacttgagc tacgcttttt
     1561 ccatgctttg caccaatttg ctgcaaagtg atattattaa aaagattatt atgcccttca
     1621 gcaaaagaag cccaaacttg catgataata cctagcttat tcatagtatt ttgagccgag
     1681 ttttgttgat aaaaagggtg gcattctact tgatttaaca tgggtttgat ttcattgtgt
     1741 aagcaaaaat caacaagacg atcagggtaa aaattgctca cacctatggc tttactaagt
     1801 ccttctttat aaatttcact catcacacgc catgctccat aagtatcatt aaaaggttgg
     1861 tgtatgagat aaagatcaat ataatcaagc cctaattttt taaggctttc ttcaaaggcc
     1921 ttttttgcta gcttttcgtt tgttttatcc acccaaagtt tagtggtgat aaaaagttct
     1981 tcgcgtttta tcccgcttgc tttgattgca gatcctacgg cctcttcatt attataaatt
     2041 gaagctgtgt cgataagacg atatccaacg cttaaagcat cttctacgca agcttggggg
     2101 tttttttagg atcgatttga aatactccat aacctaaaat aggcatttta ttaccatttg
     2161 ctaaagttaa atattgcata ttatctcctt taatcataat tgtttatatt atactatgca
     2221 aggctaataa attttaaaaa gttattattt ctcaagcaaa aatttttttc aagtgtagtt
     2281 catactcgtt tagatatttt tccacttgag gattttttac cacatcatta cacataaaag
     2341 ttggtaaagc tttcatacct ataaattcat gagccttatg caaatgccaa tacaccatat
     2401 ctacaccctt tccttcaaaa aattcatttt tatcattaaa ggcttcaaga ggtgcattcc
     2461 aagtgagaga aaacatgtat tttttaccat gatctaaacc accttttccg tagtttttac
     2521 taggattttc atgagttctt ccatcatttt taaaaagcac tccagcaccc aaaccaaaca
     2581 cttcatcgat atatttttta actatccaag gctcgcccat ccaccaagct ggcatttgat
     2641 agatcacagc atcagctttt ataaattttt gtatctcttc tttaggatca tatccttgat
     2701 ctatgtgagt ttgatctact tcgtatccta atgtttttaa aatttctaaa gcatgattat
     2761 gcaatgtcaa attaagttgt ccttttgaat ttccaaattc tttagcgcca ttaagtaaga
     2821 gtatattttt catttttatc cttttttaaa tttatgatac aattataact tagcataata
     2881 tcattttcaa tacagaaaat aaagtaatat actatactaa aggaatgtta aatgactaaa
     2941 gagaattctc cgtgcaattt cgaagaatgt ggatttaact atactctagc attaattaat
     3001 ggaaaatata aaatgagtat tttatactgc ttatttcgct atgaaatcgt acgttataat
     3061 gaactcaaac gctttttaag ctccatatct tttaaaactt taaccaatac cttaagagag
     3121 ctagaaaacg atggtttgat tatcagaaaa gaatacgctc aaattccacc caaggtagaa
     3181 tatagcttat ccaaacgtgg acaaagttta attcctatct tacaagcaat gtgcgattgg
     3241 gaagaagaaa ataaaaaatt acaaggaaaa taaatgataa aaactataaa aattttagca
     3301 tttttagcca tttttgcatt tgctttaagt attgctttat gcttttattt attttttgat
     3361 tattttatag aagaaagaaa tattattatt ttgacattga tttttataag tatgatttgt
     3421 ggaattttac tctatttttt aaatattatt ttgctttctt tcaagcttaa aagcataagc
     3481 tttgctttaa tttttttagg atttttattt tgtgttttag caagttttgg tttttatcaa
     3541 tgttatatag aatataataa ttttttattt tcacaaacaa aaggaaaatt agcattttat
     3601 ttttgtgcat tttttaccac tcttgctttt attttaggct attttcattt taaaacaatg
     3661 gctaaaatta gttcttggaa cgagttttta tttgtatata aattttttat ggtggctttg
     3721 attgtaagtt attttaacgc cttttttggc ttttttatgt tgggcgctag tgcgattttg
     3781 cttttcattt cttggtataa tttcaagact cttaaagagt cttgaattta ctcatctctc
     3841 atatcaatga catagcgaaa tttagccttt cctgaggtta gattttcata agctttgtcg
     3901 atatcttttg aagtgatgag ttcagtttct ggataaattt catgttttaa agaaaaatca
     3961 agcatttctt gagtttctgc gatcccgccg attagcgaac catagacttt tttacccgct
     4021 ttatgtacaa aggttatcac gctgatactt ggagcaactt cgtgaggtgg caaacccact
     4081 atcgccattt caccgccaaa tttaagcaaa tccatataag cactaggatc ataaggagtt
     4141 gggatggtag agatgataag atcaaagcgt tcttttacag catttttatc tgtgcttgta
     4201 taaaaagaac tcacgcccat agccaaagca tcggcttttt tgttttcatt tctagcaaaa
     4261 acgctaacct ttgcacccat tttaacagca tatttaaccg ccatcatacc aagtccgcca
     4321 aatcccgcta ctgctacgct tgagccttct ttgatatttg aaaatttaag cggagaataa
     4381 gtggtaattc ctgcacaaag caaaggcgcg actttttcca tcggtgcatc ttttggcaca
     4441 caaacggcaa atttttcact tacaactatg ttgtttgagt agcccccata agtgttttca
     4501 ttgccatgaa atacatcaca actattgtaa gtaaagatgg ttttgccatt ttcgcaaaac
     4561 tgctcttgtg agcgtttgca agcatcgcac tcaccgcatg aatttaccat acaaccaacc
     4621 cctgcgtaat ctcctacttt aaatttactc acatttttac ccacagcgat aacttctcct
     4681 gctatctcat gcccaggcac gcaaggataa gtagcttctc cccactcgct tcttgcggtg
     4741 tgaatatcgc tatgacaaat gcctgcatat aggattttaa tcaaaatatc attatcgcca
     4801 atagcatggc ggctaaattc aaagggtgta aatttcgcat ccttgctaag cattgcatag
     4861 cctttacttg cgatgcgatt gttttctaaa attttgtatt gcatttttgc tccttttttg
     4921 atttttttat aattataaaa cattagagta gctataagtc aagagtgaaa ataatttttt
     4981 aaaaattagt ataaatgcta taattataaa atttaatttc actttggggt aaaaatgcaa
     5041 aatttgtatt cagaagatga tactagagta aaatttatag atgcaaagct ttatgatagt
     5101 tcttggaatg aagaaaatat aaaaagaaat tattatttta cagatggtag aaagctttta
     5161 ggtggtaaaa gagcacaaag aaaatttgca gattatttgc ttagatatga aggaaacaac
     5221 cttgctataa tagaagctaa aaaatttagt aaagatcctt tagatggttt atctcaaggc
     5281 atagaatatg caaaaatttt aaatgtgcct tttgtatata gtagcaatgg agaaaaaatt
     5341 tatgaataca atataagaaa tcatagtggt aaatatatag ataaattccc aagtcctaaa
     5401 gagctttttg ataggattta tggcaatgtc aaagaatggc aatacaagct tttaacccaa
     5461 aatgttatgt atataccgca aaaagaatta agatattatc aaaaaatagc aatagataaa
     5521 gtcatagaag ccattataaa taacaaaaat agaattttac tcactcttgc tacaggcaca
     5581 ggaaaaacaa ccatagcttt taatttgtgc tatcgtttgt tagaggcaag atggaataaa
     5641 gaaaacaaag atcaaaagcc taaaatacta tttttatgtg atagagtgag cttaagagat
     5701 caagccttag gagaatttaa tcctatagaa agtgattgta aggcaattag tgctgaagaa
     5761 ataaagaaaa atgatggaaa aatcataaca aatgcaaata ttttctttgg aatttatcaa
     5821 agcttagccg caaattcaaa agaacaagaa aacacccaag aagaacaaga gagcaaattt
     5881 tatcttcaat acccaaaaga tttttttgat cttatcatca tagatgagtg ccacagaggt
     5941 ggagcaaacg aagaaggaag ctggagagct gtacttgagt atttttctta tgcgactcag
     6001 cttggtttaa ccgctactcc aaaaaaagaa gaaaatatag acacttatga gtattttggt
     6061 gagagtgttt atgattatag tcttaaaagt ggtattgaag atggattttt aaccccttat
     6121 aaagtcaaac tcataaaaac aactttgagt gatggttata cctataatcc tgatgatttg
     6181 atacaaggtg agcttgaaaa aggcttttat aaacaaagtg aatttgaaag aaatatcttt
     6241 ttaccaaact ataatgactt tatcgctaag aaaattttag agcttataaa tcctatggat
     6301 aaaaccataa ttttttgtgc aaatcaagct catgcaaatg aagtaaaaag ggctatagat
     6361 aaatataaaa gcgttaaaag agatgattat tgtgtaagag ttacgagtga tgaaggtaaa
     6421 atagggcttg attatctaaa attgtttcaa gataatgaca aaagctatcc tgtcatactt
     6481 actagctcta aaatgcttac aactggagtt gatgcaaaaa atgtgcgaaa tatagtattg
     6541 ctagcaaata taggttctat ggtggaattt aagcaaatca tcgggcgtgg cactagggtt
     6601 tatgaaggca aagacttttt taccatactt gattttgtcg gtgctactaa gcttttttat
     6661 gatccaaaat gggatggtga aaaaatagaa gaattaaaag agcaagatga aaaagaaaaa
     6721 atcactaaag agcatataaa acaaacaaaa gaagaaagca aagaaaaaaa gagcgtaacc
     6781 atacacttaa aaggcacaaa acttaaggtt ttagatatca caactactta tgtaggagca
     6841 caaggtaagc cacttagcac taaggagttt ttggaatttt tgataggaaa gcttggtgag
     6901 tattatgatg atgaagcaaa attgcgtgaa atttggagtg atcaaaaaaa tagagaaaga
     6961 tttttaaaag cccttgcaaa tgatggagta gatgaagatg ctttaaaaga tctaagagaa
     7021 atttttcaaa aagattgtga tatatacgat gttttagcgc atttaagctt taatgccgag
     7081 ataaaaacaa ggcaagagcg tgttttacaa gtagaaaatg gtgagttttt aaaacgcttt
     7141 caaaaagaaa aggctataaa atttatagaa tttttactaa atagatatca agaatacggc
     7201 ataaaagatt ttgatgaggg tttaaaacca cttatagaac ttagttcttt aggtagtgtt
     7261 agagaattgg ccgatgaatt tggtggctta gaaattctaa aacaaagctt
//
LOCUS       DAPIWV010000084         7278 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.085, whole genome shotgun sequence.
ACCESSION   DAPIWV010000084 DAPIWV010000000
VERSION     DAPIWV010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7278
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.085"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..2606
                     /locus_tag="RJ272_001319"
     CDS             <1..2606
                     /locus_tag="RJ272_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7382383.1"
                     /translation="FKRDYKTLSVEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEI
                     ECYFDNYDFKILEKSKKVEKYTFYKKGQIYLKNTSNSRKASASFYTPQSIANFLIQSA
                     LKDKLNNENILKFKILDNACGSGHFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENI
                     LNYIKDFVQDYEVDESDILKRLLLKRIIYGVDLNPFSIELTKLSLWIDSFIFTTPLSF
                     IEHHIKCGNALINSNLSDFKDLIKQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEE
                     QIKQSKQIYQNEITPKLNKLNLYLNYINTLHFVNKEELQILKALSQDDIQNLSQNEQA
                     KAIISKYQKEFNFFNYELEFPEITENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSD
                     YRSLIASKKKEIQDNLLAKDYIKQNYEKQKAYINDLNEYYKKTYPLNKGSGDGNLFRL
                     FVEKNLSLLKQDGNLAYVLPSALMFEDGSLTLRKEILENKTLEYFYSFENRQAIFADV
                     DSRYKFALMLIKNTQANHTHKIKMMFYKTDINSLKNKDEILTLNLKDIKKLSPTHLAL
                     MKLKDKQALEILRKSYNAFQNLSFDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKM
                     IHQFDANFSQATYFLEKAKFDERLKSKELYRAKKATGKELNPKLIKYDREFFRLGYRK
                     IASDTNERTLIASLLPKNCGGADSTYSNIPKQYVLKDDVICMDIVPYERILFVLALFN
                     SLVVDFIIRNMVQINVSKSYLERIPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNR
                     HFDELKQEFNIKNEEIPKTKKAYDILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEK
                     QSEYITLLKTI"
     gene            complement(2634..3824)
                     /locus_tag="RJ272_001320"
     CDS             complement(2634..3824)
                     /locus_tag="RJ272_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDV7382384.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHCTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFKLNKQRILGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(3838..5343)
                     /gene="pta"
                     /locus_tag="RJ272_001321"
     CDS             complement(3838..5343)
                     /gene="pta"
                     /locus_tag="RJ272_001321"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDV7382385.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDSAKLSLDLNTIRIINPLKSEYNQEFASILYEARKSKGMSLEEA
                     RKLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            5433..6131
                     /gene="flgH"
                     /locus_tag="RJ272_001322"
     CDS             5433..6131
                     /gene="flgH"
                     /locus_tag="RJ272_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HDV7382386.1"
                     /translation="MKKVLFYVLPFVFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(6161..7234)
                     /gene="ispG"
                     /locus_tag="RJ272_001323"
                     /gene_synonym="gcpE"
     CDS             complement(6161..7234)
                     /gene="ispG"
                     /locus_tag="RJ272_001323"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDV7382387.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKKRGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
BASE COUNT         2652 a         1225 c          985 g         2416 t
ORIGIN      
        1 gctttaaaag agattacaaa actttaagtg tagaacattt aggcacgatt tatgaaggct
       61 tgctttctta tttttttgaa atagcaaatg aagatattta ctatgtaagt tataaagaaa
      121 aatcaaaaga aatagaatgt tattttgata attatgattt taaaatttta gaaaaatcaa
      181 aaaaagtaga aaaatacacc ttttacaaaa aaggacaaat ttaccttaaa aatactagca
      241 actcaagaaa agcaagcgca agcttttaca cacctcaatc catagctaat tttttaatcc
      301 aaagtgcttt aaaagacaaa ctaaacaatg aaaatatttt gaaatttaaa atactagaca
      361 atgcttgcgg tagtggacat tttttagttg gagttttaaa tgctattaca cacattgttt
      421 tatcagattt tgatcatttt acaaatttaa aagaacttta cgaagaagaa aaagaaaata
      481 ttttaaacta tataaaagat tttgtgcaag actatgaagt agatgagagt gatattttaa
      541 aacgactttt actaaaacgc attatttatg gggtggattt aaaccctttt agcatagagc
      601 ttactaaact tagcctttgg atagatagtt ttatctttac aaccccactt tcttttatag
      661 aacaccacat aaagtgcggc aatgctttga taaattctaa tctaagtgat tttaaagatt
      721 tgataaaaca aaactcaagc aaccttttta caaattccat aacacaagaa tttgaaattt
      781 tacaagaagt atttgaaaaa cttgacaacc taaaagatac caacgaagaa caaatcaaac
      841 aatccaaaca aatctatcaa aatgaaatca caccaaaact taataaacta aatttatatc
      901 taaactatat caacacgctt cattttgtca acaaagaaga attacaaatt ctaaaagccc
      961 taagtcaaga tgatatacaa aatttaagcc aaaatgaaca agcaaaagct atcattagca
     1021 aatatcaaaa agaatttaac ttctttaact atgagttaga atttcctgaa atcacagaaa
     1081 atcaagtctt taaaggcttt gatatcatta taggtaatcc accttgggat aaaactaaat
     1141 ttagtgatag cgatttcttt ccacaataca aaagcgatta tagaagctta atcgctagca
     1201 agaaaaaaga aattcaagac aatttgctag caaaagatta tataaagcaa aattacgaaa
     1261 aacaaaaagc atatataaat gatttaaacg agtattataa aaaaacctat cctttaaaca
     1321 aaggcagtgg agatggaaat ttatttcgtc tttttgtaga aaaaaatctt tctcttttaa
     1381 aacaagatgg aaatttagct tatgtacttc ctagtgcttt gatgtttgaa gatggaagct
     1441 taactttaag aaaagaaatt ttagaaaata aaactttaga gtatttttat agttttgaaa
     1501 atagacaagc tatatttgct gatgtggatt caaggtataa atttgctctt atgcttataa
     1561 aaaacacgca agcaaatcac actcataaaa tcaaaatgat gttttataaa acagatataa
     1621 actcattaaa aaacaaagat gaaattttaa ctctaaattt aaaagatatc aaaaagctaa
     1681 gcccaactca cctagcctta atgaagttaa aagacaaaca agctttagaa attctaagaa
     1741 aatcttataa tgcttttcaa aacttgtctt ttgattatat agattttaga agagaacttg
     1801 atatgacaaa cgataaagat ttgtttatag aagagtttag ggaaggactt ttacccttat
     1861 atgaaggtaa aatgatacat caatttgatg caaattttag ccaagctact tattttttag
     1921 aaaaggctaa atttgatgag cgtttaaaaa gtaaagaact ttatagagct aaaaaagcta
     1981 ctgggaaaga attaaatcct aaattaataa aatacgatag agaatttttt agactcggat
     2041 atagaaaaat tgcaagtgat acaaatgaga gaactttgat agcttcttta ttgccaaaaa
     2101 attgcggtgg agctgatagt acttatagta acattccaaa acaatatgtt ttaaaagatg
     2161 atgtaatttg catggatata gtgccttatg aaagaatttt atttgtttta gctttgttta
     2221 attctttagt ggttgatttt atcataagaa atatggtgca aatcaatgta agcaaatctt
     2281 atttagaaag aattcccctg cctcaaccaa gtgatgaaga aattcaaaac aatgaaattt
     2341 ataaaaccct cgctaaaaat gctttgcttt tacagcttta caatgatcaa aatcgtcatt
     2401 ttgatgagct aaaacaagaa tttaatataa aaaatgaaga aattccaaaa actaaaaagg
     2461 cttatgatat cttaagagca aaaaatgatt tattggttaa agaactttat ggtttaagtg
     2521 atgatgaatt ttcttacatg ataagcactt ttaaagtttt aaatgaaaag caaagtgaat
     2581 atataacctt gctaaaaact atataaatga aagatttata tagtttttaa aatttaattt
     2641 ttaccgataa gttcttctgt aattctagcg atttctaatt cttcatctgt aggaataaca
     2701 agcactttaa ctttagaatt tgcatgattt atcattcttt cgcccaaaat cctttgtttg
     2761 ttaagtttaa aatctaactc gataccaaga tgagctaatc tctcgcatac tttttgtcga
     2821 accaaactat cattttctcc tataccacct gtaaaaataa tagcatcggt ttttggcaac
     2881 acagcaaagt aggatcctat atatttaaca agacgataac aaaacatatc aagagccaag
     2941 cgtgctttat cattaccttg ttctatctct ctttctatat ctctaaaatc attataaccg
     3001 caaattccat atactccact ttttttattc atcagtgtat ctatttcttc tatagttaaa
     3061 cccttaagat gactaacaaa aggtaaaata gcagggtcta aatctccaca acgcgttccc
     3121 ataataagtc cttcaagtgg agtaaagccc atagaagtat ccatactctt acctttttct
     3181 atagcacata cacttgcacc atttccaaga tgagcagaga tgacatttaa ttcattttga
     3241 tctttttgaa gaaattttgc cgctctagaa ctaacataag catgagaagt cccatgaaaa
     3301 ccatatcttc taatattatg cttatcataa aaatcataag gcaaagcata catataagca
     3361 aaatcaggca tagtgcaatg aaaagctgta tcaaaaatag ctgcattagc aacactaggt
     3421 gcagctttga tcattgtttt tatacctgct aaatgcgcag gattatgcaa aggagcaaaa
     3481 atactaaccc tatctatctc tttaagaaca taatcatcca ctaaacaatg ctcgcttaaa
     3541 tttcttcctc catgaactat acgatgaccg cagccatcaa gtgcatttaa atctgctaaa
     3601 attcctgatt ctttaaaaag ctcattaact atactaaggc cttcttcgtg attatttatt
     3661 gttaattctc tttcaaaact ttcattattt aaagtatttt ttaatacaac ctttgaattt
     3721 tgctctccaa ttttttctac caatccactg gctttaacga ttttattatc aaaaaattta
     3781 aatttaatcg atgaagaacc tgaatttaaa accaaaattt tcatttatca ttcctttcta
     3841 ttgagcttgt attgcactta aaattacggt atctacaata tcatctacca aacatccacg
     3901 acttaaatca ttaacaggtt ttttaagacc ttgcaaaata ggaccgattg ctaaagcatt
     3961 agcagttctt tgaactgctt tgtaacaaat atttgctgcg ttaagatcag gaaaaatata
     4021 cacatttgca tgacctgcta tcttagaatt tggcattttc tttgctgcag tttttggatc
     4081 ataagcgcag tcaaactgca taggaccatc tatattcaac tcaggatatt tttctttagc
     4141 aatctttaat gcttctttta caagatctac gctttctcct ttaccgctat caccactaga
     4201 ataagaaagc aaagctattc ttggttcaag tccaaaagat ttagcagtca tagcacttac
     4261 ataggcacta gttgcaagtt gctcagcact tgggcttgga tttacagcac aatcagcaaa
     4321 agctaaaact tgatcttcaa gtcccataaa gaaaattcct gaaacggaac taataccttc
     4381 tttagtttta ataagctgta atgcagggcg aatcgtttca gccgtagtag ttgatgctcc
     4441 actaaccata gcatcagctt ttccagtgtg tataagtaaa gttccaaaat aagttttatc
     4501 ttgaactagc ttcctagcct cttctaaact cataccttta gattttcttg cttcataaag
     4561 aatagaagca aattcttgat tatattctga tttgagtgga tttataatcc gtatagtatt
     4621 taaatcaaga cttaatttag cactatcttg cttgattttt tcttcatcac ccaataaaat
     4681 aagatcaaca actttacttt tcaataaaat ttcagcagct tttaaaattc tctcatcatt
     4741 actttctggc aaaacaacgg tttttttatt ttttatactt tgtttaatca attcatattt
     4801 aaaacgatga ggagttataa aatcatattc tttaagtttt tgcacttctt caaaattaaa
     4861 attttcatta atcaaaacat aattacgacc atctagagca tgatcgaaat atttttgagc
     4921 tataagttta tcttcatcat tgataatagc agcaataggt gtattaagat ttttagctaa
     4981 ttttatacta agatcaaatc catcaagtat tccaaattcg caaaaactat ttacaagcac
     5041 aaaatcgtat ttgcgtttta actcttcgta ttcttctaaa ataacattaa aaaaattatg
     5101 aggatctttg ctaaattctt ccattgcctc tctaaaggta aaaccatagg cgctttttac
     5161 ggtttgattg atattaaatt cttccaacca accctgcaaa acaggaacgc gatgtatgta
     5221 tatcacaggg caataaattg cgatattttt gtaaattttg ctataatttt taagcaaatt
     5281 tgtactaata atagtattta actcatcact tctagatctc atcaaataaa gatttgccat
     5341 cattttctcc ttgaatttat aaatgtggaa cactctttgc tttttctaat tttaacaaag
     5401 aaaaataaaa attcatattt taaaggacga aaatgaaaaa agttttattt tatgtgttac
     5461 cgtttgtgtt ttttggttgt tctgcaacgg ttgatccgca aatttcaatg aaaccacctg
     5521 cttatgtaga agaacttgca ccaaaacaaa gtaataatat agaaagtgcg ccaggatcgc
     5581 tttttggcaa aggagataat cctttatttt cagataaaaa agctatgaat gtaaatgatt
     5641 tagttacagt tgttatacaa gaaagtacca ctcaaagcac acaagctaat aaagcaacaa
     5701 gcagaactaa tacctcaaat ttaggcggag gtgctttaac aggaagttca ggagtggtag
     5761 ctaatgctct taataaagtc aatgcttatt ctaatatagg ctttcaaacc aatagttcaa
     5821 acaactacac aggaacaggc tcgcaaagca gaaatgaaag tttcaatact acaatttcaa
     5881 cacgtgtaat taaaatttta tcaaatggta attattttat cgaaggttca agagagcttt
     5941 taatcaacgg agagaagcaa atcatacaat taagcggtgt tattcgtcct tatgacatcg
     6001 gtcaagacaa tactatagat agtaaatata tagcagatgc taaaattctt tataaaacag
     6061 aaggtgaagt ggatagaagc acaagaaaac cttggggtag caaagttata gaagcgatat
     6121 ggccattcta aaagcaaggt taaaccttgc ttcttggctt ttattctttt acagccctac
     6181 ttttaacctc atcttcaact tcagctaaaa atctatctac aagttcactt tctttcagtt
     6241 tagctacaac ttcaccatgt cttataacaa gtccttgatt tttcccaaag gctatagcca
     6301 catcagcgcc cttagcttca cctaaagcat ttaccacgca acccatgaca ctgatattta
     6361 aaggttcttt tatatgctta gttttttcct ctacgatttt aatcgcactt aacaaatcac
     6421 tttgaatcct accgcaagtt ggacaagaga tgatatttac tccgcttttt tgcactccgc
     6481 tatcttgtaa aatcgccctt gctacacgaa tttcttcttc aagctcaccc gtcatagaaa
     6541 cacgcatagt atcgcctata cctttaagaa gtaaatttcc taaagctata gaacttttta
     6601 cagtgctatg aaatttagtt cctgcttcag ttacccctaa gtgaaaagga taatcacaaa
     6661 gcggtcttaa tctctcataa gcttctatag ttttttgagc atctgaagtc ttcatggaaa
     6721 ttttaatatc aaaaaagtct aaatcctcta aaagcttgat attatacatc gcactttcta
     6781 gcatggcatc gacaccataa ccaaatttat cactaaattg tttttctatg gagccgtgat
     6841 ttacaccgat gcgtataggg ataccccgtt ttttacatgc ttttaccact tctttaatat
     6901 tttctttaga gcctatattg ccaggattta tacgcacgcc atcgataaat tcagcacaat
     6961 atacagccaa attatgatta aaatgaatat ctacgattaa aggtagagga cttttagctt
     7021 taatctcttt taaagccctt gcatcagcca tatccaagca cgccaaacgc actatatttg
     7081 ctcctgcaaa ataaagacga ttgatttgtt ctaaagaacc ttctatatct cttgttttag
     7141 taaaaagcat agattgaact gaaatgggtg catcaccgcc tattaaaaca tttcctactt
     7201 tgatttgtct ggttttaaat cttttatact ccataacttc actctttgaa aaattttaat
     7261 atcaaatttt aacttttt
//
LOCUS       DAPIWV010000085         7210 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.086, whole genome shotgun sequence.
ACCESSION   DAPIWV010000085 DAPIWV010000000
VERSION     DAPIWV010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7210
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.086"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..535
                     /locus_tag="RJ272_001324"
     CDS             <1..535
                     /locus_tag="RJ272_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382388.1"
                     /translation="LASALSAVSFKEDSLKVSFEGYKTKDMIGTKGEFKNVEYKFSKN
                     IKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDTDIKVVFQDVIAGE
                     NKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSKALKALSDVAAGHG
                     GISWPLVDISFNADLAE"
     gene            complement(551..1117)
                     /gene="rsmG"
                     /locus_tag="RJ272_001325"
     CDS             complement(551..1117)
                     /gene="rsmG"
                     /locus_tag="RJ272_001325"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDV7382389.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNLADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(1118..1678)
                     /gene="ribA"
                     /locus_tag="RJ272_001326"
     CDS             complement(1118..1678)
                     /gene="ribA"
                     /locus_tag="RJ272_001326"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HDV7382390.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            1736..2719
                     /gene="hemB"
                     /locus_tag="RJ272_001327"
     CDS             1736..2719
                     /gene="hemB"
                     /locus_tag="RJ272_001327"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDV7382391.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGNITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPAFAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2716..3636
                     /gene="argF"
                     /locus_tag="RJ272_001328"
     CDS             2716..3636
                     /gene="argF"
                     /locus_tag="RJ272_001328"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7382392.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            3633..4124
                     /locus_tag="RJ272_001329"
     CDS             3633..4124
                     /locus_tag="RJ272_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HDV7382393.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            4111..5466
                     /gene="hemN"
                     /locus_tag="RJ272_001330"
     CDS             4111..5466
                     /gene="hemN"
                     /locus_tag="RJ272_001330"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDV7382394.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            5468..6733
                     /locus_tag="RJ272_001331"
     CDS             5468..6733
                     /locus_tag="RJ272_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7382395.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKITKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKTNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            6730..>7210
                     /locus_tag="RJ272_001332"
     CDS             6730..>7210
                     /locus_tag="RJ272_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382396.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKEGKQEVVAIKKHEKLEIFKNLSQED
                     "
BASE COUNT         2589 a          873 c         1341 g         2407 t
ORIGIN      
        1 gttagcttcg gctttaagtg ctgtatcttt taaagaagat agtttaaagg tttcttttga
       61 aggatataaa actaaagata tgataggaac aaaaggtgaa tttaaaaatg tagaatataa
      121 attttctaaa aatataaagg atttggcaag ttatcttaaa ggcgctaaag ctactataaa
      181 gccaagcaat gcttttatgg gtgaaggcaa tgatattata accaataata tcacaaaagt
      241 atttttccct gctttattgg gagatacgga tattaaagtt gtttttcaag atgtgattgc
      301 gggtgaaaat aaaggcgtta tttcagcaaa aattactatg gataaaaaaa gtactattgt
      361 acctttaact tataccatca aagataataa atttgaagct aaaggacaac ttgatttgca
      421 tacttttaaa aatggttcta aagcattaaa agcattaagc gatgttgctg caggacatgg
      481 tggaatttct tggcctttag tggatatcag ttttaatgct gatttagcag aataaaaagt
      541 agccttaggg ctactttaaa atacaatatc ttcttaaatt attttcaaaa atttcataat
      601 cttttatatt ttcaagttct tgataaattt cactaccttt ccataaaata aaaactgtat
      661 tttcatcttt tagatttttg caaatttcaa gcaaaggctt gacatccatt aaggctcttg
      721 aagtgatgat atcagcttta aaggtattct tgtattcttg aactttttct ttgtaaatat
      781 gtaaatttgg aagttcacat tctattttta atgtccgcaa aaaggcagct tttttgggat
      841 tgggttcgaa aagatgaaaa ttgctttgca gtaaaaaagc taaaaataca gctggaaatc
      901 ctgcgccact tcctatatcg gcaagatttt ttgctttaga aaaatcataa aaatctaaaa
      961 ttttaatact atcaaagata ttttcatcta tattttttaa atgagtaaga ttgtgaatgc
     1021 ggttaaattt agataataat tctttataaa tttttacctt ttcttcaaag ttttttaaat
     1081 cgtagttttg caaaaaatca taatctttaa aaatcattta tttaagatgt cccatttgag
     1141 tttgttttat gtttaaatac tctacattaa aacgattagg ttctattaaa atcggtatgc
     1201 gtgtgatgat tttttctttg atagaatcta gcttttcagg gttatttgtg agtaaattaa
     1261 ccttagaaat ttcatagtgt ttgagtataa attctacaat ttcataagtt ctctcatcgg
     1321 ctttaaagcc aagctgatga tttgctttaa tcgtatcaaa acctttatct tgtaaagcat
     1381 aagcattaac cttgttaaaa agccctatac cccttccttc ttgcctaaga taaatcacca
     1441 ttccgccatt cttttctata tattttagtg aaaattcaag ctgttcccca caatcacact
     1501 ttaaacttcc taaagcatct cctgttaagc actctgaatg aattcttaga ttgagtgtgt
     1561 cttttggagt atttttaaat atacataaat gttctttatc attttctttg aaactttgta
     1621 tttggaaatt tccccatttg ctaggtaaat tcgcaatttc tgaaattttt attttcattt
     1681 actactctct ataatcaaat ttatgttaag attttagcaa aaaaaggaca aaaaaatgtt
     1741 taaaagattt agaagattaa ggcttaatga aaacttaaga gccatggtaa gagaaaattc
     1801 tttaagtgta aatgatttga tttatccgct ttttgtggtt aatggaacgg ggataaaaaa
     1861 agaaatttct tctatgcctg atgtgtttca aatgagttta gatgaaattt taaaagagtg
     1921 tcaaaatgta gttaatttag gcattaaagc cattatactt tttggcgttt tggaaaatga
     1981 gaaaaaagac agctgtggaa gcgatgcttt agatgatgaa gggcttgttg caagaagtat
     2041 aagagagatt aagaaaaatt ttccagatct ttttataatc agtgatcttt gtttttgtga
     2101 atacacagat cacgggcatt gtgggattat cgatccaaaa acaaaaagtg tggataatga
     2161 tgtcacttta gaaatttcag ccaaacaagc cttagttcac gcaagagcag gggtagatat
     2221 gatagcacct agtggaatga tggatggtaa tatcactact ttgcgcaaag ctttagataa
     2281 agaaggtttt gaaaatttgc ctataatggc gtattctact aaatttgctt caagttatta
     2341 tgggccattt cgagatgtag cagaatcagc tccaagttat ggagatagaa aaagctatca
     2401 aatggatttt gctaatggta aagaagcttt agaagaaagc ttggaagatg aagcacaagg
     2461 agctgatatt ttgatggtaa aacccgcttt tgcttatctt gatgtggtta aagaaatatc
     2521 ccttcattct aacttgcctt tgtgtgttta taatgtaagc ggagagtatg ctatgttaaa
     2581 ggcagctaaa aatgcaggag tgattgatta tgaaaaagtt ttgtatgaaa ctatgatagc
     2641 ttttaaaaga gcaggggcaa agcttatcat cacttatcat gccaaagaat tagctaaaat
     2701 gttaaaagga gaaaaatgaa acatttttta actttaagag atttttctaa ggaggaaatt
     2761 ttaagccttg taaatcatgc tagcgagtta aaaaaagagc ctaaaaaact tttacaagat
     2821 aaaactttag caatgatttt tgaaaaaaac tctacaagaa caagaatggc ctttgaatta
     2881 gccataacag agcttggcgg aaaggcttta tttttaagta gcaatgattt acaacttagt
     2941 cgtggcgagc ctgtaaagga tacagctagg gtggtagggg cgatggttga ttttgtgatg
     3001 atgagagtca ataaacatga aactttactc gaatttgcaa gatattctaa agcccctgtg
     3061 atcaatgctt taagcgagct ttatcaccct actcaggttt taggagattt gcttactatc
     3121 aaagaatgga ataagatgca aaatggtata gcaaaagttg cttttatcgg agatagtaac
     3181 aatatgtgca attcttggct tattgcggct gcgattttgg gctttgaatt tagtatagct
     3241 ataccaaaaa actataaaat tagccctgaa atttgggaat ttgctatgaa acaggctttg
     3301 atttcaggag ctaaaatttc cttaggctat gataaatttg aagccttaaa ggataaagat
     3361 gtagtcatta ccgatacttg ggtttccatg ggcgaagaga atgaaaaaga acgcaagatt
     3421 aaagaatttg aaggatttat gatcgatgaa aaggctatga gcgttgccaa taaagacgcg
     3481 atattgcttc attgtttgcc tgcttatagg ggttatgaag tgagtgaaga aatttttgaa
     3541 aaacatgcag atgtgatttt tgaagaagca agaaatcgcc tttatgtggt aaaagccttg
     3601 ctttgctttt tggataatca gagaggaaga gaatgaaaga gctagaaaag tatagcactt
     3661 gcttaaaacg cattgatgaa tttagtcaaa atctaggaat aaagaaaaaa gatagaacga
     3721 tttttaaaat gaagcaaagc gagaatgaaa acgaaaaatg tttagttctt gaaaatggaa
     3781 gttttgattc tcctgagcct tggtttgtga tcgatgaaaa cgatgaaatt cacactttgc
     3841 tttctttaca aagtcttaag aatatacttg aaagtttaaa acaaagtcaa aaagagaatt
     3901 ttgaattgcg tttagaaaag gcgatttatc aacaaattcc tgtagatttt aacgatgttt
     3961 ggacggttgc tatggatgag atcaagcaaa aggcgcaaaa tggtaccatg gaagttagta
     4021 ttgatcttga aaaattaatt tctaaaatca aacaagagca tccaaattta tttgtagata
     4081 tgcaagcgat gatagaaagg gtaaaccaaa atgagagatt ataaagcttt tgtaaaatac
     4141 tctaaagcag gaccacgcta cacttcttat cctacagcag tagagtttaa tgcaaatttc
     4201 aaatacgaag aatatataga aattttaaaa aaacaagata gatctttatc gctttatttt
     4261 catttaccat tttgtaggag tgcttgttat ttttgtggtt gcaatgtcat ctatactgca
     4321 aaagaagaga gtaaagaaag gtatttaact tatattttta aagagcttga tattttaagt
     4381 accattttag atactaaaag agaagtggtg caaatgcact ttggtggcgg aactccaact
     4441 ttttttagcg ctaaacaact tcaaagtttg attttaaaaa tcagatctgt ttttggaaat
     4501 ttttctaaag atgcagagat tagctgtgag atcgatccgc gttttttaaa tgaggaacaa
     4561 gccatagttt taacgcaaaa tggctttaat cgtattagct ttggagtgca ggattttgat
     4621 gaaaaagttc aaaaagaaat tcatcgcatc cagtcttttg aattaacaca aaatgcttta
     4681 aatcttgtaa gaaataaagg cataaagtct gtaaatatgg atttaattta tggtttgcct
     4741 tatcaaaatt tacaaagctt tacacaaact ttagaaaaag ttatgctttt aaaccctgat
     4801 cgtttggcga tttttaatta cgctcatgtg ccttggctta agaaaaatat gagaaaattt
     4861 gatgaaaata ccttgccaag tcctgatgtt aagcttgaaa ttttagaatt ttgtgagaaa
     4921 tttttaagca aaaatggtta taaaatgata ggaatggatc attttgcaaa agaaaatgat
     4981 gagcttttta aagctttaga aaatggaact ttgcatagaa atttccaagg ttatactacc
     5041 aaaggcggtg ctgatttagt cggtattggg cttacaagta taggcgaagg gcaaagacat
     5101 tatgcgcaaa attttaaaga tatgtcaagt tatgaagctg cattagatag aggagttttg
     5161 ccttttgaaa gaggcgtagc tttaagcgat gatgatgagc ttagaaaagc agtgattatg
     5221 gagttaatgg caaattttaa gcttgatatc aagtcaatag aaaaagaatt ttgcattgat
     5281 tttcaggagt attttaaaga ggatttaaaa gctttagaag aatacaaaga ttttattaat
     5341 tttgatgaaa attttatcaa agtcaatgaa acaggcgttt tgcttataag aaatattgcc
     5401 atgtgttttg atgcttatat gaaaaacatt agtgaagata aaaaagtatt ctcaaaaacg
     5461 gtgtaagatg aaatttagtc aaataagtga tgcttgtgtt aaatgtggca aatgtatacc
     5521 tgtttgtact atacatgaag aaaatcgcga tgaaattact agtccaagag gatttttaga
     5581 tcttttagct gcttataaag agggaagttt agaacttgat aaagaagcta agaaagtttt
     5641 tgaatcttgt tttttatgca ccaattgtgt tgaagtatgt ccaagtaaat taagagtaga
     5701 taatgccata gaagaagttc gttatgatat agctaaaaaa tttggtatag cttggtataa
     5761 aaaacttatt tttttctttt taagaagacg caaaatttta gatttggtag ctaagcttgg
     5821 ctatgtgttt caaagttgtg cgtttaaaat tcaaaatgag aatgaaaata caggtatgaa
     5881 ggcaagattt tccatgcctt ttgttaaaaa gggaagatta cttacaagtt ttaataaaaa
     5941 aagtttctta aattctaatc caaaatttat caataatgat ggagaaaaaa caataggttt
     6001 ttttgtaggt tgtttggcga attattttta catagatacg gctaatgcag tgcttaaaat
     6061 cactaaggaa ttaaaaatca atgtggattt gatgaaagaa caagtgtgtt gtggagcacc
     6121 gcaatttttt acgggtgatt ttaaaagtgt tgaagttttg gctaaaacaa atattgagta
     6181 ttttgaaaaa aaattagaaa aattagatgc tattatagtt cctgaggcca cttgttcggc
     6241 tatgttaaag atagattatg aacatttttt tataatgcaa aatgatttag actgggcaaa
     6301 acgcgcaaaa tgtgtgtcat ctaagatata tatggctagc gagtattttt ataaatttac
     6361 ttctttggaa gaaattttaa aaacaaaaaa taaatttaat tatagcatta cttatcacga
     6421 tccttgccat gcaagaaaaa tgcaaggggt ttttaaagag ccaagagaac ttttaaaaac
     6481 aaattatcat tttgtagaaa tgagtaattc taatacttgt tgcggttttg gcggggtggg
     6541 tatgcaaacg gattattatg atagagcctt aagtgtaggg cttaaaaaag cacaaatgat
     6601 cgatgaaagt aaggctagtg tggtaagtgc cgagtgttca gcttgcagaa tgcaaatttc
     6661 aaatgcatta gaacaaaatt caagcaaggt tgtttttgct agtcctttag aacttatagc
     6721 aaaagctttg tgatgatgaa gatagtattt aaaggcaaaa gttctgaata tgaaattcaa
     6781 agatcgtgct tttgtgttga tgcttttgtg attaaagata agattgaaga acgagatggt
     6841 gttgatttta tcacttcaaa tgtagatctt ttggaattta gtgatgacag ttttactttt
     6901 gaagaaattg taaaacattt taatatttgt gatagtgaag atatgattat cgttgaagat
     6961 tttgacatga aatcaaacaa agataatcaa aaccaagaag atgatataga acacaacatc
     7021 ctaaaatccg aaaaaataat acatgaaaac acaaaacaaa caagtatgca atttaaaaat
     7081 ttaaaatttt tttcaagaat ttttaaaaat gaaaattttc tttctgattt taaagaaggt
     7141 aaacaagaag ttgttgctat caaaaaacac gaaaaacttg aaatttttaa aaatttatct
     7201 caagaagatc
//
LOCUS       DAPIWV010000086         7202 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.087, whole genome shotgun sequence.
ACCESSION   DAPIWV010000086 DAPIWV010000000
VERSION     DAPIWV010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7202
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.087"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(31..1281)
                     /locus_tag="RJ272_001333"
     CDS             complement(31..1281)
                     /locus_tag="RJ272_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HDV7382397.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(1281..2009)
                     /gene="lptB"
                     /locus_tag="RJ272_001334"
     CDS             complement(1281..2009)
                     /gene="lptB"
                     /locus_tag="RJ272_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDV7382398.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(2002..2409)
                     /gene="tsaE"
                     /locus_tag="RJ272_001335"
     CDS             complement(2002..2409)
                     /gene="tsaE"
                     /locus_tag="RJ272_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDV7382399.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(2406..2651)
                     /locus_tag="RJ272_001336"
     CDS             complement(2406..2651)
                     /locus_tag="RJ272_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HDV7382400.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            2806..4026
                     /locus_tag="RJ272_001337"
     CDS             2806..4026
                     /locus_tag="RJ272_001337"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDV7382401.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4039..4482
                     /locus_tag="RJ272_001338"
     CDS             4039..4482
                     /locus_tag="RJ272_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDV7382402.1"
                     /translation="MKVLLIKDVKAFGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTFKSLGLHEVSVKLGHAIHAKFNINIKAE"
     gene            4482..5024
                     /gene="hslV"
                     /locus_tag="RJ272_001339"
     CDS             4482..5024
                     /gene="hslV"
                     /locus_tag="RJ272_001339"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDV7382403.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHASLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            5021..6340
                     /gene="hslU"
                     /locus_tag="RJ272_001340"
     CDS             5021..6340
                     /gene="hslU"
                     /locus_tag="RJ272_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HDV7382404.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGNLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            6337..>7202
                     /gene="era"
                     /locus_tag="RJ272_001341"
     CDS             6337..>7202
                     /gene="era"
                     /locus_tag="RJ272_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDV7382405.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLN"
BASE COUNT         2639 a         1206 c         1156 g         2201 t
ORIGIN      
        1 gtgtaatggg tttgatagat tgatagaatt ttatccttca agttcatata atttttttct
       61 atctgtagag cttgctatat taagatgttt gcgatatttt gtaatagttc ttcgccctat
      121 atctacttta aattcttctt tgattaattc taaaatttta ctatcgctta aaggtttatt
      181 gcgatcttca ttctttacta aatttgccac aaattcttta acacctacat ttgaagtctc
      241 tccctcttca tcaagagcaa aagcaaaaaa atcacgcaaa gggataagtc ctctttcaca
      301 acttaaatat ttatttgcca cagctcttga tatagtcgaa gcattgcgtt ctaaatcaag
      361 tgctaaatcc ttaaaagtca taggttttat ctcttttccc atgaaaaaat catattgata
      421 ttctactatc ataagcccta ttttataaag agtagctttt ctcatcgcta aagcatcaac
      481 taaatttttt gcttctttga tgtaatgact taaaaaatca tgctctaaac catcagtttg
      541 gattgaaatt tcaggataat aatcatcatt gatttttact ttaatttcac cattttcttt
      601 ataaacaaaa atatcaggaa caattatacg agaatcttca aaatattcca aaaaaggggg
      661 agtgctaaag cgcttaagta cagctaatgc ttctttatat aaaggctctt tggtatagtt
      721 ttgtatattt tcaaaatcca taatcaacat tctacaaaac tcatcaatat cttcatctaa
      781 ctccatattt tcaagagcaa ataaaaatgc ttctttataa tctttagctc ccactcctac
      841 aggatctaaa aatttaaatc ttgctcttac tcgctcaatt tcttccaaag aatactcttt
      901 taaaaattct tcatcgtatt caaaatatcc ttcctcattt aagcattcta taattttttt
      961 tgcaagttct tgagatttgt ttgtaggaaa caaaggagga agaatctgtt catttaaaag
     1021 ctcataaaca ctttttttgg caagtccttt actatccaca aaagccgaat ttacattatg
     1081 tttataaaat gaatcaaaat aattcttacc cttatcatga gtttgtatcg aatcttgaac
     1141 atttaagaaa ggattatcct cagcaaattt atctaaattt tcttttaaat cctctatatt
     1201 tgcttgtaaa atcggcaacc aagagcgtaa agtttgagaa attttagtct tgggtgcttg
     1261 ggtgattttt tgctttaaca tcaatcaagg agtttaaact ccgctcctaa ataatacttt
     1321 ttcacgtctt tattggttgc aatttcatca gcattcccac tagcaagcaa agagcccgat
     1381 cttataacat aagctctatc acaaatagcc aaagtctcac gcacattatg atcggtaatt
     1441 aaaaccccaa tccccaatct tttaagctct ttaattaaag tttgaatttc agccactgct
     1501 ataggatcaa cacctgcaaa aggctcatca agaagcaaaa acttaggttc acacatcaag
     1561 cttctagcga tctcacaacg ccttctttca cctccactta aacttaaacc tttccttaaa
     1621 cgaataggct ctatacttaa gagttcaagc atttgctcaa ctttatcatg taaaattttt
     1681 ttatctttat aaaaaatctg agccgctaaa agcaggttat cttctacact taaatcctta
     1741 aaaatactac tttcttgagg taaataacct atccctgatc tagctctttt gtttaaagga
     1801 tcttttgtca catctaaacc gtctaaaaga acttttccac tacttgggga aataagtcca
     1861 catatcatat aaaaagttgt cgtttttcct gcaccatttg gccctaaaag tcctacaact
     1921 tctccgctat taacctctaa agaaattcca tgtataatct tagttttttt aataattttt
     1981 tctaaattta caatttctaa tttactcata aatttcatac tttcttttgt catctttaat
     2041 gctaatttta atctggatag tagaaattcc aaatttcatt aaagtttttt tcaaattttc
     2101 accgccccat tcaaccaaat gcaaaccttt ttcaaaaaaa ttttcaaata aaccattcgc
     2161 taaaagtcct tctaaacctt cttgataaat atcataatga taaatgcaaa tatcatgatt
     2221 ttcatatctt tgcataatgg aaaaagttgg agaatccacc cttgcatcaa gaccaagaaa
     2281 tttaacccaa gcttgcacta agcttgtttt tccgctagcc aaatctcctt gaagcaaaac
     2341 aacaccttct ttaggcatta tttgaagcat cgttttgatc tcattttttg ctaaaataaa
     2401 ttctttcata attttaccac atattcattt tgtgcgtttt taggaatact tttcgtgcta
     2461 ggtatagcta ggactttata tttttgagtg tattcagtaa aatgtaaagt gataatatca
     2521 cccaccttaa cctctttact cgctttaaca ataacgccat taatccccac tacaccactt
     2581 ttacacatat cttcagaaat agctcttctt ttcgtgatat taactacatt taaaaattta
     2641 tctactctca taaaagcaat tttagcaaaa aaaatcaatt tttggaacaa aatttgctta
     2701 cgcctttgct ttatttttta agaaaatagc aagtaaaaac ttttctttaa tgaaatttgg
     2761 atacaatttt acaattttca aatctatttt aacaaaggat atcttatgaa aaatgaagta
     2821 aaaaaagtag ttttagcgta ttctgggggg cttgatacga gcattatttt aaaatggctt
     2881 caagatgagt ataattgtga agttgtaact tttacagcag atattggtca aggtgaagaa
     2941 ctcgaacctg caagaaaaaa agccctttct ttaggcataa aagaagaaaa tattttcatt
     3001 aaagatttaa gagatgaatt tgttaaagat tatgtatttc ctatgtttag agccaatgcg
     3061 atttatgaag gagaatatct tttaggaaca agtatagcaa gaccacttat agcaaaaact
     3121 caagcacaaa tcgccctgca aacaggtgct gatgcagtaa gtcatggtgc cacaggtaaa
     3181 ggaaatgatc aagtgcgttt tgaacttggt tatcttgctt ttaatcccga tttaaaaatc
     3241 atcgctccat ggcgtgagtg ggatttaaac agtcgcgaaa agctccttgc ttatgcacaa
     3301 aaacacggta ttgatatttc taagaaaaaa ggaaaatctc cttattctat ggacgcaaat
     3361 ttacttcata tttcttacga aggacttgtc ttagaagatc ctgcacacgc acctgaagaa
     3421 gatatgtgga gatggagtaa aagcccaaaa gatgctccaa atgaaagtga aattatagaa
     3481 cttgatttcc aaaaaggaga tttagtagcg ataaatggag aaaaactaag tcctgcagga
     3541 cttttaacca aacttaacga actaggctgc aaacacggta taggacgcct tgatatagta
     3601 gaaaatcgct atgtaggtat gaaaagccgt ggttgttacg aaacaccagg tggtaccata
     3661 cttttaaaag cacacagggc gcttgaaagc atcacgcttg atagagaagc agcacactta
     3721 aaagatgaac tcatgccaaa atacgcaagt ttaatttaca atggctattg gttctcgcct
     3781 gaaagaatga tgcttcaagc cttaatcgat gagtctcaaa ttcacgccaa tggcagagta
     3841 aaactcgagc tttataaagg caatgtgatg gttataggac gagaaagttc gaacgatagc
     3901 ttgtttaacg cagcttattg tacttttgaa gaagatgaag tgtataatca aaaagatgca
     3961 gcaggcttta tcaagcttaa tgctttgcgt tttatcatcg caggaaaaaa tggaagaaaa
     4021 ttttaataaa ggaataaaat gaaagtatta ttaatcaaag atgtaaaagc atttggaaaa
     4081 gcaggagaaa taaaagaagt aaaagacggt tacggacaaa atttcttaat cgctaaaggc
     4141 tttgctaaag cagctactaa tgaagtttta agaaaatatg aaagcgacaa gaaaaaagag
     4201 gctgaaaatt tacgctttga aatcgcaaat ttagaaaaac tcaaagaaga acttagcaaa
     4261 atcactcttg aaatttcaaa acccgtaggt gcaaatggaa gtttgtttgg tggtgtaacc
     4321 aaagatgaaa tcgctcacgc cctaaaagaa caaagccata tagaaatcga taaaaaaagt
     4381 ttagaatgtg acacttttaa aagtcttgga cttcatgaag taagcgtaaa gctcggacac
     4441 gcaatccacg ctaaatttaa tataaatata aaggcggaat aatgtttcac gcaacaacga
     4501 ttttagctta caaaggcaaa aacaaatccg taatcggcgg agatggacaa gtaagctttg
     4561 gaaacacggt attaaaaggc aatgccgtaa aaataagaaa acttaataat ggtaaagttt
     4621 tagccggttt tgcaggctca acagctgatg cttttaatct ttttgatatg tttgaaaatc
     4681 tccttcaaag ttctaaaggc gatcttttaa aagctgccat tgatttttct aaagaatgga
     4741 gaaaagacaa atacctaaga aaacttgaag ccatgatgct tgtacttgat agaaatcaca
     4801 tttttttact ttcaggcaca ggcgatgtgg ttgaacccga agatggacaa atcgcagcca
     4861 taggaagtgg tggaaactat gcactttcag cggctagagc cttagcaaaa catgcaagtt
     4921 tagatgaaga agagcttgta aaatcaagcc ttcaaatcgc gggtgaaatt tgcatttata
     4981 ccaatactaa tatcaaaact tatgtgatcg aggatgagaa atgaatctaa ctccaaaaga
     5041 aattgttaaa tttttagatg attatgtcat aggacaaaaa aaagctaaaa aaatcatagc
     5101 tatagcttta agaaatcgct accgcagaat gcaacttagc cctgagttgc aagatgatat
     5161 agtgccaaaa aatatcttga tgataggttc tacaggcgta ggaaaaacag aaatcgctag
     5221 gcgtttagct aaaatgatgg gctttccttt tatcaaaatc gaagcgagca aatatactga
     5281 agtaggtttt gtaggtcgtg atgtagaaag tatggtaaga gatcttgcca atgcggcttt
     5341 aaatttagta aaaaatgagc aaagagaaaa aaacaaagat aaaatcgatg aatttataga
     5401 aaataaaatt ttagaaaaac ttttgccacc tttaccaaag ggtatcagcg atgaaaaaca
     5461 agaagaatat aaaaatagtc ttgaaaaaat gagaactaaa ctaagaaatg gcaatcttga
     5521 tgaaagcact atagagatag aaatttcgca aaatatgttc gataccaatc ctaacctacc
     5581 tcctgaaatg ggtgcaatgc aagatatagt taaggttata ggtgttggca gtaaaaaagt
     5641 caaaaaagaa atgaaaatca aagacgctaa aaatgcttta aaaaacgaag caggagaaaa
     5701 aatcctagat caagaaagta tcaaaagcga agccttaaaa agagcggaaa atgaagggat
     5761 tatttttatt gatgaaatcg ataaaatcgc tgtttcaagc ggaaattcaa atcgccaaga
     5821 tccaagtaaa gaaggggtgc aaagagactt acttcctata gtcgagggat caaatgtaca
     5881 aacaaaaata ggtactttaa aaaccgatca tattcttttt atcgctgcag gagcttttca
     5941 tcttagcaaa ccaagtgatc ttatccctga acttcaagga cgctttcctt taagagtgga
     6001 attagatagt cttgatgata aagctcttta tgaaatttta acacgcccta aaaattcact
     6061 tttaaaacaa tactctcagc ttttaaaaac tgaaaattta gaacttgaat ttgatgatga
     6121 agctattaaa gaaatagcga aaatagcttc aagagccaat gaagaaatgc aagatatagg
     6181 tgctagacgc ttacatactg tgatagaaaa attacttgaa gatctaagct ttgaagctga
     6241 tgagtatgcg ggtaaaaaat tcgtagtgga taaaaaaatg gtagaagaaa aactcggaga
     6301 catcatagaa aataaagatc ttgcaaggta tattttgtga aaagtggctt tgttagcatc
     6361 atagggcgta ctaatgcagg aaaaagtact ttaatcaatt ccttattaga agaaaaaatc
     6421 gccctagttt ctcacaaaca aaacgccaca agacgtaaaa tcaaagccat agtgatgcat
     6481 gaaaaaaatc aaatcatttt catcgatacc ccaggacttc acgaaagcgg tgctacgctt
     6541 aatcaactgc ttgtccaaag tgctattaaa tctatagggg attgtgatgt gattttattt
     6601 gtggcgagtg tttttgatag tacaaaagac tatgaaaatt ttcttagtct aaacccacaa
     6661 gtaccacata tcatcgcttt aaataaagta gatttaaccg acaatgctac acttttaaaa
     6721 aaacttagcg aatatgcaaa atttagccaa cattttaaag ctatcattcc ttattcttct
     6781 aagaaaaaaa gctataaaaa aggcttgtta gatgagatag taaaatatct tgacgaacat
     6841 gaatattttt atgatcctga atttttaagt gcgagtagcg aaaaagaact ttatagagat
     6901 ttcatacttg aaagtattta tgaaaattta agcgatgagc ttccctatag tagcgaagtg
     6961 cttatcaatc gcaccaaaga cacgcccaat cttttaatcc tagaagccaa tatcatcaca
     7021 gatacaaact ctcacaaggg tatgcttata ggaaaagaag gggcaacttt aaaaagaata
     7081 ggcaaagatg cacgctttaa aatttcaaaa cttgcacaaa aaaaagtact tttaaagctt
     7141 ttcgtaacag tgaaaaaaaa ctggcaaaaa gatgaagaat ttttaaaaaa acttttaaat
     7201 ga
//
LOCUS       DAPIWV010000087         7182 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.088, whole genome shotgun sequence.
ACCESSION   DAPIWV010000087 DAPIWV010000000
VERSION     DAPIWV010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7182
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.088"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..335
                     /locus_tag="RJ272_001342"
     CDS             <1..335
                     /locus_tag="RJ272_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HDV7382406.1"
                     /translation="KKEVVEGHYNINISDKMQVLSEKEMDYKSKDNILFTSNESIGFE
                     SDKNTSMVADNITTIHELKADSEATIQVGETIINAKPDCVIIKAGGVEVIIDSNGLVV
                     KGGELKAE"
     gene            346..1125
                     /locus_tag="RJ272_001343"
     CDS             346..1125
                     /locus_tag="RJ272_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382407.1"
                     /translation="MKKPFYKLKRFYIPCGVLIALIIFISLTYHFLQRPLELIFWDRY
                     YYEKEYQNAKDMYKLFKSNEEEFKKVFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQ
                     ILGLDNAYLKALRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFIN
                     KIDTLPDTYTLMKIAFNADYFLFNLVPFASSLDKNFICSIPQKEQLLENMINSYEKMD
                     LLYKTKLKTEIQEMIYPAIYATKKLNHFIDIAKGRLNACGK"
     gene            1109..1282
                     /locus_tag="RJ272_001344"
     CDS             1109..1282
                     /locus_tag="RJ272_001344"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382408.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNAKIKN
                     YSSGYCKYYCKIA"
     gene            1298..2158
                     /locus_tag="RJ272_001345"
     CDS             1298..2158
                     /locus_tag="RJ272_001345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382409.1"
                     /translation="MKKLFYRLNFLFNTKLKKLTWIVAILFIGYKLLFYTEIKNGYVK
                     VTLRPIVTLNQEGYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDI
                     TNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQINLNKSQEENMQKIMQGFSIVRPF
                     EEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQK
                     YFIGNDHDFKFKKGTVEYWKNKDNKNNHEYIYYPITNCGEVEMRYDFDPPGLYYQLFH
                     DMQWRDEWHR"
     gene            2146..4089
                     /locus_tag="RJ272_001346"
     CDS             2146..4089
                     /locus_tag="RJ272_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382410.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RDEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLKLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPMVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNKSSSSAKKPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIKFDKEKYFSDCYS
                     FKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKGHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNEKRSKKQIANYFYQDEKDTSKGKKAYFYYDDESIKDRFGTLPE
                     GEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKCCVRLYTNKECSKTFKELKIKESNEK
                     ENKKSKKEQSIIKDNLYLYSINEKGEFGNNGSIGMAQAQLLEDLSKQVKFVQSEGENI
                     ISLKVAYPEKIDNKIIFVGKVYE"
     gene            4082..5329
                     /locus_tag="RJ272_001347"
     CDS             4082..5329
                     /locus_tag="RJ272_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382411.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYIELQLEKESDKTLNWSYVEC
                     NSEKKMRSLLDVDCRSIEAKDLKFIASFKGNICGFHLPISRDNEPIKDIKDYKYYIIV
                     FAYDEKKAIPSLEDFHIVIDMSFRVGVGRDEDVKESKLRNDFNSDIIQTNCIFSVLEA
                     VEFLKACQSFKEKAKETNNYEFFKNYPQLAGKIAYIYYRFDLANEKFIKSVSDGDKYL
                     KEREKFVKKFIDVYSDEKFFIIPSYKAKFSEFSNKSDEEKIMFFQEFLEDLVKAFDIE
                     PPIPTIYKEFKQYNNGSYNSVGKKALYLNLKNKKEQILSTFFHEFRHFYIDKNNSKEI
                     KNQHTESIFKLIYSNGYFKFENVVMFWAYDKKCIISNNYTDCVGVKPYKYSIFSDKPA
                     IYWFSPSERDARISTFYFEKYRG"
     gene            5310..6593
                     /locus_tag="RJ272_001348"
     CDS             5310..6593
                     /locus_tag="RJ272_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382412.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEKYFWKFNDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVK
                     KIKNPLWLANKNPNYIKPKFYDGMGGGYYFESPNNLEYQCKIEKDTQILSQEQIISYV
                     KELYSKNTMIIKNYIDAINKNHGIKPFVFSDEIYDQLGEVGILTKEQANNFKDKSYIK
                     KNPILLAMLDYLAKQNKKDEDYLITFDDEYFYAYLVWSLKDFLLELSYGLFQDETKLL
                     FNPAAYMDDTKIYYKNLNEEINKRYEKILLDMGFEGENGYFNDYYDYSFGNNGIFKFN
                     IYDYFAYDEIGVQPIQQSPYVSPRSPFDSPNFVYSDGNYHGDAKLIPSALGKYYFELS
                     YQKGVYIELLRPYYPSIKDLPEGWDNKMLEKANLK"
BASE COUNT         2903 a          817 c         1116 g         2346 t
ORIGIN      
        1 ataaaaagga ggtggttgag ggacattata atattaatat cagcgataaa atgcaagtat
       61 taagcgagaa agagatggat tataaaagca aagacaatat tctttttaca agtaatgaat
      121 ccataggatt tgaaagtgat aaaaatacaa gcatggtagc tgataatatc acaactattc
      181 atgagttaaa agccgatagc gaagcgacta tacaggtagg agaaacaatt attaatgcaa
      241 aacctgattg tgttatcatt aaagcaggtg gagtagaagt aattatagac tctaatggac
      301 ttgtggttaa aggtggagag cttaaagcag agtaaaggat aaacaataaa aaaacctttt
      361 tacaaactta aaagatttta tataccttgt ggtgtgctta tagctttgat tatttttata
      421 agcttaactt atcatttttt acaacgacct ttagagctta tcttttggga tagatattat
      481 tatgaaaaag aatatcaaaa tgctaaagat atgtataaac tatttaaaag taatgaagaa
      541 gaatttaaaa aagtttttaa agagcaaaac ttaaatgaag aattaaaaac aaatcaaaaa
      601 gaattgttaa attatatgca tcatttcaaa agagattcta attttatgca aattttaggt
      661 ttggataatg cttatcttaa agctcttaga gataagacaa gtatatttgg aagaaaaagt
      721 gaaaataatc ttaattattt ttatcttgct tctaatagca ctactaattt agatgaaatg
      781 aataatttta taagcattat agataaatat atcattttta tcaataaaat agatacattg
      841 cctgacactt atacactcat gaaaatagcc tttaacgctg attattttct ttttaatctc
      901 gtcccatttg cttcaagcct agataaaaac tttatttgct ctataccgca aaaagaacaa
      961 ttattagaaa atatgataaa ttcttatgaa aaaatggatt tattatacaa aacaaaacta
     1021 aaaaccgaaa ttcaagaaat gatataccca gcgatatatg caacaaaaaa acttaatcat
     1081 ttcatagata ttgccaaagg aagattaaat gcatgtggaa aataatttaa gtcctgaaga
     1141 tagacaaggt atagaaaatt accttattat tttaaatacg ataagttttc taggcgattt
     1201 gaatataaaa tataacaatc ataatgcaaa gattaaaaat tattctagtg gttattgtaa
     1261 gtattattgt aaaatagctt agattttagg attataaatg aaaaaacttt tttatagact
     1321 taatttttta tttaatacaa aattaaaaaa attaacttgg attgtagcta tattatttat
     1381 cggatataaa ttactttttt ataccgaaat taaaaatggt tatgtaaaag tgactttacg
     1441 tcctatagta acacttaatc aagagggtta ttgcataaaa gaaggtagaa gattaagcca
     1501 aaatgaatta tttgaaagag ctactaaaga ttggcttgaa aaactttata accaagcaca
     1561 tgatccacta gttatgaatg cagatggaga ttggcttgat atcactaatt gctattattc
     1621 aagcaaagaa aaagcaaaga aaggtttaaa ttgtcaattt tacagcaacg gcaaacaatt
     1681 tggtatcgat gatattgcaa aacaaattaa tcttaataaa agccaagaag aaaatatgca
     1741 aaaaataatg caaggcttta gcattgtaag accttttgag gaggaaaaaa ttttaacaga
     1801 tgatttagag cttaaatatt ctttactctt acaagatagg ttaggtgatt ttacttttat
     1861 gccttatgat attagattta ttgtcgttgg tggtgatact ggttattatt caaaatttgg
     1921 ttattctgtt tttgctttaa tgatacaaaa atattttatt ggaaacgacc atgactttaa
     1981 atttaaaaaa ggcactgtag aatattggaa aaataaagat aataaaaaca atcatgaata
     2041 catatattat cccattacaa attgtggcga agttgaaatg cgttatgact ttgatcctcc
     2101 tggattatat tatcaattat ttcatgatat gcaatggagg gatgaatggc atcgttaaat
     2161 ttaaaaggcg attatggagt agaaatttta tcctattatc tttgggggca aagcacaccg
     2221 ccaagtgatt tagccagaaa agataaccgt gtgcttatag gtaaagatta tcaagcaaga
     2281 gatgaaaaag aaataatcat acaagcttca gcacttgatt atatgaaata tgtagataga
     2341 tataccaatg ctacaaattt tgggatattt caaaattttt tcaaaagtgt ttttagtgaa
     2401 aaagaacttg gggaatttaa agataaaata gaaaatgaaa catatatttt agaattagac
     2461 gatatcataa aaactaaggt atatggaggt gtaaatccgt ttcttgatga agataataag
     2521 aataaagata aaagcactaa agataaagaa aataatgaag aaaataaata cgaaaaatac
     2581 gatgaaaata aaatggcagt tagaataatt cattattatt tagatacaaa ttcaggcaat
     2641 tatgctaaaa gagcttttgc ttttggaagc acaagtatag catttaataa agatgtaaaa
     2701 tttcatatta gtgctaaaac ttatgaacct gtttgtattt ccaatctaaa actttatcct
     2761 ttaaaggata attttgattt tgaaagtgat agcagtcttg cagaatttgt aaatttcttt
     2821 ctagaaaagg aattagatcc cttaaaaata ggtagaacgg ttaatattca ttttatagat
     2881 caagaaaaga ttacacctat ggttatttat aaaagagtat ttcaaatact tcaaaaccaa
     2941 tcttttaatt ctttaactcc ttctataact tcacttcgtg aatattataa aacccgtatc
     3001 ctgccatctg gggtattata tttgcaagat gacaatacaa actctcaaac caatttagaa
     3061 cagactatcc tctacaacaa tacaagtttt aacaaaattt caaaagaacc cttaaataaa
     3121 tcctcatcca gtgctaaaaa accttgcttt atcactttat atttaaaaga tgaacacaat
     3181 aaacccattg ctaatgctaa aatcattatc aaaggtttta aacatgatga agctttaaga
     3241 gtagttaatc taaaaagacg cagtgatgaa aagggtaaaa taaaatttga taaagaaaag
     3301 tattttagtg attgttatag ctttaaagta aagcttgatg aaagtgaagc ttattttcct
     3361 actcctttac aaaatgctaa aaggatattt aataattata cccatcacaa agttggactc
     3421 atacttaaat ttaaagcaaa aggtcattta gtttatgatg gatttaatct ctatcattat
     3481 aaaggaaatg aattaattaa ttcttatatg gcaagaagtg gtactgctaa ggcagataat
     3541 gaaaaaagaa gtaaaaagca aattgcaaat tatttttacc aagatgaaaa agatacaagt
     3601 aaaggtaaaa aagcttattt ttattatgat gatgaaagta ttaaagatag atttggcact
     3661 ttgcctgaag gagaatatta tttaaagatt aatgaaatag ctaaagatac taaccctagc
     3721 tttttaaaag attatccctt tgaaatagga aaaacttggg gaaaatgttg tgtaagatta
     3781 tataccaata aagaatgttc taaaactttt aaagaattaa aaataaaaga aagtaatgaa
     3841 aaagaaaata aaaaaagcaa aaaagaacaa agtataataa aagataatct atatctttac
     3901 tctatcaatg aaaagggaga atttggcaat aatggtagca taggtatggc acaagcacag
     3961 ttattagagg atttaagtaa gcaggttaag tttgtgcaga gtgaggggga aaatataatc
     4021 tcactcaaag tggcttaccc tgaaaaaata gataataaaa ttatatttgt aggaaaagtt
     4081 tatgaataaa acactaatat ttcatgaaaa ttcccatatt gatttaaatg cttcttttgc
     4141 accagggact tatatagaat tgcaattaga aaaagaaagc gataaaacgc taaattggag
     4201 ttatgtagag tgcaatagtg agaaaaaaat gcgatctttg ttggatgttg attgtcgttc
     4261 tattgaggct aaagatctta aatttatagc gagttttaaa ggtaatattt gtggatttca
     4321 tttacctata agtagagata atgaaccaat aaaagatata aaagattata aatattacat
     4381 catagtcttt gcttatgatg aaaaaaaggc tatacctagt ttagaagatt ttcatatagt
     4441 tatagatatg agctttagag taggagttgg aagggatgag gatgtaaaag aaagcaaact
     4501 aaggaatgat tttaatagtg atataattca aacaaattgt atttttagtg ttcttgaggc
     4561 tgtagagttt ttaaaagctt gccaaagttt taaagaaaaa gcaaaagaaa caaataatta
     4621 tgaatttttt aaaaattatc cccaacttgc aggaaaaatt gcttatattt attatagatt
     4681 tgatttagct aatgaaaaat ttattaaaag tgtaagtgat ggagataagt atttaaaaga
     4741 aagagagaaa tttgttaaaa aatttataga tgtttattct gatgagaaat tttttatcat
     4801 accaagctat aaagcaaaat ttagtgaatt ttcaaacaaa agtgatgagg aaaaaattat
     4861 gttttttcaa gaatttcttg aagatttggt aaaagctttt gacatagaac caccaattcc
     4921 aactatttat aaagagttta aacaatacaa taacggatct tataatagtg taggaaaaaa
     4981 agcattatat ttgaatttaa aaaacaaaaa agaacagata ttatcaactt tttttcacga
     5041 atttagacat ttttatattg ataaaaataa ttctaaagaa ataaaaaatc aacatacaga
     5101 aagcattttt aaactcatat attctaatgg atattttaaa tttgaaaatg ttgttatgtt
     5161 ttgggcgtat gataaaaaat gcataattag taataattat acagattgtg tcggagttaa
     5221 accttataaa tacagtatat tttcagataa gcctgcaatt tattggtttt ctccaagtga
     5281 aagagatgcg agaataagca cattttattt tgaaaaatat agaggttgat atgttagaag
     5341 tagccataaa gaatatattt aaacataaag atttcttaca aaccagaaaa gaaccttatg
     5401 ctatttattt agccataaat acaaacataa aaagttataa taatatttgt cctagcgaga
     5461 aatatttttg gaaatttaat gatatgaatg agcttgaatg ctataatcca aaatttggca
     5521 tatatcttgg taaaattgtt tttgataaaa aaggcaacaa actcatccca aaatacatac
     5581 ccgctaaatt tgaaaattta gaagaagaag ttaaaaagat aaaaaatcct ttatggcttg
     5641 ctaataaaaa tcctaattat attaaaccta aattttatga tggtatgggt gggggttatt
     5701 attttgaaag tccaaataat ttagagtatc aatgtaaaat agaaaaagac actcaaattt
     5761 taagccaaga acaaatcatt tcctatgtga aagaacttta tagtaaaaac acaatgataa
     5821 taaaaaatta tattgatgca atcaataaaa accatggcat aaaacctttc gtatttagtg
     5881 atgaaattta tgatcaatta ggagaagttg gcattcttac aaaagaacaa gctaataatt
     5941 ttaaagataa aagttatatt aaaaaaaatc caatattgct tgctatgctt gattatttag
     6001 caaaacaaaa taaaaaagat gaagattatt taatcacttt tgatgatgag tatttttatg
     6061 cttatttggt ttggagttta aaagatttct tattagagct ttcttatggt ttgtttcaag
     6121 atgaaaccaa gcttcttttt aatcctgcag cttatatgga tgacacaaaa atatattata
     6181 aaaatttaaa cgaagaaata aataagcgtt atgaaaaaat attgcttgat atgggatttg
     6241 aaggagaaaa tggttatttt aatgattatt atgattatag ctttggcaat aatggtattt
     6301 ttaaatttaa catatatgat tattttgctt atgatgaaat aggagtgcaa ccaattcaac
     6361 aaagcccata tgtttctcct agaagccctt ttgatagccc taattttgtc tattctgatg
     6421 gaaattatca cggagatgca aagcttatcc cttctgcttt aggaaagtat tattttgagc
     6481 tttcctatca gaaaggagtt tatatagaac ttttacgccc ttattatcca agtataaaag
     6541 atttaccaga aggttgggac aataaaatgc tagaaaaagc taatttaaaa taaatatgag
     6601 catccgtgaa taaacccttc tacaaactta aaagatttta tataccttgt ggtatgctta
     6661 tagctttgat tattttataa gcttaactta tcatttttta caacgacctt tagagcttat
     6721 cttttgggat agatatgata tatcgaaatt atctattaat aacgaagaga aaaattttaa
     6781 aacaatgaaa actgtgaatt actcctactt tcgctaacgc ttagaagtag gagcttccta
     6841 actaaagcca agtattctta gctagctcga aaggcttctt gtttatagct tacacctaaa
     6901 ttttcatata aaatattaaa acttatacaa aaatctttca taaattgttt cagaagttaa
     6961 agagtttgtt tggtaaatta cattaagggt ttaagccgca ggctgacccc ctacggctaa
     7021 attgtgaaac ccctgaaagg aggtaaactc aatgaggctc ataaaactca ttctagtggt
     7081 tattatactg ctttgtttat ttatagtcaa ggcatattaa ccaagcgcca ttttggggaa
     7141 actagagtgg gttacctgcg gtatcaaaca aacttttaac ca
//
LOCUS       DAPIWV010000088         7069 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.089, whole genome shotgun sequence.
ACCESSION   DAPIWV010000088 DAPIWV010000000
VERSION     DAPIWV010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7069
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.089"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(93..1031)
                     /locus_tag="RJ272_001349"
     CDS             complement(93..1031)
                     /locus_tag="RJ272_001349"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HDV7382413.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEATAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(1033..2247)
                     /locus_tag="RJ272_001350"
     CDS             complement(1033..2247)
                     /locus_tag="RJ272_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HDV7382414.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAIQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVVGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(2274..2507)
                     /gene="acpP"
                     /locus_tag="RJ272_001351"
     CDS             complement(2274..2507)
                     /gene="acpP"
                     /locus_tag="RJ272_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7382415.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            2617..3285
                     /gene="tenA"
                     /locus_tag="RJ272_001352"
     CDS             2617..3285
                     /gene="tenA"
                     /locus_tag="RJ272_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDV7382416.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(3309..4166)
                     /locus_tag="RJ272_001353"
     CDS             complement(3309..4166)
                     /locus_tag="RJ272_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HDV7382417.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     IFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(4170..5135)
                     /locus_tag="RJ272_001354"
     CDS             complement(4170..5135)
                     /locus_tag="RJ272_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDV7382418.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            complement(5132..6967)
                     /locus_tag="RJ272_001355"
     CDS             complement(5132..6967)
                     /locus_tag="RJ272_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7382419.1"
                     /translation="MGEFSRRDFIKTACISVGALVASSSGVYALDDSSKMDKDANLPS
                     CDVLIIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGVKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
BASE COUNT         2285 a         1484 c          933 g         2367 t
ORIGIN      
        1 tttttgaagt ataaaaaaag aatactttta attaacttaa ttttgataac aattataaat
       61 aataaaatta tttaaaaaag cgaagtaaaa gcctaagcct cttgataggc tccaagcttt
      121 aaaattttct gcatacgatt tgcagaaagt tctcgtacat caatattttc aagttcattt
      181 agagattttt ttacataatc agcaatagct actgctgtag cctctttatt gcgatgtgca
      241 ccatttgtag gctcatctat aacatcatca attaaacctt gagattttaa atcatcagcc
      301 gttaccttca tagccttggt tgcagcttca ctttttgcag gatcattcca aagtattgca
      361 gcacaacctt caggagaaat tactgaaaaa acagaatttt tcatcattgc aagtttatct
      421 gcaaccccta tagctaacgc cccgccacta ccgccttctc cgataactat agcaatggtc
      481 ggtattttca aatcacttaa ttcatataaa tttctagcga tagcttcact ttgtcctctt
      541 tcttcagcac ctattccagg ataagcacct ggagtatcta tcaaaaataa aataggaatt
      601 tgaaatttct ctgcaagtct tgctactctt aaggctttgc gatatccttc aggatgtggc
      661 atcccaaaat ttctagcgat tttatctttt gttccacgtc ctttttgctc accaattaca
      721 attatttttt tctctcctaa ataacccata aaacaaacaa tagcaggatc atctctaaag
      781 gcacgatcac catgtatttc gtgagcgtca tttaaaataa gttcaatata gtcaagagca
      841 taagggcgat ctggatgacg cgctaattgc aaacgctgaa aatcacttaa attcttataa
      901 gttttagaaa tttctttttc aagatttttc tttaaaattg atacagcttc agtatctcct
      961 ttaatctgag cattgataat gtcctcgtca atttgctgaa tatttttttc aaaatctaaa
     1021 taagaagcca tattaatcta cttttttaaa tacaacacag ccatttgtgc caccaaaacc
     1081 aaaagaatta ctcatcacca cttttaaatc tacttttctt gatatatttg gaatataatc
     1141 aagatcacat tcatcatctt ttacaagctg attgattgta ggtggaacta ccccatctct
     1201 taaagccata acactaacaa ctgcttcaat tgcacctgca gcacccaagc aatgacctgt
     1261 ttgtcctttg gtggaactta taagcgggat attattgcca aaaagctctt taattgctgc
     1321 tgtttcattt ttgtcattta caggggttga agttccatgt gcattgatat aatctacctt
     1381 tggattccct gccatattta aagctttttt catagctctt aaaggcccat ctaaagttgg
     1441 tgaagtaata tgatgcgcat ctgcactttc tccaaatcca attaattcag cataaatcgt
     1501 agcaccgcgt tttttagcct cttcatattc ctcaaaaact aaagctccag caccttctcc
     1561 catgacaaaa ccatctcttt ctttgtcaaa tggtcttgaa gcatgctgtg gatcttcatt
     1621 tctagttgat aaagctttca ttgaagcaaa accacctata cccacaggac aaatcgcagc
     1681 ttctgcacct acgactaaca tctttttagc atttcccaaa gctatacttt tataagcttc
     1741 tcctatagca tgagttcctg ctgcacaagc tgtaacacaa gaaatatttg gccctttaag
     1801 tccatgctct atagaaatca aacctcctaa catatttaca agtgccgaag gtatgaaaaa
     1861 aggggaaatt ttacgcggac ctcgctcgga acaaataatg gaattttttt ctatgttagg
     1921 caaacctcca ataccagaag ccgaaacaat gccaaattct tctttatcta attcttcact
     1981 aaatccagca tcctgtattg cttctcttgc tgctttaatt ccaagttgta tgaaacggtc
     2041 aatttttttt acttctttgc catcaacaac ctctaatgga tcaaaatttt taacttcagc
     2101 tgcaatttga acaggaaagt ccgtagcatc aaaaagagta attttattta ctccgctttc
     2161 tccattgcaa attgctttaa atgaactttc tttatctaaa ccaagggcat tgatcatacc
     2221 aatacctgta actacaactc ttttcaagaa taagctcctt gcaagaaaaa aaattatttt
     2281 tttagattgt caatataatt tacaacatct tcaattttaa ttaatttttc agcatcacta
     2341 tctggaattt ctacttcaaa tttttcttct aaagccataa taagctctac aacatctaaa
     2401 gaatcagcac ctaaatcttc aataattttt gattccattt taactgcatc tgcatcaata
     2461 cttaattgct ctactactac tgcttttaca tcatcaaatg ttgccatttg ttctccttca
     2521 aaaaattaaa ataaagcgta ttttactata aaaagcttaa aatatttata gtttttcatt
     2581 atacttgaaa ataaaatatt aaaacataaa ggaaaaatga tgcttttctc taatttaatc
     2641 aaagaaaatc aaaaaatttg gaatgcttat ctacatcatg attttgttaa aaaattggaa
     2701 gataaaagcc taaagcaaga aaattttctt ttttatctca agcaagatta tatttatttg
     2761 cttaattacg caaaatgtta tgcaagatta gcacttaact caaatactgc aaaagaactt
     2821 cgttttgcta tgaaatttca aaattatata gttgaaggag aaatggaact tcatcgtgca
     2881 attttatctc ttggcattaa tgcagatgaa ctcgatataa aagatgaaag tttagtcaat
     2941 atagcctatt cgcgttatat gttaagcgta ggtgaaaatg gagatttttt agatatgtta
     3001 gttgctctta gtgcttgcgc tataggctat gcaaaaatag gtgctgaaat tataaatcgt
     3061 ttaaaaaatg aaaatttaaa agatcatcct tacaaggaat ggattttgac ctatggaagt
     3121 gaaaattttc aaaatgaagc taaagaattt gaagattttg ttaattctta tacttcaagt
     3181 gttggtgcac aaaaattcca aaaactcagc gaaatttttc atactgtaac acgcttagaa
     3241 gtggcttttt gggagcattc tttaagaatg gaattaaatc tttaaacatg ggctttttgc
     3301 ccatgttttt atgcaatttt acttgcatca ataatattat aatctaaacc aaccatttct
     3361 ttagaaagtc ctaatgcaag tcctactaat tgtgataaat gaataatagg caatcttgct
     3421 ttagaattag tataatcttg aaatctttct tgatagatat caagctgcat ttgacaaagt
     3481 ggacaaggtg ttacaacaca atcagcttga ttttcacttg cattattgac aatttgacta
     3541 gacatttttt tcacagattt ttctgcagga taagaagcat gaaaaccaca acaatcaagg
     3601 cgtttttcaa aaggaactat tttagcccct aaaacttcta ctacactttc aaaacttttt
     3661 ggattggttg aactttcttt tttaccgaaa gcatcttcag gtcttaaact atggcaacca
     3721 taaaataaag ctacttttaa atttgaaagc ggctttttca ccttgctttt taaattatcc
     3781 aaatcctcat aaagctccca caaaagactt gtaataggcg ttgaaccttg atatttcatt
     3841 ccaccttgtg ctaaaaaaat attgatgcgt tcttttgcac ccttatcaag agtatttttt
     3901 gctttagtta aagttagcat acaagtacta caagttgtaa gcattggcat tttcatctct
     3961 tctgctaaag caatatttct tgcattagct accaaagtcg caataggatc aacacactgc
     4021 gcttgagaag ccccacaaca actccacccc ttaatttcat tcaacttcca acccaaaata
     4081 ggtgcaatag cttcaagtga aattttagat tcttttgcag cttgagataa aacacaacct
     4141 ggaaaaaaag cgtattcttt ttgcatattt tactccttaa cagcagcttc ttgtgccgcc
     4201 tttatcattt taaccaaatc tttatgacct tctatttcat cctcgccaaa aacatgcata
     4261 ggattcattt ttcctgcacg cataagttta aaagctatat ctgttttacc catagaacct
     4321 ataacaccct cagaacgcaa agcaagataa atttcattca agcgtcctga accttcaact
     4381 aaatctttat aaaaagcttc agcatgatca ggccctaagc cttcatttaa acctttttta
     4441 atcgccatca ctcttaaatt tgctatatca cttactgaac ttataccctt tggacaacga
     4501 tcagcgcact cttgacaatg aacacaaagc caaagtccat tcattacgct gggttttaca
     4561 tgcaacatag gatccttacc tcgagagtct gccgctgcac gccaagcatg agtaaaaaca
     4621 aaaggttgca tataatcgct actatctgct tctaatttat tacactctga ggcacagcta
     4681 ccacataaaa tacaatccca ttgcttgcta atacgatcaa attcttcttg actttgttta
     4741 cagccctttt ccgctgaaaa ttcatttttt gccaccatgg caggacgaat ttttcttaaa
     4801 ttttctatag aaggctccca atccacaatt aaatcagaaa ttactctaaa atttccaagc
     4861 ggagaaatgc gtatacttga aggattatca tattctttta ataaatcttg cattttagta
     4921 tcacaagcaa gataagaatg cccattcaca cgaactgcac aagccccaca aattgcagat
     4981 tgacaagagg cggtaaaatt taaagtaata tcttttgttt ttttgataaa aagcaaaaga
     5041 gagagcagag tttttccttg tatatcctta tcatcaatat cataactttg ttcatatttt
     5101 tccttgccat taaaacgatc tatgataatt ttcattgtac tctccttcca tcaagtgaaa
     5161 actcagttac cacgacatct ttataactaa gttttaattc atcattttct aaatttacaa
     5221 tgctatgttt taagaaattt ttatcatctc gctttggata atcttctcta gtatgagccc
     5281 cacggctttc aagtctattt ctagctgcta aacaagcaca gcgagaaagt aaaatcaaat
     5341 taccaagctc tacataatct gtaaaagcag tattcatcac ttcattagga tttggaatac
     5401 gaattttttc atatctcgct tgtatatctt ctaatttttt tgctagaaga tcgagttttt
     5461 cttgagttct aaaaatcccc atattatccc aattttgact tcctagctct tctcgcaatt
     5521 catacatttc ttgaccattt ccgccattat ttgtaatttc tttaaatcta acctgccatt
     5581 tttgagcaag ttcatgagtt tttacccctt ttccaaaact tgcatcttta gcataatttg
     5641 tcgcaccaat gcctgctaaa tgccctgtta caactgcatc ggctaaagaa tttcccccta
     5701 gtctattagc tccatgtata gaaatgcaag aagcttctcc acctacataa attccagcaa
     5761 ttttagtact catatcttca aatttagcca cttcaattcc acccatagaa taatgcgccg
     5821 ttggacggat aggtacagga gtatctacta aatcaatatt ttcaaaaagc attgcagtgt
     5881 gacgaatttt tggtaaatct tttaaaattt tttcttttcc taagtggcgt acatcgcaca
     5941 aaacataagc tccaagtccc tcgccataac ctctaccttc acgaatttct gtttctatag
     6001 cacgcgcaac cacatctcgc ggtgcaagct ccattttttc atggtaattt ttcataaaac
     6061 gctcaccacg attatttaaa agatatcccc cttcaccgcg cgccgcttct gtaataagag
     6121 ttccaccatt tgcaactcct gttgggtgaa attgtatcat ctcaggatct tcaaaaccaa
     6181 gtcctgctct aagagcagct gccacaccat ctcctgtggc aataaaagga gttgaagttc
     6241 tattataaaa tatccttgtg tatccccctg tagcaatcac caaagctttg cataacacag
     6301 gataaattcc accgctttgt atatctctta aaacgacacc ctcgcatttt ccatccacaa
     6361 cacctatatc caaaagttca tgatccatta aaaatttcac accactacta atagcatcat
     6421 ctaaacaaga atgcattaaa atatgacctg ttttatctgc agaatagtta cagcgtttct
     6481 tagaagctcc tcccattaaa cgctgagcta ctccaccttg ctcatttctt gaaaacaagg
     6541 ttcctataaa atccatatta aaaatagcct ttccagctaa ttcgcaaaat tttaaagccg
     6601 cgtcttgatc taccaaataa gctccgcctt taatagtatc ataagcatgt aatttatagg
     6661 aatctccatt agaaaaatca gtaactccat taattccacc ctctgccata caagttgcgt
     6721 tacgcgatgg catcatcttt gtagctacta caacgcttaa ttttggattt tcttttctca
     6781 ctgcggctgc agcacgcaaa cctgctccac ctgatccaat tatcaaaaca tcgcaagaag
     6841 gtaaatttgc atctttatcc atcttagatg aatcatctaa agcataaact ccacttgaac
     6901 ttgcaactaa agctcctaca ctaatacagg ctgtttttat aaaatctctt ctagaaaatt
     6961 cacccatatc attctcctta tttaaaaaaa ttaataataa tttttaatgt aagtcaatct
     7021 tacataaccg catgccaaaa atccaaaaac aaactctcct ttcaatata
//
LOCUS       DAPIWV010000089         6920 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.090, whole genome shotgun sequence.
ACCESSION   DAPIWV010000089 DAPIWV010000000
VERSION     DAPIWV010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6920
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.090"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            81..305
                     /locus_tag="RJ272_001356"
     CDS             81..305
                     /locus_tag="RJ272_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7382420.1"
                     /translation="MMKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFSKDELSQLKSQNELLKAIKEKLC"
     gene            331..1207
                     /locus_tag="RJ272_001357"
                     /pseudo
     CDS             331..1207
                     /locus_tag="RJ272_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            1207..2770
                     /locus_tag="RJ272_001358"
                     /pseudo
     CDS             1207..2770
                     /locus_tag="RJ272_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            2760..3821
                     /locus_tag="RJ272_001359"
     CDS             2760..3821
                     /locus_tag="RJ272_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDV7382421.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPNFFMPSTACY
                     LHQLLNLSPKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLVCGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNETFFELGSDGRHFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGTGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            3821..4042
                     /locus_tag="RJ272_001360"
     CDS             3821..4042
                     /locus_tag="RJ272_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7382422.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFALKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(4056..5283)
                     /locus_tag="RJ272_001361"
                     /pseudo
     CDS             complement(4056..5283)
                     /locus_tag="RJ272_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865679.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            5344..6852
                     /locus_tag="RJ272_001362"
     CDS             5344..6852
                     /locus_tag="RJ272_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDV7382423.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKKRKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNVLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKSKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHANIKNSACIFKEDI
                     ICFYESEEEIDLKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            6845..>6920
                     /locus_tag="RJ272_001363"
     CDS             6845..>6920
                     /locus_tag="RJ272_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7382424.1"
                     /translation="MFKKAFYKGFKLSNYYDNFGTIEEK"
BASE COUNT         2596 a          962 c         1031 g         2331 t
ORIGIN      
        1 atttataata ctagagaata tgttcaagca atatgtcaag ccttaaccaa tgataaatta
       61 gccatatata agaaagatcg ataatgaaac aattttatga aattttagaa aatatacttg
      121 aaaccaaagt agatgaaaat acaaatttaa gcatggaaaa ctgcaagaac tggacttctt
      181 tagctcatat tgatatcatc atgagtttag aagaagaatt tgaaatcaaa tttagcaaag
      241 atgaattaag tcagctaaaa tctcaaaatg aacttttaaa agctattaag gagaaattat
      301 gttaaaaaaa ctaaaaaact atttaaactc atagaagaaa aaaatgcttt gcataaaaaa
      361 tgtttagatg gattgcaact ttcagatgaa gaatataatg atttagaaaa acttatcatc
      421 tattataaag atacattaaa catcaatcta gaagaacaag ctaaaagtta tatagttgta
      481 ctcaatgaca ctctagaaga aactaaatat tttatagaat ttggaaaata tagatatagc
      541 actttagcag aagtaaaaaa tatggtatat ttcaatgaaa attatatgaa gcaatacatg
      601 gtgggacttg ctatatcttc ttttatttgg aatgctcata ttgaagttag aagatatttt
      661 gctaaatata tagataaaaa acaagatcga aaaagcactt atcttgaaat cggtcctggt
      721 catggagaat tttttgttaa agcactaaga agtcaaaaaa tttatagaat attatggaat
      781 agatatttct cctataagtt gtcaaatgag caaagatatg gtagaaaatc aatttggagc
      841 aattaatcaa aataatttta aatgtgattt tatatgtaaa gatttcacta aatgcaattt
      901 caacaataaa gcagatttag ttgtaatggg agaagtcttg gagcacgtag aacaaccttt
      961 acagtttatg aaagatgtaa aaactttact gaatgatggt ggagaaattt ttgcaaccat
     1021 ccctatcaac gctcctgcta ttgaccatat ttatttattt tcccatcctg atgaagttaa
     1081 agatttgctt aaaaatgcag gtttaaaaat caaagaatgc gaatatttta tggcaaataa
     1141 ttattcttta gaaaaagcat taaaaacaaa aaatgccatt gttatggcag tggttttgga
     1201 aaaataatga atcttttttc acctcattta aaacgcaatg agcttataaa atttgccaaa
     1261 gaattagact ttagtaaaag tcaagatctt cttattaata tccatagaaa tcatactttt
     1321 gaaggagtgc aaagcatcat tgctcctttt ttacattttg ctaatttaag agctgagttt
     1381 aatttcagct cttatgatga tagcttgagt tttgataact ttaaataagc tagtttagaa
     1441 cttttatggc tagatttaac ccgctataaa aataatgtgc aaaattttat agaagaaaga
     1501 cttttagaac taagaaaaat ttcacaaaac cctattttag ttcttagttt aggagaattt
     1561 aaaacagata aaaaaatttt aaattgtgaa atttttaaca tagaaaaact cataaaagag
     1621 tattttgatg aagaagatat tttagactta gctaaagaag aacttacagg ctctaagctt
     1681 aataataaag ccttgatttt cttggcacaa attttaggac ttagtctcat ccctgcactt
     1741 gtaaaacccg ctcttaaagc tcttgtactt gatcttgata ataccttgta tcaaggaatt
     1801 ttaggtgaag agggtataga taatcttaat ttaagtcctt tgcacaaaac cttacaagaa
     1861 aaaattaaaa cttttaaaaa acaagggttt ttacttgccc tagcttcaaa aaatgaagaa
     1921 aaagacgcaa aaaaactttt tgaaataagg aaagatttca tcttacaatg ggatgatttt
     1981 gatgctagaa tgatcaattg ggagccaaaa ggtgaaaata tcttaaaaat tgctaaaaaa
     2041 tttaatataa atactaacgc tatgcttttt atagatgata atatcgccga gcttgaaaat
     2101 accaaaatta caggcgttaa aacactttta tgcgatgaaa atatacttta taaaatcaaa
     2161 ctttttccta atcttttaaa actttcaaat taccaaagaa gatcaaattc gtgccaaaga
     2221 tatagcagcc aatgctttaa gagaagagct taaaagctta agcgatgaag aatattttca
     2281 aaatcttgaa atcagcttaa attttagcaa aaatgatctg caaaatatcc ctcgcattag
     2341 cgaactttta ggcaaaacca atcaatttat cgctaattac acacgcttaa atcaagaaaa
     2401 agtcgcacaa cacatgcaaa aagaactcat tgtaagtgtg agcatgagtg ataaattaag
     2461 cgatagtggg attatcgcta tttttgtttt ttcttgcaaa gaaggaaatt tatttatcga
     2521 tgatctttgc atttcttgta gggctttagg tagaaaactt gaaactagaa tgttttttaa
     2581 agcctttgaa ctagctttac atttctttga tcttaaaaac aataatgcaa ggctttacta
     2641 tcaaaaaggc gaaagaaata tgccattttt aagcttttta gaacaaattt ctaaagaaat
     2701 tgaaaaaaac tcagcccttg tttcatttca aaatttaaac tttaaaggac ttataatcca
     2761 tgaaaactag atttgataaa gccaaaattt caggcatttg cgtaagcgta cctgaacata
     2821 aaatttgcat tgatgatgag ttagaaagcg ttttttcaaa tgatattaaa acccttaaaa
     2881 gaatgaaaaa agtcataggc ttaaacacgc gttatatttg tgatgaaaac acttgtgtaa
     2941 gcgatcttgg caaacacgca gccaatacac ttttacaagg tttaaatata gataaaaata
     3001 gccttgacgc actcattgta gtaactcaaa gtcctaattt tttcatgcct tctacggctt
     3061 gttatttaca ccaactttta aatttaagcc ctaaaaccat agcttttgat ttaggacaag
     3121 cttgtgcagg gtatttatac ggcttatttg tcgctcattc tttaatacaa agtggcttag
     3181 gtaaaatttt gctcgtttgt ggggatactt taagcaaatt catccatcct aaaaatatga
     3241 atttagctcc aatttttggc gatggagtaa gtgcaacttt gattgaaaaa acggatttta
     3301 atgaaacctt ttttgaactt ggaagcgatg gaagacattt tgataaactc atcattccaa
     3361 aaggtgcgat gagaatacct aaagcagata tttttaacga tgattcgctc atgcaaactg
     3421 aggagtttag acaattagaa aatctttata tggacggagc aaatattttt aatatggctt
     3481 tagaatgcga acctaaaagc tttaaagaaa ttttagaatt ttctaaagta gatgaaaaag
     3541 acattgcttt tcatcttttt catcaatcta atgcgtattt ggttgattgt attaaagaag
     3601 agttaaaact taatgatgat aaagttccta atttcatcat ggaaaaatac gctaatttaa
     3661 gcgcttgttc actacctgcc ctactttgtg aactagatac tccaaaagaa tttaaagcga
     3721 gtttgagtgc ttttggtaca gggcttagct ggggaagtgc cgtgctaaat ttcaaggatt
     3781 tatacacaaa agatatttta atttacacaa aggagaaata atgacaaaaa ctgaattttt
     3841 agaagagctt aaagaagcta tgcatagaga tgaagactta aatgaagata tgctacttga
     3901 tgatatagac gagtgggata gtttggcttt tgtatctgtg atggtgcttt ataaaaatct
     3961 ttttgcttta aaaatcacag ccgaggactt gaaaaattgt caaaaagtaa gtgatttaat
     4021 caatttagca aagcttgatt aaaaccttta aggttttaat cttttatcgt taattcaaat
     4081 ttatctccca catctttaaa cataaacact ttatttccac aaggataaga gatggaattt
     4141 tcttgcatga aagattttct tttttgcaat ttttcaagca ttaaaggaag ttcttttcta
     4201 aataaggctt tatcaggtat accacaacca tgatctaaat ttttaataaa ttttccatca
     4261 attttatttt catctatcaa atttaagctt acatcgtaac ctaaaatttt taatatttgc
     4321 atggtttgtt gtttaaaatt ggcaggcgtt agaggatctt tatcgctatg ataactcaca
     4381 taaataatat ttttattttt ttgactttgt aaaattaaat gatctttatt taacaatgtt
     4441 ctaataaaat aattttcatt attaaaaaaa taaggtgaat tttctttacg cgtccagtgg
     4501 gtttttagaa aacaactcac aaaaaaatga tcgccctgca tatacatatc cccattagta
     4561 tctttgcttt taaattccaa ctctctacca ataatataat taagcggtgg aacagccgaa
     4621 cccgaattat caatcacacc atccacatac caaggagcta tctttgctat gagcaaggct
     4681 aagtatcctc cataagaccc ccccccataa atttttggta aatctgcaag ttttggaaag
     4741 cgtttaacta gatcttttaa agcattgata tgatcaatag ctgccataat gccaaaattt
     4801 tgatattctc cacgcgaagg aataaaagtt gcacttagtc tttcttcaaa atcataaggc
     4861 aatcgattta acatttttat tctgtcataa tctcgctcaa atattcacaa tgactaacta
     4921 cagtattatt ggctaattga tcacatggaa tattgtattt acgaagcact ttttctatta
     4981 attttaaatc atcttttgta aaatctgcta atgttgatac ttttcaacat ccgaacgcct
     5041 ttgacaaaaa caatgataaa aaacatgcac tgctacaaca tcaaaatttt tagcaatata
     5101 atttctataa gagtctaaaa aatatatatt tgcattggct ccataacctc ctattataaa
     5161 aactatagct ttaatctctt tttcatcatc ataacttata cggtattcaa gtttgctagt
     5221 tctttttata tttaattcta catcatcaca agaatcaatt tcaaagcttt ggtttatgag
     5281 tatataaagg ccttttttat taatttatcg atattatatt acaaaaaatt aaaaaggtaa
     5341 atcatgacaa ctcatatcta tgatttttta gaaaaaagtt taatcaaatt tagcgaaaaa
     5401 actgcttttg tagaaccctt tgccaaaaaa agaaaggaaa tcacttacaa agactttgat
     5461 ctcttttcta aaaaactagc cagtgaaatt ttaaaaactt taggaaatga taatcctact
     5521 caagctcctg ttttaatcat cttgcctaaa gggattgatt gtttgatttc attttttgga
     5581 gtagcactca gtggaaattt ttatacactt ttagatgaaa aaagtcctaa agaaagagta
     5641 gaaaaagtta tagaagtttt aaaacctaaa ctttttatca cttcaaagga tttaaatttt
     5701 aatttagatt tgcctacgct ttatacacaa gactttgaaa gttttaatat agatgagagt
     5761 ttgctaaaaa atgctaaaga aaaacatata gatactaatt tactctatgt tttctttaca
     5821 agtgggagca caggcattcc taaaggagta agcatagcac ataagagtgt gattgattat
     5881 actttttggg tgtgtgagac ttttaaattt gatgagaatg aaattttagc caatcaagca
     5941 ccattttatt ttgacaatag cattttagat attttttcaa gtgtaaaatc aggagcaact
     6001 ttacaccttt tacctaatca tctttttgcc tttccaaata aaattttaga atgtcttgaa
     6061 aaagaaaaag taagcactat attttgggta ccttcggtgc tgatttattt tgcaaatact
     6121 gaagctttga ataattttag tttaaacgtc ttaaaaaaga tacttttttg tggtgaaatc
     6181 atgcccaata aacagctaaa tatttggcgt aaacacttac ccaatgcttt atttgccaac
     6241 ctttatggtc caacagaaat cactgatgta tgttcttttt atatcatcaa tcgtactttt
     6301 aaagatgaag aacttttacc tataggcaaa gcatgtaaaa acacagaact tttagttttt
     6361 gatgaaaata tgaatttcat aagtcctaaa caaataggtg ttaaagggga gctttttgtg
     6421 cgtggaactt ctttgtcttt agggtattat aatgacaaag aaaaaagcaa acaagctttt
     6481 attcaaaatc ctttacatga taattattta gatttactct ataaaacagg agatatcgtt
     6541 tcttataatg aatttggaga gcttttatgc tacggaagag cagataatca gataaaatat
     6601 atgggacaca gaatagaact tggagaaata gaaagcgtga taaattccca tgcgaatatt
     6661 aaaaatagtg cttgtatttt taaagaagat attatttgtt tttatgaaag tgaagaagag
     6721 attgatctta aagctttttt aaaagataaa ttaccttctt atatgatccc aaaaaatttt
     6781 attaaactcg acaaatttaa gcttaatcaa aatggtaaaa ttgatagaaa ggttttaaaa
     6841 gaacttgttt aaaaaagctt tttataaagg atttaagtta agtaattact atgacaattt
     6901 tggtacaatt gaagaaaaaa
//
LOCUS       DAPIWV010000090         6878 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.091, whole genome shotgun sequence.
ACCESSION   DAPIWV010000090 DAPIWV010000000
VERSION     DAPIWV010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6878
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.091"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            98..382
                     /locus_tag="RJ272_001364"
     CDS             98..382
                     /locus_tag="RJ272_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7382425.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVELGQPSRDNIGADMRSGDTPVFA"
     gene            495..908
                     /gene="ndk"
                     /locus_tag="RJ272_001365"
     CDS             495..908
                     /gene="ndk"
                     /locus_tag="RJ272_001365"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDV7382426.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            909..1262
                     /locus_tag="RJ272_001366"
     CDS             909..1262
                     /locus_tag="RJ272_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382427.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            1286..1432
                     /gene="rpmF"
                     /locus_tag="RJ272_001367"
     CDS             1286..1432
                     /gene="rpmF"
                     /locus_tag="RJ272_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDV7382428.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1438..2424
                     /gene="plsX"
                     /locus_tag="RJ272_001368"
     CDS             1438..2424
                     /gene="plsX"
                     /locus_tag="RJ272_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDV7382429.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNRTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKSSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            2417..3391
                     /locus_tag="RJ272_001369"
     CDS             2417..3391
                     /locus_tag="RJ272_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDV7382430.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKIVDTTDEWITRRTGIKERR
                     IASENENSSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3388..3738)
                     /locus_tag="RJ272_001370"
     CDS             complement(3388..3738)
                     /locus_tag="RJ272_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7382431.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQILLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3735..4811)
                     /gene="serC"
                     /locus_tag="RJ272_001371"
     CDS             complement(3735..4811)
                     /gene="serC"
                     /locus_tag="RJ272_001371"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HDV7382432.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4821..5984)
                     /locus_tag="RJ272_001372"
     CDS             complement(4821..5984)
                     /locus_tag="RJ272_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDV7382433.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5981..6688)
                     /gene="ubiE"
                     /locus_tag="RJ272_001373"
     CDS             complement(5981..6688)
                     /gene="ubiE"
                     /locus_tag="RJ272_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDV7382434.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
     gene            complement(6691..>6878)
                     /locus_tag="RJ272_001374"
     CDS             complement(6691..>6878)
                     /locus_tag="RJ272_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382435.1"
                     /translation="FELAIFLEYFYRFLEIKNLNKLYEKYCKDRDKNIFSKIINNKNK
                     FCKLLKKSSKNLKIYKG"
BASE COUNT         2399 a         1097 c         1011 g         2371 t
ORIGIN      
        1 ttatcaaata atgtaaattt ttgattatca aaatttacat tatttaagaa ttttatgcta
       61 aaatctttta aatcttaata ttaaataagg agaaaaaatg gctgtaaaaa ttacagatat
      121 atgtattgct tgtggttctt gtattgatga gtgtccagtg agtgctatcg ttgatgatgc
      181 taacaatcca gaaggtgaag atagatatta tgtttatgca aacaaatgcg ttgaatgcgt
      241 aggacataat gatcaaccag cttgtgccag tgcttgccca acagatggat gtatagtttg
      301 gagtgctgta gaattaggac aaccaagtcg tgataatatt ggcgctgata tgagaagtgg
      361 ggacactcca gtttttgcat aattttaaaa aattaaaaag ctagagattc ctagcttttt
      421 cttttaattt aactttcttt aaacaaattc aagtataatt ttaagcttta ttaaaataag
      481 gagttattac aaagatggaa aaaactttat ctataattaa acctgatgct gttaaaaaag
      541 gtgttatagg aaaaatttta gatcgttttg aaagcaatgg attaagaatc gctgcaatga
      601 aaaaagttca acttagtaaa gaacaagctg aaaattttta tgctgttcat aaagaaagac
      661 ctttttttaa agacttggtt gaatttatga ttagcggtcc tgttgttgtt tctgtactag
      721 aaggagaagg tgctgtatta aaaaatagag atttaatggg agcgacaaat cctaaagaag
      781 ctaaagcagg aacaattaga gccgattttg ctgagagtat tgatgctaat gctgttcatg
      841 gaagtgacag cttggaaaat gcaaaaatag aaattgattt tttctttaaa ccaaatgaaa
      901 tttgctaaat gaaaatccct ttttctaaga ttaatacaaa ggaatatcct tttaaactta
      961 atcttgaaaa tatgattttt gagggaaatc tagtaaaaat aaatcctaag cttgttaaaa
     1021 taaatgctat tatgcaaggt tttatctata gaccttgtga tagttgtgga actgagttag
     1081 aacttgaaat taaagaaaat ttagaacttt ttgcaagtga tggtattttt aaagatgaag
     1141 caaacgaatt gagcaatact atagaatttt tcgatggaca tattgattta atagaagttg
     1201 ctattagtga gcttgaagct tatttgagtg attattttta ttgcataaat tgcaataatt
     1261 aattaaattt tataaaggag aaaaaatggc agtaccaaag agaagagtga gcaaaactcg
     1321 tgcagctaaa cgcagaactc actataaagt tagtcttcct atgcctataa aagacaaaga
     1381 tggaagctac aaaatgcctc accgtgcgaa tccaacaact aaggaatatt aaaatcaatg
     1441 attaacattg ccattgatgc aatgggtggt gattttggag aaaaacccat tatagaaggc
     1501 gttttaaagg cactagaagc aaaacctttt aacgctatct tagtgggaaa ttctaaaatt
     1561 ctaaaacctt taataccaaa aaaattagaa caatatatac aatacgaaga agctagtgaa
     1621 attttttcga tgaatggaaa tgccacagat gctttaaaaa ataaagaaac aaccatatac
     1681 aaagctatta atttattaaa agaaaaaaaa gtagatgctg tagtttcagc gggtcatagt
     1741 ggagcaagta tgtctttggc taccttaagg cttggaagac ttaaaggtat ttcaagacct
     1801 gctattgcca ctttaatgcc aaatatcgtt aacagaactt tacttttgga tgttggagct
     1861 aatacagatt gtaaagctga aaatttattt caatttgcca taatgggtga agtttatgct
     1921 agagaaatta tgcaaattca aaaaccacgc cttgctttac tttctaatgg tgaagaagaa
     1981 tgcaaaggca atgaacttac caaagaaagt catcagctta tgaaaaaaat tccaaatttt
     2041 ataggtaatg ctgaaggtag agatattttc aatggtgaaa tagatgtttt agtctgcgat
     2101 ggttttgatg gaaacgttat cttaaaggct tgtgaaggtg tagcaacagc tatttttcag
     2161 cttctaaaaa acgaagtaaa gcaatctttt atttctaaaa taggtgcttt acttatgaag
     2221 tcatctttta aaaaattaaa aaaacacaca gattggcaag aatatggcgg agcacccctt
     2281 cttggagtta atggctgcgt gatcataagt catggaaaaa gtgattctag agctattaaa
     2341 aatgcaattt ttcaagctat aaattttagc caatctcata tcaatgaact tatagaaaat
     2401 gaacttggga aatacaatgc ttaaagccgg tcttaaaagt atagcttctt atattccaga
     2461 aaaaatttta agcaatgctg atcttgaaaa aatagtagat accaccgatg aatggatcac
     2521 tagacgcaca ggtattaaag aaagacgcat tgctagtgaa aatgaaaatt ctagcgattt
     2581 gggcacaaaa gctgcattaa aagccataga aagagcaaat ttaaaacctg aagatattga
     2641 tgcgattctt gtagccactt taagtcctga ttattttact atgccttcaa cggcttgtaa
     2701 aattgcttca aatttaggac ttgtaaatat tagtgctttt gatatttcag cagcttgttc
     2761 tggttttatc tatttgcttg aacaagctaa agccttagta gaaagtggtt tgaaaaaaaa
     2821 tgttttaatc gtaggagctg aaaaaacaag ttcaattatg gattacaatg acagaagcat
     2881 ttgcatactc tttggagacg gtgcgggtgc tggagttgta agtttggaca atgaaaatca
     2941 tatccttgat gtacatactg caagcaatgg taattatgga gatcttttaa tgactcaaag
     3001 atcgcaaaaa tcaagtctat gtcaaacact ttctatgcaa atgaaaggca atgaagtttt
     3061 taaaatagca gtaaacacgc ttagcaatga tgttgtagaa attttagcta aaaataacat
     3121 tttagcacaa gaaattgatc tttttattcc tcatcaagct aatctacgca tcattaaagc
     3181 cgtccaagaa aaactcaatc taagcgatga aaaatgtgtg attaccgtac aaaaatatgg
     3241 caatacttca gctgcttcta tacctatggc aatgaatgat gcctatgaag aaggacgact
     3301 taaaaaagga aatctgatct tactagatgc ttttggcggt ggttttactt ggggatctgc
     3361 gcttttaaaa tttggaggag agaattttta attctctctt agctttccaa aagcttgaat
     3421 ttctaccaaa taaccctctg ctaaagcact tcctacacaa gctctaacag gtttaggata
     3481 atttttaatc caagcatcat aaatttcatt cattgcatca aaatcttgca tattagctaa
     3541 caagatttga atttgaatca aatctccttt gcttgcgcct attttttcaa acaaagcatc
     3601 aagttctgca agtgcttctt tggtttgttt tttaatatct ccgctaggtt caaaagccac
     3661 ttgtcctgca gtcttaaaat atttatcaaa aacaataatt tgcgacattc tatcgcactc
     3721 atcaaaacgc tttatcatgc atattttcct tgaaattctt tcataaattc acacaaggtt
     3781 tttacctgat ccaaattaag cgcattataa atacttgcac gaattcctcc taaaattcta
     3841 tgtcctttaa gtcctatcat tccagcttct tcggcttcct ttacaaaaag aggctctaaa
     3901 tctttatttt tagcaatatt aaaactcaca ttcattaaag atctgtcctt tttatctgca
     3961 tgtcctttat aaaatccatt acttaaatca atacactcat aaagcatagc agctttttga
     4021 gaatttttct catgtacttt atcaagtccg ccttgattta aaagccaatc catttcaaga
     4081 ttaaacatat aaatggcaaa ggttggaggc gtattaaaca aggactgatt ctcagcatga
     4141 gtcaaataat ttaacatact aggaatttgt ttatttttag atctttctaa catatcttta
     4201 cggataaaaa tacaacttaa acccgaaatt ccagcatttt tttgcactcc gccataaaaa
     4261 agagcaatat ttgaaaaatc tacttttcta gaaaaaaaat cactcgatgc atccacaatc
     4321 aaaggagttt tagttttagg ataattttga tattgagtgc cgtaaatagt attgttagaa
     4381 caaatataag cataatcagc attatctcta aattccactc taggaatatg attaaaatta
     4441 ctttcctcgc tacttgctac ggttttaaca ttgacaccta aaatttgtgc ttctttaatt
     4501 gctttttttg tccaaactcc tgtatttgca tattcacaaa tcccatttaa agccaaattc
     4561 ataggaatca tagcaaattg taaacttgct ccaccttgta aaaataatac ttcataatca
     4621 tcatttaacc cgtaaagttt tttagctttc tcttgtgctc caaaatgcac ttcttcaaat
     4681 acttttgtgc ggtgagaaat ttccattata gaataacccc taccctgata atcacagagt
     4741 tctttttgag cttgctctaa aatttctaaa ggtaaagtcg atggccctgc actgaaattg
     4801 atttttctca taatctatcc ttataaaatt tttgcttctt tttgagaagt ttgagaactt
     4861 aaaataacga tatcatcact cttaagatct tctaaatttg ctattttacc attttttctg
     4921 atacaaataa actttttgct tttattaaaa aaattctcat gttgcaaata agcattttgc
     4981 aatttatcta attttaattc attataacgc atttgatttg ccaatagatg atttaattgc
     5041 ttttctatat tatggctttg ttttattttt tcatctatta tttttggcaa agaattaaat
     5101 ttgaaaaatt tgcttaaatt taaaagcaaa ttttcataat tttgtatttt ataattccaa
     5161 agttgcatta atttttcttc cattaaatcc aaactttgct ctatatccaa cttagaataa
     5221 aacaaagtat ctatagcagc tgaaggcgtt ggagctctaa aatctgcaac aaaatcacta
     5281 ataacataat caatctcatg tcctatggct gaaataatag gagtttttgc tttaaaaatc
     5341 tctcttgcta aattttcatc attaaaacaa aaaagatctt ctctgcttcc tccaccacgt
     5401 gctataataa gaacatctaa atccatatca tcggcttttt ttaaagcttg tataagagaa
     5461 aaaggagcat tatttccttg agttaaagca tcaaaaatat aaatttttgc caaaaaatat
     5521 tctttttggt gaataagttt taacatatct tgcaaagcag cagaagtttt tgaagtgata
     5581 atgcctactt ttttaggaaa ttttggcaaa gattttttaa agcgtggatc aaaaagtcct
     5641 tctttttgca aacgctcttt taaagccaaa aactgtgctt ccaaatcccc aaaacctgct
     5701 tttttcatac tagtagcgat aaattgataa cgaccacttt caggatataa acttacactt
     5761 ccacaaagct ctaaaaaatt ccccacagct ggtttaaatc cgacttttaa attagctcct
     5821 ttaaacatag cacaagcaat gcttgatctt tcatctttta aatcaaaata ccaatgtcct
     5881 gaaccatgca aagtaatttt tgaaatttct ccacttaaaa ctatatcatc aaaatgtgtt
     5941 tctaataaag cctttgcttt aagatttaat tctgttggtg tcatagtttt tttgctataa
     6001 acattgaact cacgccaaag ctaaaacttt tataatcaag tatttcaaaa ccagcatttt
     6061 taagttctaa gatgaactct tccttactta aaaatccttc aatagagttt ggcaaatact
     6121 cataagcact tttattttta ctgattatcc cacctatact tggtaaaata tttttaagat
     6181 aaaaatctct acaagctgct ataaatccac ccttttctct ttttgtaaat tccaaaacta
     6241 ccaaaatacc atctttttga agtactctag caaattcact taaggctttt tgtctttcta
     6301 caacattgcg aatgccataa ctaatgctta aaatatctaa actttgactt tctaaaggta
     6361 aattttgcgc ccctgcttct ataaattcga catttggaaa tttttctttt gcaacattta
     6421 gcatgccact acttggatca atacctttaa tatttagaat atttttttcc atttttaaag
     6481 cactctcttg ccaaatctct atcatatccc ctgtgccaca ggcaatatca gcgattttta
     6541 aatctttttt taaatacaaa ctcatcactc tttgacaagc ttttttacgc cacgctacat
     6601 cagctccaaa gcttaaaatt ctattcgcct tatcataagt aggtgcaatt tgattaaaca
     6661 tttctataat tttttcttgt ttttgcattt ttatcctttg taaattttca aatttttact
     6721 tgatttttta agcaatttgc aaaatttatt tttattattg attattttcg aaaaaatatt
     6781 tttatcccta tctttgcaat atttttcata aagtttgttt aaatttttta tctctaaaaa
     6841 acgataaaaa tattctaaaa atattgccaa ttcaaaaa
//
LOCUS       DAPIWV010000091         6741 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.092, whole genome shotgun sequence.
ACCESSION   DAPIWV010000091 DAPIWV010000000
VERSION     DAPIWV010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6741
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.092"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(9..419)
                     /locus_tag="RJ272_001375"
     CDS             complement(9..419)
                     /locus_tag="RJ272_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDV7382436.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(426..1169)
                     /gene="fabG"
                     /locus_tag="RJ272_001376"
     CDS             complement(426..1169)
                     /gene="fabG"
                     /locus_tag="RJ272_001376"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDV7382437.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(1241..2719)
                     /locus_tag="RJ272_001377"
     CDS             complement(1241..2719)
                     /locus_tag="RJ272_001377"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HDV7382438.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKIKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            2799..3860
                     /locus_tag="RJ272_001378"
     CDS             2799..3860
                     /locus_tag="RJ272_001378"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDV7382439.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKNNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALIGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            3860..5068
                     /locus_tag="RJ272_001379"
     CDS             3860..5068
                     /locus_tag="RJ272_001379"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDV7382440.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDVMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYENEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(5250..5366)
                     /gene="rrf"
                     /locus_tag="RJ272_001380"
     rRNA            complement(5250..5366)
                     /gene="rrf"
                     /locus_tag="RJ272_001380"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(5622..>6741)
                     /locus_tag="RJ272_001381"
     rRNA            complement(5622..>6741)
                     /locus_tag="RJ272_001381"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         2104 a         1333 c          999 g         2305 t
ORIGIN      
        1 tcaaatcatt aagccttaaa aagcttaaat tctccattca taaattgcat tctagcgctt
       61 aaatgatcaa gataaaaaac ttcaaatttt ggattttgcg gagtttcata aagatttaca
      121 agataaggat attttttaaa catcattttt ttaacttcta aatttggttc aaaaaccgca
      181 ttagctctaa gtcttaaaaa agtcccatct tttgcacaag aacaaaattc aataccatta
      241 taatttttta tatgcttaaa aagtcctttt gtatttgctg tgcaaaaata aattttatct
      301 cccacaagca atggactttg tataggacgc actctaggat ttccacaagt tcctaaagtg
      361 gctaaaaatg ctggtgcatt atcatctaaa aattgtgcta tttcttttaa atccatcatt
      421 tttccttaca tatataaacc accattgatc ttaagcacat cgcctgtcac ataagaggca
      481 taatcactaa gtaaaaacgc tacacaatta gccacttctt caggttctgc aaagcgtttt
      541 aaagggatat tgtcttgata ggtttgtttg atttcatcac ttaaaacttc agtcatatcg
      601 ctttttatga aacctggagt cacacagtta aagcgtaaat ttctacttgc tccttcttta
      661 gcaaaagatt tagtcatagc tatcattcca cctttactag cagaataatt tacttgtcca
      721 gcattgccca tttctccgac aatagaagcg atatttacaa cagcaccaaa acgtttttta
      781 ctcatggttt ttaaagcttc tctacaacct aaaaaagctg agcttaaatt tgtatctaca
      841 acgctactaa agtcctctaa tttcattctt aaagcaagtt tatcatttgt aacgcctgca
      901 ttatttacaa gataacttaa ttctccatca ctctcaacta tagtttttac accgttttca
      961 aactcatctt ctttgcttgc atcaaattta atcacagcag caacgccacc acttgcaata
     1021 atttcatctt ttaaagcatc tgcaagttca ggttttgaac gataattgat ccaaacttta
     1081 agtccaaaac ccgccaaagt ttttgcgata gaagcaccta ttcccttact tgctccagta
     1141 attaaaacat tttttccact aaatttcatt atctatcctt aataagttta attttaaaaa
     1201 ttgcaatctt aacaaatttc ttataaaaaa ggcaaacaaa ctaaaataaa gcctcattca
     1261 tttcttttgg aatttctaag tctaaaattt taagcacgct tgcagcgata ttgctaagcc
     1321 ccatattatc tttaatcttt gaaactccct ttgcttgcac aaaaacaaaa acatcaaaag
     1381 tggtgtgatt ggtaagcaaa tttccttttt catcttgcat agcctcgcaa tttccatgat
     1441 cacttgtaat gataaaagca taatcatgct tttttgcaca ttctataatc tcgcccaaac
     1501 aagtatccac cgcttcgaca gcctttatag cagcattaaa atcacctgta tgtccaacca
     1561 tatctccatt tgcaaaattt accactataa aatcctcacc cttttctatg ccttttttca
     1621 ctgcatcaca cacttcaaaa gcactcattt ggggtttttc atcataagtt tttatcttgg
     1681 ggcttgggat taaaaccctt gtttcatttt ctaaaagctc ttcttttccg ccattaaaaa
     1741 agaaagttac atgggcgtat ttttcggttt ctgcggtatg aagctgacta agccctgctt
     1801 tagaaatcac ttgcgctaaa gtattttcaa ttttttcttt ttcaaaaagc acagggagtt
     1861 taaatttatc atcataaaca ctcatagtaa gtaaattttc aaagattttt tcgcgttcaa
     1921 actctttaaa atccttagaa tttaacactt caacaagttg tttcattcta tcatttctaa
     1981 agttgataaa gataatgcca tcttcttctc tcatgccctt gtaattctca ttttgagctg
     2041 ctttgataaa ctcatcagta acattttcat cgtaagattt ttgtaggtat tctaataaat
     2101 ttggcacttt ataagcctta cctaacaagc actcataata ctcttttacc ctatcccaac
     2161 gcttatctct atccatagca taaaaacgcc cacaaagcgt agcaaaatgc acgcctaagt
     2221 tttcacaaaa ttcttttaaa tcttttatga aatttaagcc actttttgga cttacatcac
     2281 gcccatcagt gattgcgtga gcaaaaactt cattgccatt tttcgcacaa atttcaagca
     2341 tggctttaaa atgcgtatcc atagaatgca ccccgccatc actataaagc cctataatat
     2401 gcactctttt acattttgct aaaagttttt gtaaattctc atttttttca agttctttgt
     2461 tttcaatggc tttattaata cgcactaaat tttgataaat aatacgccca cttcctatac
     2521 acatatgccc tacttcacta tttcccatct gcccttctgg caaacctaca gctaaaccac
     2581 tcgtttttag taaagaattt gggacttcct taaaaagctt ttcataactt ggttttttag
     2641 ctgcttcaaa agcattaaac ttactattct tattataccc tattccatct gtaataatta
     2701 aaacgcattt ttgcttcatt tttctctctt ttataagaat ttttttggtt agattttact
     2761 aaaattaaac ttttaaaaac caaaaagaag gctaggtttt gtattatctt tcagatttaa
     2821 gtcattatgc tttttttact tatattagtg tgcgtgcagg atttgcattt tttatcgctt
     2881 tatgtttgtc tttattttta atgcctaaat ttattacttg ggcaaaagct aaaaatgcta
     2941 gtcaacctat ttacgaatac gccccagaaa ctcataaaac caaatgccat actccaacca
     3001 tgggtgggct tattttcatt agttctgcag taatcgcaag tttattttgt atcaaatttg
     3061 ataatatttt tgctataagt gctttacttt gtttgatact tttttgtttg ataggactca
     3121 tagatgattt aggcaaagtt ctaaaaaaaa ataatcattc aggacttagt ccaagaatga
     3181 agcttttagc acaaatcatc gctggactta tctgcatctt acctttatat tttagttcag
     3241 agcttagcac ggaacttttt ataccttttt ataaacaccc tctttttgat atggaaattt
     3301 ttgccattgc tttttggatt ttggttttaa tttctagctc taatgctgta aatttaaccg
     3361 atggacttga tggcttagct acagttccaa gcattttttc tttatctact ttagggatat
     3421 tcttatattt gagtggaaat ttaaattata gtgaatatct acttttgcca aaaattcaag
     3481 gacttggtga agtagtgatt atttgtgctg cattaatcgg tgctttaata ggatttttat
     3541 ggtacaactg ttatcctgcg caggttttta tgggggatag cgggagttta gctttaggtg
     3601 gattcatagg atttttagct atcattagca aaaatgaaat tttactttta ctcataggtt
     3661 ttgtttttgt tcttgaaact gtttctgtaa ttttacaagt tggaagtttt aaaattttta
     3721 ataaaagagt atttaaaatg gcacctattc atcatcattt tgaaaaagtt ggctgggtag
     3781 aaaataaaat tatagtgcgt ttttggatga tagccttact ttcaaattta cttgcacttg
     3841 catcaataaa gctaagataa tgaaaatttc actttttgga tacggaaaaa ccacacgcgc
     3901 tattgctgaa aatttggtag ataaatttgg gccttttgat atctatgatg atcattttac
     3961 agaaacaaaa aaagatacac taggaaattt acttttaaat cctaatgatt ttgatgataa
     4021 tttaagcgat attgaaattc ctagtccagg ttttccacca aagcacaaac tcattcaaaa
     4081 agcaaaaaat ttacaaagcg aatatgactt tttttacgat gtcatgccaa aatccgtttg
     4141 gataagcgga accaatggca aaaccaccac cacacaaatg gctacacatt tattatcaca
     4201 cattggtgct gttatgggtg gaaatgttgg aactccttta gcagagctta atccttatgc
     4261 aaaactttgg atacttgaaa cttcatcttt taccctacac tacactcata aagctaaacc
     4321 tgaaatttat gcacttttac ctataagtcc tgatcatctt tcttggcatg gaagttttga
     4381 taattatgtt caagataagc taagcgtttt aaaaagaatg aatgaatgtg atgtagtaat
     4441 actgcctaaa atttatgcaa atactccaac aaaagctcat aaaataagct atgaaaatga
     4501 aaaagatcta gctgttaaat ttggcattga tacggaaaaa atttccttta aaagtccttt
     4561 tttactcgat gctatcatgg ctttagctat agaaaaaatt ctacttgata ctttaagcta
     4621 tgagctttta aatagctttg taatggaaaa aaataaactc gaagagctta aagacagtca
     4681 aaataggctt tgggtaaatg acactaaagc tacaaatgaa agtgctgtaa tggctgcact
     4741 tagtcgctat aaagataaaa aaatccatct tatcataggg ggagatgata agggtgtaga
     4801 tcttagcaat ttatttgatt ttatgaaagg atttgatata gaactctatg ctataggtat
     4861 tagtactgaa aaaatgcttg attatgcaaa aaaagcgaat ttgaaagcct ataaatgtga
     4921 agttttatct aaggctgtaa atgaaatttc aaatcactta agagtcaatg aagtggctct
     4981 tttaagtcct gcttgtgcaa gtttagatca gttcaactct tacgcagagc gtggaaaagt
     5041 ctttaaagaa tgtgtgaata aaatttaatt tattttacaa tccatacaaa tatattaaac
     5101 tttccaaacc cctaaaaaca ccctattctc tctaaaaacc ctaaccagca acaaactctt
     5161 ttttaaacac gattctaagc accatctaaa acaacaataa aaataaacat aggatttata
     5221 tataaagtaa gtaatgaaga catttaacaa gtccgcaatg agctactttc cccctgccag
     5281 taaggcgtag tatcatcacc cacgatgtgc ttagcttctt ggttcgggat ggagcaaggc
     5341 gtttccacat ctgtataatc acggacattg ttatttaaat attctttgaa agattgaatt
     5401 taagaataaa acttaatctt ttatttcttt acttttttct ttattctctt tcttcttttc
     5461 ttatctttta tctttgataa gtttttatat agaatactta aaaaacaatg ttaagagcaa
     5521 gttctaatac aaactctact tgaaagattt ctattaaact ctaaatatta tctatattta
     5581 aagtattctt aaaaacctta acaaggaagt gatgctttat taaagataag ccaaacgctc
     5641 tattagtact ggtcagctaa aggactttca tccattacac acccagccta tcaaactagt
     5701 agtcttctag agagcttaga gaagattcat cttagagttg gcttcacgct tagatgcttt
     5761 cagcgtttat cctttccaaa cttagctacg ctgcgatgct cttggcagaa caacagctac
     5821 accagtggtt tgttcaaccc ggtcctctcg tactagggtc aaatctcttc aatcttctta
     5881 cgcccacggc agatagggac cgaactgtct cacgacgttc tgaacccagc tcgcgtaccg
     5941 ctttaaatgg cgaacagcca tacccttggg acctgctcca gccccaggat gcgatgagcc
     6001 gacatcgagg tgccaaacct ccccgtcgat gtgagctctt gggggagatc agcctgttat
     6061 ccccggggta ccttttatcc tttgagcgat ggcccttcca cacagaacca ccggatcact
     6121 aagaccgact ttcgtctctg cttgacttgt atgtcttgca gttaagctgg cttatacctt
     6181 tatactctac gaacgatttc caaccgttct gagccaacct ttgtaagcct ccgttattat
     6241 ttgggaggcg accgccccag tcaaactacc caccagacat tgtcccactt gaggataact
     6301 caagctggtt agctacccaa ataagaaaga gtggtatctc aacaatggct catatacaac
     6361 tggcgtcata tactcaaagc ctcccaccta tcctgcacat tcttatccaa gtagcagtgt
     6421 caagctgtag taaaggtcca cggggtcttt ccgtcttgcc gcgggtagga ggaattttca
     6481 cctccactac aatttcactg gatccctctt tgagacagct cccatctcgt tacgccattc
     6541 atgcaggtcg gtatttaacc gacaaggaat ttcgctacct taggaccgtt atagttacgg
     6601 ccgccgttta ctcgggcttc gatcaagagc ttcgctaatg ctaaccccat caattaacct
     6661 tcgagcaccg ggcaggcgtc acaccctata catcctctta cgagttagca gagtgctgtg
     6721 tttttggtaa acagtcggga g
//
LOCUS       DAPIWV010000092         6677 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.093, whole genome shotgun sequence.
ACCESSION   DAPIWV010000092 DAPIWV010000000
VERSION     DAPIWV010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.093"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            17..196
                     /locus_tag="RJ272_001382"
     CDS             17..196
                     /locus_tag="RJ272_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382441.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNRQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            189..758
                     /locus_tag="RJ272_001383"
     CDS             189..758
                     /locus_tag="RJ272_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HDV7382442.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRARELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(788..1153)
                     /locus_tag="RJ272_001384"
     CDS             complement(788..1153)
                     /locus_tag="RJ272_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HDV7382443.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            1276..2268
                     /gene="pheS"
                     /locus_tag="RJ272_001385"
     CDS             1276..2268
                     /gene="pheS"
                     /locus_tag="RJ272_001385"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDV7382444.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            2265..4586
                     /locus_tag="RJ272_001386"
     CDS             2265..4586
                     /locus_tag="RJ272_001386"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDV7382445.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMSNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIESISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     VVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            4583..5869
                     /gene="aroA"
                     /locus_tag="RJ272_001387"
     CDS             4583..5869
                     /gene="aroA"
                     /locus_tag="RJ272_001387"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDV7382446.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENILKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            5859..>6677
                     /locus_tag="RJ272_001388"
     CDS             5859..>6677
                     /locus_tag="RJ272_001388"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDV7382447.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQSLSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKN"
BASE COUNT         2432 a          790 c         1212 g         2243 t
ORIGIN      
        1 aaagatttaa aaaaatgtgt tagaatttcc caaaaataag gttgtattta tggaaatttt
       61 agatttcatt ctaatagtta tttttgtgtt tttaatgatt gttttggtta taggttttaa
      121 tcgtcaaatg atgcaaaaaa acaaagaaag agaagaaaga tttaaaaaat ataaaaaagg
      181 agaacaaaat gagtaaaaaa gtattaattc cattggctca aggttttgag gaagctgaat
      241 ttataggaat tgcggatgtt ttaaaacgag caagagaatt aaatccagat ttggaagttg
      301 ttatagcttc gttaaacagt gagttattgg taaaaggtgc taatagcatt agtataaaag
      361 cagattgttc tatagaggat gttgatatag aaaatttaga tgccattgct ttggcgggtg
      421 gctttgaagg tatgatgaat cttaagaatt caaatgttat tttaaatatc attaaacaac
      481 ttcatagcaa aaataaaatt gttgccgcaa tctgtgcttc tcctatagtc ttaaatgaag
      541 caggtgtttt agagggcgag tttgcttgct atcctagttg tgaagttgga cttaatggaa
      601 atcgtgttaa caaggctgta gttgtaaata aaaatgttat aacttcagca ggtccagcta
      661 cggcaattct ttttggttta gaactagcta aaaagttatg cggtgatgaa atttatcaaa
      721 aattatatga gggaatgttg ctacctttga caaaatagtt taaatggtag tttttctacc
      781 atttaaatta aaataaagct tgaggatttt ctttttttgt tttttcctta ggcagttcaa
      841 aacctccaag catatgaaaa tgcaaatgaa aaacttcttg tccactattt tttccacagt
      901 ttgttaccaa gcgatatcca cttttatcta cacctaaaag aacagctaat tcttgtatga
      961 aacttgtcat tttggccata agctcaggat caaattcttg aaagtcttta aaatgttttt
     1021 tagggattat aagtatatgt atgggtgctt tgggtgcaat atcatgaaat gctagaaaat
     1081 cgtcactttc aagcacttta ttgcatggaa gtttaccttc aactatgagt tcaaaaattg
     1141 ttttttcttg cattatttat ccttttttat tgttggtttg atacaattat atctttaaag
     1201 tttggttttt atgctgaatt taaaatagtt tttaatagaa ttagaacttg aaatatttta
     1261 tttaaggtaa gaaaattgca aaattttata gaacagattc aaaaatgtga gaatttaaat
     1321 gatttggaag ccattaggat ttccgttctt ggaaaaaaag gtattttaac agaaggcttt
     1381 acaaagctta aagagttaga agatgaggcg aaaaaagaat ttgctgctaa attaaatgca
     1441 caaaaagaaa tatttaatga ggcttattta gccaaattta aagatttgga aaatcttgct
     1501 ttagaagaaa gaatgaaaca agatgcttta aattttaact attttgatga aagtattaca
     1561 acaggtgcct tgcatcctgt tatgagcacc atggataaaa tcatagaata ttttatagct
     1621 ttgaatttta gcatagaaaa agggccctta atagaagatg actttcataa ttttgaagcg
     1681 ttaaatttac ctaaatctca ccccgcaaga gatatgcaag atacctttta ttttgatgat
     1741 aaaaggcttt taagaacaca aacttcgcca gtgcaaatac ggacaatgct tgcgcaaaaa
     1801 cctcctatta ggatgatagc ccctggtgct gtatttagaa gagattttga tattacgcat
     1861 actcctatgt ttcatcaagt tgaaggcctt gtggtggaag aagggcaaaa ggttagcttt
     1921 gcaaatttaa aaagtgtatt ggaagatttt ttgcgttata tgtttggaga tgtgaaagtt
     1981 cgttttcgtc caagtttttt cccatttaca gaaccttctg ctgaagttga tatttcttgt
     2041 gtattttgca aaggaaaggg ttgtagagtt tgcaaacata caggttggct tgaagtttta
     2101 ggatgtggaa tagttgatcc taatgtttat aattttgttg gttatgaaaa tgtaagtggt
     2161 tatgcttttg gattgggagt agaacgtttt gcaatgcttt tgcatcaaat tccagattta
     2221 agatctttat ttgaaggtga tttgagatta ttggagcagt ttagatgata attactaaaa
     2281 gttggttgaa tgattggtta gaacttgaag aaataagttc agataaaata gctaaaactt
     2341 taaactctat aggtatagaa gttgataggg ttggcgcttt aaaggctcca gataaagttg
     2401 ttgtaggcta tgttaaggaa aaaattaaac atgaaaattc agataaatta agcatttgtc
     2461 aagttgatat cggaagtgaa accttgcaaa ttgtctgcgg tgctgcgaat gttgatgcag
     2521 gacaatttgt agctgttgca actaaaggtg ctatcatgtc aaacggtatg gaaataaaag
     2581 aagcaaaatt gcgaggagtg gattcttgtg gtatgctttg ttctagctta gaactgggtt
     2641 ttgaaaaaat caatgaagga attatgcttt tagatgagag tatagggaaa ttagaacttg
     2701 ggagaccttt aaatacttat gaaattttta atgatgagct aatagaagtg gaacttactc
     2761 ctaatagggg tgattgttta agtatttatg gtatagctcg tgatttagcc gcagctttaa
     2821 atttaaattt aaaagaacca aaaccattta aagaaagtga aaatgtttta ggtatcggta
     2881 gaattttgcg cttagcagct gagaaagaac ttaatggact ttataattat cgagccatag
     2941 agctaaaaga agaaattcaa acaaatttat tgcttagttt aagacttgct caaattgaag
     3001 gtttgggaaa aaattccata gaaaatttat taaattatgc aacgcattca actggtgttc
     3061 tttttaatgc ttatgattta agtagttttt ctgaaaaaga tgaagaattt accattaatt
     3121 taagcaagca agtgcatgga gaaacaaaag tatcttacaa agataaactt ttaagcttta
     3181 gcggaatttt ccaaaataat gaaagtagat gtaaagatga ttctaaaata attattattg
     3241 aggctaatta taccgatcca ttggtaattg cagatgctaa aatatatcat aaagatcaag
     3301 atgaaaaaat gctttataga agttttaggg gaagtgaacc taaattaaat ttaggaatgg
     3361 attttttgct tggtattttt gagcagattc caaatcttgt tatttatagt tcttctcaac
     3421 aaattttaac tgacaaagaa ttaccaatca taccaataag tattgaaagt attagcgata
     3481 taatagggca aaatgttgat aaagatgaag tattaaaaat attgaaaaaa ttaggttttg
     3541 aactcatact ttcaggtgaa gggcttataa atgttaaagc acctttacat cgtcctgata
     3601 ttaaaaattt atcagatatt tgcgaggaag ttgtaagaat tataggtatt gataatattg
     3661 cttccaaggg tttggaattt atagaaaaaa atcgtttaaa ttctgcatat aaaaattata
     3721 ttgagttttt gaatttaagg aaaagagcag tagctagtgg ttattttgaa agcttacatt
     3781 atgttttgga taatgaagaa gaacttaaaa gattgggttt tgactctgtt aaattaaaac
     3841 taatcaatcc aattacagca gaacttaata ctttaagaac aaccctttta aatcatttgt
     3901 taaatgcagc aagtttaaat gcaaaaaatt ctaaaaaaat tattaaactt tttgaattag
     3961 gggttgtttt caatgttaat aatcaagaat taaatcgtat cgcatttatc cattctggct
     4021 taaaagaaga agctaaaatt tccaacaagg ccaaacctga atcggtgcaa ttttatgatt
     4081 ttcttttaga cattaaaaat attataggtg attttaaact aaaatcatca aaatataata
     4141 ttttaagccc ttatgaacaa gcagatattt atctatcgga tattaaagta ggttttatag
     4201 gccgtttgca tttaaaaata gaaaatgaga gagatttacc aaaaacatat atttgcgaac
     4261 ttgatttaga tttaatcagg caagatttta aaatagctaa gccttactcc aaattcccag
     4321 ctatcactag agatcttagc gtgttaatac ctaaaggttt tgaatacaat cagattaaaa
     4381 attgtatcga agaattgaat ttagaaatac ttgaaaattt tcgtttagtt gatatttata
     4441 gtgatgaaaa ccttaaagaa ttttatagca ttactataag tttttctttt agggatataa
     4501 ataaaactct agaagataat caagtgaatg aatgtatgga taaaatttta aatactctta
     4561 aaaatttggg tcttgattta agatgaaaat ttacaaattg caaacccctg taaatgctat
     4621 acttgaaaat atagcagcag ataaaagcat atctcatcgt tttgctatat tttcgctttt
     4681 aacacaagaa gaaaataagg ctcaaaatta tctcttagct caagatactt taaacactct
     4741 tgaaattata aaaaatcttg gagctaaaat tgaacaaaaa gattcttgcg tcaaaattat
     4801 accccctaaa gaaattttat ctccaaattg tattttagac tgtggaaatt caggaactgc
     4861 tatgcgtttg atgataggat ttttagcagg aatttctggt ttttttgttt taagtggaga
     4921 taagtattta aacaatcgtc ctatgagaag gataagcaaa ccacttactc aaataggcgc
     4981 tagaatttat ggaagaaatg aggcaaattt agctccactt tgtatagaag gtcaaaaatt
     5041 aaaagctttt aattttaaaa gcgaaatttc ttcggctcaa gttaaaacag ctatgatttt
     5101 atctgctttt agagctgata atgtatgcac ttttagtgaa atttctctta gtcgaaatca
     5161 tagtgaaaac atactaaagg ctatgaaagc tccaataagg gttagtaatg atggcttaag
     5221 tcttgaaata aatcctttaa aaaaaccttt aaaagctcaa aatataatca ttcctaatga
     5281 tccttcttcg gctttttatt ttgttttagc agctattatt ttgcctaaat ctcaaattat
     5341 tttaaaaaat attttgctta atcctactcg tatagaggcg tataaaattt tgcaaaaaat
     5401 gggtgccaag cttgaaatga caataactca aaatgatttt gaaactattg gtgagatcag
     5461 ggtggagtct agcaagctta atggcataga agttaaagat aatatcgctt ggttaataga
     5521 cgaagcgcct gctttggcta tagcttttgc tttggctaag ggtaaatcta gtttaataaa
     5581 tgctaaagaa ttacgcgtta aagaaagcga taggattgct gtgatggttg aaaatctaaa
     5641 gctttgtggt gttgaagcta gagaacttga tgatggtttt gaaatagaag gtggatgcga
     5701 actaaaatct tcaaaaatta aaagctatgg agatcaccgt attgctatga gttttgctat
     5761 tttaggtttg ctttgcggaa tcgagattga tgatagtgat tgtataaaaa cttcttttcc
     5821 aaattttata gagattttat caaatttagg agctaggatt gattattgaa ttagcaaaaa
     5881 actatggttt ttgttttggt gttaaaagag ctattaaaaa agcagaacaa ataaaagatg
     5941 ccgcaactat aggccctctt attcacaata acgaagaaat ttctcgtttg caaaaaaatt
     6001 ttaatgtcaa aactttggaa aatatacaat ctttaagtaa tgaaaaaaag gctattataa
     6061 gaactcatgg tattacaaag caagatttag aagaattgag aaaaaaagat atagaaattt
     6121 ttgatgccac ttgtcctttt gttacaaaac cacaacaaat ttgcgagcaa atgagtaagg
     6181 agggttatga agttgttatt tttggagatg aaaatcatcc cgaagttaaa ggagtcaaaa
     6241 gttatgtaag tacaaaagct tatgtagttt tggataaaaa agaacttcaa aatataaaac
     6301 ttcctaataa aatagctgta gtaagccaaa caactaagaa gcctgagcat tttatggaga
     6361 tagtaaattt tttaatactt aaaaccaaag aagtaagagt ttttaacact atatgtgatg
     6421 caacctttaa aaatcaagat gccattaaag aactctcgct taaaagtgat gttatggttg
     6481 ttgtaggggg taaaaactca gccaatacaa aacaactttt tttaattgca aaaaccaatt
     6541 gtgaagatag ctatctaatt gaaaccgaag aagagttaaa aaaagaatgg tttttggata
     6601 aaaaacattg cggcattagt gcaggtgcta gtactcctga ttggatcata caaaaagtta
     6661 tcgccaaaat aaaaaat
//
LOCUS       DAPIWV010000093         6614 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.094, whole genome shotgun sequence.
ACCESSION   DAPIWV010000093 DAPIWV010000000
VERSION     DAPIWV010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6614
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.094"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..354
                     /locus_tag="RJ272_001389"
     CDS             <1..354
                     /locus_tag="RJ272_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HDV7382448.1"
                     /translation="HNVLTIELEKKQIPKNKKLKIKEDFINLKLPEEFKLIETHKELY
                     LHGMEQKNCVYTRRREIEDGLSAIYSLNYEGGVYTLEIFKRKNKFAIKEIKAKYNEFA
                     NKEVINFVEKSLKAV"
     gene            373..552
                     /locus_tag="RJ272_001390"
     CDS             373..552
                     /locus_tag="RJ272_001390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382449.1"
                     /translation="MNTNKITDLHIQISKEDLKILDLLLKANEYSNIVFYCENDEEHF
                     IFTEVKLGNYFCINR"
     gene            911..2830
                     /gene="tet(O)"
                     /locus_tag="RJ272_001391"
     CDS             911..2830
                     /gene="tet(O)"
                     /locus_tag="RJ272_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7382450.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGTRQLIEVIVSKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMYVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEILLP
                     QRKFIENPLPMIQTTIAVKKSEQREILLGALTEISDCDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTYFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            2882..3055
                     /locus_tag="RJ272_001392"
     CDS             2882..3055
                     /locus_tag="RJ272_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7382451.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            3253..3921
                     /locus_tag="RJ272_001393"
     CDS             3253..3921
                     /locus_tag="RJ272_001393"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382452.1"
                     /translation="MHVPEKGKTFAGEVREETVAWSKDTYQLLKQAEQGKVKSYVQDI
                     ALAVLDCKETATSRETFIRLMNERGYGVDWQDSHKYITYTDLAREQAGEKACKIRDNK
                     LEKYYNMDFGKESMEHEFERNARTAEAEQSKRAASRVKPTEPDRAGKQSAQRSVGDVE
                     RELRGIDEAVKSRTSEGRAEQAERRRAEQEAHQRAEAERRAAEEQQRIASRRYIGRDW
                     EPER"
     gene            4216..4638
                     /locus_tag="RJ272_001394"
     CDS             4216..4638
                     /locus_tag="RJ272_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009247731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382453.1"
                     /translation="MRTEYKHNPPIPYSLHDMRVKKIIIQDKTIVLEFEDGYEKLTEP
                     FEQVEGNITIEGVDFDCTCVMLQSKWGNYGKFNGEKLELERFIKRYKNYSFEIVDELY
                     GYNQVLYSGYLSILETEDLVQMDISIYFTGKIIYDTKE"
     gene            4783..5979
                     /locus_tag="RJ272_001395"
     CDS             4783..5979
                     /locus_tag="RJ272_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repa"
                     /protein_id="HDV7382454.1"
                     /translation="MIRLAVKARGSEVQKTMAKYTKRRDKRGYEWKSAYREKEALMLE
                     RGYPEVSPHDFYRELFPAGSLQQEPEDGKGNIIATQIRPSGKGRTRQWVIDDSLKMLD
                     KVIGDRFGLIPPISFYGKSHTKENAHELFAVVVDVDYVGKQQLKNLLKQFGNGVQLRP
                     TYLVSSGKGVHLYYFLQEPVQLYRNREEVLAELKEAFIRRLWNDTSSIRPDSPDITGI
                     YQGFRCVGSQSKLGVDFPVKAYKLSENRYTLEDIKASIPSCKVDLAPLYEKPRRKSTV
                     TLEEAKELYPEWYEKRIVQGEPKQKSKKQGGTWVCNEALYEWWKRKITEEVKAGGRYF
                     SIMALCSYGLKCGISEQKIRRDAYAFLDHLESLTEDEDNHFSRADVKDGIKKPKMIYF
                     YGILKY"
     gene            6331..>6614
                     /locus_tag="RJ272_001396"
     CDS             6331..>6614
                     /locus_tag="RJ272_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein CotS"
                     /protein_id="HDV7382455.1"
                     /translation="MRSSLEKVIKNYNENFSNKRDNDFAQGLIKYLYENAIIGENDKF
                     FLEKNFQYIRIINEKEKRLINVYFCEKPIIDFFQNAEYEKELQYYGINEK"
BASE COUNT         2325 a         1002 c         1564 g         1723 t
ORIGIN      
        1 cataatgttt taacgataga attagaaaaa aaacaaattc caaaaaataa aaaacttaaa
       61 attaaagaag attttatcaa tttaaaactt ccagaagaat ttaaactaat agaaacgcat
      121 aaagaacttt acttgcacgg aatggagcaa aaaaattgcg tttatacaag aagaagagaa
      181 attgaagacg gcttaagtgc catttatagt ttaaattacg aaggaggagt ttatacattg
      241 gaaattttca aaagaaaaaa taaatttgca attaaggaaa tcaaagcaaa atataatgaa
      301 tttgcaaata aagaagttat aaattttgtt gaaaaaagcc tgaaagctgt ttaaaaaata
      361 caaggagtta aaatgaatac aaacaaaatt acagatttac acatacaaat ttcaaaggaa
      421 gacttgaaaa ttttagattt actacttaaa gccaatgagt attctaatat tgttttttat
      481 tgcgaaaacg atgaagaaca ttttattttt acagaagtaa aacttggaaa ttatttttgc
      541 ataaacagat gattagtggc agggggaaat cctgccgctt tttctgcttt agtttgtcag
      601 cttgacaaat aaagggttaa ggaatataat tagattcagt attatacaag gagttaataa
      661 atatgcggca aggtattctt aaataaactg tcaatttgat agtgggaaca aaaagtagca
      721 gtcccgtttc acttttaata tggggcttag ttttttgtac ccagtttaag aatactttta
      781 tcatgtgatt ttatatgccc gaaaacatat aagtgttttg gggctattgg agttatttac
      841 ccagtgatag gagtatttat cactgggtat ttttatgccc ttttttgggt gttgatagga
      901 ggaaaatcac atgaaaataa ttaacttagg cattctggct cacgttgacg caggaaagac
      961 aacattaacg gaaagtttat tgtataccag tggtgcaatt gcagaactag ggagcgtaga
     1021 tgaaggcaca acaaggacag atacaatgaa tttggagcgt caaaggggaa tcactatcca
     1081 gacagcagtg acatcttttc agtgggagga tgtaaaagtc aacattatag atacgccagg
     1141 ccatatggat tttttggcgg aagtataccg ttctttatcc gtattagacg gagcagtatt
     1201 attagtttct gcaaaggatg gcatacaggc acagacccgt atactgtttc atgcactaca
     1261 gataatgaag attccgacaa tttttttcat caataaaatt gaccaagagg ggattgattt
     1321 gccaatggta tatcgggaaa tgaaagcaaa gctttcttcg gaaattatag tgaagcaaaa
     1381 ggttgggcag catccccata taaatgtaac ggacaatgac gatatggaac agtgggatgc
     1441 ggtaattatg ggaaacgatg aactattaga gaaatatatg tcagggaaac cgtttaaaat
     1501 gtcagaactg gaacaggaag aaaacaggag attccaaaac ggaacgttat ttcccgttta
     1561 tcacggaagc gctaaaaaca atctggggac tcggcagctt atagaagtaa ttgtcagtaa
     1621 attttattca tcaacgcctg aaggtcaatc tgaactatgc gggcaggttt ttaagattga
     1681 atattcagag aaaaggcggc gttttgttta tgtgcgtata tatagcggaa cattgcattt
     1741 gagggatgtt attagaatat ctgaaaaaga gaaaataaaa atcacagaga tgtatgttcc
     1801 gacaaacggt gaattatatt catccgatac agcctgctct ggtgatattg taattttacc
     1861 aaatgatgtt ttgcagctaa acagtatttt ggggaacgaa atactgttgc cgcagagaaa
     1921 atttattgaa aatcctctcc ctatgatcca aacaacgatt gcagtaaaga aatctgaaca
     1981 gcgggaaata ttgcttgggg cacttacaga aatttcagat tgcgaccctc ttttaaaata
     2041 ttatgtggat actacaacgc atgagattat actttctttt ttggggaatg tgcagatgga
     2101 agtcatttgt gccatccttg aggaaaaata tcatgtggag gcagaaataa aagagcctac
     2161 tgttatatat atggaaagac cgcttagaaa agcagaatat accatccaca tagaagtccc
     2221 gccaaatcct ttctgggctt ctgtcgggtt gtccatagag ccgctcccta ttggaagcgg
     2281 agtgcagtat gaaagcagag tttcacttgg atatttaaat caatcgttcc aaaatgcggt
     2341 tatggagggg gttctttatg gctgcgagca ggggctgtat ggatggaaag tgacagactg
     2401 taaaatctgt tttgaatatg gattgtatta tagtcctgta agtacccccg cagactttcg
     2461 gctgctttcc cctatcgtat tggagcaggc tttaaaaaaa gcagggacag aactattaga
     2521 gccatatctc cactttgaaa tttatgcacc gcaggaatat ctctcacggg cgtatcatga
     2581 tgctccaagg tattgtgcag atattgtaag tactcagata aagaatgacg aggtcattct
     2641 gaaaggagaa atccctgcta gatgtattca agaatacagg aacgatttaa cttatttcac
     2701 aaatgggcag ggagtctgct tgacagagtt aaaaggatac cagccagcta ttggtaaatt
     2761 tatttgccaa ccccgccgcc cgaatagccg tatagataag gttcggcata tgttccacaa
     2821 gttagcttaa cagcttgcaa aagtcatata aaatgagatt tgaaaggatt agagactaat
     2881 tatgatgaaa tgcgaatgga tattgtgtcc tgtttgtggg agcaaaaccc gtaataaaat
     2941 taggaaggac actgttttgg agaattatcc cctttattgt ccaaaatgca gacaagaaag
     3001 attgattaaa gttgacaact tgaagataac tgtcatcaaa gagccagacg cttaagacgc
     3061 agagccgatg aaattgtgga acaattcacg aatcatcggc tctttttgtt tcgtatttga
     3121 aagaacaaac tcaccaaata aaaaaaacga tattcgggtg ggttattttg ttatacccta
     3181 aattaccctc tgagtaagca cgaccttaaa gacttaaagg aacggtgcaa cgagcagagc
     3241 tgggaacagg gcttgcatgt gccggagaaa ggaaagacat ttgctggaga agtccgggaa
     3301 gaaacggtgg catggagcaa agacacctac cagcttttga aacaggcaga gcagggaaag
     3361 gtcaaaagct atgtgcagga tattgccctt gcggtgctgg attgtaagga aacagcgacc
     3421 agccgggaaa cctttatccg gctgatgaat gaaagagggt acggggtgga ctggcaggac
     3481 agccacaagt acatcacata taccgactta gccagggaac aggcaggaga aaaggcttgt
     3541 aaaatcaggg ataacaagct ggaaaaatac tacaatatgg attttggaaa ggagagtatg
     3601 gagcatgagt ttgagagaaa tgcacgaaca gcagaagcag agcagtccaa gagagcagct
     3661 tcaagagtta aaccgacaga gccggacaga gctggaaaac agtctgctca aagaagcgtt
     3721 ggcgatgtcg agcgagaact gcgaggaatt gatgaagcag tcaaatcaag aacaagtgag
     3781 ggcagagcag aacaggcaga gagacgcaga gcagaacagg aagctcatca gcgagctgaa
     3841 gcagagcgta gagctgctga agaacagcaa cgaattgctt caagacgcta tatcgggcga
     3901 gattgggagc ctgaaagatg aggttaagga aaacaccgtc caagaggtta gaaaggcgtt
     3961 acaggcgaat atagaggcta tacagagggc tacaaagctt cttgagaagc agtctgatac
     4021 acttacgagc gtgatgaagc agaagatccg ggagcttgag gaaagtaaga acagtttttt
     4081 tagatatgag ggcttgaagt tgtacctgtt ttggggcggt atggtctgca atattttagt
     4141 gtttcttatg ctgttgtatg gtatgattag taagtaaaaa gaaatcgata aattagaatt
     4201 tgacggggag gtctcatgag gacagaatat aaacacaatc cgcccattcc atatagtctg
     4261 catgatatgc gggtcaaaaa gattataatt caagataaaa caatagtcct tgaattcgag
     4321 gacggatatg aaaaacttac agaacctttt gaacaggtcg agggaaacat cacaatcgaa
     4381 ggtgtggatt ttgattgtac ctgcgttatg ttgcagagca aatggggaaa ctatggaaaa
     4441 ttcaacggtg agaaattaga actggaacgc tttataaaga gatacaaaaa ctatagcttt
     4501 gaaattgtag atgaattata cgggtataat caagtattgt attctggtta tttatctatc
     4561 ttagaaacag aagatttagt tcaaatggac atttcaattt actttacggg caaaattatt
     4621 tacgatacaa aagagtaaca aattccagtt tgtcggtacg aagaaaaagg tgcaaaaatg
     4681 tattgataag attagcggtc aaggcgagag ggagtgaggt gtagatattg acatcaaaaa
     4741 ggcactccct tatacttgac ggaaaaaggt aaaaaaaact cattgataag attagcggtc
     4801 aaggcgagag ggagtgaggt gcaaaagact atggcaaaat acaccaaaag gagagataaa
     4861 agagggtatg agtggaagtc tgcttatcgg gagaaagaag cccttatgtt ggagagggga
     4921 tacccggaag taagtcctca tgatttctat cgggagttgt ttccggctgg cagtctccag
     4981 caagagccgg aggacggaaa aggtaatatt atagcgacac agattagacc gtctggcaaa
     5041 ggaagaaccc ggcagtgggt aattgatgat agtctgaaaa tgctggataa ggtcatagga
     5101 gataggtttg ggctgatacc gcctattagt ttttacggaa agtcacacac gaaagagaac
     5161 gctcatgagc tgtttgcggt ggtggtggac gtggattatg taggcaaaca gcagttaaag
     5221 aacctgttga agcagtttgg gaatggtgtg cagcttcgtc cgacttatct tgtcagctcc
     5281 ggcaaggggg tacatcttta ctatttcttg caggagccgg ttcagttgta tcgaaaccgg
     5341 gaagaagtgc ttgcggagct gaaagaagcc tttattcggc ggctatggaa tgataccagc
     5401 tctatccgtc cggacagccc ggatataacc ggaatttatc aaggtttccg gtgtgtgggg
     5461 agtcagtcga agctgggtgt agatttccca gtaaaagcct ataagctgtc agagaaccgt
     5521 tacacgctgg aggacataaa agccagcata ccgagctgta aggtagacct tgctccgttg
     5581 tacgagaagc cgagaagaaa aagtaccgtt acgctggaag aagcaaagga gctgtacccg
     5641 gaatggtatg agaagcggat cgtgcaggga gagccgaagc agaaaagtaa gaagcagggc
     5701 ggtacgtggg tatgtaacga agctttatat gagtggtgga aacggaaaat aaccgaggaa
     5761 gtgaaagccg gagggcgtta cttttctatt atggcgttgt gctcttatgg cttgaagtgt
     5821 ggcatatccg agcagaagat acggagagac gcctatgcgt tcctggacca tttagagagc
     5881 cttaccgagg acgaggacaa ccatttcagc cgggcagatg tgaaagacgg tataaagaag
     5941 ccaaagatga tttattttta tggtattttg aaatattaga aaaaaatgaa atcaagatat
     6001 atcccaaaaa aatgacttat aatcaaatgc tagaagagtg taagaaaaac gatatataca
     6061 ttataaagcc attatactct ttgggatata cctacaataa taatagggaa gattttaaga
     6121 actacaacta aaataagtca aaaggaataa gtttgaaaaa tactatgtat tcatatttgc
     6181 tcaatgataa aatcaaaaat cattctatga ttttatgcac agaaatcgag tgcaaaaaat
     6241 gcggagaaaa gatttatgtt gagtttcagc cgaatgaaaa atttattttc aaatgtccta
     6301 attgctcgag aaaaaataga aaggtttttt atgcgttcta gcttagaaaa agtgataaaa
     6361 aactataatg aaaatttttc aaataaaaga gataatgatt ttgcacaggg tttaataaag
     6421 tatctttacg aaaatgctat tataggagaa aatgataaat tttttttaga gaaaaatttt
     6481 caatatatta ggataatcaa tgaaaaagaa aaaagattga ttaatgtgta tttttgcgaa
     6541 aaaccaataa ttgatttttt tcaaaatgca gaatatgaaa aagaattgca atattatgga
     6601 ataaatgaaa aaga
//
LOCUS       DAPIWV010000094         6468 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.095, whole genome shotgun sequence.
ACCESSION   DAPIWV010000094 DAPIWV010000000
VERSION     DAPIWV010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6468
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.095"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(8..745)
                     /locus_tag="RJ272_001397"
     CDS             complement(8..745)
                     /locus_tag="RJ272_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7382456.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(738..1964)
                     /locus_tag="RJ272_001398"
     CDS             complement(738..1964)
                     /locus_tag="RJ272_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382457.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQGDKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2091..2675
                     /locus_tag="RJ272_001399"
     CDS             2091..2675
                     /locus_tag="RJ272_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDV7382458.1"
                     /translation="MQTIDQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(2719..3102)
                     /locus_tag="RJ272_001400"
     CDS             complement(2719..3102)
                     /locus_tag="RJ272_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382459.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3177..3512)
                     /locus_tag="RJ272_001401"
     CDS             complement(3177..3512)
                     /locus_tag="RJ272_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382460.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3502..5079)
                     /locus_tag="RJ272_001402"
     CDS             complement(3502..5079)
                     /locus_tag="RJ272_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7382461.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(5209..5625)
                     /locus_tag="RJ272_001403"
     CDS             complement(5209..5625)
                     /locus_tag="RJ272_001403"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382462.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEINSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            complement(5638..6270)
                     /locus_tag="RJ272_001404"
     CDS             complement(5638..6270)
                     /locus_tag="RJ272_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HDV7382463.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            complement(6279..6449)
                     /locus_tag="RJ272_001405"
     CDS             complement(6279..6449)
                     /locus_tag="RJ272_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HDV7382464.1"
                     /translation="MLPAIIGLSRKHSNWLIISLLNLFFGWTIIVWLVCLIWSFTGSF
                     KQTIIIKEKNEK"
BASE COUNT         2296 a         1154 c          752 g         2266 t
ORIGIN      
        1 atgggggcta tattttagag cactcgtaat ttttattttt tatattaaca aattgacttt
       61 taagtgtttt aaaatctgga atataagcat aaccgctaag cgtatctata acgatacaaa
      121 gagcatgctt ttttgataac aaacgtataa tgcaatctga attattcttt gctaaagttt
      181 tttcatatgc ataattggca ttttttaacg gagaatacac tctgcccatt tcatcaaata
      241 ctaatctagt aaatcctgaa caagatcctt tgaattcaac cttttctatt ccgaatcttt
      301 ttgtaagatt aaatctttgt gtagtttttt catcatcttt actaataact ccactttgac
      361 ctgaattcat taatttgtta tgattgatta catcaacagc aatttctcta tctatattga
      421 tttcagtttt acctaaatta gcatttccat cgccattttt atccaagaaa atagtatatg
      481 tttgatcata acctgtggca gctgatttta taaaataaat ctgccattta cttttaaacc
      541 actctctttt tgcgatagcc aactcatcaa ctcttatgcc ttcttgcatc atggctaaac
      601 tttgggtata ttggatatca ttaagaattt gtattgcacc ttctagtaga ttgtcttttt
      661 ttaagtaaag actgcctaaa ttaaaaacta tacctaaaat gagaattata aacacaaatt
      721 ccaacaaact gaaagcttta atcatagttt aaaatctgat atactttttc atattttcca
      781 agttttactt taacaatttt tttgtccata tcatgcttat cgccttgttt taaagctttt
      841 aaataaaact tattgctatt ttttattcca taaaatcgca atcttttttg caaacttggg
      901 gctgttgcaa gttctaaaac atcttgtttt tttaattcta gtgccaattc tttagcaaaa
      961 tgataattat tggcaaaatg acgatttgga ttgtttataa aataatacaa taattgatta
     1021 gcgacgatta aaaagtaaca aaatatcaaa aaaattatag aacattctat aaagatttta
     1081 taccttaatc gaaaaactgg taatctcacc ctataacttt gcattaaagt ttttataagc
     1141 aaaggagtgc aaataacaca aaaaggcaaa aaatcatcta aaaaaagttt ttgtcttaaa
     1201 gaaagcaaca aacaaaatac aaatgttacg ctcattaaaa accataataa atttttatat
     1261 ttttgaaaag tcaaacgata aatagtataa aaaaaataca caaaaaccaa aggagaaaaa
     1321 catgcagcaa aaattcctaa ggtatctaaa aaataacctc ttggacgacc acctgtatca
     1381 aaaccataaa aactgatact cgctccaaac aaaacaagag ataaggtaaa taaaatagca
     1441 tttcttttat aaatcccaaa aaagaaaaaa gttaaaaata aaatattaaa agatttatca
     1501 acaaataata ctataatcaa taatatataa aaaagccatt ttttttcata ttcgtaagca
     1561 cataatatag caagggttaa aaaaatcacc aaagatgcgg cattaaccag taaagcactt
     1621 gcaacagtac ccggcaataa aacaaataac aataaagaaa aaaaagcatc aattttagtt
     1681 ttagtatatt ttaaagctag caaatacaaa agcaaacaac ttaaaaaatg aaaaaataaa
     1741 aaaggaagcc ttaaaccaaa atcattttgc ccaaaaataa aagttccaaa atgagatata
     1801 taataaagca aactatggga aaaaataagt gatttaccct gctcaccaaa ataaatatca
     1861 gcttcatcag cactaatact cagtgttgaa attccataaa gcaaagccaa caaatcaaga
     1921 ctaagtaaaa tgatgataag tttataattt ttgatttttt ccataatgaa aattttacaa
     1981 aattaaactt aaaatatcaa tgcaaatcat ataaatatca aatatcttaa aaattaacat
     2041 caaattgatt ttagttttta taagtataat tttaaacaaa aaaggcaaaa atgcaaacta
     2101 ttgatcaaat ttttcaaaca caaatcgata ttaaaaaatc tattttctta tcttttcttt
     2161 gcccttttaa agattttaaa tttttaatag aaacgctaaa aaaagaacat ccaaaagctg
     2221 ttcattttgt ctatgcttat cgtgttttaa atgattttaa tcaaattgta gaagataaaa
     2281 gcgatgatgg agagcctaaa ggaacttctg gaatgccaac tttaaatgtt ctaaggggct
     2341 atgatcttat caatgcggct ttaatcactg taagatattt tggtggtata aaacttggta
     2401 cagggggact tgtaagagcc tatagcgatg cggcaaatgc cgtgatcaat aattcttctt
     2461 tactttcatt tgaattgaaa aaaaatataa ccattgctat tgatttaaaa aatttaaatc
     2521 gttttgaaca ttttttaaaa acttattctt ttaatttcac aaaagatttt aaggattgca
     2581 aagctatatt acatatcaaa ttaaatgaaa aagaggagca agaatttgaa attttttgta
     2641 aaaattttgc accttttgaa atagagaaat tataaattct tgcaagtaaa tacaaaagct
     2701 ccaaaatgga gcttttgatt aaattgcgtt caataaatca tttaacaaag tattattctt
     2761 actttgttca tttgcacctt gttgcgcaag atcattgtga acgctagcac tttgagctct
     2821 catagacaac tcgccttcat tttgtctaaa acgataagcg taaacatttg acatttgagc
     2881 ataattactt aaatttgaat ttgagttttg cgcattactt tgaaaactgc tgctagaatt
     2941 taaagcatct ccgcttgact tctcatccgc cttatttaac atatccataa aatcagaatc
     3001 tccagatgaa gaataatctt caatctgttt atccacctgt ttatactgac cactaatagc
     3061 atcgtattca tacgagctaa tcgttctata atttacctgc atagttttct cctttcaaaa
     3121 tatgcaaaaa ctatacaagc aaaaagcgtt cctttttatg taaaaatcaa tgttttttaa
     3181 tcatggtgag taggcaaatg ctccacatca agctcattat tggctataaa ttcttccttg
     3241 gcttttttac agttttcatc acgcattttg cggtattcat tacgaatggt gatttcttta
     3301 tcgcttagag gtctatcttc taaaaaactg atatgaaaat aagtatcatc gctctttgaa
     3361 taagttttat aaaaatctat atagtcaaaa taatccttgc cattatcaaa ctctacgact
     3421 tcttctatat aaatcgtagg cccaaaaccc ttgtgatttt gtgtataatg cccaaaacct
     3481 gcgctgtatt gaattctaaa tttagccatc attttctcct aaaaattctt gataagttcc
     3541 acgaaaatct gtaagcttac cattttctaa atgccaaatt ctattagcaa aagcagaaac
     3601 taactcccta tcgtggctga tacaaagcac tacacctttg aaattataca aagcttcacc
     3661 taatgcaata atactttcaa gatctaaatg gttatcaggt tcgtctaaaa gcaagaaatt
     3721 cggacgctct agcattaaac gagaaagcat taaacgatgt ttttcacccc cacttaaact
     3781 tgctgccatt ttttcttgat cgctgccact aaaaagcatt ctacctaaac acttgcggat
     3841 ttcatctaga tctttaaatt tttcactcat cagccattca taaagtttca aattttcaca
     3901 aattaaatta cttgtatctt gaggaaaata tccaagttct atagttgccc caagatgtat
     3961 agatccacta tctggactta tagcatgggc gatgattttt gctaaagtac ttttacccac
     4021 accatttgcc ccaatcaaag cgattttatc atttttttct atttttagct ccaaatttga
     4081 aaacaattgt ttatcataag ccttacctat acctttaatt tctaaaactt cattacctat
     4141 ttcacgattg gttctaaata ctatactagg atctctacgg cttgaaattt taatctcttc
     4201 aagctctagt ttttcaagcg ccttagcacg gcttgtggct tgttttgcct tagaagcatt
     4261 tgcactaaaa cggcgaatga aattttctaa ttcttctctt tcttttaagg ttttatcgcg
     4321 tttaagctca gcttgttttg ccaaaagcgt tgaagccata taccaatcat cataatttcc
     4381 cgcaaaatca cgaatttgtt taaaatccac atctaaaatt cttgtgcaaa ttttatttaa
     4441 aaaatgccta tcatgagaga tgacaaccaa agttccttca tgtcttaaaa gttcattttc
     4501 aagccaagaa atcgcctcta aatcaaggtt atttgtaggc tcatctaaaa aaagcgcatc
     4561 ggcacctaaa aacaaaactt gagctaacaa aactttaaat ttatccgcac tttgtaaggt
     4621 gctcattaaa gcatcgaaat ctttaatctt taaagaactt aaaatttttt cacaacgtgt
     4681 ttcacaatca taatttggat cttcttcagc cgttattatc tcaagctcac ctaaacgctc
     4741 attgatctca tcagtaaatt cctcgctcat ataaagcttt tctttttctt ttaaggcctc
     4801 atataaacgc ttatttgcac acatcactgc atctttgatg gtgtagtttt caaaagcaaa
     4861 ttgatcctgt cctaaaactg cgattttcaa gccttcatca aatactattt caccactact
     4921 tgactcaatt tctcctgaaa gaatttttaa aaaagtcgat tttcccgcac cattagcacc
     4981 gataagtccg tatctttgtc ctcgaacaag ttttaaatta acattttcaa ataaaagctg
     5041 atttgcaaaa cgcatagtaa gattttttac ttcaaccatg attttcctta aattttttac
     5101 ttataaaaat ttttaagaaa ttgtatcaaa aaaagacttg aaattaatta agtataaaat
     5161 attagtaagt catgaaatta attctattga cttactttaa taaaaatatt attggaaatc
     5221 tccattgata taagttatat ctgtaatttt cacttgattt atgttagaaa ccttataaac
     5281 aacactccaa agaccttttc tctgttcccc ttttaatgca gcattaatcg tagccataca
     5341 agaatcaaaa ttaagatcaa aatttgaaat ggaattaatt tcgatcatat cagtgtaatt
     5401 taccattcca tcatgcttgg ctatttcttt gaggcctttt gcataatctt cataatcaat
     5461 cccttgggct ttaagtccgg ataattcata aagattttta aaaatttcac taggaatttt
     5521 ttctttaaga tttgaaacaa ctgccgtatt atcacatttg tctaatgagt tggcctgaag
     5581 caaggcaaac cccattaaga aaaataaaat tactttttta aacatatcta aactcctcta
     5641 atttttaggt tttgctacta aaataccatt tttatattct tcttctctta caatctcccc
     5701 ttttttatat tctctaaaga ctccattttt aagtccgttt ttataatttt cttcgtcttc
     5761 taaggcgcca ttttcatcat aacgcttttg tactccatca aatttacctt tattatcaaa
     5821 attataatca cacattaaag ttccattttc ataatattcc ttgtaattac cttcaaattc
     5881 tggcatacca tcttcattat agccaagtag ttttcccttt gctctcatat ttccattctc
     5941 ataatagctt gcaaaatcac catatccgcg attatcttta aaatgcacct cctcaagtaa
     6001 ttgcccattt ctagaatatt ccctgctaat tccatctttt tttccatttt tataattttc
     6061 ttcagctctt agctgaccat tgtcataaaa agctcttttt aacccatgta ttcttgaatc
     6121 tttattatag ggaatttctt cttttaaatt tccatttgga tatttgtttt gctgaactct
     6181 agccacatcg ctaggttgtc caggaaaatc acttccacaa ccacttaaca acatcgcaat
     6241 taaactacaa atgcttaaaa attttgtcat tttttctcct atttctcatt tttttcttta
     6301 ataataatag tttgcttaaa acttcccgta aaagaccata ttaaacaaac aagccaaaca
     6361 ataatagtcc aaccaaaaaa caaatttagc aaagaaatta tcagccaatt agaatgcttt
     6421 ctgctcaaac caataatagc gggcaacatg tataatacaa acaataat
//
LOCUS       DAPIWV010000095         6419 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.096, whole genome shotgun sequence.
ACCESSION   DAPIWV010000095 DAPIWV010000000
VERSION     DAPIWV010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6419
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.096"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            68..538
                     /locus_tag="RJ272_001406"
     CDS             68..538
                     /locus_tag="RJ272_001406"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDV7382465.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGVTININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEKKGYI"
     gene            540..1742
                     /locus_tag="RJ272_001407"
     CDS             540..1742
                     /locus_tag="RJ272_001407"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDV7382466.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVAKRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            1743..2279
                     /locus_tag="RJ272_001408"
     CDS             1743..2279
                     /locus_tag="RJ272_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HDV7382467.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            2285..2884
                     /locus_tag="RJ272_001409"
     CDS             2285..2884
                     /locus_tag="RJ272_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDV7382468.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            2886..4028
                     /gene="folP"
                     /locus_tag="RJ272_001410"
     CDS             2886..4028
                     /gene="folP"
                     /locus_tag="RJ272_001410"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDV7382469.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKQKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            4029..5972
                     /gene="ligA"
                     /locus_tag="RJ272_001411"
     CDS             4029..5972
                     /gene="ligA"
                     /locus_tag="RJ272_001411"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDV7382470.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            5953..>6419
                     /locus_tag="RJ272_001412"
     CDS             5953..>6419
                     /locus_tag="RJ272_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382471.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFIDNAYNDFRIVVIASFFTALFYAFYGLFFT"
BASE COUNT         2282 a          724 c         1261 g         2152 t
ORIGIN      
        1 gtattttaat aaaaatttga tttgatttag gttaaaatta tatccttgag atttaaggaa
       61 caatattgtg gaaaacgaga aaaattatag accaaatgtt gcagctattg ttttatcaag
      121 ttcttatcct tttgagtgta agatttttat agctagaaga agtgatatgg ataatatttg
      181 gcaatttcca caaggaggta ttgataaagg tgaaagtgtc aaaaacgctt tatttagaga
      241 actaaaagaa gaaataggca ctgatgaggt tgaaatcatt gccgagtatc cagaatggtt
      301 gagttatgat tttccgagta aaattgttaa aaaaatgtat ccttatgatg ggcagattca
      361 aaaatatttt ttagtgcgtt taaaacacgg tgttacaatc aatattaata ccaagcatcc
      421 cgaatttgat gattatcaat ttgtgagtgt taaacaaatt tttgaaatga ttaatcattt
      481 caaaaaaaat atttatgtta aagtgatcaa atattttgaa aagaaaggtt atatctaaaa
      541 tgcttatagt tcaaaaatat ggtggaacaa gcgttggaac acttgagcgt atcgaagcag
      601 tagccaaaag ggttatccaa agtgcgcaac agggtaatca acttgttgtt gtagtatctg
      661 caatgagtgg ggtgacaaat actcttattg agcaagctga atattttagt aaaactccta
      721 atggtaaaga tatggatatg cttttaagca gcggagagcg tgtaacaagc gctttacttt
      781 ctatcgcctt aaatgaaaag ggttgtcctg ctatatcatt ttctgggaga aaagcaggaa
      841 ttattacaga tagtgttttt acaaaggcaa gaattcatca tattgataca aaagcgataa
      901 aatcagaact tcaaaatggt aaaatagtcg ttatagcagg ttttcaaggt gtagatgagg
      961 aaggtaatgt aactacctta gggcgtggtg gaagcgattt aagtgctgtg gcggtagcag
     1021 gtgctttaaa tgcggatttg tgtgaaattt atactgatgt tgatggggtt tatacaacag
     1081 atccaagaat tgaaccaaag gcaaagaaat tggataaaat ttcttatgaa gaaatgcttg
     1141 aacttgcaag tttaggtgca aaagttttgc aaaatcgctc tgtagagctt gcaaaaaaat
     1201 taaatgttaa tttagtaact agaagtagtt ttaacaataa cgaaggaaca atgataacaa
     1261 aggaagatgg aatggaacaa gctttagtaa gtggtattgc tttggataaa aatcaagcaa
     1321 gagtgacttt aagaaatata gaagataagc ctggaatcgc agctgaaatt ttttctgttt
     1381 tagcaaatga aaatattaat gtagatatga ttatacaaaa tgttggagtt gatggtgcta
     1441 caaatttggg ttttacggtt cctcaaaatg aacttgaatt agccaaaaat gctatgcaaa
     1501 aaattttaag ctcaaaaaca actatagaaa gtgatagtgc tgtagtaaaa gtttctatag
     1561 tcggcgtagg tatgaaatca cattcaggag tggcaagtaa agcttttaaa gctttagctg
     1621 atgaggggat taatatcggt atgatttcta ctagtgaaat aaaaatttca atgatagttc
     1681 atgaaaaata cggagaactt gcagttagag cactacatga gtgctacgga cttgataaat
     1741 aaatgagtga ttttttaagt tttactcttg aaaatattcg caatggcgga gcttttatgg
     1801 catggttgga gtcgcgtcgt ttagaatggg ctcctttgat ggctgcaaga cttaaatatc
     1861 ttttagaagg acgcactttt gtattaatgt gtgatgaaca aagatcttgg tatgaagagt
     1921 attttttaaa aaatataaat tcaaaagcca ctcgtcccat gctccctttt gtgtcgttaa
     1981 attctttatg taagaagaaa gtacaaagtt cagaagatat agctttactt aatgacttgc
     2041 ttgacatttc ttttcctaat ggttatgtat atttttatat aggaagtgct tctgataata
     2101 aatctttaat cgctaaatca agagatgata gtttattgtg gctttttgat gagcagttac
     2161 aagatagttt ttatttaaat tctaaagata aagacttgga tatcaagctt attagtttat
     2221 atcaactttt tgatgtaagt ttggatgcaa tattattttc caaggtgcaa ttaggataaa
     2281 tattttgttt attagtaaga ttattatcag tgaagatttt ttaggtatta aggaagaaat
     2341 gattaataat tttggtatta aaaaattaag attttttata ccacaaaatg aatttttact
     2401 tgatgatgca agagcggttg aaaaagaaag ctatatcgca gaaactgaag aaaaaattat
     2461 tgttttaatg gcggattctt ataggataga agcacaaaat tttttactta aactccttga
     2521 agaacctcca aaaaatatta aatttcttat tgtgatacct tctaaaaatt tacttttacc
     2581 tactataaaa tcacgtctta tttgtgaaaa aagaaaagtt gaaaaggaag ttaaaaaact
     2641 tgatttagat cttaaaagaa tggatttaag aatgcttttt gattttttgc aaaaaaatga
     2701 aaatttggat aaaaatgaac ttatggatca aatcgcattg cttgctaaag aatgtgtgaa
     2761 atataaagat tttaacgctg aagaattaga gtttttttat gaaagttatg agcttgcaaa
     2821 attaaattct aaaagcgggg tgcttttagc tactctttta ttaaattact atacaaagaa
     2881 ataaaatgaa attttttaaa atcaatccaa acaccgattt taatttgctt tgttctttca
     2941 taaaccctca taaaatggga caaaagatca tgagtgaaaa aacaaaaatt cattttattt
     3001 ttatcaaaga tatttctact cctgcggcaa atattttaaa acaagatgct ttaagagtag
     3061 gagctgaact tattactcat aaagaagtaa ttactgcaaa aatcactcat tcaaatgcgc
     3121 ttttaatggc aagtaaagag caaattcaaa agcttgttgt caaagaaaaa cttcaagatt
     3181 ttggacttaa aaatttggct ctttttttgc aaaaagattt tttaaaacag aaaaaagccg
     3241 agcttatggc agtgattaat gtcaatgaag acagttttaa tgcaaaaagt cgtgtgagtg
     3301 aagaagactt tgaaaaaagg cttaatgact ttcttgcttt aaagcctgaa tatatcgata
     3361 taggtgcggt aagttcaaga cctgggagtg agtattgtgg caaggaagag gaatttaaaa
     3421 gactgaaaaa agtacttgac ttaatttatg agaaaaatta ttacgaacaa gcaattttta
     3481 gtttagatag ttttgatgaa tattgtctag aatatgcttt aaataagggt tttaaactca
     3541 ttaatgatat tacaagttta agaaatctta atctagccaa acttgcaagt aaatatgggg
     3601 caaaatattg cttaatgcac atgcaaaaca atccaaataa catgcaagat aatccttttt
     3661 atgaagattt gcttgatgag atgactttgt tttttaaaga aaaacttgag cttttagaaa
     3721 gttttggagt aaaagaaagt attttagatg taggtattgg ttttggaaag agtgcggggc
     3781 ataatatgat tttaatcaaa cacttagaac attttttgca atttaataaa cctttactta
     3841 taggtgcgag tcgtaaaagt gtgattaatg cgtattttca aagcgagatt aaagatcgtt
     3901 tagcgggaac tttatatttg catttaaagg cttttgaaaa tggtgctagt attataagag
     3961 tgcatgattt atatgagcat aaacaacttt ttgctttagc gcaggcaatg gataatatag
     4021 gagtttagat gaaaaaagaa gagtatttag aaaaagttgc tttagctaat ttgtggatga
     4081 gggcatatta tgaaaaagat gaacccttgg ctagcgatga agaatacgat gctttaatca
     4141 gagaattaag agtttttgaa gaacaaaata aagatgaaat ttcaaaagac tctccaacgc
     4201 aaaaaatagc tcctactata caaagcgagt ttaaaaaaat agctcattta aagcgtatgt
     4261 ggtcgatgga agatgtgttt gatgagagtg agcttagagc ttgggcaaaa cgcgcaaaat
     4321 gtgaaaaaaa cttttttata gagcctaaat ttgatggagc gagtttaaat ttgctttatg
     4381 aaaatggtaa attagtaagc ggcgccacta ggggcgatgg cgaagtgggt gaggatataa
     4441 cgcttaatgt ttttgagata gaaaatatac ctaaaaatat agcctataaa gaaaggatag
     4501 aaattcgtgg agaagtggtg attttaaaag atgattttga gaaaatcaac gaaaaaagag
     4561 cccttttaaa tcaaagttta tttgccaatc cacgcaatgc tgcaagtggg agtttaaggc
     4621 agcttgatac aagcatcact aaagaaagaa atttgaaatt ttatccttgg ggagtagggg
     4681 aaaatacctt aaatttcacc aaacacagcg aggtgatgca atttatcaga gagcttggtt
     4741 ttttaaagga tgattttgta agactttgcg ctaatttaga cgaagtttta aaagcttatg
     4801 atgagctttt agttctaaga gaaaaaaaac ctatgatgat ggatggaatg gtggtaagag
     4861 ttgatgatct tgcactttgt gaagaattag gctatacggt aaaatttcca aaatttatgg
     4921 cagcttttaa atttcctgcg cttgaaaaaa ccacgcgttt aataggggta aatttacaag
     4981 taggaagaag tggagtgatc actcctgtgg cggttttaga acctgtaaat ttagatgggg
     5041 ttgtagtaaa atcagccacc cttcataatt ttgatgaaat tgcaagactt gatgttaaaa
     5101 tcaatgattt tgtaagcgtg ataagaagtg gcgatgttat ccctaaaatc actaaggttt
     5161 ttaaagagcg tagagaaggt ttagagatgg aaatttcacg ccctaagctt tgtcctactt
     5221 gccaaagtga gcttttggat gaaggaactt taataaaatg tcaaaatata gattgtgaag
     5281 atagacttgt aaattctatc attcattttg tttctaaaaa atgtcttaat atcgacggac
     5341 tgggagaaaa tatagtagaa cttttataca agcacaaaaa aatcactacg cttgagagta
     5401 tttttcattt aaaatttaat gattttgaag gtttggaagg ctttaaagaa aagaaaatta
     5461 acaatctttt aaatgccata gaacaagcaa gagaatgtga gctttttcgt tttatcacag
     5521 ctttaggaat agagcatatt ggcgaggttg cggctaaaaa attaagttta agttttggta
     5581 aagagtggta caagcaaagc tttgaagctt atgccaattt agaaggtttt ggagagcaaa
     5641 tggctttaag tctttgcgaa tttacgcgtg ttaatcgcac aagaattgat gagttttaca
     5701 agcttttaaa tttgaaaata gaaaaacttg aaatcaaaag cgatggtgtg atttttggta
     5761 aaacttttgt gattacaggc actctttcac gcccaagaga tgagtttaag gctttgatag
     5821 aaaagcttgg gggtaaggta agcggctctg tttctaaaaa gactgactat gtgctttttg
     5881 gagaagaggc aggttctaaa cttagcaagg ctaaagagct tgaagtaaaa tgtataaatg
     5941 aaagtgcttt taatgagctt gttaaagaat agttcttata ttttaacgct tttaagcctt
     6001 tttggctttt tgctaacttg gcaaaggagt gctttttctt tatttttttt aattcctatt
     6061 tttttaacac ttttttggga attcttttta tttttaaagc ttagaaaaaa tattataaaa
     6121 gaagctactt tgattaaggg aagtttgttt tatcgtatta gtatggggga tttttatctt
     6181 tatattttta gctttttttt ggcgattttt ggacttgttt ctttattttt aaatttttta
     6241 aatcttgaaa aaattgattt tgtttttata tttataattt tacctttatt gatgatattt
     6301 ttaaaaaaag aattgcattt gcaatttata gataatgctt ataatgattt tagaatagtt
     6361 gttatcgcta gtttttttac tgctttattt tatgcatttt atgggctttt ttttactta
//
LOCUS       DAPIWV010000096         6365 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.097, whole genome shotgun sequence.
ACCESSION   DAPIWV010000096 DAPIWV010000000
VERSION     DAPIWV010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.097"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..759)
                     /locus_tag="RJ272_001413"
     CDS             complement(<1..759)
                     /locus_tag="RJ272_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDV7382472.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPITSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRSVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFLQDF"
     gene            complement(839..2107)
                     /locus_tag="RJ272_001414"
     CDS             complement(839..2107)
                     /locus_tag="RJ272_001414"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDV7382473.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(2222..3397)
                     /locus_tag="RJ272_001415"
     CDS             complement(2222..3397)
                     /locus_tag="RJ272_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7382474.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAVIVMSMIKFLSNSKK"
     gene            complement(3378..4214)
                     /locus_tag="RJ272_001416"
     CDS             complement(3378..4214)
                     /locus_tag="RJ272_001416"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HDV7382475.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     TVIMVAGGREVVLQERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(4216..6318)
                     /gene="topA"
                     /locus_tag="RJ272_001417"
     CDS             complement(4216..6318)
                     /gene="topA"
                     /locus_tag="RJ272_001417"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDV7382476.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEAYAISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
BASE COUNT         2058 a         1187 c          905 g         2215 t
ORIGIN      
        1 aaaatcttgt aaaaaattcc tagatgaaac acaaataaaa ggactggatt tataatttaa
       61 agggctatat aaaatgtatt ttttagaaaa atctcccata aatcctccat tttgattaat
      121 caaaaaatct cctgctacaa tatcccaaat attaagcttt tcaaatcttt tataaactcc
      181 tgccctagcc tctaaaatag cacaaaattt caatccagag cctatattaa tagcttctaa
      241 ttgatgctct tttgcaaagt cttcatcttc tttgctaaga tgattaacac tcaataaggc
      301 tttatattta tttttctcgt attcttgctg gtcaatttgc aaaggtttat cgtttttata
      361 aaccttggtt tttgcatgag catagaatat atcacctttt gatggatttt gtatgagtga
      421 taaaacagag cgattgtcat gaaccaaact tatcataacg caaaattcat cactgccttt
      481 taaaaaacca cttgttccat caagaggatc gataagccaa aaagttttta attcttcaca
      541 ctcttctttg ctgagtaatt tttcttctga tagaatttta atatccgtag aacccaaaat
      601 atcatttaga attttattag aagcaagatc tgctgatgta atcgggcttt tatcttcttt
      661 ttcccaagtt ttgaaatttt ttctctcttc taaaatagct ttagaagctt gattgctagc
      721 atttatagca atttctaaaa atttatcaag attaagcatg attataaact ttctataaga
      781 ttttttaaaa ttatacaaga agattttgtg gaatttttaa tttccacaaa aattttaatt
      841 atattttact agtttcaccc aaataaagtt gtcttggacg gactatttta agactttctt
      901 gctctttttg ctctatccac tgagctatcc atcctggggt gcgtcctata acaaataaag
      961 tagcaaacat ttcatttgga atacctaagg cttttaaaat aagtccacta tgaaaatcaa
     1021 cattcggata tagccctctt tgaacaaaat aatcatcact taaagcaatc tcttctatac
     1081 gcgttgctac tttaataaga ttggtatcaa tacccaactc atcaataagt tgatcacgaa
     1141 gttttttaag tacttttgct ctaggatcaa aatttttata aaccctatgc ccaaagccca
     1201 tcaagcggaa aggatcgttt ttatccttag ctcttttgat gaattcatct accctatcaa
     1261 cactacctat ttgctcaagc attctaataa caccttcatt agctccacca tgtgcatgac
     1321 cccaaagcgc accaatacct gctgctatac aggcataagg atgagcgtga gttgaaccca
     1381 cagcacgaac tgttgaagtt gaagcatttt gctcatgatc tgcatgaagc ataaaaactg
     1441 tatcaagtgc ttttacttct ataggtttaa gctctacatg atcgtaagga taggttctta
     1501 acatatataa gaaattttct gtaaaaccac gatctaaatt tggataagcc ataggaaagc
     1561 cgtgtttata tctataagca gtagccacta tagtagggat tttagctact attctagctg
     1621 ccatttccat atattcttct tttacattca tgtttaaatg atcaggataa aaagcactaa
     1681 gcgatgaaac agcaccttgt aaaactgcca taggatgagc attatcaggg aaagaatcaa
     1741 aaagacgatg cataccttca tggataaaag aacgcttttt catttcataa cgaaatgctt
     1801 caagacgcgt agcatcaggc aattctttat aaagcaaaag atgaaccaca tctaaataaa
     1861 gtttgttttc agcaagccac tctataggat agccacggtg cattaaaatt ccgttttctc
     1921 catcaatata agtgattttt gatttacaag tagctgtaga agtcaagccc tcatcataag
     1981 aaaacattcc tgtttgttta taaaaacttg acatatctac aacgcttggc ccagttgtac
     2041 cgtcatatat aggaaattca tagctttttc catttctatt atcggttata gtaacggaat
     2101 ttgacatttt cgctcctttt attgttactt ttattaattc taacaaaaaa ggacgattat
     2161 gagttttttt attattaaat ttttaagatt ttatttgctt ttttgagtaa aaaagtaact
     2221 ttcatttttt agaattagaa agaaatttaa tcatactcat aacaataaca gcctcaaata
     2281 acgctgttaa aataagtgct gaataaagct tctcatcaat aaccttgccc gaataaccca
     2341 gagtagctgt tgctataagc aaggttaaag gcatagaatg actaagacca aataaaatca
     2401 tatttttaaa accaattctt tttaaaaaaa cacttgcaca taaaattctt aaacccacca
     2461 taacaaacat aagtaaaaat gcttgtaaaa cgattttata atctaaaatc attttaagat
     2521 caaaggttga acctatatgg ataaaaaaaa tagggatcaa aaacccgtgt ccaaaagtag
     2581 aaagcttgtg ctcaagatct tttttatgat caaaaaaagt agctataaat gaacctgcta
     2641 taaaagaacc aagaacgatt tcaagttttg taataaccat agcaacaatg atcagtataa
     2701 aaatggccat acaaaatctt atatcttttt catttttatc ttcccatggc ataagcacaa
     2761 ctttaagctg aggataccac caaaaaagca caccaagcat tttaaatccg agcaaacaaa
     2821 gtcccaaaaa gatattaaga tataaaatac tttgcgctac atcaataata cctgttcctt
     2881 cgcgcaaaaa agctcccgct atagtcaaaa gcacaataga aatcacctca gctaaagtag
     2941 ccactatcat agcaatattt agccaataac actcttttcc aaaatcctta aaaagcaaag
     3001 ataaaagccc tacactcatc acaggtataa tgataacaaa tactaaagaa agtccaaaaa
     3061 tccatactat aagagaagat aaagcgtaaa gtaaaaaaat ataaaaaaaa ctttttttgg
     3121 cgacttcttt atccatatta aaaaaggctc ttaaatttac ctccataccc gctataaaca
     3181 ttagataata aaaacctaca ttggctaaaa gtgcaaaatt ttcacttttt cctatgaaac
     3241 caaaatatgc tattattgcc cctaaaataa tttcagtagc tgaaagaggc aagcgtaaaa
     3301 tttttgcaat atgcggagaa aaaagtaagc ataaagctat aacaataaga atttttagat
     3361 caattaaacc ttgtggatca atgacactct gatgcaaaag taaatcccat ttcttttaat
     3421 tttattatat cttgacttgg ttcttcacct ttagtggtta aataatcccc tataacaata
     3481 gccccagcac ctgcttgaaa aatttcatac tgcctttctt gcaataccac ttcacgtcca
     3541 cctgcaacca tgattacagt ttgaggcaaa gcctctttgg tgtcacgcac gatttttaaa
     3601 gcttcatcag cactaagtct tggaacttgt agttttaaat tttcatttgc tataaaaaaa
     3661 ttaataggcg ttgaaaaagg ttgtaattct tgcaaagatt ttctaaaact tagcctatct
     3721 tcttcgctct cacccatacc ataaattcca ccacaacaaa gcataagccc tgcttcttta
     3781 gcgtttaaat tggtttgaaa tctactttcc caagtatgtg tggtgcaaat ttgtggaaaa
     3841 aattccttag aactttcaag attgtgatta taagaaaaaa ttcctgcttt tttaagttct
     3901 ttgagttgtt ccacgcttgc cataccatta caggcaatta aaagcaaatt aggtacttct
     3961 ttttgcacag ccttggcagc ttcgcaaaca tactcaagct tttcatcatc aagcccaagt
     4021 cctgccgtaa ccaaacaaaa acccaaggct tcatttttct ttgccatttt tgcttctaaa
     4081 acgatttgtg aaagttcttt acgacgatat ttttgaatat ctgtttttac atgagcgctt
     4141 tgggtgcagt atttacagtc ttctgaacaa tttccactgg ctatatttga aatagcacaa
     4201 agcatgattt gcattctaat ccttcatttc ttttttgatt ttacacttta aacattctaa
     4261 gaatgtacct tttttaagct cttttatcac taaagtttcg ccacactctt cgcatttttc
     4321 ttcacttggt ttgtatttgc ttataaaatt gcattttgga taagcactac agccataaaa
     4381 tttaccacgt tttgaaaagc gttctacgat ttcacctttt tgacaacttg gacaagtaat
     4441 gcctgtacca ttagctttag cttttgcggc tgtattttcg ctttcgtttt tgctttcact
     4501 ttttaaattt cttgaatact tgcattttgg gaaatttaaa cacgctacaa attctccaaa
     4561 acgccctttt ctaatagcaa gctctccgcc acaatcagga caactttcgc ctagttttgt
     4621 gacagttttt tgactagcta tttttgtttt tccttcttcg atttttctca taaaaggata
     4681 gtaaaattct tttaaagttt cttgccaatc tgccttatct tctgcgattt catctagggt
     4741 attttcaagg tttgaagtaa atttactatc tactatatcg ctaaaatttt tctcaagcac
     4801 ttcggttaca ttaaaagcaa catcgctagg aatgagttgt tttttatcta ttgttacata
     4861 atcacggctt gtaagtatag aaatggttgg cgcataggta gaagggcgac ctatgcctaa
     4921 actttcaagt ttttttacaa gtcctgcttc tgaatacctt gaaggtggtt cggtaaaatg
     4981 tgagttcatt tctaaatttt gcacttttaa attttggcct attttaaaat ttggcaaaat
     5041 tttatcctta tccatatcac cataaacttt ataatatcca tcaaaaagga tttttctacc
     5101 gcttatttta aaaactgctc tatcattttt tacaaataca ttttgagttt gagagatagc
     5161 aggactcatc tgacaggcta aaaagcgatt gtaaataagt gtgtaaagtt ttaactcatc
     5221 tttgtctaaa aatttagccg caatttctgg agtaaaactt aaatttgtag ggcgtatagc
     5281 ttcatgagct tcttgagcgc ctttagtctt tgtagtatat acatttgctt tgcttggaag
     5341 atagtccttg ccaaaatttg cttgtatgaa ttttcttgca ttttctactg cttctttggc
     5401 taaatttaaa ctatcggttc tcatataagt aataaccccc atcacgcctt catgggtatt
     5461 tactccttca tagagctttt gagctatcat catggttttt ttagggttaa aaccaaggcg
     5521 attgctggca ctttgctgca aggttgaagt cataaaagga ggaggcggag cgatttttct
     5581 ttctttgctt tcaatgtcgc ttatagcata agcttcattt ttacaagcct ctagtataag
     5641 cttagcacga tctttgttgg taatggtaag tttttctatc ttagctttgt caaactcaac
     5701 cagttctgca tctaaatctt tttgaaaaat catatcaata ctaaagtatt ctaggggtac
     5761 aaaggcacga atttcttttt cacgatcgac tatgatcttt aaagccgcac tttgaacacg
     5821 cccagcacta agtcctcttt gaattttttg tcctaataaa gggctgagct tataccctac
     5881 aatgcgatct aaaagacgtc tggtttgctg agcatttaca gagtgcatgt ttaattttct
     5941 tggatttttt aaagcatttt ctatagcgct tttagtgatt tcatgaaaaa caatgcgtgg
     6001 taaggtgttt tcatcttttc ctatagcttt tgcaatatga taggctatag cctctccttc
     6061 tctatcttca tccgttgcaa gatagacttc tttggcatct ttggctttgc ttttaagttc
     6121 tttaactaag gcgctatgat cacttgtgat tctatactca gggataaatt catcatcttc
     6181 tattttaatc ccaaagcttg atttaggcaa atctctaata tgtcctttag aagcgataac
     6241 ttcataatct tttcccaaaa aatttcctat ggttttagct tttgcaggag attctactat
     6301 gattaaattt ttcttcattt tgcacccttg ttaaataaaa agctgaattt agctaaaaat
     6361 attta
//
LOCUS       DAPIWV010000097         6342 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.098, whole genome shotgun sequence.
ACCESSION   DAPIWV010000097 DAPIWV010000000
VERSION     DAPIWV010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6342
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.098"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..392
                     /locus_tag="RJ272_001418"
     CDS             <1..392
                     /locus_tag="RJ272_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382477.1"
                     /translation="IIDKIENHFNESAKIRIQNQLSYKLGQAMIVSSKSILGYIRMPF
                     VLSYIYDKYKQEQKIYQEKIKKDPSLKLPSLENYPDYKEALTFKNHLSYKLGQALIKA
                     NKTWYKGGYIKMLFEIRELKQKAKKGK"
     gene            392..949
                     /locus_tag="RJ272_001419"
     CDS             392..949
                     /locus_tag="RJ272_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HDV7382478.1"
                     /translation="MAIEFDIQESKILKGVFIITPNSFKDLRGEIWSVFSSKDIESLL
                     PSNLKFVLDKFTLSKHNVLRGIHGDHKSWKLVTCVYGEVHQVVVDCRKDSPTYLKWER
                     FIINENNRKLILIPPYFGNAQYVSSKNDALYYYKWAYEGEYVDAKDQFTYAWNDSRIA
                     IDWSTDTPILSDRDIDATINDHIKG"
     gene            954..2048
                     /locus_tag="RJ272_001420"
     CDS             954..2048
                     /locus_tag="RJ272_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDV7382479.1"
                     /translation="MNKQSKIYVAGHTGLIGSTILKKLQQDGFCNIICKTHQELDLMN
                     QEAVKYFFEKEKPDCVFFCAAKVGGMLAQLNQRAEFLYNNLVMQSNVIHYSYLNGVKK
                     LIYLGSICIYPEEVQLPIKESSLLTGKLQYNNEPYAIAKIAGLKMCEFYSLQYGVDYI
                     SIMPVSIYGSNDNFDIQTAHVQAAIFRKIYLAKLLNECNYKELIDDLGVKTKEEAFMI
                     LKQNNINDKSVKLLGTGNSRREFLHCEDLAEASIYIMKNISFNEVVEREGWNQGNAHI
                     NIGTGEDISIKELAYMIKDILEYRGEVLFENKMENDGTARKVIDTNKIRALGWHYKIE
                     LRDGLVRMYHDYKKGVKQNEKIYTSFINLG"
     gene            2011..3177
                     /locus_tag="RJ272_001421"
     CDS             2011..3177
                     /locus_tag="RJ272_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HDV7382480.1"
                     /translation="MKKYTLASSTWDEKELQAIQDVIKSDMFTMGKKVAEFEKDFAKF
                     VGSKYAVMTSSGSTANLIATAALFYTKNPKLKRGDEVIVPAVSWSTTYYPLYQYGLKL
                     KFVDIDLETLNYDLEALSSAISDKTKMIMVVNLLGNPNDFDAINDLIKGKDIILLEDN
                     CESMGAEYKGNQAGTFGIMGTFSTFFSHHMATMEGGFVVTDDEELYHILLCLRAHGWT
                     RNLPKENLVANKSDDWFSESFRFVLPGYNVRPVEMSGAIGIEQLKKLPMFLKHRRENA
                     KLFCEYFQNHPEFIIQKEIGSSSWFGFSLVIRPNSKLQRKDIIKKLEENGIEYRPIAT
                     GDFTQNEVIKYFDYEIHNELKNAKYIHERGFFVGNHQFSISEQINLFKKVLDNL"
     gene            3174..4205
                     /locus_tag="RJ272_001422"
     CDS             3174..4205
                     /locus_tag="RJ272_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HDV7382481.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSIQKLFESKRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRLLKAKDGYDPVVHVCSSSEVYGRAKVGVKLNEDTTFHGASPYSI
                     SKIGTDYLGRFYGEAYGIKTYVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVV
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESEKGKVPCGEAFNIAGEEAFKLPEVIDILLG
                     FSTRKDIKVEEDEERLRPIDADYQMFDNTKIKSYINWKPEIPARKMFEDLLNHWRKEI
                     SMGRIPLNR"
     gene            4209..5228
                     /gene="hddA"
                     /locus_tag="RJ272_001423"
     CDS             4209..5228
                     /gene="hddA"
                     /locus_tag="RJ272_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HDV7382482.1"
                     /translation="MMIIRSQTPLRLGLAGGGTDINLYCDQYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFSEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELETRIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKTLSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            5216..5821
                     /gene="gmhA2"
                     /locus_tag="RJ272_001424"
     CDS             5216..5821
                     /gene="gmhA2"
                     /locus_tag="RJ272_001424"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDV7382483.1"
                     /translation="MENLNSYIKEHFQESILVKEQILKDENLITLIKNTSLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALSTDTSILTAISNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            5809..>6342
                     /locus_tag="RJ272_001425"
     CDS             5809..>6342
                     /locus_tag="RJ272_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDV7382484.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIQEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEVYVL
                     NGDTFFDIDLSKLKLNGSKICLALKQMNDFDRYGTVNVDGQGFVISFEEKIFKTQGLI
                     NGGIYLLTKDIFNEFDLE"
BASE COUNT         2362 a          753 c         1222 g         2005 t
ORIGIN      
        1 atattatcga taaaatcgaa aatcatttta atgaaagcgc taaaattcgc attcaaaatc
       61 agctctcata taaactaggt caagctatga tagttagctc taaatctata ttaggctata
      121 taagaatgcc ttttgtgtta tcatatatat atgataaata caaacaagag caaaaaattt
      181 atcaagaaaa aattaaaaaa gatccttctt taaaattacc ttctttagaa aactatcctg
      241 attataagga agctttaaca tttaaaaatc atctttctta taagctaggt caagctctta
      301 taaaggctaa taaaacttgg tataagggag ggtatattaa gatgttattt gaaattcggg
      361 aattaaaaca gaaagcaaaa aaagggaaat aatggcaata gaatttgata tacaagaatc
      421 aaaaatttta aaaggtgttt ttataataac gccaaatagt tttaaagatt taagagggga
      481 aatttggtct gttttttcta gcaaagatat agaaagttta ttaccttcaa atttaaaatt
      541 tgtgctagat aaatttacat tatctaagca taatgtatta agaggtatac atggggatca
      601 taagtcttgg aaattagtaa cttgtgtata tggtgaagtg catcaagtgg tagttgattg
      661 tagaaaagac tctcctactt atctaaagtg ggaaagattt atcattaatg aaaataatag
      721 aaaattgatt ttaataccac catattttgg aaacgctcaa tatgttagtt caaaaaatga
      781 tgctttatat tattataaat gggcttatga aggtgaatac gttgatgcta aagatcagtt
      841 cacgtatgca tggaatgata gtagaattgc tatagattgg tcaacagata cccctatatt
      901 atcagataga gatatcgatg caacaatcaa tgatcacata aaaggctaaa attatgaata
      961 agcaatctaa aatatatgtt gcaggtcaca cgggtttaat aggatctaca attttaaaaa
     1021 aattgcaaca agatggtttt tgtaatatta tttgcaaaac tcatcaagaa ttagatttaa
     1081 tgaatcaaga ggccgtaaaa tatttttttg aaaaagaaaa acctgattgt gtcttttttt
     1141 gcgcggcaaa agtaggagga atgcttgctc agttaaatca acgtgcggaa tttttatata
     1201 ataatcttgt tatgcaaagt aatgtgattc attattctta cttaaatgga gtgaaaaaac
     1261 ttatatactt agggagcatt tgtatttatc ccgaagaagt gcaattacct atcaaggaaa
     1321 gtagtttact tactgggaaa ttgcaatata ataatgagcc atatgctatt gctaaaatag
     1381 caggacttaa aatgtgtgaa ttttatagtt tgcagtacgg tgtggattat atttcaatta
     1441 tgcccgttag tatttatggc tctaatgata attttgatat acaaacagca catgtgcaag
     1501 ctgccatttt tagaaaaatt tatttagcaa aattgttaaa tgaatgtaat tataaagaat
     1561 taattgatga tttgggagtt aaaacaaagg aggaagcttt tatgatttta aaacaaaata
     1621 atattaatga taaatctgta aaattattgg gtactggtaa ttcacgaaga gaatttttac
     1681 attgtgagga tttggcagaa gctagtattt atattatgaa aaatatatct tttaatgaag
     1741 ttgtcgaacg agaaggatgg aatcagggta atgctcatat taatattgga acaggagagg
     1801 atatatcaat taaagaattg gcttatatga ttaaagatat tcttgagtat agaggagaag
     1861 tgctttttga aaataagatg gaaaatgatg gaactgccag aaaagttata gatactaata
     1921 aaattagagc attaggatgg cattataaga tagaattaag agatggtttg gtgagaatgt
     1981 atcatgacta taaaaaagga gtaaaacaaa atgaaaaaat atacactagc ttcatcaact
     2041 tgggatgaaa aagaattaca agcgatacaa gatgttatta aaagcgatat gtttactatg
     2101 ggtaaaaagg tggctgaatt tgaaaaagat tttgctaaat ttgtgggttc taagtatgct
     2161 gttatgacaa gctcaggttc tactgcaaat ttgatagcaa cagcagcatt attttatact
     2221 aaaaatccta agttaaaaag aggagatgaa gtaatagttc ctgctgtatc atggagtact
     2281 acttattatc cactttatca gtatggtttg aagttaaaat ttgtagatat agatctagaa
     2341 acactaaatt atgatttaga agcattaagt agtgctatta gcgataaaac aaaaatgatt
     2401 atggttgtca atttattagg caatcctaat gattttgatg cgattaatga tcttataaaa
     2461 ggaaaagata ttatcttgct agaagataac tgcgaatcaa tgggtgcaga gtataaagga
     2521 aatcaagctg gaacttttgg catcatggga actttctcga catttttttc tcatcacatg
     2581 gctacgatgg aaggtggttt tgttgttaca gatgatgagg aattgtatca tatattgctt
     2641 tgtttaagag cgcatggttg gacgagaaat ttaccaaaag aaaatttagt ggctaataaa
     2701 agcgatgatt ggtttagcga atcatttcgt tttgtattgc caggatataa tgtgcgtcct
     2761 gtagaaatga gcggagctat aggcatagag caacttaaaa aattacctat gtttttaaaa
     2821 caccgcaggg aaaatgctaa attattttgc gagtattttc aaaatcatcc cgaatttatt
     2881 atacaaaaag aaatcggaag tagctcttgg tttggatttt cattagtgat tagaccaaat
     2941 tctaaattgc aaagaaaaga tattattaaa aaattagaag aaaatggcat agagtatcgt
     3001 cctatagcta cgggtgattt tactcaaaat gaagtgatta aatactttga ttacgaaatt
     3061 cataatgagc ttaaaaatgc aaaatatatt cacgaaagag ggttttttgt agggaatcat
     3121 cagtttagca ttagtgaaca aattaattta tttaaaaaag tattggataa tctatgaaaa
     3181 aaacagcatt aattactggt tttacagggc aagttggctc gcaaatggca gattttttac
     3241 tagaaaatac agactatgat gttataggca tgatgcgttg gcaagagcca atggataata
     3301 tctatcattt aagcgacagg ataaacaaaa aagataggat cagcattttt tatgctgatt
     3361 taaacgatta ctcaagtatt caaaagcttt ttgaaagcaa aagacctgat gtgatctttc
     3421 atctagccgc acagtcttac ccaaaaactt cttttgatat acctatagaa actctacaga
     3481 caaatatcat aggcacagca aatattttag aaaatattag attattaaaa gctaaagatg
     3541 gttacgatcc tgtggtgcat gtttgctctt ctagtgaagt ttatggcagg gcaaaagttg
     3601 gtgtcaagct aaatgaagat acgacttttc acggtgcaag cccttatagt ataagtaaaa
     3661 ttggcacgga ttatttagga agattttacg gtgaggccta tggtataaaa acatatgtta
     3721 ccagaatggg aactcatagt ggtccaaggc gctctgatgt attttttgaa agcactgttg
     3781 caaagcagat tgccttgatc gaagcagggt atcaagagcc tgttgtaaaa gtaggaaact
     3841 tatctagtgt aagaaccttt caggattgtc gtgatgctat aagagcttat tatctacttt
     3901 cattagaaag tgaaaaaggc aaggttcctt gtggagaagc tttcaatata gccggtgaag
     3961 aagcctttaa acttcctgaa gttattgata tacttttagg tttttctaca agaaaagata
     4021 tcaaagtgga agaagatgaa gaaagattac gtcctattga tgcagactat caaatgtttg
     4081 acaatactaa aatcaaaagt tatatcaatt ggaagccaga aattccagct agaaaaatgt
     4141 ttgaggattt attaaatcat tggagaaaag aaatctccat gggcagaatc ccacttaata
     4201 ggtagcagat catgataatc cgttctcaaa cacctttgcg tttaggttta gcgggggggg
     4261 gtactgatat aaatttatat tgtgatcaat atacaggtta tgttttaaat gcgactatat
     4321 ctttatacat acattgtact ttgatcgaaa gagaagatgg aaaaatcatt tttgattcgc
     4381 ctgatacaaa ttcttactct gagtacgaaa gcaaagaatt cttagaaaat gatggaaaat
     4441 tagatatttt taaaagcatt tacaatcgca ttgtaaaaga ttttacaaaa aaacctttga
     4501 gtttttcttt gcatacttat tcggatgtac caagtggtag tggcttgggc ggaagctcaa
     4561 ccttagttgt aggtgttata aaagcttttt cagaatggct taatttacct ttaggggaat
     4621 atgaaatcgc taagcttgct tatgagatag aaagagaaga tttaggcata gtaggcggag
     4681 cacaagatca atacgctgca acttttggcg gctttaattt tatggaattt tataacaata
     4741 aaagagtcat tgttaatcct ttgcgtataa aaaactggat tgcaagtgag cttgaaacta
     4801 gaattgtgct ttattttaca aatatcacaa gagaagcaaa agatatagaa gaacataaaa
     4861 aaggaaaact tggagatgaa aaatctctcg aagctatgca cgccataaag caagatgcaa
     4921 taaagatgaa agaagctttg tttaaggcgg attttgatac tttggcgaaa attttaggaa
     4981 aatcttggca gtcaaaaaaa atcatttctg aaattgttag taatgatgag cttgaaagaa
     5041 tttataaact agctatagat aatggagctt atagtggcaa aaccagtgga gcaggagcag
     5101 gtgggtttat gtttttcttt gtggatccta ctaaaaaata caacttaatc aaaactttaa
     5161 gcaaagagca aggttatgtg caggattttt catttacaaa agaaggggtt aaatcatgga
     5221 gaatttaaat tcatatataa aagaacattt tcaagaatca attttagtaa aagagcaaat
     5281 tttaaaagat gagaatttaa taactcttat taaaaatact tcattagaag tcataaaagc
     5341 ttataaaaat ggtaacaaaa ctttattagc aggaaatggt ggcagtgctg cagatgcaca
     5401 gcatatcgca ggggaatttg taagtagatt ttattttgat agaccaggga tcgcaagtat
     5461 tgcactttca acggacacga gtatattaac tgctatcagc aatgattatg gttatgaaaa
     5521 tttgtttgca agacaagtgc aagctcaagg agttaaggga gatgttttta taggaatttc
     5581 tacaagtgga aatagtaaaa atattttaaa ggctttagag ctttgcaaac aaaaagaaat
     5641 cataagcata ggcttaagcg gagctagtgg cggggctatg aatgagcttt gtgattattg
     5701 tataaaagta ccttcaactt gcacgccaag aattcaagaa gcacatattt taataggaca
     5761 tattatttgt gctatcgttg aagaagagct ttttggtaaa ggtttttctt gcaagcaata
     5821 atactttgtg gtggcttagg aacaaggctt aaaagcgtta taaaagacat tcctaagcct
     5881 atggcaccca taaataataa gcctttttta gaatttattt ttgagtatct taaaaagcaa
     5941 ggcataaaag aagttatctt agcagtatca tacaagtatg aggtgataca agaatatttt
     6001 aaagatgagt ttttaggtat aaaaataaaa tacagtatag aaaaagaacc tctaggaaca
     6061 ggcggagcca taaaagaggc tttgaaattt ataaaaaatg aagtttatgt tttaaatggc
     6121 gatacttttt tcgacataga tttaagtaaa ttaaagctaa atggaagtaa aatttgtctc
     6181 gctctaaaac aaatgaatga ttttgataga tatggcacgg taaatgttga tgggcaaggt
     6241 tttgttattt cctttgagga aaaaatattt aaaacacagg gtttaattaa tggtggaatt
     6301 tatcttttaa ctaaagatat ttttaatgaa tttgatttag ag
//
LOCUS       DAPIWV010000098         6323 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.099, whole genome shotgun sequence.
ACCESSION   DAPIWV010000098 DAPIWV010000000
VERSION     DAPIWV010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6323
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.099"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(1..776)
                     /locus_tag="RJ272_001426"
                     /pseudo
     CDS             complement(1..776)
                     /locus_tag="RJ272_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(982..2703)
                     /locus_tag="RJ272_001427"
     CDS             complement(982..2703)
                     /locus_tag="RJ272_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HDV7382485.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            complement(2705..3433)
                     /locus_tag="RJ272_001428"
     CDS             complement(2705..3433)
                     /locus_tag="RJ272_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HDV7382486.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            complement(3569..4273)
                     /locus_tag="RJ272_001429"
     CDS             complement(3569..4273)
                     /locus_tag="RJ272_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HDV7382487.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            complement(4273..6102)
                     /locus_tag="RJ272_001430"
     CDS             complement(4273..6102)
                     /locus_tag="RJ272_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7382488.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFEALLINKPILTKI
                     AKNFLEQSQILIQEKSKFLDLKKAELRKRRVQILNVRESIKED"
     gene            complement(6092..>6323)
                     /locus_tag="RJ272_001431"
     CDS             complement(6092..>6323)
                     /locus_tag="RJ272_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7382489.1"
                     /translation="KMSEILNSLNINGAFFEFLNDKLKHYEKNQKSKLESLEKVLQSL
                     KNQDANILNSFEENLEKIEKLKQLEMGLLNAD"
BASE COUNT         2032 a         1160 c          775 g         2356 t
ORIGIN      
        1 tcaagctttt atatctataa tttttgccga agtgttttga gaaagaaatt tattaaattc
       61 tcctgcacta tcatcactaa atttcatacc aaaaagaagt tctaattctt cacttttacc
      121 aaatttattt tctaataatt tttttaaaag ctcgttttta gcattgtcat ctttgtaagt
      181 ttctttgttt ttgctttcgc cttgaatggc tttgaagggt ttttcatctg ggttttgacc
      241 actttcattg ctttcttggg tagaatttga gctttgttgt ttatttaaaa acctatctat
      301 ctcttcttga gtaagtggtt taacatcaag tgcgtcaata aatcgttttt tctttcatct
      361 ttttcagcaa cccatattct tgcgaattca cccacacttg taagagtttt tagaagattg
      421 cctttgcgta ttctggaaat cttatctcct ggaataaatt caatattatc aatctcatat
      481 gctccgttaa gaatttccca ttcctcttca gttaatttat cttttcgcat tcgctcaagc
      541 aaggaatttt caacttcttt aacatctggg tctccattat agccgtattt gttcgcatat
      601 tctttactaa gcatttctcc aaagtatttt tgcacaaaat cttcccaata agcatcttct
      661 tcactttttg gctcatcttt tttagtataa gtatattcat tattttcatc ttttttaatg
      721 cttaaagcat tatttggata attgatatta ggatagtgag aattaaaatt taccatagaa
      781 aacccttttt ttatgatatt ttattaaaat aatcttggat tccaaccacc aagagcagac
      841 tccatttgcc tttttgtata attgtagctc gaataagaat ttataccatt aatcattttt
      901 gccttccttg atattatact atatcggaag aaaattaaaa atttataatc ttgagagttt
      961 tcaaaaactc tcaagttatt atcaagctaa gctttttcca cttttatgat attttaaaat
     1021 accttcagca cagcgataag ccaaagctcc cacagtatca gttggattat atccactatt
     1081 gtgttggaaa tttcctgctc ctacaacaaa aagattatcc gcatcccagt gttgtaaata
     1141 agtattaacc acactagttt ctctatctgc acccatggtt gttccacctg tgttatgagt
     1201 agattgataa ggcacaacgc tataatcctt aagataagca ccttttttga ttgattttac
     1261 tccttgcatt ctttttgcta cctcagctgt tttatctgtg ataaatttat gcaaagctct
     1321 atcttgatcg gtgaaattat aagttaagcg taaaagtggc ataccaaaag catctttata
     1381 agttggatca agacttaaat aattattctt atgaggcaaa gaagcacctt gtcctgctac
     1441 ggtaatagct cttgtgaaat tatagtttaa tgctttttta aattcagcac cccaagttgg
     1501 agctcctgct ggaagtgggg ctgattgtat agggcgagtt ccaagctgaa cgctataaat
     1561 catagctcca tgaaggaatt tttccttaga atgatcaaaa ttatctccgt taaaatcatc
     1621 actcgtagtt cctaaagcac ctgaacccat gaaggtgtta aattgctcat caaagaaagc
     1681 tgttgtaccc atgttcattt gataacaata atttctacct aaagttcctt tacctgtttt
     1741 tggatcgtat tgctcaccta tgttgcttac cattaaaagc ttagcattgt taaacatata
     1801 acttgtaagt acaactatat cagcaggctg gatatactct ttcatcgttc tagtatcgac
     1861 aaattttacc cccgttactt ttccgtcttt tttaagaatt tgcgttacat tactataagt
     1921 gcgtatggtg tatttacctg tgctcatagc ctttggaatt actgtgttta aaggacttgc
     1981 ttttgcacca tactcacaac caaaacgctc acaatacgca cagtattgac aaggagctaa
     2041 atcttgacca tcagggtttg tatagccacc tttagaattt gaagctggca aacgataagt
     2101 gtgtaaattt gaactttttg ctgcactttc aaatcgttta agcattttag tattttcaag
     2161 aggttcttgt ggataaggac tggatctaaa agctcccatt ttttccgcta aaggatttgg
     2221 ttcacctgat accccacagg ttttttcaaa tctatcataa taaggctcca tatccttata
     2281 agtcacgccc caatcttgca aggtataatc attacctaat ttattaccat atctttgttt
     2341 gcttagggtt tgaatttcaa agtcataagg cataaaccta aaagtccaac cattccaatg
     2401 cacccctgca ccgccaacat tattacccaa taaaaacgaa cccattttac gataaggtaa
     2461 ggctaaacca ctaggatcat ggcgaaaagt cacagtgtct tttgagcaat cttgcatcaa
     2521 accataatta atcccatatc tccactcatc atggatataa ttaaaatttt cagtactttg
     2581 catatgtccg cgttctaaac taagtacatt caaacctgct ttagtaagct ctgcagccac
     2641 tatacctcca gtccatcctg ctccaactgt tactacatct acttttttta atacttcagc
     2701 cattttaact ctccatatct gctaaaccca taggttcaat gttaaaaaat tcatcacttg
     2761 caattttatc cacatagctc atttgtgcgc ctggatattg catcattctc caaccatttt
     2821 tattatcatt tccgccataa attggatcag ctaaaactcc agctactgtc atatctctta
     2881 aaagtgtgaa aaaataagaa gatttaaaac ctgtagtttg aatttttcct ttttcaaaat
     2941 cgcttaaaat tttatcctga tctccacctt taagcaaaga aaaagatttt ttataacgct
     3001 tttgagcatt ttcttcaaga gcatgcacgc cttctaaaaa aatatctttg cgttgcatag
     3061 gagtttgata gccttgttcg gctttgccct ccatgaaagg cccttgcata tattctctat
     3121 cattataacc ataagcacta gctagctgat tatcgataaa ataaggcacg cctaaaccta
     3181 tagctccttc tccttgctca tctttaggat aaattctttc acaggctgca cttaaggtat
     3241 caaattcagt ttgagtttga aaaaacattc tacctctaat tttatttgat tttccttgtg
     3301 aagcttgatg cgaatgcgta agttctgctg cctttaaaac agcaccgcca cctatagtgc
     3361 tagctgctac tacagaacca cctagaagcc ctagtttaaa aaagcttctg cgatcaataa
     3421 tattgtcttg cattacttct ccttgataat aatttaaaca agattatatt agtcctatta
     3481 atataaattt aactttaaaa agcgataaat tttgtgttat tcttaatttt atttaagaat
     3541 atctttgaaa gcaatgaaaa tagaactttt aataaagctc tatatcttta gaattaagtt
     3601 ctttataagc tgcacaagct tcttgatgtt tttgatcaca agccatacca aaatatcttt
     3661 tcgcctttgt taaatcttgt ttttctagtt gattatagcg tcctaacaaa taacaagact
     3721 caccaaaacc taaagtgcaa gatttagaat aaaaagcaag ggcagatttt acacttgctt
     3781 taacaagctc tcctttatca tataaagacc ctaattgata acaagctctt gcatttttta
     3841 aatcacaaga tcttttataa aaacttgagg ccatttgtcc atctttttct ttttcataaa
     3901 ataaagctat attattacaa cttaacgatt ctcctaaagt acaagcttta ttaaaagcca
     3961 aaagagcttc atttttataa ccttgatttt gcaaaagcaa agccatatta gaacacgcac
     4021 ttgctaaacc taatttgcaa gctttatcat aaaatttata agcttgattt aaatccttac
     4081 tcataccctt agcactttcg tacataaaag ctaaagaaaa acaagcttta gaaatatctt
     4141 tttcacaaag gcttttaaaa atttcataag ctttatcaaa tttatttgct tcataaagtt
     4201 tcaaaccttc ttctaattca cttaatgcaa gtaatgaatt aaaaaataaa aataaagcta
     4261 aaaatattct catcaatctt cctttatact ttctctaaca tttaaaatct gtactcttct
     4321 ttttcgaagt tctgcttttt taagatctaa aaatttactt ttttcttgga ttaaaatttg
     4381 actttgttct aaaaaatttt ttgcaatttt tgtcaaaata ggcttattaa taagcaaagc
     4441 ttcaaactca taaacattta attcatttaa aactctttca taaatttcac tttttttagg
     4501 ataaaaaagt acaaattcag aactatcaag ctcataaaga acacggcttt cattgatttt
     4561 acgactaaaa aatgcaaggc ttagttttgt agcattttca taatttgtaa aagccttaag
     4621 atttaatttt tcaaaaaata aatcaagttc taaaatactt ttaaataaaa gctctttaaa
     4681 atctttcaaa aagtactcat cgcttgcatt gcaaaaagct cttaattcac taaaattttt
     4741 atcactttgg aaaatgtgat ctttttgtat gtttgaaaat tctgctttaa aaagcaaaat
     4801 ttctctttca agtatgttta taaaatcttt taatttcatc ttgatttctt caaaagattt
     4861 ataaagttca tttttgattt ttttaaactc tttactcatc acatcactat tataaaacat
     4921 cgccaaaaaa gcatcgtcgc ttgaaatata aggcgcttta taatcatatc ttgtgtataa
     4981 atctttcttt aaaaatcctt tgctttcttt gtaaaaataa gcatcttttt ccttaacact
     5041 tgcaaaaatt tcactagaaa ttctttcgct aatgctttta agctgttcta aaatctgatg
     5101 atttaaaatt tcaatctctt ttaaaaaatt ttcatacgct aaaagtaaat gcttttcata
     5161 actttgaaat tgatttaata aacgatcaaa aatacctaca aaaagttggt tttcatcttc
     5221 taaaatttcg cataaattta aaatttttct tttaacaaat ttttctttta aagctgttgt
     5281 atctagctga gttaaaaaat caagcaaaga ttgaaaatta gatttttcat agctttgctc
     5341 atctttagct tctttgcaag aaatagcaat aagctcatta aaatatttta aaaacacact
     5401 ttttgcataa tttaaaacat tatctagctc ttctgcgctt aatttatctt tttgatttaa
     5461 tacacaaatg ctattttctc ctaaaagttc taaatttgct tttatggcat cttcttcact
     5521 ttttttacct gcattatcaa ttaaacttaa ccaaatcgcc ccatgaatat ttttaagttc
     5581 atcaagagtt gttaaagtat cattttcatt tgcatttaaa cctggagtat ctacaagagt
     5641 gattttttca agtaaaggaa tgggtgcaaa aatatgcaaa ctttttgctt gttttacttc
     5701 atttctttga tccgtataaa aggctaattt ttctatattt gtgataatat cacttccatc
     5761 ttcaaattct actcttaaaa aatattcttt tgcatagcgt aaaaaagtag gtttaaaagt
     5821 aacaggaaca acacccgtag gcaaacaatc acgccctaag atcaaattta gcaaacttga
     5881 tttaccactt gaaaactgcc ctataatagc gatattaaca ttcttatcca aagaaaacac
     5941 aagctctttt aattcatttt ctaaagcata acttgcgtgc ataaaaggct cgttaagttc
     6001 cttgcaaagc tcttgaatac gccctttaaa actatcatca aaactcacgc tataggtatt
     6061 ttcataggct tttataaaat catttaaaag attaatctgc atttaaaagc cccatttcaa
     6121 gttgttttaa tttttcaatt ttttctaaat tttcttcaaa agaatttaaa atattagcat
     6181 cttgattttt cagactctgt aaaacttttt caagactttc taattttgat ttttgatttt
     6241 tttcataatg ttttaattta tcatttaaaa actcaaaaaa tgctccattg atatttaaag
     6301 agtttaaaat ttcgctcatt tta
//
LOCUS       DAPIWV010000099         6190 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.100, whole genome shotgun sequence.
ACCESSION   DAPIWV010000099 DAPIWV010000000
VERSION     DAPIWV010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6190
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.100"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            34..483
                     /locus_tag="RJ272_001432"
     CDS             34..483
                     /locus_tag="RJ272_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDV7382490.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            548..1585
                     /locus_tag="RJ272_001433"
     CDS             548..1585
                     /locus_tag="RJ272_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7382491.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKI
                     PIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(1582..2313)
                     /locus_tag="RJ272_001434"
     CDS             complement(1582..2313)
                     /locus_tag="RJ272_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDV7382492.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(2288..3037)
                     /locus_tag="RJ272_001435"
     CDS             complement(2288..3037)
                     /locus_tag="RJ272_001435"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDV7382493.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(3034..3639)
                     /locus_tag="RJ272_001436"
     CDS             complement(3034..3639)
                     /locus_tag="RJ272_001436"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDV7382494.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPNIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            3700..4689
                     /locus_tag="RJ272_001437"
     CDS             3700..4689
                     /locus_tag="RJ272_001437"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDV7382495.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIGDKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            5260..6117
                     /locus_tag="RJ272_001438"
     CDS             5260..6117
                     /locus_tag="RJ272_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382496.1"
                     /translation="MALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGL
                     VFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILN
                     LLVLTFSFILEVISFEDCRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIW
                     QGLSVFGSHLLFIPDFMVDQQIVYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLI
                     FAFYVCIEILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLML
                     KGQKNVKIC"
BASE COUNT         2061 a          800 c          959 g         2370 t
ORIGIN      
        1 tataatttta aaaattaaaa aaaggagtca atcatgtcag ttacaaaaca attattacaa
       61 atgcaagcag atgctcatca tctatgggtt aaatttcata attatcactg gaatgtaaaa
      121 ggtttgcaat ttttttctat acacgagtac acagaaaaag cttatgaaga aatggcagaa
      181 ctttttgata gttgtgctga aagagtttta cagcttggcg aaaaagctat cacttgccaa
      241 aaagttttaa tggaaaatgc aaaaagtcca aaagttgcaa aagattgctt tactccgctt
      301 gaagtcatag aactgatcaa acaagattat gaatatcttt tagcagaatt taaaaaactc
      361 aatgaagcag cagaaaaaga aagtgatacc acaacagctg cttttgcgca agaaaatatt
      421 gcaaaatatg aaaaaagtct ttggatgata ggtgctactt tacagggtgc ttgcaaaatg
      481 taatttaagg ggctttatgc cccaattata caaactaggt tataatatcc ttttttaaag
      541 gataaaattg aaagtactta atttttttta tgaaaatcac cctaaatttg aagtaagtta
      601 tgaaagaaaa aatcaaattt caaaaccaaa tattatcata aaaggcccac gattttgtgg
      661 taaaaaaaca cttattttta attttttatc tcaatttaaa gcaagtgaaa ttttgttttt
      721 agatttatat gatacacgct ttgaaaaaca aagtttggaa agacttgctg attttctgaa
      781 tgaaaattta caaattaaaa ttctttgcct ttataatttg gattttatcc ctaatttaga
      841 aaaaattaaa attcccatca tcttaagtac aaatataaaa gatttaaata taaatgggtt
      901 tgaagagctt gaacttgatt attttgattt tgaagaattt attagtgtaa gtaagaaaaa
      961 tttacctata aataatttag taggtctttt tttacaaagt ggacgcagta aatttggaga
     1021 aaaaaacata cttctaagac aaagctttac tcttttagaa ttagaaattt taaagtattt
     1081 agctttaaat ttgggtcagc aaatcagtat ttctaagata tttatagaac ttaaaaaaag
     1141 attaaaaact tcaaaagata gtgtttatca agctataaaa aaattagaaa atacttatgt
     1201 gatctatact ttaaaacatg atgaaaaaaa acttcaaaag atttatttta aagattttgg
     1261 cctaagaaat aatctttgta tttcaaagga tttttcgcat ttatttgaaa atttagtttt
     1321 aagcgagttg tttaaattta aagaagattt tttttataac aaatacttta acttttatag
     1381 ccaaatatct aaaattgctt atatttcaag tccaacttta gatattgatt tgattaaatt
     1441 acgtgctaag aaaattttac caaaggcttt agaacttgga atttttcatg tgatttttat
     1501 cactctttca agcgaggata gtttttttga gcaaggggtt aaatttgaag tcatatcttt
     1561 tgataaattt tcacttggat tttaggtgtt atttgagttt gtatcgtatt tttcaaggtt
     1621 gtatcgtttg atgatttttg taataagatt gatataatat cccttgcgtt cagaataaga
     1681 atctaaagtt ttaatagcct ctagtcctgt tatctctttg ccttcgcttg caaatttagc
     1741 tcttgcatcg cgaaactttt cataagcaaa atgacgattt aaatttaaaa cataagagta
     1801 aacactatct tgcagactat caaaaatctt aattttatgt tttttatctg gatgtcttaa
     1861 atcaggaatt aaacctttct caccccaagt ccattctcca aaaagattat ttgcttctct
     1921 tgcgaagcga cttgtacctg tagcactttc aactaaagct tgggctatac ccatggattt
     1981 tggaattttt tgaatacgtt ttttatattc tgcaaaatca taaagatttt caatgcgata
     2041 tttgtttttt atcgtgataa gtttttcaag atttgtttga tttgaagtcc taaagcctgt
     2101 tttgtaagca tctttaaaaa aggcttcaat aaaagctctt tcttgttcaa tttttttaaa
     2161 gctttgatca aacatttcat tcatttttat aaaaaaaatt tgtctttttt gatctatatc
     2221 aagtttgtaa tattcctctc caaagccatt ttttagatca tcagcaaaaa gtgggattag
     2281 aaaaagacta agaaaaatta taattggctt caaaacaata ctttaccttt ccttcaaaaa
     2341 acaattcttc atttttatat gtaaacccaa cctcttcacc acttttagga gttattttaa
     2401 ctttattttg tactttttta tttaaaaatg ccagataaaa acaagccccc attcctgtgc
     2461 cacaagctaa ggtttcatct tcaactccgc gttcataggt acgaactttt aaatgatttt
     2521 catctaaaat ttttacaaaa ttaacattgg cattatattt ttgtctcatt ttttgacaaa
     2581 gtattgtatc aaattcatct aaattttgac aaaaatgcac tagatgtgga actccagtgt
     2641 cgcaaagttg ccaagttttt cctaattctt caaaagtatt ttgcacgctt tttattttgc
     2701 ctaaagatac ttcaacttta tcttgattta cctttgcttt tattattcct gcaccggtta
     2761 aaaaactcat gttaggattt attttgttaa tatgatgtgc aaaatgtgcc gcagcccttg
     2821 agccattgcc acacatagca gcccttgagc catcgttatt ataaaattcc cattcaaagt
     2881 cgtatttttc atgaggcaat atcacgataa agccatcccc acctatgccc tcataacgat
     2941 tgcaaagttc tttagctaaa gcacttctat cttcttttct atcagcattt gttatgacaa
     3001 aatcattccc acttgcacaa tatttataaa atttcacatt tttcctttag aaatttcttg
     3061 tattacttta acacattctt gcctaaaatc gacataagaa ttagtatttt taatgataaa
     3121 atctgctttt ttaagttttt cttcaatatc tatttgagaa tcaagtctca cttttgcagc
     3181 ttctaagctg agcttatctc tttgcatgat tcttttaagg cttaattctt taggtgtgta
     3241 aattacaatg actttgccta aattttcata agcaccgctt tcaaaaaaaa gaggaatttc
     3301 tacaaaaaaa gctttatttt ctttatctag aatttgcatt tgttctaaaa ttttagctcg
     3361 aatgttagga tgagtgaaat tttctaaggt ttttttagct tctttgttgt taaaaacaat
     3421 ttctccaagg atttttctat cgattttctt ttcttttgtg agtaaatttt ttaagttaaa
     3481 gggagaaaaa atcttttcaa gttctaaagc attttcatct aaaattttat gagcaatttt
     3541 atctgcgcta atgcttttaa agcctaaaga attcgctatt tctataaaag tgcttttacc
     3601 acaagcaatt gaagcggtta caaaaaaagc atttttcatc ttatgcctta ttaaaacttt
     3661 tttcgttaaa ataccttttt agttcttaaa ggaaaataaa tgaaaatttc atatgaagat
     3721 gcaggcgtaa gtatagataa tggaaatgcc tttgtagagg ctataaaacc tttggttaaa
     3781 gaaactttta atgataatgt tgtaggcgga attggttctt ttgctggtgc ttttagaatg
     3841 ccaagtggtt ttaaaaagcc tgtgatttta ggtgcaacag atggtgttgg taccaagctt
     3901 cgcttggcaa ttgatgctaa aaaatatgat actatagggc aagatttagt agcaatgtgt
     3961 gtgaatgatt tgatttgtaa ttttgctacg cctttgtttt tcctagatta ttatgctaca
     4021 gctaagcttg aagtagaagt agcaaaggct gttgtatcag gcattgccaa gggatgtaag
     4081 atggcaaatt gtgcattaat cggcggagaa actgctgaaa tgcctggaat gtatgcaaaa
     4141 gatgattttg atcttgcggg ttttgcagtg ggtatggctg aagaagatga gatcgataga
     4201 agtaaatttg ttaaaaatgg tgatatttta ttggcacttc ctagttcagg acttcattca
     4261 aatggttatt ctttagctag aaaagtactt tttgaaagtt taaaattaaa atttgatgac
     4321 aagatagggg ataaaaattt aattgatatt ttattagagc ctacaaggat ttatgtgcgt
     4381 gattttctta cattaaagcc ttatattagt gctctagctc atattacagg gggtggttta
     4441 gtagaaaatt taccacgcgt tttgcctcgt ggtatgggtg caactatacg caaacatcat
     4501 cttaaaactc ctgaaatttt ttatactata ggacaggctg tagaagaaag cgaaatgtat
     4561 agaagcttta acatgggagt gggtttagta atggttgtag atccttctaa tgtaagtaag
     4621 gttttagaaa attcagatgc ctttattatc ggcgaaattt gcattaatga aggtattgtt
     4681 ttagagtgaa aacaaattat tatgattatt tatgtgctaa aatgtatgta attttgccca
     4741 taaaagccca taaagacaaa ctaaaatttt atctttctta tgtaaataag aaagataaaa
     4801 tttttagagt taatgtgtgg aagtgggcgg ttttgataaa aattgccaaa gatgataaaa
     4861 cgaaatattt ttgttcgaat gtattaaata aagggtaaaa tgcacaattt aaatgaagct
     4921 ttgtttcaaa aaaagataaa agaaattcgc ttaaaagcaa tagcgagtat tatttgtggg
     4981 tttttaggta tcattcctta tcttggagtt ttatttgttc ttgcgagttg gattttattt
     5041 tttattgtgc tttatgattt aaaaatctat ggtggtgcta aaaatttgtt taagaatttc
     5101 cttattagtg cagggattgg attttttggt attcttgtta atacaagtat tttatttgca
     5161 atgctaaagc ctagaactgg catttttggt gggctttatt ttaatcaaga taatattttt
     5221 atggctattg ctatattttt agtattacat tttgctattt tggctttaat ttttcctttt
     5281 ttgaaagctt tttactatga aattgctaga acaacaaagc aaaagtattt cacttatgct
     5341 tttaatacct tttatttagg gcttcttact ttgattatcg gcataggctt ggtgtttttg
     5401 ctagcaagtt tggttttttg gattttagcg tgggtcaaat ttaaagaatt tgatgagcaa
     5461 gaactttcaa atttagaaga aagattggca aaagcacaaa aaaaggtttt tgattttgat
     5521 ttaaaatgga ttaaaatcac aatggcttca tttataattt taaacttgct cgttttaaca
     5581 ttttcgttta tattagaagt tattagcttt gaagattgta ggttttacta cacaaaaaaa
     5641 actttatttt acacagccat aatcctagct ttgcttagtg tgtttttgtt ttgtaaaaag
     5701 ataaaaaatt acaaactttt tatttatttt ttcatatggc aaggtttaag tgtttttggt
     5761 agtcatcttc tttttattcc tgattttatg gtagatcaac aaattgtata tggaagttta
     5821 aacataatat taagtctatg ctatattatt tttgcttttt tattttttaa aattttgatt
     5881 caaattacaa aggaaaaact tttttatctt atttttgcat tttatgtttg catagaaatt
     5941 ttgataatat taattttctt tatttttatg atggttgata actattatat atttacaaaa
     6001 agtcctataa agatgctcat agataattat aaattacttt ttcaagttgt ttatttcgtt
     6061 tcatttttaa ttgtttggct tatgcttaaa ggacaaaaaa atgtaaaaat atgttagaat
     6121 gatgaaaaaa tactatttta cgtagatgtt tattaggata tattcgtatg tcttaaagct
     6181 ctttatgggg
//
LOCUS       DAPIWV010000100         6127 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.101, whole genome shotgun sequence.
ACCESSION   DAPIWV010000100 DAPIWV010000000
VERSION     DAPIWV010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6127
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.101"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..732)
                     /locus_tag="RJ272_001439"
     CDS             complement(<1..732)
                     /locus_tag="RJ272_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7382497.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKP"
     gene            complement(734..1420)
                     /locus_tag="RJ272_001440"
     CDS             complement(734..1420)
                     /locus_tag="RJ272_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7382498.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKIKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            1499..2308
                     /locus_tag="RJ272_001441"
     CDS             1499..2308
                     /locus_tag="RJ272_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7382499.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKDFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            2450..3217
                     /locus_tag="RJ272_001442"
     CDS             2450..3217
                     /locus_tag="RJ272_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HDV7382500.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHCKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            3227..3967
                     /gene="pxpB"
                     /locus_tag="RJ272_001443"
     CDS             3227..3967
                     /gene="pxpB"
                     /locus_tag="RJ272_001443"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDV7382501.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSTYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLTEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            3948..4913
                     /locus_tag="RJ272_001444"
     CDS             3948..4913
                     /locus_tag="RJ272_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDV7382502.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(4910..5803)
                     /locus_tag="RJ272_001445"
     CDS             complement(4910..5803)
                     /locus_tag="RJ272_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7382503.1"
                     /translation="MKESYLFILLFIAMFLWGSSWPTSKILANYTDTSIITFWRFFFV
                     VSGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTTM
                     IPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFNI
                     LFLTCSFIWALIAVFNHKAKGAHPLAINFYINLISVLMFSWVLFDVKSYEIFHFEFKF
                     WISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNALT
                     LLGCALAIGAIYFINIYGKKA"
     gene            complement(5821..>6127)
                     /locus_tag="RJ272_001446"
     CDS             complement(5821..>6127)
                     /locus_tag="RJ272_001446"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382504.1"
                     /translation="KVIPISFIPAFIFLLVLLNPYIIRISKIGNYNQSFALYNKTEVK
                     ELLNSKHIPIFKENNATLFVKDLYIVSNLGEKYLIKNDQNETFTLNKQDIFSLLDKI"
BASE COUNT         2313 a          850 c          989 g         1975 t
ORIGIN      
        1 aggtttttta aaatctttat attttttaca attactaaaa tctataaaat tacaaaattt
       61 cacaccttga ttttctagtt caaaaacatt agtattttca aattctaaaa tttctccact
      121 gtgtaaataa agcttttttt gcgccaaaga atctaaaaaa tgtttatcat gacttgcgat
      181 taaaaaacct gtattgaaat tttcatgcat tttaagaata gcttttttaa ataaaagtgt
      241 agtattttta tccaaaaaag cacttggttc atcaagtaaa taatacttcg ctcttacgct
      301 taaagctata gcaaaagcta ttttttgact ttgtcctgat gaaagttcat taggatgttt
      361 acttaaaaga ctttcatcta aatttaaaaa catcaaactt tcttttatgc gttcttcaat
      421 atcttcttta atcccataag tttttaaggt aaataaaaaa tttgccctta cactacgatt
      481 taacaaaata ggctctggaa aaagcaaata aatttcacgc ttttgtttat tattaggttt
      541 aaaatttcca aaataagaaa tattttttga aaaatctcct tctaaaaatt ttaatattct
      601 taaaaatgta gattttccac ttccattcgc tcccattaag atgctaattt tacttgtatc
      661 aagttttaaa tttttgattt ttaaaacttc tttgttttga tagttgaaaa aaagattaga
      721 aatttctatc attttatgtt cttttgagtt tgtgcgtgat gaaatttaaa caaaaggcaa
      781 tgagaattaa aaccaaagcc aaagctatac cgctagcaaa ttcgcctttg tttgtttcaa
      841 gagaaatagc tgtggttatg gttctagtat cgtatttgat atttccacct actatcatcg
      901 ctactcctac ttctgctaca atgcgtccat aagctagtgc aacgacgcta atcaaagcaa
      961 agcgtaattc ataaatcatc gttaaaacaa gttttaaagg acttaggtga aaagatttta
     1021 taagtaaaaa atgtttttta ttcatatttt ctatcaaatt tgaaaaaagt gcgatcacta
     1081 taggaagcgc taagataaac tgccctaaaa ttaaagcctt tatagtaaaa agtagtccaa
     1141 attctcccaa aggtcctcga cttgaaatca gcgcataaag tataagtcct actgcaactg
     1201 ttggaaaaga gaggctagta tctatgataa gttttataaa gcgtttgatt ttaaaatcaa
     1261 aaaagcctaa gataaatccc aaaggaaaac ctataagcaa agctaaaact atagaaatac
     1321 ttgagcttaa aagtgtagtt tttatagctg aaattacgct ttcatcagca ttgaaaagta
     1381 aaaataaagc ctgtttaaaa ccatcaaaaa tataatccaa aaatatcctt tttaaaataa
     1441 gtaattttag cataattatg ctaaaatatt tttttatgta aatttataag gaaaaaaaat
     1501 gaaaaaaatc atttctttag cccttgcttt agctttaagt gcaagtgcag cagaacttaa
     1561 aatggcaact acaacaagca ctgacaatac aggactttta gatgctctaa aacctcttta
     1621 tgaaaaagaa agtggcaata ccttaaaatg ggttgccgta ggaacaggtg cggctttaaa
     1681 aatgggtgaa gattgcaatg ctgatgtgct ttttgtgcat tctccaaagg ctgaaaaaga
     1741 atttatgaaa aaagactttg gcgtagatag aactcctgtg atgtataatg attttatcat
     1801 catcgcagat aaatctttag cttctaaatt taaaggtaaa aatttaaaag aaagcttaga
     1861 acttatcaaa aatgaaaagc ttactttcat ctcaagaggt gataaatcag gcactgacaa
     1921 taaagaaaaa agcctttgga aaaatcttgg tggtgttcct gaaaagcaaa gctggtatca
     1981 acaaagcgga caaggtatgt tagcaagcat taaaatcgct gaagaaaaaa aaggtgtgat
     2041 tttaaccgat cgtggtactt atatcaaata tgaagccaat gaaaaaggca aaccaaactt
     2101 agttattgta aatgaaggcg atgatagtct taaaaatttt tattctgtta tagcgacaaa
     2161 tcctaagcat tgtaaaaatg taaattatac agaagctagt aaatttatca aatgggtaac
     2221 aagtgataag actttaaatt tcattgctga ttttaaactt cttaataaac ctttatttgt
     2281 aattgatgca aaaacaagaa aagactaaaa attaagcagg ttttaacctg cttaaaatat
     2341 cattttttac ttattgtaac ttttttattt atttttcaaa acttttagtt tatttaaaat
     2401 tcttctttag atataataaa atcaataatt aaatatacaa ggtcaaataa tgttcaaagt
     2461 ggatttaaat agtgatttag gggaaagttt tggcgcctat aaaatgggaa tggatgaaga
     2521 aattttaaaa tttgtaagtt cagtaaatgt cgcttgtggc tttcatgcgg gtgatccttg
     2581 cgtgatggat gaaaccttaa atttagccaa gcaaaatggt gtttgcatag gagcacatcc
     2641 atcttatcct gatcttttgg gttttggaag acgcaatatg caaataagct ttgaagaggc
     2701 taaaaactat gccttgtatc aactaggagc tttatttggc tttgctaagg caaaaggtat
     2761 gaaaatacag cattgtaaag cccatggggc gctttataat atggcagcta ttgatgaaaa
     2821 tttagcctta gcactttgtg aggcagtggc gagttttgat gaaaatatta tttttctagg
     2881 gcttagtaat tctgctatga atgaagcagc taagaaaaag ggtttaagat atgctaatga
     2941 agtttttgcg gatcgtgcct ataatgatga tggcacttta gtttcaagaa aattagaagg
     3001 ggcgttaata cacgatgaaa atttagctat caaacgcgtg ataaaaatga taaaagaaag
     3061 caaagttaca agcataaatg gcaaagaaat tgatttaaaa gccgatagta tttgtgttca
     3121 tggggataat gcaaaagctt tagaatttgt taaaaaaatc aaagaaaatt taaaaaaaga
     3181 gcaaattcaa atttgtgctt tggaaaattt tatataagtt ttagcaatgt ttagtgtgca
     3241 ttttagtgga agtaaagctt tgcttttgcg ttttgagcaa gaaatttcac ctcaaatcaa
     3301 tgcctatgtt ttaagcacag aacaaaggat acaaaaagcc ctaaaagaag gtgaaattta
     3361 tggtattgat gagttggtaa gtacttatgc aagtttgttg atatacttta atccttgcgt
     3421 gctttcttta aattctttgc ttgatttttt ggaaaaaatt aaaaaggata tcaaacttac
     3481 ggagcaaaac tcaagtcttt gtatagaagt tccactttgt tatgatgaag aatttgggct
     3541 ggatttagaa tttgtgtgca aacacaatca aatttcaaaa gaagagctta tatctcttca
     3601 cactaaacct tattatcttg tttttatgct aggttttatg gcaggttttc cttatcttgg
     3661 aggtttagat gaaagacttt ttaccccacg cctttcaagc cctagagcaa aaatagaagc
     3721 tggaagcgta ggcatagccg ataaacaaac aggagtttat cctatatcaa gcccaggggg
     3781 ttggcaaatc attgctagaa cacctttgga attttttgat aaagaagatg aaaaaaatcc
     3841 cactctttta aaagcgggta tgtttttaaa atttaaagcc atttcaaaag atgaattttt
     3901 cgatatccaa gagcaagttg ctaaaaaagt ctatcaaaag gaaatttatg agtataaaaa
     3961 tcattgaagc gtctataaat tcaagtttgc aagactttgg tagaaaaaaa tttgctaaat
     4021 ttggcatagc aagaagtgga gctatggatg aagatgcttt aagaatggca aatatcttgc
     4081 ttggaaacaa acaagatgaa gcaggaattg agctttgttt aaagggtgga aaatacgaat
     4141 ttttagatga gaattatttt gttttaagtg gagctgaatt tgaggcaaag cttgataatc
     4201 aaaaaatcaa aacttgcaaa gtatatcaag caaataaagg cgatatttta gaacttgatt
     4261 tagcaaaaat aggttttcgt gggtatttat gcgtagcggg tggctttgaa gtaaaaagtt
     4321 ttttaaactc taaatccagt gatgctaaaa tgggagctgg agtttttgaa ggaagagctt
     4381 tgcaaaaaga tgatatttta aatactcata atacttttat accttttaat ttagaagcta
     4441 gagaatgtga aaaccctctt tttaaaagcc ctaaagagcc tattatacgc gttattttag
     4501 gaacaaatga agatgctttt acccaaaaag gcatagaaac ctttttaaat actacttata
     4561 aagtaggttt aaaaagcgat agaatggcaa tttatgcaga atctagtgaa agtatagagc
     4621 ataaaaactc agcagatatc atctcagatc ctgcagtttt tggaagcata caagtgccaa
     4681 aaagtggtat tcctatcatt ttaatggcag gaagacaaag cacaggaggc tatacaaaaa
     4741 tagccacggt tatagaaaat gatctaagct tactcgcaca agctaagtta ggttctagct
     4801 ttaaatttca aagcattagc atgcaagaag ccttagaact ttataaacaa agagaaatga
     4861 aatttaaagc tatggatcaa aaaatcaatc ttgattttga aaatttaatc taagcttttt
     4921 taccataaat attgataaaa tatatagcac ctatagccaa ggcacaacct aacaaggtaa
     4981 gtgcatttgg cacctcgtct agtataaaat aactgcaaat taaagcacta gcaggagtga
     5041 ttaaaacaaa agaatttgcc ttaacgcttc ctaaaatgtg aatcccataa taataaatac
     5101 tagttcctat aatagttgat aaaaaagcca cgacaaacat actgatccaa aatttaaatt
     5161 caaaatgaaa aatttcataa ctttttacat caaacaatac ccaagaaaac attaaaacag
     5221 aaatgagatt aatataaaag ttaatcgcca aagggtgagc tcctttggct ttatgattaa
     5281 acactgctat caaagcccaa ataaaagaac aagttaaaaa taaaatatta aatttaccaa
     5341 ataaatcttc taaactccct aaatttagca aacaaaatcc agataataaa cctaaaaata
     5401 agcctagaat ttcactcttt gtgatcttgt gagttgattt tttgtttttt tgaaaaaata
     5461 tcgctatcat aaatatcaaa taagaaaaaa taggaatcat agtggttact aaaactcctc
     5521 ctttgcctgc caagccgtgc tttatagcga taaaaaatac aaaggcataa agcccattta
     5581 aaactcctgc tatcaatacc cattttaagg cagttttttc gattttaaga ggaattttta
     5641 agaagtttaa aacaaaaaat gaacccgata caacaaagaa aaaacgccaa aaggtaataa
     5701 tagaagtatc cgtataattt gctaaaatct tagatgttgg ccaagatgag ccccataaaa
     5761 acattgcgat aaaaagcaag atgaacaaat aactctcttt cattttttcc ttaactttta
     5821 ttaaatttta tctaaaagac tgaaaatatc ttgtttattt agggtaaaag tttcattttg
     5881 atcgttttta atcaaatact tttctccaag atttgaaact atgtataaat cttttacaaa
     5941 taaagttgca ttgttttctt taaaaatggg aatatgcttg gaatttaata attctttaac
     6001 ttcggtttta ttataaagtg cgaaactttg gttgtaattg cctattttac ttattctaat
     6061 aatataagga tttaaaagca caagtaaaaa aataaaagct ggtataaaag atatgggtat
     6121 aactttt
//
LOCUS       DAPIWV010000101         6104 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.102, whole genome shotgun sequence.
ACCESSION   DAPIWV010000101 DAPIWV010000000
VERSION     DAPIWV010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6104
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.102"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            38..946
                     /locus_tag="RJ272_001447"
     CDS             38..946
                     /locus_tag="RJ272_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HDV7382505.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGAKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            943..1206
                     /locus_tag="RJ272_001448"
     CDS             943..1206
                     /locus_tag="RJ272_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7382506.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1209..2375
                     /locus_tag="RJ272_001449"
     CDS             1209..2375
                     /locus_tag="RJ272_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7382507.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTKTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2387..3673
                     /locus_tag="RJ272_001450"
     CDS             2387..3673
                     /locus_tag="RJ272_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382508.1"
                     /translation="MKHANSIKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEIDAGIGEAAYALGAGIFFIGYAIFEVPSNLFLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGEISFYVLRFLLGLTEAGFSPGIILYLSYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYTPNIYFKNWQWMFLIEGGITVLVGIFCLFYLDSHPKDAKWLDIKEKDIL
                     LKHIEISNTKAKDYSIKDIFKSILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKHSWNLHAILFLLLASLSMIASTFVTNLAA
                     FLFFISLAAIGFIVIQPIFWNLPTQVLKGKGAAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLIVLALIAILGVLVLIHLKITLNLDKGE"
     gene            3674..4461
                     /locus_tag="RJ272_001451"
                     /pseudo
     CDS             3674..4461
                     /locus_tag="RJ272_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            4472..5728
                     /gene="fucP"
                     /locus_tag="RJ272_001452"
     CDS             4472..5728
                     /gene="fucP"
                     /locus_tag="RJ272_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HDV7382509.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIEAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICLSLYFVSGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGTGYL
                     AIAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5712..>6104
                     /locus_tag="RJ272_001453"
     CDS             5712..>6104
                     /locus_tag="RJ272_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7382510.1"
                     /translation="MQKIFDAHLHLWDLGKIPISWMKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEILFALEQKKLHNLLLCLADLKHKEKLNSFREVMHVSKKGA
                     KRLFEVDFEEKIEILKTFNIPFEACMKNE"
BASE COUNT         2053 a          732 c         1213 g         2106 t
ORIGIN      
        1 tatataaata tatttttgta tatacgaaat gaaaaaaatg ggaattttaa aaggaacttt
       61 accggcttta cttactccat ataaagatga tggaagtatc aatgaaaaag aatttattcg
      121 ctattgtgaa tttggtattt ctaaaggctt gaacggattg ttttgtaatg gaagtgcagg
      181 ggattctcaa gctttgagcg tggaagagca agttaagtta atgaaactca ccaaaaaggc
      241 tacaaaaaat aatataccta tcatcacggg tattacctcg acaatttatg aaaacacttt
      301 tattttggcg caaaaagctt atgaattagg tcttgatgcc ttattacttg ctatgcctta
      361 ttattataaa ttgagtgaag atgcactttt tgaatatgta aaatatttag cttctgaagt
      421 gaaacttccc ttatatgttt ataatatacc tctttttgca ccagcactaa gcttaaaatt
      481 tatagaaaag gtttcaaagc ttgataatgt tgtgggtata aaagatagta gcggagatgc
      541 tttgctttta aatcatattt tagatgtagt acctagtaat tttgatgttt ttgtaggaag
      601 agaagaattt tatgtaggtg cattattagc aggtgcaaaa ggttctatga ctagcatagg
      661 tggagttttt ccagaactta tgagcgaaat ttacaaatca atcaatgaaa aaaatatagg
      721 cagagctttg ctaatacaaa aaagtttatt aaaggccata agatttggta tgagcatagc
      781 ttttcctatg ggttttgctt tgcttttaaa ggccagagga tttgaatttg taaatgctag
      841 tattcatcct ttatcacctg ctacaaaaga agaattaaac actcgctttg atgaagcaaa
      901 agagcttatt aaaactatag aaaaagaaac aggtataaaa ctatgaaagg atatattata
      961 gtcaatgaaa aagacaatgt tgccacagct ttgcgtgact ttaaaaaagg cgaaaaagtg
     1021 gcaaatattg agcttttaaa tgatattgca agcggacata aatttgcact aaaggatata
     1081 aaaaaagatg aaattattat caaatacgca gaagctatag ctagtgcaag ttgcgatatt
     1141 agtacagggg aatgggtgca tatccataat actgcgggaa ttagaggtcg tggagataag
     1201 gaatgaaaat gaaaaagata atgggttata gaagggaaga tggaaaattt ggcttaagaa
     1261 ataaagtcat tatcatacca agtgtacatt gtgctaataa agtgtgtgaa aatatagcta
     1321 gaaaatgtaa tggagcagtt tatatcaacc atcagcatgg ttgctcccag cttgaatttg
     1381 atgctttaca aactagagat gttttaatag gtcatgggag caatgccaat gtttttggtg
     1441 ttttaattat agggcttggt tgtgaggtaa tacaagccaa agcagtagca gaaaaaatca
     1501 aagaagcaac gccttataaa aaggttgaat atttagtgat acaagaatgt ggtggtagta
     1561 aaaataccat tgaaaatggt atcaaaatag tcaatgaaat gcttgaaagt gctgcaaaat
     1621 tacaaaaaag tgaaggagat ttcagtgatt tgattttagg cacagaatgc ggtggaagtg
     1681 atagctatag cggacttagt gctaatcctg ctttaggaag tttgagtgat tttgtaatcg
     1741 atgagggtgg tgcggtaatt ttagcagaaa ctacagaact tataggttgt gaagccatac
     1801 tagctaagag agcaaaaaac gatgaaatag ctaaaaaggt atatgataag attttagctt
     1861 atgagaattt agtcaaatct tttcatgctg atattcgagg agcaaatcct agcccaggaa
     1921 atatggcagg cgggcttagt actatagagg aaaaatcttt aggctgtgtt tataaggcag
     1981 gaactaaaac cttaatggat gtgattgatt atgctaagcc tgtagtttct aaaggtttaa
     2041 cttttatgaa tacaccaggc aatgatatag aacaacttag tgctatggtt gcaggtggag
     2101 caaatatttg tgtttttact acaggtcgtg gcactccaac gggttctgct atcgtgccta
     2161 ctatcaaaat gagttctaat actttttgtt atgaaaatat gaatgatgct attgatatta
     2221 acgcaggaag cattatagat ggggtaaaaa caaaagaaga agtgcgtgat gagcttatag
     2281 aattaatcgt gcgaatttca gatggagaat tggtaaaagc cgagcttaac gagcaaaatg
     2341 atttttcagt ttggagactt gctacaactt gttaaagggt aaagtgatga aacatgcaaa
     2401 ttcaataaag ttagagttag tatgtaaaaa aatatcttgg cgtattttgc ctttgattgt
     2461 tttgatgttt tgtctttcta tgcttgatag gacaaatatt agctttgtga aatctcatat
     2521 agaaattgat gcaggcatcg gtgaggctgc ttatgctttg ggtgctggaa tattttttat
     2581 aggttatgcc atttttgaag tgccttcaaa tttatttttg cataaattag gagcaaaaat
     2641 ttggttaagt cgcataatga tcacttgggg acttgtaact atggcaatga tttttataca
     2701 aggagaaata agtttttatg tattaagatt tttattgggt ttaactgaag caggttttag
     2761 tccaggcatt attttatacc ttagttattt tttcccagct atatatcgat caaaagctta
     2821 tggaatttat caaatgggag ttccaattgc ttttgttttt ggttctttaa ttagcggttt
     2881 tatacttgat tatacaccaa atatatattt taaaaattgg caatggatgt ttttaataga
     2941 aggaggtatt accgttttag taggtatttt ttgtttattt tatcttgatt cacatccaaa
     3001 agatgcaaaa tggttagata taaaagaaaa agatattttg ctaaaacata ttgaaatttc
     3061 caatactaaa gctaaggatt attctataaa agatattttt aaaagtattt tggtgtggaa
     3121 atttgtattt gtttattttt gtattcaatt aagtgtttat ggagtgcttt tttatttacc
     3181 aagtaaaatt gcccaaatat tgcaaataaa tgtaggtttt gaagttggac ttttaaatgc
     3241 cataccttgg atttttgttt ttatcgcctt gccaatattt acctcattgg ctgataaaaa
     3301 acattcttgg aatttacatg cgattttatt tttactgcta gcaagtttga gcatgatagc
     3361 ttcaactttt gttacaaatt tggcggcatt tttatttttt attagcttgg ctgctatagg
     3421 ttttatagtc attcagccta tattttggaa tttgccaact caagttttaa aaggaaaagg
     3481 agccgcggct gctattgctc ttataggatc cttgggaaat ttaggaggtt ttgtagctcc
     3541 tactttaaaa acatatatag aaaatcattt tggagttgag tttggactta tagtgttagc
     3601 attgatagca attttaggtg tattggtatt aatacattta aaaataactt taaatttaga
     3661 taaaggagaa taaatggatt taaaaattaa aaataaggtt tgtattatta caggaggggc
     3721 taaaggtatt gggtatggta ttgctaaatt atgggcaagc gaaggcggaa ttcctgtaat
     3781 tttttcaaga tctatgccta aagagcacga taaagaatta aaaaaattat ctagtgagta
     3841 tgaattttat gaaattgatt taaaaaatta tgagcaaatt gaaaagcttg taaaaaaagt
     3901 tgctatcaaa catggtggaa tctatgctct tgtaaataat gcaggtacaa atgataattt
     3961 acatattgaa aatacaagta ctcaagattt gataaaatct tatgaaaata atctttttca
     4021 ttattatact atgaccaaag aatgtttgcc ttacattaaa aaagaacaag gcagtatttt
     4081 aaatatagtg agtaaaacag gcatcacagg acaaggaaga acttcagctt atgcttcggc
     4141 caaagcggct caaatgggtt ttactagaga atgggcttgt gcttttgcta aggataatgt
     4201 tagggtaaat gctatagctc ctgctgaagt tatgactcct ctttatgaaa aatggctgca
     4261 aaattttcct aatcctaaag agcaatatga aaaaatcgca aaagctatac ctttaggcca
     4321 tcgtttacta ccatagagga aattgcaaat acagcggttt ttacacttag tccccttgct
     4381 tcacatacta cagggcaaat tttaatgcca gatggaggtt atgtgcattt agatagagca
     4441 ttaaattggg atgaaaacta aggagtaaaa aatgactgat tctaaaaata taaaaatagc
     4501 tattgttttg gtaacttctc ttttcttttt atggggagta agctatggac ttattgatgt
     4561 gatgaataaa aattttcaaa atcatcttca tattagccag catgaaagtg gttttttaca
     4621 gtttgcttat tttggtgctt attttatcat agccttaccc gcaggttata tagccaatag
     4681 attttcttat aaaatgggaa tcatttttgg cttagctctt tatgccatag gagctttgct
     4741 tattatacct gctacaaatt tggcttcttt tcatttgttt ttgtttgcgt tttttatttt
     4801 agcttgtggt attggttctt tagaaactag tgcaaatccc tacatgacaa agcttggtga
     4861 tgaaaaaaat gcgagtttta gaatcaatgc tgcgcaaagt tttaatggtt tggggcaatt
     4921 tgtaggacct attataggcg gagctttatt tttatctatt actaaacaag aagagggtgc
     4981 gagtaaagag caaatcgagg ctgcattggt agctaatatg ggaaatgtcc agcttgttta
     5041 tataggaatt gctgtcattg ttattttgat tttaattgct tttgttgcaa ataagcttcc
     5101 agaaggaagt gcggtaagtg atgattataa gcaaaaagat gattctaagc ccatatatgt
     5161 ttttaaacac agacatttta acttagggct tttagcacag tttttgtata tagccaatca
     5221 agttgcagca ggagcttttt ttatcaatta tgttgtggaa cataatgaag gtttaaaaga
     5281 tgcgcaaggt gcttattatt tttctatagc tttggttgca tttatgttag gacgcattgt
     5341 ttctactcct ttgatgaaga taatcaaagg tgaaaaaatt ttaggatttt attctctaat
     5401 caatgtgctt atatgtctta gtttatattt tgttagcggg ttttttagca tagtgctttt
     5461 aatagcttta tttttcttta tgtctatttc ttttcctact atttttgcgg tagcaacaaa
     5521 aaatttacct ttaaatcaag taaaactagg cggatctttg cttgtgatga gtatagtagg
     5581 tggagcgatt atgcctataa ttataggctt tattaatgat cattatggta caggcactgg
     5641 gtatttagca atcgcacctt tgtttttata tgtggcttgg tatggcttta taggttcaaa
     5701 agtgagaaaa aatgcaaaag atttttgatg ctcatctgca cctttgggat ttgggaaaaa
     5761 tacctatttc atggatgaaa gacgatgaaa aattagagca aaattatgat ttttttagga
     5821 tgaaacaaga atataaagaa tttgaattta taggtgctat gtatgttgag gttaatagtg
     5881 atgatttgga aaaggaaatc ttgtttgctt tggaacaaaa aaagcttcat aatcttttgc
     5941 tttgtctagc agatttaaaa cataaagaaa aacttaattc ttttagagaa gtaatgcatg
     6001 taagcaaaaa aggagctaaa agattgtttg aagtagattt tgaagaaaaa atagaaattt
     6061 taaaaacttt taatatacct tttgaagctt gtatgaaaaa tgaa
//
LOCUS       DAPIWV010000102         6093 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.103, whole genome shotgun sequence.
ACCESSION   DAPIWV010000102 DAPIWV010000000
VERSION     DAPIWV010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6093
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.103"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..773)
                     /locus_tag="RJ272_001454"
     CDS             complement(<1..773)
                     /locus_tag="RJ272_001454"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HDV7382511.1"
                     /translation="MENLYALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVLILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSG"
     gene            complement(848..2845)
                     /locus_tag="RJ272_001455"
     CDS             complement(848..2845)
                     /locus_tag="RJ272_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HDV7382512.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            complement(3029..4375)
                     /locus_tag="RJ272_001456"
     CDS             complement(3029..4375)
                     /locus_tag="RJ272_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HDV7382513.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            4618..4959
                     /locus_tag="RJ272_001457"
     CDS             4618..4959
                     /locus_tag="RJ272_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HDV7382514.1"
                     /translation="MAYGSSNPEDLAKNFTKDLYSGDTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENTAKAKRMGGVKDIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRKWLVLLK"
     gene            4943..5548
                     /locus_tag="RJ272_001458"
     CDS             4943..5548
                     /locus_tag="RJ272_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382515.1"
                     /translation="MFYLNKILYFFLILFLLIGILGFFINSNPSNQIIKKPYLPFLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTILIHATTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQKIVAKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            5612..5959
                     /locus_tag="RJ272_001459"
     CDS             5612..5959
                     /locus_tag="RJ272_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382516.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
BASE COUNT         2406 a         1103 c          734 g         1850 t
ORIGIN      
        1 atcccactat aatacaaata aaagaaaaca aatcctaaaa taatacgata aattccaaaa
       61 gggataaagt cgaatttaga aataaatttt aagaaaaatt ttataactaa aactgcaaca
      121 ataaaagcag tgataaaacc tatgcctaaa ggaattaaag aatttgcatt gccaagaagc
      181 tcaggctctt tataaatgct ataagctgta gcgataatca tcgttggaat ggcaagcaaa
      241 aaactaaact cagcagccac ttttctatta aatcctaaca aaagcccacc aataatactt
      301 gctccactcc ttgaagtgcc aggaatcatg gctaaagatt gaaaaatacc tatacaaaaa
      361 gcttgtttaa agcttatttc ttctaaagaa ttgatacgat attgtttatt tttgtgcgca
      421 agttctataa gaataagcac aacaccacca aaaatgagca ttccaaccac aacccaacca
      481 ttaaataaag catttaagta ttttgccaca aaaagcccta taactccggt aggaaaaaat
      541 cccactgcaa gttttaacca aatatcaagc ccttgaaaca atttacgcca aaatacaaaa
      601 attaccgcca aaatagaacc aagctggatg ataatcaaaa agcttttcca aaactcatct
      661 atatcgatac ctaaaatagt cgtacctaaa atcatatgtc ctgttgaaga aacaggtaaa
      721 aactcagtca gaccttctat aattccaagt attaaagcat ataaattttc catatttaat
      781 ccttgaatga taattgcaaa agaaaaatta tatcagaatg gattaaatag ggttttaacc
      841 ccaaaaatta agcatctttt ttaacaatac gcttaatgaa atataataca actcccacaa
      901 aaaagataag tgcgaaaagc tcactatcat gaaaatttgc taaatttaaa gctaaaggat
      961 tttcactacc acccatactt actgaaaata cagtaattcc tgcgataatt accccaaaaa
     1021 tactttcacc cactataagc cctgaagcaa aaagcgtgcc tctttgctca caacttgcaa
     1081 gtttttcttc tttatgagaa ttttttgcat attttttagt caagtgttgc attacaatat
     1141 attttaaaat tccgcctata actaaaggta tatttacagc agggggaagg taaataccta
     1201 ttccaacggc taaaggcggc aaagacattt tctgtgttct tcttaaaatt ttatctataa
     1261 taatcattaa aattcctaca aatacaccaa aagccatata accccactct atattgtgat
     1321 gaaaaattcc ttgggcgata gtactcatta aatttgcttg cggtgctgct aaagctgatg
     1381 aagcatccat accttctctt ggcattgctc cgacaaaacc ataggcttga taaagcaaat
     1441 ttaaaacagg aactatagcc aaagcaccaa aaacacagcc tacaagtaaa gcaacttgtt
     1501 gtttccaagg agtagctccg actaaatgtc ctgtctttaa atcttgtaaa ttatcattcg
     1561 aaatagcagc tgtagctaaa ataacactag tagtaaaaat agctaatgct actgcaaatt
     1621 tagaaagcat aggatcttga aaaagttcca cacctaaaac caaaaaaaca atagaagaaa
     1681 taataacacc aataagtccg attccagaaa taggactaga agaagatcct acaagtcctg
     1741 ccatatatcc gcaagctgct gcaacaaaaa aacctattaa aacagaaact aaagttccaa
     1801 caaatgaaaa tagcatttga taataaatac ttaagttagc atcttcaaca aaactataaa
     1861 aagtaataaa taaacccaca accattaaaa caaaaagtat aaaaatactt tttaaagaaa
     1921 ggtctatatt tgttctttca tttttttctt gattagtaat tttaacattt ttaacaattt
     1981 ctttaatacc ttcaataacg ggttttaaaa gttctattaa agtccaaagc gctgctatag
     2041 caatagctcc tgttcctata agccttacct tagaactcca tacactagaa gctaaatcta
     2101 cggcattttt tgcactatcg aattcaaaat ttgaaagata gggagtaaaa ataccccaag
     2161 ctaaaaacat acctacaaaa agagctatag cacctgctaa accaactaaa taacctgccc
     2221 ctaaaagtgc caaagaatat cccatagaaa aaccaaaagc cattttattc caaataaaag
     2281 caaaattact ctcacttgca gcgagtttaa aaccattgct taacaaacta aaaatagcag
     2341 ctataaaaga gcctaatgct atttctttaa tgccttgttt tcctttttta ctactctgat
     2401 ctttattggc tacttttaaa atttcagctg cagctctacc ttcaggataa gcaagcttgc
     2461 tttcaaccac catagtcctt cttaatggta tagtaaaaag cactccaagt ccgccaccac
     2521 aaagacatat cataaaagtt tgccaaagtg gaaattcact ccaataccca cacataaaaa
     2581 gccctgggat aacaaaaata actgatgata aagttcctgc tgctgaagct tgagtttgaa
     2641 ccatattatt ttctaaaata tttgaagtct taaaaagact caaaaccgcc atggagatga
     2701 ccacagctgg aattgatgat gaaaaagtaa gtcccacttt taaccctaaa tatacatttg
     2761 aagctgtaaa aataatagtt aaaatacttc ccaaaaccaa accccttaag gtaagttctg
     2821 gtaaattttg ttttttgtac atcatttctc cgttttaaaa ttttactttc aacttaaaaa
     2881 atattcttat aagtttaaat ttataatttt tctctaaagc aaaataaaat aatacaaaaa
     2941 aacgcttata tttttataaa tttttgactc aaaaatatca taaaacaatg aaccaatcat
     3001 tgaaaaatca aaagttcttt tattttaatt atattatccc agctacctca gcaaaaatca
     3061 agcaaataat acttataccc catatataaa aaaagcttct tttgatatga tctttaatat
     3121 taacctctgc taaaccacaa cctagcaaag ttgcaggcac aacaggagaa ataaatgtcg
     3181 cacaatttct tgctatcacc atgataatag ctatagtcaa aggttcagcg ccaaaagcct
     3241 tagttacact caaaactata ggcatcactc cataaaaata agaatctgta caaaaaataa
     3301 ttgccattgg aacagccaat atccctacca tcaaaggaat ataagcgcct aaataatctg
     3361 gaacaaaatt taaaatcaaa acacccattt tctccataat accactttta tcaaatacgc
     3421 ctattaatat cccagcacca attaaagtaa tatacataag cattgcacca ccacttgcac
     3481 gatctaaaac ttttttagct gtttttaaat taggataatt aagcggtaaa attattgcaa
     3541 gtcctatcat aaagcaaata taactaggaa taataccgct aattaaaagc ccaataactc
     3601 caatagctac aagtaaattt aaccaaaacc atttttcatt atggtgttcg cttttttcta
     3661 tatttaaatt tattccagac aagttacctg cgcctgcacc tctttttatt tctatcttag
     3721 caatccaaat tgccaaaaga agggataata ccaaacctac aatctgaata ggtataatat
     3781 ggtgccaaag caaatttgca tccattccta tattagtagc cgctcttaaa gtaggaccac
     3841 cccaaggaat aacattcata acccccatag ccgaagtaat aatcaataac attgaagtct
     3901 ttcttatacc taaacgctca taaataggta ataatgcagg tattacaata agaaaagtag
     3961 aagcacctga accatctaaa tgcacagcag cagcaataaa aacagtaaga atgcaaactt
     4021 gatatacatt agctttcatt tttgataaaa atgcatttaa aattttagta aaaaaaccac
     4081 ttgcatttaa aacactaaaa aagagtatag aaaaaacaaa caaagctgcc gtatccgtta
     4141 cgcttttgac tccatcttta ataaaaacaa ccaatgtttt aatatcaaaa acacctcctt
     4201 taacccctaa agctacaccc acgccaaaac caagccgttc aagaataagt aaaatacaag
     4261 ctacactaat acttacactt ataaaagcta atgctggagt agtataatct tttagcaaaa
     4321 gccaaactat caatcctaac gagaaaaaac ccaataaagc taaaaaaatt tccatatcct
     4381 atccttttgt atcattttta ttcgataata aaataggata ttttaactcc aacttatatg
     4441 tgtttaaatt tatagctttt taaaaaaata tattttctaa tgtaaccatt ataaacaaga
     4501 ataaaaaaat aattttgaat tattttgcta taattatgaa tattttaatt tatactatca
     4561 aaagaaaaaa atgaaatttt ttaaactttc tttcttggct ttagttgcct ttttttagtg
     4621 gcttacggtt cttcaaatcc tgaagattta gctaaaaatt ttacaaaaga tctttacagt
     4681 ggtgatacta aatctgttat gagttacatt gatcttagcg aagctaaaag cgatgaagaa
     4741 aaaacatttg ttagtgataa aatcactcaa gttgttgctg aaaatacagc caaagcaaaa
     4801 agaatgggtg gtgttaaaga tattcaaatt gaagaaaaaa caatcaataa agattctgct
     4861 aaaatcagag ttttagtgtt atttaacaat gataataatc aaagcagcaa tgtttttctt
     4921 gctaaaaaag atagaaaatg gcttgtttta cttaaataaa attttatatt ttttcttaat
     4981 tttattttta ttgattggaa ttttgggttt ctttataaat tccaatcctt caaatcaaat
     5041 catcaaaaaa ccctatctac cttttcttga aataggtgat cttgtctttc gtgcaggaat
     5101 aggaagtgaa agttttttaa tagaaaattt aagtcaaagc ccttattctc atatcgctat
     5161 ggtagttaaa acttctccaa ctatactcat acatgctaca acagatgatg acaaaaatgc
     5221 taaaaaccaa gttatcttaa gctctatgga tgatttttta aaactgagtc ataaaattgc
     5281 tattaaaaga ttaaaatttg atgaaaaaac caaacaaaaa atagttgcta aagctttgga
     5341 acatttaggc agaaaattta tcataagtac agataaagat gctttttact gcactacttt
     5401 tttagaacaa tctattaact ccattacccc atttcatctt caatatactc taatcaaagc
     5461 tccttttaat gaaggtttat atctttttcc acaaactttt tttgaaaata atcaaagcgt
     5521 attaatttat gaaagtcaaa atttttaatt tcacattcac ttcacttaaa aattttataa
     5581 tgtcatcact ttacattaag gagaaataat tatgaaaaaa agtattttat tcgcatcagc
     5641 acttttagct agctcaatgc tttttgcaga tagtctaaaa cttgaaggta ctattgcaca
     5701 aatttatgat aacaacaaaa ccttgcttat tgactctatt tatggcggac aaatggctat
     5761 aaaagttcta ccaaataccg aaatagaaat ggatgattgt ggtatttttg gaacagataa
     5821 agatggaact tttaaagatt tacaggttgg aaatttttta gaaagtaaaa tttcttatgg
     5881 aacacctgct acaccaaata ctcaggctat tccagtagct agaaaaattg aaattcaatg
     5941 ttataaaaaa gcttattaat ataaatccct taacaaggga tttataaaaa tcattcttcg
     6001 gcaaactact tcattactct taaataaaaa tttaaactct tttttaacaa gcaatttata
     6061 aaataacact tatattttca tctaaggcaa ata
//
LOCUS       DAPIWV010000103         6027 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.104, whole genome shotgun sequence.
ACCESSION   DAPIWV010000103 DAPIWV010000000
VERSION     DAPIWV010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6027
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.104"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            343..2337
                     /locus_tag="RJ272_001460"
     CDS             343..2337
                     /locus_tag="RJ272_001460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382517.1"
                     /translation="MEALNQKNSLNIRLLSSNNILLHNQEFKLYEIAQGNKNEIKTIF
                     TTNRMGEAHLNASEIFSKEAQSFELILNQSSVYKNKPIYNHRFLLRSYEYGHWCEIKF
                     ERKADKGSINSIRLKSKEFTLENNEKIVRNFYTFGDIVEFEAIYEDAKIKEEQIKWGY
                     VFIQDKNTLDKLNKNQLTNDKKESSLFDEEILKDCFYIEKEEDKALLSSSIIYRHLEN
                     NKAYCGKHLSLQLPNPKDTQEQKTLLVFAYKEIPNYNASYLIRINDYPQITIDCTLAE
                     TLRAHTNKDEISRLGWGGVSYICQRLWHDNPSDAKELKDLTFRSSTSQDFIDTIPNET
                     MKTIVKEILPRVEMQQLKTDNTKSRDKARFYAELDWDSFYMKFPIMQELKGEYMNLKK
                     LFGEESDFQKQFEDFLNDTLLDIKNIKNTQEYTMALNIQAMKENKTKNAEVFKLYKKE
                     ETLPETHKAIKDLQKPSDIIDNSLYFQRFDIKNDVFLPHLDLSKFDAFSLQNSIQHEK
                     EVLDKFHSNPKYKQNFALYSIAGAFNILYIPSLIQITRVTRFYNYHSLYAACKKVRAF
                     IIDTVNFNNNGSDQPIGAWDYEKVGFDLYNSIMQYRNTKFHFKYTSPKSFLFPLYNSD
                     FLKTKQYFNLGLDFFLYSSTFLDMDFSHTQMQDTAFIVGK"
     gene            2339..2950
                     /locus_tag="RJ272_001461"
     CDS             2339..2950
                     /locus_tag="RJ272_001461"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382518.1"
                     /translation="MFFAGGDYEPFIYGLSLIAYYFLPLYCLTLLLYKYKPQYVNLTL
                     HIGASVLLYLAMWVIFVDTTIISLFEIFQMFLIPIILQIIHLTFILYAIIYTYFDMQK
                     ISFTKRLGRYIVSFFIGIGLLILSFVMMYAIGYYISSWCDRYYLKIDERNEAIRTITF
                     YVLVVVFPSIIALLLSYILYKNHKSFFTKILYRILSMIGKDKP"
     gene            3131..3574
                     /locus_tag="RJ272_001462"
     CDS             3131..3574
                     /locus_tag="RJ272_001462"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382519.1"
                     /translation="MTDGFGFLAYVFTLPVLILGGISYVCIVFLIRFQSFCGFVCSKS
                     FWIAWLFSYYLLFLIICITCEWELLIMYICGISLPLVYFLRKFFMQSHSNLALNEFSL
                     WIIPMSIFSLCIHSSLCVAIAWMLIFFQTNYDTQTLQSWLRFLFI"
     gene            3659..3909
                     /locus_tag="RJ272_001463"
                     /pseudo
     CDS             3659..3909
                     /locus_tag="RJ272_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910301.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3959..4966
                     /locus_tag="RJ272_001464"
                     /pseudo
     CDS             3959..4966
                     /locus_tag="RJ272_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902830.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
     gene            5461..5781
                     /locus_tag="RJ272_001465"
     CDS             5461..5781
                     /locus_tag="RJ272_001465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382520.1"
                     /translation="MHKIGNVAIVSLSSADKKGGSYTFTNKVSMQDFGENLYLDTEAN
                     GYEKQIKNSRENLYITNLKAYKEKEQQNTTDKIPYNETIFIRAYLNNEENFSSMRQLN
                     GHIV"
BASE COUNT         2324 a          825 c          907 g         1971 t
ORIGIN      
        1 aaaataaatt attaatagaa aagtctttaa cccaaacaat agaaaaagaa tttttcctta
       61 atattcatca aaatttatcc gcccacatac aagataatac atccttaaag tccaattcca
      121 tgcagacaaa ggtagaggaa caatattctt tagaatcaga taattcaact tttgactttc
      181 aaacagattg tgaagtaaaa caggcagtca aatcctccat caagtaggtg atactcaaat
      241 tgttactaag ggagattgtg ttataattaa agcaggtgga gttgaagtaa ttatagattc
      301 taatgggctt gtagttagag gtggagagct taggacagag taatggaagc acttaatcaa
      361 aaaaatagtt taaatattag gcttttaagt tctaataata ttcttctgca taatcaagaa
      421 tttaagcttt atgaaatagc acagggcaat aaaaatgaaa tcaagactat ttttacaacc
      481 aatagaatgg gggaagctca tttaaatgct agtgaaattt ttagtaaaga agcacaaagc
      541 tttgaattaa ttttaaacca atctagtgtt tataaaaaca aacccatcta taatcataga
      601 tttttattaa gaagttatga gtatgggcat tggtgtgaaa taaaatttga aagaaaggca
      661 gataaaggct ctataaactc tattaggcta aaatccaaag aatttacctt agaaaataat
      721 gaaaaaatag tgcgtaattt ctatactttt ggtgatatag tagaatttga agctatttat
      781 gaggatgcaa aaatcaaaga agagcaaatt aaatggggtt atgtttttat tcaggataaa
      841 aacaccttag ataagttaaa caaaaaccaa ttaactaatg acaaaaagga aagttcttta
      901 tttgatgaag aaattttaaa agattgtttt tatattgaaa aagaagaaga taaagcccta
      961 ttatcttctt ctatcattta tagacattta gaaaacaaca aagcttattg tggaaaacat
     1021 cttagtttgc aactaccaaa ccctaaagac acacaagagc aaaaaacact attagtcttt
     1081 gcttataaag aaatacccaa ttataatgcc tcttatctta taagaattaa tgattatcca
     1141 caaattacca ttgattgcac tctagcagaa acactaaggg cacatacaaa caaagatgaa
     1201 atctcaaggc ttggttgggg gggggtaagc tatatctgtc aaagattatg gcatgataat
     1261 ccaagtgatg ctaaagaatt aaaagattta acctttagaa gctctacttc acaagatttt
     1321 atagatacta tccctaatga aacaatgaaa acaatagtaa aggagatatt gcctagagta
     1381 gagatgcaac aattaaagac tgacaacaca aaatcaagag ataaagcaag attttatgcg
     1441 gaattagatt gggatagttt ttatatgaag tttcctataa tgcaagagct aaagggcgag
     1501 tatatgaatc tcaaaaagct ttttggagaa gaatctgatt ttcaaaaaca attcgaagat
     1561 tttcttaatg atactttact agatataaaa aacattaaaa atacacaaga atatacaatg
     1621 gcactcaata tccaagcaat gaaagagaat aagacgaaga atgcagaagt ctttaagcta
     1681 tataaaaaag aggaaacact cccagaaact cataaagcta taaaagactt acaaaaacca
     1741 tcagatatta tcgataatag tttatatttt caaaggtttg atataaaaaa tgatgtgttt
     1801 ttaccgcatt tagacttaag taaatttgat gcattttcat tgcaaaactc catacaacat
     1861 gaaaaagaag ttttagataa attccactct aacccaaaat acaagcagaa ttttgctcta
     1921 tactctatcg caggggcttt taatatctta tatataccaa gccttataca aatcacgaga
     1981 gttacaagat tctataatta ccattcttta tatgctgcgt gcaaaaaggt gcgtgctttt
     2041 atcattgata ctgtgaattt taataataat ggtagcgatc agcctattgg ggcatgggat
     2101 tatgagaagg taggatttga tttatataat tcgataatgc aataccgaaa tacaaaattt
     2161 cattttaaat atacctcacc aaaatcattc ttatttccct tatataattc agactttcta
     2221 aaaacaaaac agtattttaa tctaggctta gatttctttt tatacagctc tacatttttg
     2281 gatatggatt ttagtcatac gcaaatgcaa gatactgctt ttatagtggg gaagtaagat
     2341 gttttttgct ggtggtgatt atgagccttt tatatatggg cttagtctta ttgcatacta
     2401 ttttctaccc ctttattgtc tgacgctttt attgtataaa tataagcctc aatatgtgaa
     2461 tcttactcta catattggag cttcagtgtt gttatactta gctatgtggg taatatttgt
     2521 cgatacaact attatcagcc tttttgaaat ttttcaaatg tttttaatcc ccattatctt
     2581 gcaaattata catcttacct ttatactcta tgctattatc tatacttatt ttgatatgca
     2641 aaagatttca tttacaaaga gactaggcag atatatcgtt tcatttttta ttgggattgg
     2701 actacttatc ctttcttttg taatgatgta tgctattgga tattatatca gctcatggtg
     2761 tgatagatat tatcttaaaa tcgatgagag aaatgaggcg attcgcacta taacttttta
     2821 tgttcttgtt gtggtttttc ccagtataat tgcactactc cttagctata tcctctataa
     2881 aaatcataag tcatttttta ctaagattct atatagaatc ttatctatga taggcaagga
     2941 caaaccataa tgcaaaaact tatatatcaa aaccacgact accaacaaat acaaatccaa
     3001 caaacacaga aacatttcaa tcttggttgt gattttatag ttacaagcaa aggttttaaa
     3061 aatattaaga ttccaaataa tttggataca aagaatctat tgaggattat agtaaaagtg
     3121 aggcgagata atgactgatg gatttgggtt tttagcatat gtctttacat tgcctgtatt
     3181 gattcttggt ggtatatctt atgtatgtat agtatttttg ataagatttc aaagcttttg
     3241 tgggtttgta tgttcaaaaa gtttttggat tgcttggctt ttttcatatt atttattatt
     3301 tttgattatc tgcattactt gtgaatggga gttattaata atgtatatct gtggtatttc
     3361 tttacctttg gtatattttt taagaaaatt ttttatgcaa tcacattcaa atctagctct
     3421 aaacgaattt tcattatgga ttatcccaat gagtattttc tctctttgta ttcatagtag
     3481 cctgtgcgtt gctattgcat ggatgttaat attttttcaa acaaattatg atacccaaac
     3541 acttcaatct tggcttagat ttctttttat atagctctat atttttagat attgtgctag
     3601 aggagtagtt attatgtttg aagcgacaaa aaatacagag taaattaaag gagttcttat
     3661 gcaaaagttt ttaatagttt taaggatttg tgttacttta agtattaata ttaatgctca
     3721 atctccagaa gaagctaaac ctagctttaa ttgtgctaaa gcaaaaagca aggttgaaaa
     3781 gatgatttgt agtgataaaa gtggggagtt acaaaaactt gatagattat attctaaact
     3841 ctatttttca atactaaaga gtatccctaa agatacaaaa aggggcaaaa aacaagagaa
     3901 aaactgaaat attttaatca tcctgttatg agtaatagaa atatatttca atgctatttt
     3961 gcaaaataat ataaaaatct acaaccaaaa tcctgaaaat atcaaccaaa aacttaatga
     4021 aaatatggtt tttgagcttg cagataatga agcaaaagaa gttaaaaaaa tcatttcttt
     4081 tgagaaaata cataatctaa gaaaaaaact tcaaaaatgg aatgcaaact atcttacttc
     4141 ttttagtaag acagaattaa ccaatccaca agagtttatt cccttattgt ctatttatta
     4201 tcagcgtcca gcaagattta acccagagag tggactcatc ttgcttcaaa aagtccttaa
     4261 agataagaat agatttttag tgtggtttct gtgcgttatt atgctgatat acgacaattc
     4321 aaaaaccctt attattctcg cagaatccaa gaatctaact ttagagaagc caataccaag
     4381 caaggactga agctgccaga taaatacact tatctttctt ttatgcaaac ttataagaaa
     4441 tgcaaagaag ttgatgaaaa aaacagagta tctcttaaga gaatacaata catattatac
     4501 taaagacaaa cactattatt cttatgttgc taaagaagaa tttcagggta tagctgatat
     4561 tctcgctccc tatcttaatt acctaaacac cctcactcaa aaaaatttta gcttagataa
     4621 tatttattgt attgctaatt attgtgagaa tttaggcgct aataaattgg ataatgttgc
     4681 cttgcttaat aaaactttaa gacaaaagtt tgaaaaacta gaagcaaata caccccataa
     4741 tattcttatc ctctatccaa atcccactcc atctattata caaatagaac aacctaaaaa
     4801 tacttttatt actttactta taggagcaaa agcaaaaata gattgcacta aattgataga
     4861 agatcaatgc gagctaatgt atttaaaata tgatccaacg caagaagaac aacaaacaag
     4921 taatccgcaa gctttttctt gtagcaccca agaagaactt atttaaaaaa aagaaaatga
     4981 aatatacttt aaagcagtaa aaaacaatat atcatatttt attaataaaa acgatgggat
     5041 tttaaaagtt gctcttgctg gtaatgaaga aaatgctata gaattataca gttttgctaa
     5101 agaaaatcaa tttaaaattt tgcaagataa aacctcaaag atgctaaaaa tctatttaaa
     5161 actagaaaga tatagtagcg aagagatttt atcgcataga gggggaattt tgaattaaca
     5221 cttaataatc ttaagatttt agatgaaaat ggaaacaatt atgaaaccat cactaaagta
     5281 tttcttcata attgtgagaa tagaaggatt tatgaaagtt taaagttaga acatcaagaa
     5341 ggcatttata agagcagttt caagattgat ttaattttag atacaaactc ttcttttttt
     5401 aaaagggcta caaaatgtat tatagctaca aaaaccttag aaggctttag cacaagtcaa
     5461 atgcataaaa ttggaaatgt ggcaatagtc tctttaagtt ctgcagataa gaaaggtgga
     5521 agctatactt ttacaaataa ggtaagcatg caagattttg gagaaaatct ttatttagat
     5581 actgaggcaa atgggtatga aaaacaaata aaaaattcaa gagagaattt atatatcaca
     5641 aatttgaaag cttataaaga aaaagaacag caaaatacta ctgataaaat cccttacaat
     5701 gaaactattt ttattagagc ctacttaaat aatgaggaga atttttcttc gatgagacaa
     5761 ttaaatgggc atattgtata aaaaaagaag aggaattaga atgtaatcaa tctaaaatta
     5821 aaattttaga aaatcttcaa ggaaatgata taacctttaa tacttctatg ctttcacaag
     5881 atgataggaa taaactttat aatatgaatg aaaaatatca attaatctta tttgcttatt
     5941 ttagtgcacc tgcatttaaa acaacacaag gaataacgca tttagtgtta aaatgactaa
     6001 agatttaaac tatacaaaac aaagcca
//
LOCUS       DAPIWV010000104         6008 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.105, whole genome shotgun sequence.
ACCESSION   DAPIWV010000104 DAPIWV010000000
VERSION     DAPIWV010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6008
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.105"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            144..950
                     /locus_tag="RJ272_001466"
     CDS             144..950
                     /locus_tag="RJ272_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7382521.1"
                     /translation="MEVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKALHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTYDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSFRKFKSRTSKHRTNS"
     gene            865..2736
                     /locus_tag="RJ272_001467"
     CDS             865..2736
                     /locus_tag="RJ272_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7382522.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKKQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNIDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPNAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2740..4377)
                     /locus_tag="RJ272_001468"
     CDS             complement(2740..4377)
                     /locus_tag="RJ272_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7382523.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4381..5265)
                     /locus_tag="RJ272_001469"
     CDS             complement(4381..5265)
                     /locus_tag="RJ272_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HDV7382524.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5319..>6008)
                     /locus_tag="RJ272_001470"
     CDS             complement(5319..>6008)
                     /locus_tag="RJ272_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7382525.1"
                     /translation="TQKDFNLNKEPKNNNKENKDIKQNFFDQKLNFENLNKTQVVQNK
                     ENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKE
                     TLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNANAMN
                     LFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEK
                     VNLELVLAKYF"
BASE COUNT         2168 a          982 c          803 g         2055 t
ORIGIN      
        1 tgagttgtta agattcaata tataaatttg caatcaatcc attgtatttt aaagaatttt
       61 aaaaattcat ttgtaaaatt attatattat tttccaaaaa agacgattat aaagggtaat
      121 tattattaca gtaaaggaaa aatatggaag ttaaatggag tagagatttt agcattaaaa
      181 atatgcaatt agacaaacaa cacgaactaa tttttgaaat taccaatctt gcaaatgatt
      241 tagctctaaa cattcaagat aataatacac aacacaaaaa tgatttaaaa caaattcttg
      301 taaagctatt tcaatacatc aaaattcatt ttaaagatga agaaaaattt atggaaagca
      361 ttgattttcc tttgattgaa gaacataaaa aatctcatca aatattagta gaaaaaacta
      421 aagagctttt agagcattca gataatattg taaaaatgtc tcaagaactt tccatattaa
      481 ccaaagattg gattttagat cattttgcta atgaagattt atggatagct aattttacaa
      541 aaaaagccct acaccttcaa gaaatccatt ataccttaga acaatacata aaactaaaat
      601 caatcaaaca agacctaaga gctgaaaaaa cctatgatta tatttgcaat tgttctttgc
      661 gtatccatgc agttccacag actatacatc aagagcttgt tagcaaagaa aataccttaa
      721 agtgcgaaaa atgtgggcaa attttagttc atttggatta ttttgatttg aatcaaaatt
      781 tcgaaaaatt caatgctatt tttgaagatg cactacaaaa tcaccatttc acgactcaaa
      841 aaaatgatat gggggggggg atagatgaat tttcaagtaa aaaccttaga aactttcaat
      901 cctttcgaaa gtttaaatca cgaacaagca aacacagaac aaattcttga ttttagagtt
      961 atagatttta aacttctgtg ttctagtgta aaaccagcaa aaacaaaaac ttatgaaaga
     1021 aaggattttg acttatttta tgcagatgat ttttttgtaa aaaactacaa taccatagtg
     1081 caaaaatttc ttatagaaat ttatccaaaa aaacaaagtt ttccttttac agtcaaactt
     1141 agatccaact ccaacctaac ccatctaaaa gccagtatca accttacaga aaattttaaa
     1201 tattacccta atttaaaatt tgatattttg caaaatatct acaaaataat gatcaaacaa
     1261 aaatttttaa tcttaagact tgataaaaat ttatttgaca agattgatga ttttatctta
     1321 tcaatacaaa aaagtccatc tattaaagaa atagagcttg aaattgccaa aggtgtagat
     1381 aagattgaac ataaaagtga tgaaattatt tatcatagag atgttaacga agaatgtttt
     1441 gacgaaaata ttaactatga tgaaggaaac tactgtaaac ctattgaaaa aaatgagcta
     1501 ctttttgaat acatttatag aattcttgga aaagaaggac gaaatttaag aggagagata
     1561 cttcatttaa atccaatagc ctttcttgat aatcctttta tcataaaaga tgaaagcatt
     1621 tacacagaag aattagaaga tagaattaaa tattttagcg ccaattatgg atttttaaac
     1681 aaagatcata caggatattg tatcgcaaat aatttaaaat tatcacaaat agggcttaaa
     1741 acaaccggtt caatcaaaac aaatatcgat gaaaatataa acttagaaat cactaatttt
     1801 gatataagtg atgatgctat taaatcaggt attgtaaatg ttcaagcttc aaatataaaa
     1861 gtaaatggga atgttggagc aacaaaactt tatggaaaaa atatcagtat caaaggctta
     1921 actcatgcaa aaagcgaaat ttttgcacaa gatattttta ttacaacaca caaaggaact
     1981 ttgcaagctg acactgtata tataaaaaat ttagaaaatg ggacaattat agctaaaaat
     2041 gtatttgttg aaaactgcat gggtggaaaa atagaagcag aaaatattta tatttgcaat
     2101 ttactaacgg ataatacttt atatccaaga aaaaatctaa tcataacaaa caatataaaa
     2161 tttaaaaaca atatcgtagt ttcaccacta gtttctattg aaaacaactc agatacagaa
     2221 tgcgaaaatc ttaaaaatct aagccttaaa ataaaaagta agcttgatga caccataagc
     2281 aaaatgcaaa attactatga ttatctaatc aaaaatcaaa tcaaaatcat caaacttcaa
     2341 aagactaaaa atcctaacgc catagaaatg aaattttcaa atctttatca cgatatcata
     2401 aaaaaataca atcatcttag catttcgtat aaaaaattta taaaattaaa atatcaaatt
     2461 gatgcgaaat taaatttctt aaatgaaatg gtttacaatg taaaaatata cataaaagcc
     2521 gaaaatatcg gagaggataa ttttttaaaa ttttatccta acacaaacac caaccttgaa
     2581 ctaaaacatc atataaattt aaaagactat gaaaaggttt tatatcttga aaaaggacag
     2641 caagtaagtt atattaaatc aagccataat tatagcgaaa gcgacataga agaaattaaa
     2701 attatttttg aaaaattaga aaaagataat tcctaagaat tatcttttca tattaatggc
     2761 tttttgtatc atctgatcac ttgtagtgat actttttgag cttgcatcaa aggctttttg
     2821 agttacgata aggtttgaaa gctctgcgct taaatcaaca tttgattgtt ctaagaatcc
     2881 gcctttaaat ttagctgtat taacaacttg accatctttc ataataaaac ttgcatcacc
     2941 gctatttgcc gttgctgcaa aaatattatc tcccatagca actaatcctt gctcattgat
     3001 aaaattatat aaagcaagct ttccaactat ggcattttta ccattgctaa attgcgcaac
     3061 aatacttcca tcatcggata tattatattg ttcaaaaaac ccttcagcta caccatcttg
     3121 ttgtgtaact acattttttt cgacgccttg tttaatataa atcccactat aacccgaacc
     3181 aggcttgtta gcatcataag gagaacctaa atcaatatta attgttccac catttggatt
     3241 tgcaatgctt gtaatattgt tttgaagcaa agcaccattt ttatcaaaaa ccatatttcc
     3301 ttcagtcgga ttgcctacgg cattgccatt agaatcataa atttgtgcaa tagctttata
     3361 ttgtatatta tcgccttctt gcggtaaaac tctttcaagt gtaaccctta aagtgctttt
     3421 acttccatct gcattataaa taggggattc taaaatatct ttattggctt tttgttgctc
     3481 tgttgaaatt tgagctgtat caagcttgat gctattttca tccaatcctt ttaaatcaag
     3541 ctcgttactt ttaaaattta gattttcatc taaagtcgct tcaaagcttg tttttacgcc
     3601 attatcatca gtgaaattta aaataatcct atcacccgct ttagcactaa acacatcttc
     3661 tttgctaaca ctaccactaa ctacatattt tccatcttca gtttttgtaa tgttaaattt
     3721 actaggatca agatctactt taactacttc tgttgttgtg ttagtattta aacttccact
     3781 ccattttaca ttttgagtta cttgaggagg taaatacata ttcacaggta ctttaatagc
     3841 cccttgagaa gcggttgtgc ctatactgaa agaattattt gaatttacag taaaaccatt
     3901 atttaccgga gttcctgtgt taagataatc ccccataagc ccagcaactc tatcgctata
     3961 gttaatacca gtaaaagcag gattcattgt tcctaaaaca aaatttccat aagaatctac
     4021 caaatatcca ttggcatctc ttctaaatga tccatttcta gtatagtaag cattgccatc
     4081 agcccctaaa accccaaaaa atccttttcc ttgcaaagcc acatcaaatt cgccatcact
     4141 tgcaacagga gaaccctgtt cgaaaacaac ttgagaagat gctgcaccgc taccataacc
     4201 accttgagca gggttggttg attgggttgt tatggtagta taaaaaatat ctttaaattg
     4261 agcatcagag tatttaaagc ccgtggtatt gacatttgct atgttattag cagtgatatc
     4321 aataccaaag ctattgcttt ttactccaga aatcccatta taaaatgaat tcatcatggc
     4381 ttatgccttt tcctctttgt cgccatcttc tgtagatcca gacccagaag aatctccatc
     4441 gcttgaacca ccacttgagt ctccacttga accgcttcct ccagtagatg aagatgaacc
     4501 aagcttataa tctgttattt cttgtattgc atcaaaagga acttcttgtc cagccatttt
     4561 tgcataggca acaccatctt taaaaacaac accttcgata ggataagttc cgtaatttgc
     4621 agtgattttt tcaccatttt tattattata aaccatttta acagtgtact caccatcacc
     4681 tgcataaacc ccatcgttat ttcttcctgg ccactccata gtaaataaac cttgagaaat
     4741 agatttagca tcgctttttt cactgaaaac aagtttatta ttgctatcat aaatttctag
     4801 cgtaacaccg ttttcatcag aatcttcagg caaatacatt ttaagagcga taagctcatc
     4861 tgcacctgta agtttgattt tattatctga aacagttgcc attttaccaa tagcccctaa
     4921 agctgaagta ctcatacttg tactaaaaga atcagaaagc ttttgcatag tttcaaccat
     4981 tttttgcata gttgtattgg tattttgctg catttcaagt gcactaagct gtgaagtttg
     5041 agtaagcatt ttatcgctat ccataggatc tgttggatct tgatgttgaa gctctatcaa
     5101 aagaagtttt aaaaacgcat ccttatctaa ggtagcattt ggattgctca ctattcctga
     5161 gctactgctt gaatctgttc tagttgttcc actagtactt cctgaagaag tagtacctga
     5221 agttgtagca gtggtattta aattccaatc cgatgatgat atcattataa actccttttt
     5281 atttagtttt ttattattta agcaataagt gttccaattt aaaaatactt cgctaaaaca
     5341 agctctagat tgactttttc actttcattt tttccatcta aagcatcttt aaaaccatat
     5401 ccactacgat tttttccttg attttgattt tgctctcttt taccttgatc actaaaattc
     5461 atttcaagtc cagtaaatcc catatttaca agagaatttt taaactcggc ttgattttgg
     5521 ataaacaaat tcattgcatt ggcattggag ttgaaattga tatgaaggtt attacctctt
     5581 tgtatcaaag ttacctccac ttctccaaga ttattaggat ttagagtgat actaagttta
     5641 gtaataggcg ctttgtattg atccacagcc tcttttaaat cttgtgaaaa atactgcaaa
     5701 gtttctttag gagtgatatt gcgagcattg ttttgtgtta ctttatttaa atctttgact
     5761 aaagaattta actcatctaa gctattttta tctacatttt cactgtgcgt ttttgtttgc
     5821 tcttgagtaa aagtttcttt attagtagta ttattattaa aatttgcatt attctctttg
     5881 ttttgaacta cttgagtttt atttaaattt tcaaaattta atttttgatc aaagaaattt
     5941 tgttttatat ctttattttc tttgttgttg tttttaggct ctttatttag attaaaatct
     6001 ttttgtgt
//
LOCUS       DAPIWV010000105         5993 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.106, whole genome shotgun sequence.
ACCESSION   DAPIWV010000105 DAPIWV010000000
VERSION     DAPIWV010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5993
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.106"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            11..583
                     /gene="folE"
                     /locus_tag="RJ272_001471"
     CDS             11..583
                     /gene="folE"
                     /locus_tag="RJ272_001471"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDV7382526.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            583..1968
                     /gene="fliI"
                     /locus_tag="RJ272_001472"
     CDS             583..1968
                     /gene="fliI"
                     /locus_tag="RJ272_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HDV7382527.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(1971..3308)
                     /locus_tag="RJ272_001473"
     CDS             complement(1971..3308)
                     /locus_tag="RJ272_001473"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDV7382528.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(3310..4038)
                     /locus_tag="RJ272_001474"
     CDS             complement(3310..4038)
                     /locus_tag="RJ272_001474"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDV7382529.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(4101..5282)
                     /locus_tag="RJ272_001475"
     CDS             complement(4101..5282)
                     /locus_tag="RJ272_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7382530.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGAKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLDAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(5282..5965)
                     /locus_tag="RJ272_001476"
     CDS             complement(5282..5965)
                     /locus_tag="RJ272_001476"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382531.1"
                     /translation="MNKNLEIKNMKIHFDMINFSQFYTKFVLQNLNYEQFFNNPVQFY
                     ELNLFSDSQQEINFDYLVLDNNKINSFYSKNQVNFNEENSAVNLNIQGKSNEIDLKSL
                     LGQNLNFDKTKFNITINKFFNSNFNISHFIQKNLDLKIQNLILEKNKQNISLQGNLNI
                     NNSYQAKLQVISSDEPDEIFPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKING
                     SEFSNMDLN"
BASE COUNT         1982 a         1015 c          927 g         2069 t
ORIGIN      
        1 ggagaaaaat ttgcaaaaaa aatttgaaga ttgtgttaaa accatgcttg aaattatagg
       61 agaaaatcca aatcgtgaag ggcttattaa aacgccaaat cgtgttttta aagcttatga
      121 atttcttact agtggttata cgcaaaatgt caaagaaatt ttaaatgacg ctttatttga
      181 aagttctaat aatgaaatgg ttttagtgcg tgatatagaa ttttacagtc tttgcgaaca
      241 tcatcttttg cctttttttg ggcgtgctca tgtagcctat atccctaata aaaaagtagt
      301 aggtttaagc aaaattccac gccttgtaga agtgtttgca agaagacttc aaattcaaga
      361 acaacttact gaacaaatcg cacaagcttt aatggaaaat gtcgatgcaa aaggtgtggg
      421 tgtagtcata gaagcaagac atatgtgtgt tgaaatgcgt ggagtgcaaa aagctaattc
      481 caccactaca acttcagctt tacgtggaat tttcttaaaa aatgaaaaaa ccagagagga
      541 atttttttct ctcataaact ctgctaaaca ggtaagattt taatgaatct tgaaaaacta
      601 cgctccaaac ttggcaaaga aaatttaagt gctatttttg gagagattac aaaaatttct
      661 gctacaagta tagaaattcg tgggcttaaa acaggggttg gagatatagt gaagttagtt
      721 tctaatgaaa atgaaaattt aaacactcta gctatggttg tagaaatcaa agaacaattt
      781 agctatttaa gcccattttc ttttatagaa ggttttaaaa taggcgatcg tgcttttata
      841 agtgatgcag gtatgcaaat aggcgttagc gatgaacttt taggcagggt agtagatcct
      901 tttatgcgtc caaaagatgg taaaggagct atagaagcaa ccaaatatat gcctataatg
      961 cgtgcaccta ttgatgccat gaaaagaggg cttatagaag aagtttttcc cgtgggtgtt
     1021 aaaaccatag acgcgctttt aacttgtggt gtaggacaaa aacttggtat ttttgcagga
     1081 agtggggtag gaaaatccac tcttatggga atgatagtta aaaattccaa agctcctata
     1141 aaagtagtgg cactcatagg agaaaggggg cgtgaaattc ctgaatttat acaaaaaaat
     1201 ttaggcggaa agctcgatga tacagtgatt attgttgcta caagtgatga tagtgctttg
     1261 atgcgtaaat acggtgcttt ttgcgcaatg agtgtggcag aatactttaa agaacagggc
     1321 aaagatgtac tttttatcat ggatagtgta acgcgttttg ctatggcaca aagagaaatt
     1381 ggactagctc ttggagagcc tcctacaacc aaaggttatc caccaagtgt tttaagtctt
     1441 ttgcctcaac tcatggaaag aaccggtaaa gaagaaggta aaggcactat aacagccttt
     1501 tttaccgttt tagtggatgg tgatgatatg agcgatccaa tcgccgatca aagtcgttct
     1561 atcttagatg gacacattgt tttaagccgt gaattaacag actttggaat ttatcctcct
     1621 attaatatac aaaactctgc ttcaagggtg atgagtgaca ttataagtcc tgaacataaa
     1681 ctttgggcaa gaaaatttaa gcgtttaaac tcgcttttaa aagaaaatga agtattgctt
     1741 cgcatcggtg cttatcagaa aggaagtgat aaagaacttg atgaagctat ttctaaaaaa
     1801 gaatttatgc aaaaattctt aggacaaaat cctgaagaaa gcttcgaatt taatcaaact
     1861 ttagagcttt taagtcaaat tgatacacca aatactcctt tgccaccaac tcaaaatata
     1921 aatgtaggaa gtgcaagtgc aactttgcct aatcctaatt taaaataaaa ttatttaata
     1981 aaataatctc catcaaaact gattaaagaa tatttccttt catcgcctat gctttgagtt
     2041 agctcttcta tgcttaaaaa acttagcgta tcagcttcta catattcacg cacttcttca
     2101 gcatttttat ttgcactgat aagttcttca aaagttggag tatctatgcc ataagtatca
     2161 ggaaatttga tctcaggaca agctatggca agatggattt tgctcgctcc tgcagcacga
     2221 agcaaagaaa ttattttttt agaagtagtg ccacgcacca agctatcatc aatgactacg
     2281 atttctttgc cttctaaaac tttacgcata ggattaagtt ttaattttac ttttaaattt
     2341 ctaagctctt gagttggctc tataaaagtt cttcctacat aatgatttct tactattgcc
     2401 atttcaagag ggatttgtaa atattgcgca aaacctatag ctgcacttac tccactatct
     2461 ggcacaggca cgacaaagtc tgctttataa gcaaattttt tagctaaagc ttcgcccatt
     2521 tttttacgca cttcatacac gcttttgcct tctactatac tatcaggtct agcaaaataa
     2581 atgtattcaa aagcgcaaat tctaggagtt tgagaaaaaa gttctatgct ttcaaattta
     2641 tcatttccct gagtaaaaat aagcatttcc cctggtttaa catcacgaat aaattcagcc
     2701 tctataagat caaaagcaca agtttcacta gcaactatat agcctccatc ttttaaacgc
     2761 cctaaagaca aaggacgcac cccatgagga tctcttacaa cataaagttt atctttgctt
     2821 gctaaaacaa aacaataagc tcctatacat tcttttaaac tctcaataaa tctatctttt
     2881 agactttctt gcttacttct tgcgataaga tggacaacat tttctgtatc catattggtt
     2941 tgaaaaatag ccccatcttg aataagtctt gatcttacct cttctttatt gactaaattt
     3001 ccattatgcg ctaaagcaat atcacctaaa accgaagtag ctgctatggg ctgagcgtca
     3061 tttaaacttg aatttcctgc tgtagaatag cgattatgcc ctatagcgat ttcaccttct
     3121 aaagttttta gattatcagg attaaaaatt tgactcactt cacctttagc tttaatagtc
     3181 ttaatatttt taccattact cacactaatg ccacttgctt cttgcccacg gtgttgcata
     3241 gcaaaaagcg cataatacgc ataagtgcta gcattttttg aattgataac tcctacaact
     3301 gcacacattt taaattccta aaaaatcatt gattgaatac atttttgctt cttgcttgct
     3361 aagccaaata gcgattttaa tcgcaccttt agcaaaagtc gcccttgaag tagcggtatg
     3421 attaagttct aaaaactcac catcttcgta aaaacctacc gtatggcgtc ctactatatc
     3481 gccacccctt aaactcatca cggcaatctc atctttactt ctttcaccta taatgccatc
     3541 tcttccactt actcttactt tttcaagttc taaatttcta gcttttgcta cactttgagc
     3601 taaagtcata gctgtaccac ttggggcatc ttttttatgg cgatgatgca tttctaaaat
     3661 ttctatatca aaatttctta gcatttgact ggctttacta gcaagatagt ttaaaaccgc
     3721 aacacctaaa gacatattgg tcgcataaaa aatcggcatc acttcactag cactttgcat
     3781 caaatgtaaa attttctcat caagccctgt tgtacctatt accaaaggtt taggcatagt
     3841 tcttgcataa tttaaaagct catgagttcc acttggggaa gaaaaatcaa taatcacatc
     3901 gcttttttca aaaagctctc ctaaatttcc acccttatca taaagtatcg aaattcgtgc
     3961 ttgtgtttcg ctttttaaac attcttcaat ctgttttccc attcgtcctt tagcgccata
     4021 aattcctatt ttaatcatct ttttccttga aaataaaata ttgattttag catttatttt
     4081 gtaaatttta aataataaaa ttaagcttta tggtttttta atttatataa attatctaac
     4141 aattttgctt cttctcctaa gcccttgcta tgataaaatt ttaaattttt actaagatat
     4201 ttttgctcta cccagccacc aaaatcatgt ggataaagat agttttgttt ttcttgatga
     4261 ttgttgttaa gataattagg tatttctaaa gcttcattat tttttacata gtttaaagct
     4321 tcattgatag ctttgtagct tgcattggat ttgattgtgc ttgctaaata aactacgcat
     4381 tgggctagga taattcttgc ttcaggataa cctatatttt taacagcatc tagagtcgaa
     4441 actgctaaat ttaaagcatt tggatcggca tttccgacat cttcacttga aaaaatcacc
     4501 aaacgcctag cgataaaatc cgcactttct cctgcatcaa taagtcttgc aagataataa
     4561 atagctgcat caacgtcact tccgcgtaaa ctttttatca ttgcacttgc taaaatataa
     4621 tgtgtatctt ttgagctaac accttcacta tttatggtgt tgcgaagttt tttaagattt
     4681 tcaagactga tatgtttttc atctaaaacc aagacaaatt caagcaaatt tagcatagct
     4741 cttgcatcag cacttttaag tagaaaatct ttagcttctt tatcaatact aaatttcatt
     4801 ttttcttgta cacgcaagag taaagtttca agttcctttg cccctaaaga tttaaattca
     4861 aaaagcatgg aacgacttct tataccagaa cttaaaacaa aatagggatt ttcagtgctt
     4921 gcaccaatta aaattaaacg gtaattttcc ataggaatta aaagcatttc ttgttgggtt
     4981 ttgctaaggc ggtgaatttc atcaataaaa attaaaggct tataaagact atttttataa
     5041 ttatctaaaa tttttcttag ttcttcgagt ttaaaatttc ctccatcaaa ttcataaaaa
     5101 tctaagccaa attcttttgc tacaactcta gcaaaagttg tttttccaga acctgctgtt
     5161 ccaaaaaaaa tactatgagg aagtttttgt aaagcagtaa attttttgaa aatttctata
     5221 agctcatatt gtcctaaaat atcatcaaaa ttttcagggc gaaaggtcaa agctaggctc
     5281 attaatttaa atccatattt gaaaattcac taccattaat ttttagttga ggattggcca
     5341 agctatcata agataaattt agaaaaaagt tattattttc ttttaaaaaa tattgattta
     5401 aacctccata atcctttgtc caaggaaaaa tttcatcagg ctcgtctgaa ctgataactt
     5461 gtaattttgc ttgataagag ttgttaatat ttaaattgcc ttgtaaactg atattttgtt
     5521 tatttttttc aaggattaaa ttttgtattt ttagatcaag atttttttga ataaaatgag
     5581 agatattgaa atttgaatta aaaaatttgt ttatggttat attaaatttt gttttgtcaa
     5641 aattcaaatt ctgacccaat aaagatttaa gatcaatttc attggatttt ccttgtatgt
     5701 ttaagtttac tgctgaattt tcttcattaa aatttacttg gtttttgctg taaaaagaat
     5761 tgattttatt gttatctagc acaagataat caaagttgat ctcttgttgg ctatcgctaa
     5821 ataaatttaa ctcataaaat tgtacaggat tgttaaaaaa ttgttcgtaa tttaaatttt
     5881 gtaatacaaa tttagtataa aattgagaaa aattaatcat atcaaaatgt attttcatgt
     5941 ttttaatttc taaattttta ttcattaaaa cttcaatata tccgccgttt atg
//
LOCUS       DAPIWV010000106         5902 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.107, whole genome shotgun sequence.
ACCESSION   DAPIWV010000106 DAPIWV010000000
VERSION     DAPIWV010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5902
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.107"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            29..1405
                     /locus_tag="RJ272_001477"
     CDS             29..1405
                     /locus_tag="RJ272_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDV7382532.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVVACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            1468..2070
                     /locus_tag="RJ272_001478"
     CDS             1468..2070
                     /locus_tag="RJ272_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382533.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEVEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKIQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            2061..2267
                     /locus_tag="RJ272_001479"
     CDS             2061..2267
                     /locus_tag="RJ272_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382534.1"
                     /translation="MGIILRILSLIAGFVTIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            2346..3073
                     /locus_tag="RJ272_001480"
                     /pseudo
     CDS             2346..3073
                     /locus_tag="RJ272_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000323697.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
     gene            3092..4558
                     /locus_tag="RJ272_001481"
     CDS             3092..4558
                     /locus_tag="RJ272_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382535.1"
                     /translation="MENICQFIIENIDKNSLNTKKIKLVFNMQEQEITTISKIFKVSS
                     EHIIAFYDTSTSFNYFSKTTGICFTGKEVIFKRKEDEVLMKINYEDFKEANKSLPEKT
                     TTLQDIKFPISFHNLGTSYLSFDDFKKKNYIEENDELIINFLHILTSKNNIESFKNES
                     MFPQALEKTNESIKENYIKVIIKIILDQYGFLDEKRSIKIFALMNKINVASETRYKIQ
                     DFLHNKHSSFEDLLNIIKQESRFMQFKYILISLIKDLIDIDFEDNKIYNFLYENKDIF
                     KIKDFKEIYWIKEIIKKEYQIILDDNKEIQQIFNFISETATKNNISLNGLYLSGMTIG
                     MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILKENQKTITQIIDIIN
                     NLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPETLSLITINNHLKEDDIQ
                     FIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
     gene            4884..>5902
                     /locus_tag="RJ272_001482"
     CDS             4884..>5902
                     /locus_tag="RJ272_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382536.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSAIAFLENKFK
                     INYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIFGLFVSIVNQFTNTSTFVSNG
                     KIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCGSSGGKERGAGIPMPFYNLFL
                     LCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPVMINEMLIRFMYIIKAKFYHK
                     KEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKSKNPITNPVVFLSEINLINVI
                     RFSTL"
BASE COUNT         2366 a          731 c          928 g         1877 t
ORIGIN      
        1 aattaattta tacttataag gaaatttagt gcagcaagag tattatgact tggatttaga
       61 acgagctatt ttaagcagtt gtatcatgag tgaagaagct tatgctagta tagcaggtga
      121 tattagccca aaagatttta gtcttaaagc tcaccaagat atttttaaag cggttgtagc
      181 ttgtagtaat aacaaagagc ccatttctgt aagtttttta agaaaacata aaaaaataga
      241 tgagcaaatt ttagcagaaa ttcttgccac tccttctatg atagatttgc ctgcttatgt
      301 aaatgaactt cacgaaaagt ccgtaaaaag acaactcttg agttttgcac atcttttgcc
      361 aactcgtatc aatgaagatc gtgctgtaag tgaaatcgca gatgaaattg gtaaagaaat
      421 ttttagcatt acaaatcgtg tgaattctag agatattaaa gatgttgata tggtaatatc
      481 agaacttttt gaagaattta aaaagcaaaa aactttagaa aataaaggta ttatagggct
      541 tgatacaggt tttgaaggtc taaataaaat gacaaaaggt tttaaagggg gtgaacttat
      601 aataatcgct gcgcgcccag gtatgggaaa gacaactctt tgtttaaatt tcattgacaa
      661 gattttaaga caaaaaaaag gcgtggcttt gttttctctt gaaatgcctg caactcaaat
      721 catgcaaaga atgctatctt ccaaaacttc cattcctttg caaaaaattt taactgcaga
      781 tttaaatgat gatgaatggg agcgtttagg agatgcttgt aatgattata gtcaaaagaa
      841 attatatatt tacgatagtg gttatgcaac tattgctgat gtaagggcta ttttaaggcg
      901 tttaaaatct caagatgaaa gtataggact ttgtgtgatt gactatatag ggcttatgat
      961 gagtaattca aattttaatg atagacattt gcaagttagt gaaatttcaa gaggacttaa
     1021 gcttttggct agggagcttg atatgcctat tatcgcactt tcacaactta atcgtggctt
     1081 agagcaaagg gcaaataagc gtcctttgat gagtgatttg cgagaaagtg gagctataga
     1141 gcaagatgcg gatgctattt tgtttgtata tcgcgatgag gtttatagag aacaagaaga
     1201 aaaagaaaga gagaataaag ctaaagctga aggcaaagct tatcaaaggc tttttatacc
     1261 aaatcctatg caagaaaatg ctgaaattat tgttggaaaa aatagaaatg gacctgttgg
     1321 aactatagaa gttgtatttt taaaagaaaa atcttgtttt gtagataaac ctataggcta
     1381 tgaaactact gaatttacag gctagcttta ataaaataag tttttaatat tttaaagtta
     1441 ttttttacga cacaacctgt cgcaagggtg ttttatactt tctttgttat tttaaaacaa
     1501 ggagagaaaa tgttaaaaca aatcgcattt ggtagtatag ctcttacagc tacaggatat
     1561 ggcataaaaa aattatacga aaaattatcc aagccagaaa gaaaatttga tacacatgct
     1621 attgttccaa gctgtaagga tgtaatcaac accgaagaat ataaactcaa aagagagctt
     1681 gaagtcgaac aaaagaaaaa tcaaattcaa gaatttcttt gtgaatgcat ggagtgttat
     1741 agcggctttt caaaatattt taattctaag gaatttttag aatttgagca aaattttacc
     1801 tctaaaaata atcacaaaac agaatttctt ttgtcgtctt ataaagatca aatgataaaa
     1861 gtgatcgact atgctaaaaa atttaaatgc ttgagtgctt ttttggaaac acaaagcgaa
     1921 aaaaatgact tagcggttgt aaaaatgata agtgaaagta tggagagaaa aatacagaga
     1981 ttttatctgc aaacaaaatt tcaaactttt cctcagtata tttttccttc tgtgtggagt
     2041 tctcctatgt gggataaaca atgggaataa tacttagaat tttaagcctt atagctggct
     2101 ttgttaccat agtgttgatg tgtggtttgt attttatagc gtttatggtt tttgttggca
     2161 tagcgatact tatttttctt tctatgcaac cttatcctta taatataata ttttgtgcta
     2221 tatatttaat cacaatttta gcgctagtgc tatggcgtaa aacttaaaaa tttcacttcc
     2281 cccttgactg ggggggggga tttgataaaa tacaaagtta aaaattttaa aaacaaggag
     2341 aaaatatggc ctacagatat gataaagatt tagaattctt aaaagaatta agcagtccag
     2401 aactcgatga gcttgtaaaa attttaaccc atgataaaga cgggaaagtt cgttttactg
     2461 aagagttaac caataatgat ctttataaaa aacattatcc agatcataaa gaatatatcg
     2521 aactcatttt agaagaattt caaaaatttg gaggaaatag tattcttaat atatttcgag
     2581 gtggtggagt tttataatga aattctacgc gatgttgtaa aaaaatttga tgtaaaattt
     2641 gatgaaaatg aaagtacaaa ctccatagaa acatcacttt tatgcaaatt aatagaagaa
     2701 gagttaaaaa attctcaaga tgaaaataca ttaagagaac ttgtaaatat tttcgaactt
     2761 ggcatttcta atattaataa acaaacagtt gtaatgggat tgcaatctct cattaaaata
     2821 ggtggattta aaagctatca aattgcagta atagttgcaa atcaagttat gaaagtttta
     2881 ctaggaagag gtttatctct tgcggcaaat gcaacactta caagagcttt aagtcttttt
     2941 tctggtccgg taggttggac aattatgacc acatggactg cattggattt agctagccca
     3001 gcctataggg tttactatac cagcagtact tcaaattata attttaagac taaaacacaa
     3061 tacaaaaaac taaacacaag gaaatgcatt aatggaaaat atttgccaat ttatcataga
     3121 aaatattgat aaaaattcat taaatacaaa aaaaataaaa cttgttttca atatgcaaga
     3181 gcaagaaatt acaacaattt cgaagatatt taaggtatct tcggaacaca ttattgcttt
     3241 ttatgatacc tcaacatcct ttaattattt tagcaaaact accggaatat gttttactgg
     3301 caaagaagtt atctttaaaa gaaaagaaga tgaagtttta atgaaaatca actatgaaga
     3361 tttcaaagag gcaaataaat ccttacctga aaaaacaaca actcttcaag acatcaaatt
     3421 tcccatatct tttcataatc ttggaacatc ttatctttca tttgatgatt tcaaaaagaa
     3481 aaactacata gaagaaaatg atgagcttat aataaatttt ttacacatct taacttcaaa
     3541 aaataacata gaaagtttta aaaatgaaag tatgtttcca caagccttag aaaaaacaaa
     3601 cgaaagtatt aaagaaaact atataaaagt tatcattaaa ataatattag atcaatacgg
     3661 ttttttagat gaaaaaagat caatcaaaat ttttgctcta atgaataaaa ttaatgttgc
     3721 ttcagaaaca aggtataaaa tacaagattt tttacataat aaacattcta gttttgaaga
     3781 tttgctaaac atcataaaac aagaatctag atttatgcaa ttcaaatata ttttaatttc
     3841 actaataaaa gacttaattg atatagattt tgaagataat aaaatttata attttttgta
     3901 tgaaaacaaa gacattttta aaatcaaaga ctttaaagaa atctattgga taaaagaaat
     3961 cattaaaaaa gaatatcaaa taatattaga cgataataaa gaaattcagc aaatttttaa
     4021 ctttatatcc gaaacagcta caaaaaataa tatatcgtta aacggtttat atctttcagg
     4081 aatgacaatt ggcatgtctg tatcaattat ggagttacta ggatttgggg aattaataaa
     4141 attaccacta attgattctt caaaaaaata tcacaataaa aacaaacaac aattacgtct
     4201 ttttattatt caagaaattc tcaaagaaaa tcaaaaaaca attacccaaa ttattgatat
     4261 catcaataat ttaattgagc aatgtaatac aaatacacaa aatttacaag aattaataaa
     4321 attattaaaa ttggcttcaa aaaataatga aacttttaaa gaaagggaaa aacttttata
     4381 ttgcccagaa acgctttcat tgataacaat aaataatcat ctaaaagaag atgatattca
     4441 atttatagaa caatactata cctataatca aaatactcat gagtatgagc gcaatgacaa
     4501 tctttcttcg tcagatttag aaaaactttc aaattttttt aaattaaaaa atctataagg
     4561 ataattttat ggataaaata caagaaaaca ccaaaataga aaaggctata ttagccgaaa
     4621 aacaacaaat ctttttaata caaaataaat tatccgaaat tgaaaaaaat atcaaagaac
     4681 aatgtttaac catagaacag attcaaaata gtatcacaga aaaaaatcaa aatttgagca
     4741 atatagaata taaggaaaat caatcaatcg attcattgga aaattttttt aacacttata
     4801 gcaattggga aacatattgt caagaaattg aaaaatattt aaacttaaaa aaaataaact
     4861 caaatgaaga ttctttaaaa tttttgatca cttattcaaa tttatcagat gttaaaaaaa
     4921 gaattgaaga tgaatttacc catagaaatg cagagtgcga taagtatgat tatttaatag
     4981 caataacatg tggagcaata gctggcatta tggacatttt tttagttgga aatcctaaag
     5041 atagctatct aggaaaaaag gtagataaga cggtagaaaa aatgactcaa aaatttgcac
     5101 aattatgtgg ttgggataag caaaaagcat tagacaaaaa caaagattta actaaaagtg
     5161 ctatagcgtt tttggaaaac aaatttaaaa ttaattatga tcaaactact acaaacggaa
     5221 gaaatggaac aaatggaaaa gtagataatt taagtatgaa aaatcatcat ttaaaaagca
     5281 taggtcactc tccagatatt ttcgggttat ttgtatctat agtaaatcaa tttaccaata
     5341 cttcaacttt tgttagcaac ggaaaaatca taaccataga tacaaatact tttgaattac
     5401 aagggggaaa ttttattgct aaaatatttt gtggattttt taattggttt ggacatttag
     5461 catctgattg gtgtggatct agtggaggaa aggaaagagg tgcaggcatt cctatgcctt
     5521 tttataattt atttttactt tgtgattttg gaaattttgg acaacataga caaacactag
     5581 cacaaattgc aacccaagtt tttgaacaag gatatgatct taggcatgga gttactatgt
     5641 ctattcctgt tatgattaat gaaatgctaa ttcgttttat gtatataata aaagctaaat
     5701 tttaccacaa aaaagaatgg aaagaatgta taccaaaaga tgacatacct gaattaaata
     5761 aaatgctttt aataggatct ggtacttttt tattaattga tactggtggt gcatggataa
     5821 aaagtaaaaa tcctataaca aatccggtag ttttcctttc tgaaatcaat ttaattaatg
     5881 ttataagatt tagcacttta at
//
LOCUS       DAPIWV010000107         5860 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.108, whole genome shotgun sequence.
ACCESSION   DAPIWV010000107 DAPIWV010000000
VERSION     DAPIWV010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5860
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.108"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            89..2179
                     /gene="cfrA"
                     /locus_tag="RJ272_001483"
     CDS             89..2179
                     /gene="cfrA"
                     /locus_tag="RJ272_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HDV7382537.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSLLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRVSYLANNYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNDGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQKYNKDNMIPGIGICGVDRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNCI
                     EEGRRIYISINGSF"
     gene            2480..3274
                     /locus_tag="RJ272_001484"
     CDS             2480..3274
                     /locus_tag="RJ272_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HDV7382538.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3271..3798
                     /gene="grpE"
                     /locus_tag="RJ272_001485"
     CDS             3271..3798
                     /gene="grpE"
                     /locus_tag="RJ272_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDV7382539.1"
                     /translation="MSEQKQEIENENAQNSENLQDDLQDNEKNETNELQKELEELKDK
                     YMRANAEFENIKKRIEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKIK
                     EGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGYK
                     IADRVIRPTKVSVAK"
     gene            3820..5691
                     /gene="dnaK"
                     /locus_tag="RJ272_001486"
     CDS             3820..5691
                     /gene="dnaK"
                     /locus_tag="RJ272_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDV7382540.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
BASE COUNT         2184 a          766 c         1138 g         1772 t
ORIGIN      
        1 atcacaattg atacaaaatt tatcttaaat taataattat tatcataata ttttgatttc
       61 taaatcaata tttaacaaaa ggagaaaaat gaaaaaaata tgtctatcag tttgcgccat
      121 tggtctctta agctccaatg ccatatcgca aaatgtagaa ctagatagct caatcgttag
      181 tgcttctggc tttactcaag atattaaaga agctcctgct actatcaatg ttatcagtaa
      241 aaaagaatta caaagtaagc cttatagaga tgttgcagag gctatcgcag atatcccagg
      301 cgttgattta tatgctagca agggaaaaac aggttcttat aatattacta tgagaggtat
      361 tacgggatat actttggttt tgattgatgg acgccgtcag ggtattggtg gggaagttgg
      421 tcctaatggc tttaatgaaa tttcaaattc tttattgcct ccaatttcta gcatagaaag
      481 aatagaagtt ataaaaggtc ctatgagtac tttatatggc tccgaagctt taggcggggt
      541 ggtaaatatc attaccaaaa aagtaagtga taaatgggaa acttctgtaa gcttggacgc
      601 tcttttaaat gaaaataaag attggggcaa tacttatgga acaagtattt attctagtgg
      661 tcctttgatg aatgacaaat tgggtctaac acttcgattt agagaatttt acagacagca
      721 atctaatgtt gaatttacaa atggaagtgg acaaagagtt caaggagatc aagctcaaag
      781 tcccacaaaa gcaaataatt ttaatatagg aacaagagtc agttatttgg ctaataatta
      841 taataccttt atatttgata tagatttttc aagaaatcat tacgataaca aacagggtca
      901 attaggaacc atcacaagcc caggtagtgc gccaggtagc ttaacgggtg gttatgcaga
      961 tattatggaa gttgataaat ttgtgactta tttaagccat gagggtgttt atgaaaactt
     1021 ttctatcact tctggtttgc aatacaatag ggtaagcaat gatggccgtg aagtcgtagg
     1081 gcaagctaca cagccgtttt tgggagaaaa tagagatata gtcgcagaag atattatctt
     1141 agatactaag tctgtcattc ctttgggaca aagtcatatt ttaagcgcag gtggtgaata
     1201 taggcttgaa aaaatgcaag ataaaatagc taatccgacc aattttgatc agtatttatt
     1261 ggcaatattt gcagaggatg agtacagcat aaaagataac ttaagattga cttttggagc
     1321 aagatacaat catcatgaaa tttttggaaa taatatttcg ccaagagctt atctagttta
     1381 taatcctact gatgaactta ctttaaaagg cggtgtatct acgggtttta ggactcctta
     1441 tgcaaatcgt ttgataaatg gagcttataa ttatagtggt caaggtagat ttcctatata
     1501 tggaaatcct gatttaaaag aagagacatc tttaaattat gaaatagcag ctatttacaa
     1561 taatgatttg ttttatgttt ctgcgacagg ttttttaaca aattttaaag ataaaatttc
     1621 aacccaaaaa tataataaag acaatatgat tccaggaatt ggtatttgtg gtgttgatag
     1681 atgttttaag gcaatcaacc atggcaaggt cgaatataaa ggcatagagc ttggagcagg
     1741 gataagccct cttgataatt taaatgtaaa ttttgcttat acttatcttg atagtgaggt
     1801 taaagaagca caagataaaa gtgtgatagg taaacctgaa caggatagtt taaaacacaa
     1861 tatcatgtta aaaactgaat acagcttcta taataaaatt accccttgga taaaaggcga
     1921 atggcaaata gatcgctata tgggtgatac taatataaat agggaatatt ataaggatat
     1981 ctttttagct tctatgggtg tgcgttatga tatcaataag caatggagta tcaatgcagc
     2041 tatttataat ctttttaaca aaagttttac agatggttgg gaatcttatc aaaatagcgg
     2101 tgctcctact tgggtcaata cttacaattg tatagaagaa ggaagaagaa tatatatttc
     2161 cattaatggt agtttttaag ctttgataga aaagccaaag agcttataaa ggcttctttg
     2221 gttttttgtt tatagcatct tgtgctttta aaaaagttaa attatcgaat ctatttaaaa
     2281 tttcttatct aattatcacc ctgtttacca atcttgaaat atatcctatc cttataaaaa
     2341 agtaactaat aaaactttag ttatatagac taaataaaat taagtatatt tttttatatt
     2401 tatacttgac aaaataacac tcaatgttgt ataatatatc tagcaatcaa aaaatagagt
     2461 gctagcttta aaggaaaaca tgatgaaaag tcgagataaa aaggatttga ttttagagtc
     2521 tattatccaa acttatcttt tggataatgc acctattggt tctaatgaat taaattcaaa
     2581 cctttgtata cctgcttcga ctatacgcgt ttatcttaaa agacttagcg atgagggttt
     2641 gatcactcag cttcatataa gtagtggtag aattcctact attttaacga tgcaaaatta
     2701 ttggcaaagt ttttgggaaa aagaacaaga taaaaatatc catatcaaaa acgaaagctt
     2761 tttgaaagag ttaagtaaag aatttgaaat ttattgtctt gtttatggag gtagaagttt
     2821 agtacttaaa gaagtactag atcttaatac taaatttata gtgcttgatt ttgaagatga
     2881 agagctggtt ttaaaatacg aaaaagaagc gtggaatttt ttacaaagtc ttatagggct
     2941 tgatctttct agtatagaaa aaatagcttt gagagttcat tttatagatc ttgtagaaaa
     3001 aatagctagc ttaagacaaa atttgatttg ctatagaagt aatgaagaaa gagcttatca
     3061 aatttatcaa aatgatgaat ttgttaagct cttagattgt caaattcacc gtcattttaa
     3121 agaaagtctt gaatttgaac ctttatttaa agaaggtttt atggggctta aggtagatgc
     3181 gcagtttttg ggcgaagatg taaatattat cttagcaggt agtgtttata cggattataa
     3241 aaagatatta caatacataa aggaggcggc atgagcgaac aaaagcaaga aattgaaaat
     3301 gaaaatgcac aaaattctga aaatttgcag gatgatttgc aagataatga aaaaaacgaa
     3361 acaaatgaat tacaaaaaga attagaggaa ttaaaagata aatatatgcg tgcaaacgct
     3421 gaatttgaaa atattaaaaa aagaatagaa aaagaaaagc taagtgctat ggcttatgca
     3481 aatgaaagct ttgcaaagga tttgcttgat gttttagatg ctttagaagc agctgttaat
     3541 gtcgaatgcc aagatgaaat tagcttaaaa atcaaagaag gagtgcaaaa tactttagat
     3601 ttatttctta agaaacttga aaaacatggg gtggctctta tcaaagatga aaaagagttt
     3661 gatcctaatt tacacgaagc aatgtttcat gtagatagtg aaaaccatca aagtggtgaa
     3721 gtggttcaag tgcttcaaaa aggttataaa atagccgatc gcgtgatccg cccaaccaaa
     3781 gttagtgtag caaaataaat tttaataaaa ggataaaaaa tgagtaaagt tataggtata
     3841 gatttaggaa caaccaattc ttgtgttgct gtgtatgaac gcggcgagag caaagtaatc
     3901 ccaaacaaag aaggaaaaaa cacaactcct tcagtggtag cttttacaga taaaggcgaa
     3961 gttttagtag gcgatagtgc aaaacgccaa gcggtaacca accctgaaaa aaccatttat
     4021 tctatcaaaa gaattatggg tttaatgatc aatgaagatg cggctaaaga agctaaaaat
     4081 agacttcctt accacatcac cgaaagaaat ggtgcgtgcg caatagaaat cgcaggtaaa
     4141 atttatactc cgcaagaaat ttcagcgaaa gttttaatga aactaaaaga agatgctgaa
     4201 gcttttttgg gcgagagtgt tgtagatgcg gttattactg tgcctgcgta ttttaacgat
     4261 gcacaaagaa aagcaacaaa agaagcagga actatcgcag gacttaatgt attaagaatt
     4321 atcaatgagc ctacttcagc agctctagct tacggacttg ataaaaaaga tagtgaaaaa
     4381 attgtggttt atgatctagg tgggggaact tttgacgtta ctgtgcttga aactggcgat
     4441 aatgtagtag aagttttagc aacaggtggt aacgctttct taggtggtga tgattttgat
     4501 aataaactta tcgattttct agcaagtgaa tttaaagatg aaacaggcat agatcttaaa
     4561 aatgatgtta tggctttgca acgcttgaaa gaagcagcag aaaatgctaa aaaagaatta
     4621 agctcagcta atgaaactga aattaattta ccatttatca cagctgatgc gagtggccca
     4681 aaacacttgg ttaaaaaact tactagagct aaatttgaag gtatgattga ttctttagtg
     4741 gctgaaacca tcactaaaat caatgaagta gtaagcgatg cagggcttaa aaaagatgag
     4801 atcaaagaaa tcgttatggt agggggctct actcgtgttc ctttagtgca agaagaagtg
     4861 aaaaaagcct ttaataaaga tcttaataag tctgtaaatc ctgatgaagt tgtggctatc
     4921 ggtgcggcga ttcaaggtgc ggttataaaa ggtgatgtaa aagatgtgct tttacttgat
     4981 gttacaccgc tctctttggg tatagaaact ctaggcgggg taatgactaa gattatcgaa
     5041 aaaggtacaa ctattccaac taaaaaagag caagttttct caaccgctga agataatcaa
     5101 agtgctgtaa ctatcaatgt tttacaaggg gaaagagaat ttagtcgtga taataaatct
     5161 ttaggaaatt ttaatcttga aggaattcca ccagcaccac gcggtatgcc acaaatcgaa
     5221 gttacttttg atatcgatgc aaatggtatt ttaactgtta gtgcaaaaga taaagcaaca
     5281 ggtaaggctc aagagatcaa aatcacaggt tcaagcggac ttagcgagga agagattaat
     5341 aacatggtaa aagatgctga acttcacaaa gaagaagaca aaaaacgcaa agaagctgta
     5401 gatgctagaa atgcagctga tagcttggcg catcaagtag aaaaatcttt aagtgagttg
     5461 ggtgaaaaag ttgccgctgc tgataaagaa aatattcaaa aagctcttga tgatttgcgt
     5521 gagactttga aaaatcaaaa tgcaagcaaa gaagagattg aaagcaaaat gaaagcttta
     5581 agtgaagttt ctcacaaact agctgaaaat atgtataaaa aagatgagcc aaacacagca
     5641 aatgataaaa agaaaaaaga tgacgatgta atcgacgctg aagttgagta atcttaaaat
     5701 ctctattcaa gcctttttaa aaggcttgaa aattttttaa aattttaaaa aaatgacaaa
     5761 atctgtaaaa tataattttt ttattagctt gctacctaat ttttcattga ttttttaacc
     5821 aattcttttt gaagttctaa tttaaattag acaattcatt
//
LOCUS       DAPIWV010000108         5848 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.109, whole genome shotgun sequence.
ACCESSION   DAPIWV010000108 DAPIWV010000000
VERSION     DAPIWV010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5848
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.109"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            443..3270
                     /locus_tag="RJ272_001487"
                     /pseudo
     CDS             443..3270
                     /locus_tag="RJ272_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            complement(3538..3819)
                     /locus_tag="RJ272_001488"
     CDS             complement(3538..3819)
                     /locus_tag="RJ272_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
                     /protein_id="HDV7382541.1"
                     /translation="MAKYKIYYHKDFIKAYKKISDEERKITDEVIVKLSNDENLEPKY
                     KDHQLKGVLKDFRECHIKSNLLLIYQKHNNELELNILKLGSHSKLFKKY"
     gene            complement(3806..4033)
                     /locus_tag="RJ272_001489"
     CDS             complement(3806..4033)
                     /locus_tag="RJ272_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382542.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            4306..4446
                     /locus_tag="RJ272_001490"
     CDS             4306..4446
                     /locus_tag="RJ272_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382543.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKNYGKNGKRVRKTCYKCGVS
                     KT"
     gene            4453..4741
                     /locus_tag="RJ272_001491"
                     /pseudo
     CDS             4453..4741
                     /locus_tag="RJ272_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
     gene            4941..5084
                     /locus_tag="RJ272_001492"
     CDS             4941..5084
                     /locus_tag="RJ272_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382544.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
     gene            complement(5638..5778)
                     /locus_tag="RJ272_001493"
     CDS             complement(5638..5778)
                     /locus_tag="RJ272_001493"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382545.1"
                     /translation="MIEMMIPAYKDEISNVAKENEKINQMIKLAIEKMFKNDFLNKIN
                     NF"
BASE COUNT         2035 a          839 c          968 g         2006 t
ORIGIN      
        1 cgtgattatg ccacagggtt gcagccttgt ggcaaaaccc ttaatgcaat tataccaaac
       61 aaactcttta acttctttaa tatagtccat gaaaagattt tacttgttat tccttagcac
      121 tttgtttttt gcaccttcat ttttatttgg tgcaaatatt aaaaatataa aataatatag
      181 aaattcaata gaagaagaga agcttagtta aaagtttgtt tggtgtaagc caaagggatt
      241 gttctaaacc ctgcaaaagc aggggatact caataagcct tgacatagca aagcattaag
      301 agtataatta ttagaacaat tttgagcatt aaactcacct cccttctggg tggtaaatta
      361 acgctaaagg gtggcagccc tttggcgttg caccctttta taattatacc aaataaactc
      421 tttaacttct ttaatatagt ccatgaaaag attttacttt ttgtttttta gcactttgtt
      481 ttttgcacct tcatttttgt ttggtgctac aaacatagct aatggaaatc taatctatac
      541 ttggggttat ggcgatgtga tgaatgaaat catgcaggcg gttaaaggta taaccactga
      601 aacagattat atcgttaatg cagccttggc tatttcatta ttgcttttca gtatcaaaaa
      661 agcaatggat ggacaaacaa gtcctgtgtt tgaatttgga aaaatgttta tgctttttgc
      721 tgtagtgtgg tacatgtttt taaaagcacc aaatgacaat aatcaccgct tcatgattca
      781 cgatgaagtc actagcaaag attatgtcat ttctcaaatt cctataggta taggaaaaag
      841 ctttgcattg atgacgcaat ttgagaaggt tatcctagaa gctatggaaa aacatttttc
      901 aactccacaa tctacaaatt tttctaatgc aggtttaggt ttttcacttc aagtgatgag
      961 tactttgcca agcttaaagc tttcggctat tgatgcaact ttgcaaaaaa atattgattt
     1021 ttattttaga aactgcgttt cagtaggtat cttgcttaat caacaaggta gaaatctttt
     1081 tcaaaactct gataatttaa tacaagatct tttcacaaac ataggcaatg gctctcagct
     1141 tactcctttg tttgaaaata acaataatat tgaaaaacaa agtgttgtgc cttgttctga
     1201 tgcaggtcct caaatcgttg aaatgattaa aaacgataca gatgaagcta tgaagattca
     1261 tgctgctttg cttggtatgg cgaatgatat ggcaaattat gagcaaaagt tcttaggcgc
     1321 tgcacaaatc tataacgaac aagctgtaag tgctagatct tatttgcaac aatccatgat
     1381 aatgcttgct tctcaagatg caatcattaa taccgctaaa tcagtaggtt taaatcctgc
     1441 ttctgtggct gcaaatactg cttatgcgga tcagcaattt tatgcaagta tgcaagcaca
     1501 aggacacttg gcacaaactt atttgccttt agctaaagct tatttaacag ctattatcat
     1561 aggtttgtct tggcttgttg ctttgctttc tattgtgttt ggctcttatg ctcatattaa
     1621 gatgtttttt actctatgta tttggatagt actttggact cctatacttt gtattattaa
     1681 ttttataaat gattttaatc ttatgaatgt tgcacaggtg ataacaggtg gaaaagcagc
     1741 tttaagctta ggagataaca ttcttatatt caaagaagta gcaaatagat caaatttcat
     1801 gaattatctt gtaatgagta ctcctgtttt agcttatgct atagctaaag caagtgaaca
     1861 aggatttgta acttttgctt ctggattatc tcaagctcta acaggtgctt caagagctgc
     1921 tggaagcttt gcaaatcagc aagccttatc tacacaaact agcattgctg ctcctagagg
     1981 agatgaagtt tgggcgatga atgcaggggt gatgagcttg caaagtgcta taagtgcagg
     2041 gggtggtaga tttagcatgt ctagtataac agggggtgga acaacagcta gagatgtgaa
     2101 tacaggtaca agttttgctt tgggaaatca tggtgaaatt tctaatatga ataggacttg
     2161 atgcaaaaca cgcacaaagc gaaactcaaa ctagacaaga ttctcttgct aattctattg
     2221 ccgatactca caaaacaggc actaatcacg gtattacctc tgattatctt agaaatcatg
     2281 gtgcaggagt agaagatact aaagcaattg agaaagcaga aacgaaagct ttaaaagaaa
     2341 ctatgaatga agcattaagc gataaatcta gcttctctga aacagacaaa aaagctttag
     2401 aaggaagtat tagcgcttat gctagtggct cagcagggat tgaaatcttt ggaaatggtg
     2461 gaaaaatagg tggagaaatt aaagggacag cttcaatagg cacaggctca actgaaacac
     2521 aagaatattc aagaagccta agtaaagaag ggtaggctgc atttgataaa atgtatgctg
     2581 aaaaacttgg caatatcatt aaatctaatg atagtgtggc ttctgcttat tctaatgctc
     2641 tatctacaag cacaggtagt gaatttgctg atgccaaaca aaaagcacat tcttatagtg
     2701 aagcaagtca atacagtgaa gctatacagg caagtaattt tacctaatat ggctgaaaat
     2761 tacattgctg aaaataattt gggtggaact agagaacaac aagttgctgc tgcagctaaa
     2821 gggttagaaa acttagccgc aaggggagat ttgcaaggct tgttgcatta tgctaatatg
     2881 aatacagcta agccaaatgc tgatagaaat catgatgtta gcaataaatc ttattacagt
     2941 ccttcaagtg taggagctaa taatgctcat aataatgatg cagtagctaa tcaaaataag
     3001 ttaaacagct taggaacaac aggggggggg gataatataa gaaatgaatt taaccaacaa
     3061 agtggggctg ctataagtaa tttcaaaaat caaggaacaa gtacttctaa tgtggtcaat
     3121 aatagtgcta aagatgccat agtagaacaa gatgctaaca ggagaatggg agtaaatcct
     3181 agctcttata taatacaaga tgcaagtaaa tcaggtaatg agcttgcaaa agaagctcaa
     3241 ggtttatttg atgctatgag caaaaaataa gtctagcttt ttagttaggc ttagtgatct
     3301 cgtatagcac cgaatatata atcaaattta cgaggatcgc tttctatata tcccccaatt
     3361 tcacttgttc ccccatgctt tttctcatca tagggaacta tttttatatt tttagcaagg
     3421 aataacacaa aagcaaaaca atagctgcaa ctccgcaaga aagccaaaga acaagtatga
     3481 gtttttcggt tgtagtcact tttgcttttt tcctacattt atccatcttt attcctttca
     3541 atatttttta aataacttac tatgactacc tagttttaaa atatttagct ctaactcatt
     3601 attatgtttt tgataaatta ataacaagtt agactttata tgacattctc taaaatcttt
     3661 taatacacct tttaattgat gatctttata tttaggttct aaattctcat cattagaaag
     3721 ttttacaata acttcatcag ttattttacg ctcttcatcg cttatttttt tgtaagcttt
     3781 tataaaatct ttatggtaat aaattttata ttttgccatt ttgataagct ttcacaaagt
     3841 cttgatgcga attaaagctt aatgcagtat tgactttttt ttctttatca agttctttgc
     3901 ttgcatttaa tatcttactt tcaaaactac tcaacttagg cttagaaatt ttacatttgg
     3961 catttatgct ttttgctaaa cccttgaatg caggtaaaaa attttcatta acattttcaa
     4021 taataagagt cataagcaac tcctttctca atttatataa cataattata ccatttttta
     4081 ataatttttg caagtatttt tgttacagaa tgcctatttt ttaggggttt gaaacggatt
     4141 ttttttgact tgattgtttt atttattgct taatgaaaat taatttgggt ataattagca
     4201 aattaatttt tttagcttca tattgatttg ctaatcaaat ataaatgtta aaatagtcta
     4261 tacagtattt aggatattaa ttgaaagaat aaagagggta gtaaaatgaa aaccacagaa
     4321 tataatacgc aacaaaaaaa taataaagaa tatttagctg agagagaagc agttaaaaaa
     4381 aactatggca aaaatggaaa aagagttaga aaaacctgct ataaatgcgg tgtttcaaag
     4441 acttaaaaat aaatgaaata tatagaacta agcgaagcta ttgctataca cgaaaagatt
     4501 attgaaaaaa caggcggatt aagtggttat aatgaaacac aaagtaggat atttggctag
     4561 tgcattagag tatataaaaa acgatgatta ttatcctaca ataactgata aaattacaca
     4621 tttaatattt tcctgtgtaa aatttcatcc atttgctgat ggaaataaac ggacttcgat
     4681 atttctaggt atgcactttt tagatttaga taagatttta ccaaagaata tgaattcata
     4741 ggtagtccta ctttagatga tatagtaaaa cacaaacaaa gtgatgaagt ttttaaagtg
     4801 ttttataaaa aagatgataa aataagattg cttagagtta gtaatatgca agctttaaat
     4861 cgttttgata aacttaaagg tgcaatgaca aaaataattt tagatagtgg ttttaaacct
     4921 gataaataaa aaggattaat atgtgtaaag atcaagaata tatagagcaa agaaaggttt
     4981 tatgggaaaa aagttttgaa gcctttaaag atgataaagt gtatcaaaaa gaacagcttg
     5041 aacttgcaga agcaggaatt aatgatggct tagaggagga ttaattatat aattagccat
     5101 atattttata ttagtttttt taaaaaaccg tttttactat attctttaat cttttgtatt
     5161 gtattttgat tgtcttattt atgtaatttt atatataaaa aaagtttttt ccaattttac
     5221 aacaaaatcc tttatggtat aataaaaata aaaattatat aagaaaggat acaaatggct
     5281 ataaaaattg aaattagcgg atttgataag gattttttac ctgtttttga gagtttagct
     5341 aaaagcttat ctcaaaagcc tattttatca atgttttttc ttattttttg agcaaaaact
     5401 tacgcatacc cttttttcat tttttgtttc tttaacttct caaaaaaatt tgtgcctcat
     5461 taaaacttgg aaatacatta ttttttcttc ctgtgcaact tttaaaacgc acatttccgt
     5521 aaactctctc aaccatatat tcctcaaata gagtggtaat aatttctatg ctataatagc
     5581 gaatgtttcc tttctcagtt attctgtgca acaaaacatt attcataaaa aacctaatta
     5641 aaaattattt attttattca aaaaatcatt tttaaacatt ttttctatag caagcttaat
     5701 catttgatta attttctcat tttctttagc tacattagaa atttcatctt tgtaagcagg
     5761 aatcatcatt tctatcattt ttaatgtttt ttcatcaaat aatactcttt ttggaattaa
     5821 tatttcattt ttttgaatat tttcatta
//
LOCUS       DAPIWV010000109         5842 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.110, whole genome shotgun sequence.
ACCESSION   DAPIWV010000109 DAPIWV010000000
VERSION     DAPIWV010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.110"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            67..762
                     /locus_tag="RJ272_001494"
     CDS             67..762
                     /locus_tag="RJ272_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7382546.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLSEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            759..2012
                     /locus_tag="RJ272_001495"
     CDS             759..2012
                     /locus_tag="RJ272_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDV7382547.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHKCGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     ESKFESSKYEKEITTLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            2013..2507
                     /gene="purE"
                     /locus_tag="RJ272_001496"
     CDS             2013..2507
                     /gene="purE"
                     /locus_tag="RJ272_001496"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDV7382548.1"
                     /translation="MNFVSILMGSKSDYETMKEAVKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2517..3053
                     /locus_tag="RJ272_001497"
     CDS             2517..3053
                     /locus_tag="RJ272_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HDV7382549.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3065..3928
                     /gene="glyQ"
                     /locus_tag="RJ272_001498"
     CDS             3065..3928
                     /gene="glyQ"
                     /locus_tag="RJ272_001498"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDV7382550.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3915..4640
                     /locus_tag="RJ272_001499"
     CDS             3915..4640
                     /locus_tag="RJ272_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDV7382551.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMICKNISLISMHTNYDL
                     SHLNIYFTEEILGFKISFKDEFLIYVENSISFEALCDWVKKKLNLQILRVSNCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4650..5366
                     /locus_tag="RJ272_001500"
     CDS             4650..5366
                     /locus_tag="RJ272_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HDV7382552.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5363..>5842
                     /locus_tag="RJ272_001501"
     CDS             5363..>5842
                     /locus_tag="RJ272_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7382553.1"
                     /translation="MIFFYYFLTWAAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARISDKSYHSYQRFSFFYKKIF
                     "
BASE COUNT         2171 a          676 c         1104 g         1891 t
ORIGIN      
        1 ttttagataa aattgattat aattttgagc aattattgaa aatctagatt taaaaaaggg
       61 aaaaaaatga ctcaagaaga gcttgatgct ttgatgaatg gtgatgttga tcttgattca
      121 gagacagaag cagaggtaaa aaccgaagaa tcgaataccg aagaagatgc tttgatgtta
      181 gaagatgtca aaatagctga ttacaaacct aatcctagcg tggtatggcc accaccccca
      241 ccaaatcagg agcataaagt tgtacatcag ttagatgatg ttacaaaaga tagcgagctt
      301 aaagcaacgg aaatgatgga taagcttgaa agtattaata atttttttgc ggattctgaa
      361 agtttactca aagagataaa taaagcaata gaaaaaaata ttgatatttt ttctaaactt
      421 agtgaaaaat ttcctaatgt ggaaagtttc agtgaagctt tagaattaaa caatcaagct
      481 aaaaaaagtt ctaaggagat tgtcggaaat cttcaaagcg gacaagatga agtgatgatg
      541 gcaatggatg caatgcagta tcaagatata catcgtcaaa aaatcgaacg tgttattaat
      601 gtaatgcgtg ctttaagccg ttatatgagt tccttatttg aaggtaaaat tgatgataaa
      661 aaacgtgtaa gttctgcagt gcatattgaa ggtgatagta ctgctgatgt tgtaagtaat
      721 gatgatatag aagctttaat tgcaagttta gggcaaaaat gatcattcct gaaatagtag
      781 ctcctgcagg aaatttcaca aaattaaaaa ttgctttagc ttatggcgca gatgcggttt
      841 atgcgggtgt gaataatttt tctttaagat cacgcactgc aagagaattt aattatgaaa
      901 gttttgaaga agctattaaa tatacccata agtgtggtaa gaaaatttat gttactttaa
      961 atggttttca tttaagctcc caaattgaag gtttaaaaag acatatttta aaattgcgtg
     1021 agatgaaacc tgatgctttt attgtagctt ctgttggagc tatgcgtctt gttaaagaac
     1081 ttgcacctga aatttcttta catgtttcta ctcaggcaaa tattttaaat tatttagatg
     1141 ctcaagttta taaggatatg ggtgctaaaa gggttgtaat tgccagagaa ttagggctta
     1201 aagacgctaa agctttaaag gaaaattgtg atattgaact tgaagctttt gtgcatggtt
     1261 ctatgtgttt tgcttattca gggcgttgtt taataagctc tgtgcaaagt ggaagaatga
     1321 gcaatcgtgg atcttgtgca aatgactgta gatttaatta tgagctttat gctaaaaatc
     1381 cagaaaatgg cactttattt cgcttagaag aagatgaaaa tggtactcat gtgtttaatt
     1441 ctaaggattt aaatctttgt tcttatatag aaaaaatcat gcaagaaaat tgtatcagtg
     1501 cttttaaaat agaagggcgt actaaaagcg aatattatgt tgcgcttaca acaaggactt
     1561 ataaaatggc catacaagat gctttagaga gtaaatttga gtcaagtaag tatgaaaaag
     1621 agattactac acttaaaaat cgtggtttta cagatggtta tcttgtttcg cgtcctttag
     1681 aaaaaaccga cacgcaaaat cataatacaa gcatagaaga aggttctcat caagtgcatg
     1741 ctataagcga agatggaagc ttttttaaat gtaaagggaa aatcgtttta aacacgcctt
     1801 atgaaatttt agccccttta ggcgatgtga ttcaaacttg cgataatgaa ctaggtaaaa
     1861 tttatcaaaa agaggataaa tattttatag agtttaaaaa actcattgct aaaaacaata
     1921 aagaatttag cgaaattcat agtggcaatg aacatgaaat ccaattacca aataaaatca
     1981 gtgcattaag ttttttaaga aaggaaatat agatgaattt tgtttctatt ttaatgggaa
     2041 gcaagagtga ttatgagact atgaaagagg ctgttaaaac tttagaaagt tttggggtaa
     2101 agtatgaact tatcatctca tcagctcatc gtagtccaaa aagaacaaaa gagtatattg
     2161 caaatgctga agaaaaaggt gcgaaagttt ttatagcagc agctggaatg gcagcgcatt
     2221 tagctggagc tgttgcagct tatacaacaa aacctgtttt gggagtgcct atgtcaggaa
     2281 gcaatcttgc aagtatggat tctttatttt ctacggtgca aatgcctagt ggaattcctg
     2341 taggaacttt agctattggt aaggctggag cgatcaatgc tgcttatttg gctatgcaaa
     2401 ttttagctat ttatgatgtt gatttagcac aaaagcttaa agaagatcgt cttgaaaaag
     2461 aaaaaaaact tgtatctgat tcaaaagaag tagaagtttt attataaggg ataaaaatgc
     2521 aaacctatct tgaacttgaa gaattttgta aacttgtgca tttaaatgaa gatgtggtta
     2581 agggtatgat ggccaatggg gctttaaatt ttaaagaaga agagggtaaa atttacatcg
     2641 aagctcatca aggtactttt agtgtagtac ctagttctgc aaaatctcaa actgcaatgg
     2701 taaattcaat gactttagca ggagaaagtt ttgttgaaaa aacaatagga actattttaa
     2761 atttgcatga aaaagtttta gatgctaaag atgaaacact tgaagcatta aaaaatgaga
     2821 ataaattttt aaaagacgct ctttattcta tgcaagaact ttatgatgaa gatagaaaaa
     2881 ctatagaaac cttaaacaat gagctaaaac atgcgcgtga agagatagaa tttctcaagc
     2941 gtaaatataa attaatgtgg agtaaaaccg cagaaatttt tggagctaag acagagcctg
     3001 atttggaaat gaataaaaat ttagaaaaac ctattgaaaa tatggaacaa taaagagaga
     3061 tgcaatgact ttttcacaaa tgatacttaa tttacaaaat tattggcaag agcaaggttg
     3121 tgcgattatg caaccttatg atatgccagc aggtgcagga acctttcatc cagcaacttt
     3181 tttaagaagt ttaggaaaaa aaccttgggc agctgcttat gtggctccaa gtagaaggcc
     3241 tactgatgga cgttatggtg aaaatcctaa tcgcttaggt gcttattatc aatttcaagt
     3301 tttgattaaa cctagtcctg ataatatcca agaattatat cttaaaagtc ttgaaaattt
     3361 gggttttgat ttaaaaagtc atgatattcg ttttgttgaa gataattggg agagtccaag
     3421 tttgggtgct tggggtttag gctgggaagt atggcttgat ggtatggaag tcactcaatt
     3481 tacttatttt cagcaagttg gcggtatagc agtagattta gtaagtgctg aaattactta
     3541 tggtcttgaa agaatagcca tgtatcttca aaatgttgat aatgtttatg atatagtttg
     3601 gagtgaattt aatggagaaa aaattaaata cgcagatgtg cataagcaaa gtgaatatga
     3661 atttagtaaa tacaattttg aagtaagtga tgttaagatc ttaaatgagc agtttgaaaa
     3721 ttcttacaaa gaatgtaaaa atattttaga acaaggacta gctttacctg cttatgatta
     3781 ttgtatgctt gctgcacata cttttaatct tttagatgca agaggagcaa tttctgtagc
     3841 acaaagacaa gattatatgt taaaaattcg tgaactttca aaaaattgtg ctgaaattta
     3901 taagaaaaat ttaaatgaag ctgagtgaaa tttataattt tttagatcaa ttaagtccct
     3961 ttgatatcca agaatcatgg gataatagtg gaattttgct tggagatagg gatagtgaaa
     4021 tttcaactgt ttatttaagc ttagatattg atgaaaatat cattaaagaa gcgagtgaaa
     4081 attctttaat tatcacacac catcctttga tatttaaagg tttaaaagat ttatatgaca
     4141 agacttatcc tagagctttt attaaagaaa tgatttgtaa aaatatttct ttaatcagca
     4201 tgcatacaaa ttacgattta agtcatttaa atatttattt tacggaagaa attttaggtt
     4261 ttaaaatttc ttttaaagac gaatttttaa tttatgtaga aaattctata tcttttgaag
     4321 ctttgtgtga ctgggtgaaa aaaaagttaa atttacaaat tttacgtgta agcaattgtg
     4381 gtaaaaaaga cattaagcgt attgctatat gtactggaag tggcggggat ttaatttcta
     4441 aagtagatgc ggattgtttt ttaagcggag attttaaata tcatcaagct ttagaggcac
     4501 ttagtaatca aatcagtctt attgatttgg gtcattttga aagtgagaga tatttttctc
     4561 aatgtttagc aaaagacttg aaaaatttgc cgctacaagt tataataaca gtttcaaaaa
     4621 atccatttca atatttttaa ggaaaataaa tgaataaata tctcgaacaa ttagtgcttt
     4681 tatcaaaaat agatcaagaa attgatagtt atgaaccaaa aatagacagt attaatagga
     4741 ctttaaaaga tgctgagtta aaaataggaa aaatcaacac agatttagaa aaaatcgatg
     4801 aagaaatcaa agatatagaa aatcaaaaag tacaaaataa tgctcatatt tctgagtttt
     4861 cggcaaaaat taaagagctt tctaaaaaaa gtggtgcagt aaaaacagaa aaagaagcta
     4921 atgctttaaa aattgaagaa gatattgcaa aagagcaatt agacgctgca aatgatgaaa
     4981 ttgtaagact ggataaaatt ttagagaata aagaaactta taaaaaagaa cttgaagaag
     5041 aaaaaattaa acaagagcaa aatattaatg agattagagt aagcattaaa tctgaaatgg
     5101 aagttcttga aaaagataga atgagtgttt atgataaaaa aaccaaactt gtgggcgaga
     5161 tgaatcaaaa agttttaagt ttttatgaaa aaattcgcaa atgggcgaaa aatactgctg
     5221 tagttcctgt taaaaaacaa gcatgctatg gatgttttat gaaaatttac gataagactt
     5281 atctgtctgt tgtaaaaggt gaagagattg taacttgccc tcattgtgga agaattcttt
     5341 ataaagagca agaagaacaa aattgatctt tttttattat tttttaactt gggcggcatt
     5401 tttattttgt gccgtcttta ttcttttgct ttctttttta aaatccaaat acaaaactag
     5461 tttaaaatcc cgattttttc tttataaaaa tttacatcaa gaaaaagctg atgtacattt
     5521 tcatgcttgt tcttacgggg aggtaagaag tattaaaact ttggttttga aatttgattc
     5581 aagaataact actattactc aaacaggttt tgaatatgca aaagaatttt gtaaaaaggt
     5641 aaattatctt gcttttgaaa attttttgcc tttttggttt aagccttgta aggttttggt
     5701 aatttttgaa gcagaatatt ggcttatgct tgttttcatg gcacacattt ataaaactaa
     5761 gattattttg cttaatgcaa gaatatctga taaatcttat cattcttatc aaagattttc
     5821 ttttttttat aaaaaaattt tt
//
LOCUS       DAPIWV010000110         5800 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.111, whole genome shotgun sequence.
ACCESSION   DAPIWV010000110 DAPIWV010000000
VERSION     DAPIWV010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5800
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.111"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..2518
                     /locus_tag="RJ272_001502"
     CDS             <1..2518
                     /locus_tag="RJ272_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HDV7382554.1"
                     /translation="PKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKS
                     EPIAPKLNILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQ
                     ILDETIEIDKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPE
                     RFLKPKKLEDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKE
                     KLEQEYKAYQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESD
                     KINENKNLDKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKI
                     DNEKTNDQEIKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHKQ
                     EINESEIDKKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDD
                     LTMALMAKSIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGK
                     DIVGNAFVTDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLE
                     FSIYNDIPHLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELG
                     GEELPFIVVIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGL
                     IKANLPSRISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEF
                     EIEKIVDFLKDQQSVEYDESFLKDQQSVGVTTNESFDGEVDELYEEAKRVILEDGKTS
                     ISYLQRRLKIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(2604..2876)
                     /gene="rpsO"
                     /locus_tag="RJ272_001503"
     CDS             complement(2604..2876)
                     /gene="rpsO"
                     /locus_tag="RJ272_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDV7382555.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            3051..3461
                     /locus_tag="RJ272_001504"
     CDS             3051..3461
                     /locus_tag="RJ272_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HDV7382556.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            3448..5622
                     /gene="flhA"
                     /locus_tag="RJ272_001505"
     CDS             3448..5622
                     /gene="flhA"
                     /locus_tag="RJ272_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HDV7382557.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTATPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            5631..>5800
                     /locus_tag="RJ272_001506"
     CDS             5631..>5800
                     /locus_tag="RJ272_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-to-5' oligoribonuclease B"
                     /protein_id="HDV7382558.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFG"
BASE COUNT         2161 a          790 c         1018 g         1831 t
ORIGIN      
        1 tccaaaattt gcaaaagaaa ttttaaaaat agaattagat tttacttatt tattaaaagt
       61 agagcaagct tttaaatctt tacttatgcg tgtatttggt ggagaaaacg agaaagaaga
      121 tgtaggtaaa tcagaaccta tagctccaaa attaaatatt ttgcaagata gtatttatgg
      181 aaatttacaa ataaacaaaa aaggggaaac caataactta gaacagataa ttaaagatag
      241 caatatcaat gcaagtaaaa attcaattac cacggccaag gaaaattttg aaaaactaaa
      301 aaatcaaatt ttagatgaaa ccatagagat tgataaacaa agtttaaaag aatcaagaag
      361 ttttgttcat gagcattctc aacaagtgcg aaatttcgca caaaaggcta gtaaaatgag
      421 cattagtctt gatgaagatt ttaattttat ttcagaagaa gaggtagata tgattcctga
      481 acgtttttta aaacctaaaa aacttgaaga tataaagcaa atagatacaa ataaaaattt
      541 agatgagcca agttataaac gtaaaaatat tgaaattcca gtttctaatc aagaagttaa
      601 accaaaaatt tttacaaaag agcttgaact tagagagaat ttgataaaaa aagaaaaact
      661 agaacaagaa tacaaagcct atcaaaatga aattttagaa aataaagtaa aacaagaaat
      721 taaaaaatta gaagaatatg atgcgataaa ttcaagcgat attatagaag ggaataaata
      781 tagttttaat agcccaaaaa caattaaaac agaaacagaa gaatcagaca aaataaatga
      841 aaataaaaat ctagataaag cagacaatat ctttgaattt gctcccattg tagaagagtt
      901 aaatcatcct tatatagaac ctactcctat aaaaaatata aatgaaatag ttatagaaga
      961 aaaaaataca ctcgatttta tccaaaatac agaaactaaa atcgataatg aaaaaacaaa
     1021 tgatcaagaa attaaacttc aaaaagcagt tttagccaaa gaaattgcta ttaaccaagc
     1081 tttattgcgt gaaatagagc agggcgaagt agaaaaacca aaagatttca ccttgccgcc
     1141 attagatttt ttagctaatc caaaagaaca caaacaagaa atcaatgaaa gtgaaataga
     1201 taaaaaaatt tataatcttc ttgaaaaatt gcgtcgtttt aaaataggcg gcgatgttat
     1261 aagcacttat gttggtcctg tggtaactac ttttgaattt cgtcctagtg cagatgtgaa
     1321 agtaagtcgt attttaaatt tacaagatga tttaactatg gctttaatgg caaaatcaat
     1381 ccgtattcaa gctccaatac caggaaaaga tgttgtaggt atagaagttc caaatgatga
     1441 aattcaaacc atttatttaa gagaaatttt acaaagtgaa gtttttaaaa acgctaaaag
     1501 tcctttaacc atagctttag gtaaagatat agtaggcaat gcttttgtaa ccgatcttaa
     1561 aaaacttccg catttactca tcgcaggaac gacaggtagt ggtaaaagtg tggggataaa
     1621 ttctatgctt ttaagtcttt tatatcgcaa ctctccaaaa accttgcgtt tgatgatgat
     1681 agatcctaag atgcttgaat ttagcattta taatgacatt cctcatcttt taactcctgt
     1741 tatcacagat ccaaaaaaag cagtcaatgc gctttcaaat atggtagctg aaatggaaag
     1801 acgctatcgc ttaatggctg atgcaaaaac caaaaatata gaaaattaca atgaaaaaat
     1861 gaaagaatta ggcggagaag aacttccttt tattgtagta attatcgatg aacttgctga
     1921 tttgatgatg actgcgggta aagatgtaga attttatata ggaagacttg cgcaaatggc
     1981 aagagcaagt ggaatccact tgattgtagc tacacaacga ccttctgttg atgttgtaac
     2041 aggactaatt aaagcgaatt taccaagtag aatttcttat aaagtagggc aaaaaattga
     2101 ctctaaagtt attttagatg ctatgggtgc tgaaagttta cttggaagag gggattgttt
     2161 atttactcct cctggaacaa gctctatagt gcgtttgcat gcgccttttg caagcgaatt
     2221 tgaaatagaa aaaatcgtgg attttctaaa ggatcaacaa agcgtagaat atgatgaaag
     2281 ctttttaaag gatcaacaaa gcgtaggtgt tacaacaaat gaaagctttg atggggaagt
     2341 agatgagctt tacgaagaag ctaaaagagt aatcttagaa gatggaaaaa caagcatttc
     2401 ttatttacaa cgccgtttaa aaatcggcta taaccgctct gcaaatatta ttgaacaact
     2461 tacgcaaaac gggattttaa gcgaacctga tgccaaagga caaagggaaa tcttgtaaga
     2521 tttttcttgt gtttttgata tataaaactg attacaaaag aagaaattta aaaggcaaaa
     2581 gccccgtaaa aagggcttaa aaattattta tctctaagat ttaattcagt aattaactta
     2641 ctataagaat tataatcttt tcttttaaga taagataaaa gtctttttct ttgacctaca
     2701 agttttagaa gtcctaatct tgatgaaaag tcttttttgt agatttttaa atgttctgta
     2761 agttctgcaa ttcttgcagt taaaagagct acttgaactt ctgttgaacc agtatcacct
     2821 ggttttttag cgaatttcgc aactatttct gcttttttgg ccgaatccaa agccatgata
     2881 gacctcctga ttggtaaaat aataaaatta aagaactgta attttatctt aaaaagcaaa
     2941 aaataaactg aatttatctt ttttagaagg ttttgtcaaa atttaagtct ttttctaaga
     3001 attatttatt ataattacag ctatttctgt agttataaca aggagaatct gtgctattta
     3061 ccaaagctag cgaatacgct ttactttctt taatttatat ttctcaaaaa gaaacacctc
     3121 aagatgtaga ttctttagct ttagagcttg atattcctaa aagtttttta gctaaaattt
     3181 tacaaacttt agctaaagat ggcttgttaa aatcttttaa aggggcaaaa ggtggttttg
     3241 ttttaatcaa agaaccaagt caatatacta taaaagaaat tgttaatagt gctgaaaaaa
     3301 aggatatcag tgtatttgaa tgcagtggtg gcacttgtcc aaataataaa gaagaaaatt
     3361 gcaccttaat gcctatgtta gtaaatttac aaaataaagt agatgaattt ttagattcta
     3421 ttactttaga agatattatg aaaaataatg gcaaaaaata aaatagtcga tttagttttt
     3481 cctttcttgg ggcctttaat cgctcctgtt ttaaaagcta aaagcttgac tattgttggt
     3541 tttttagttt gtattttagc tattattata gttcctttac caagtcctat tttggacttt
     3601 ttcttggctt taagtatagc tttatcggta ttaattattt taatttctat ttatataccc
     3661 aaaccgacag atttaacaac ttttccaact ttaatcttga ttatcacttt atttaggctt
     3721 tcattaaata tagctaccac aaggatgatt ttaagcgaag ggcaaaacgg ccctgaagct
     3781 gtgagtgaga ttatagcagc atttggagaa tttgttgttg gtggaaatat ggtcattggc
     3841 gtgattgtat tttgtatttt agtattgatt aatttcatgg ttgtaacaaa aggtagtaca
     3901 agggtttctg aagtacaagc aagatttaca cttgatgcga tgccgggtaa acaaatggct
     3961 attgatgcgg atttaaatgc aggacttatt gatgaacaaa ccgctagagc aagacgtcaa
     4021 gaagttattg ctgaggcaaa cttctatggt gcaatggatg gttcttctaa atttatcaaa
     4081 ggagatgctg ttgcaggaat tatcataact attataaata tcataggtgg ttttttaata
     4141 ggatcttttc agcacgatat ggctttaagc gatgctgctt ctacctatac tattttaacc
     4201 ataggtgatg gacttgtatc tcaaattcca gggcttatta cttctactgc aaccgctata
     4261 attatcactc gtgcaagcaa agatgaggaa aattttgcag aaggaacttt aactcaactt
     4321 ttaagcgaat atcgcacgct tttaatagta ggttttgtac tttttatctt tgcgttagtg
     4381 cctggtttgc caactttatc cttgggcttt atggctttag tatttttaag ccttggctat
     4441 cttaccaagc aggttaagga aggtaaaatt gatataacta cagttaaaaa aagcaaacca
     4501 agtgccgcag ctgcatctca aagtggagca ggtgggacaa cggcaacgcc tgctaagaaa
     4561 agcgaagaag aaattctcaa agaagaagag cacaagatta acgatatact caaagttgaa
     4621 attttagaac ttgaacttgg atacggactt attaagcttg ctgaaaacga acttacagaa
     4681 agaattcgct caatgagaag aagtattgct gaaagtttag gatttttaat gccaaaaata
     4741 agaataagag ataatttaag acttaaacca aatgagtata gttttaaact caagggcgtg
     4801 tctatagcaa gtgctgaaat ttatccggat aaatatttag ccatggatag tggttttatc
     4861 acagaagaga tagaagggat tgctacaaaa gaacccgctt ttaactctga tgcactttgg
     4921 attgatgcga atttaaaaga tgaagcaaca ttaaatggct atatagtaat agatcctgca
     4981 agtgttattt caacacatat gagcgaactt atcaaagcgc acgcaagcga acttctcaca
     5041 cgccaagagg tacaaaatct tcttgataag gttaaaaatg attatccaat catcgtagaa
     5101 ggtgctttag gtgtcgcacc tgtaagtctt attcaaaaaa ttctcaaaga cttgcttaag
     5161 catcacatac caattaaaga tatgcttact attttagaat ctgtaagtga tatagcagaa
     5221 gtaagcaaga gttttgatat gattattgaa catgtaaggg cgtccttagc taggatgatt
     5281 acaaatatgt atttagatga taaaggaaat ttggatattt ttatcttaga ctctgctagt
     5341 tctgcggttt taatggaaaa tgtacaattt agagatggaa gttatcactt gcctttaagt
     5401 gtagctcaaa caggtacttt agtagatact ctaagggctg aagttgccgc agtagcaaat
     5461 ggtcgtatca agccttttat actttgcgtt gaaccgcagc ttagaaaatt cattgctgat
     5521 atttgttata attttagcat taatatagta gtgttaagtt ttgcagaaat tgcagaaaat
     5581 acaaatttta ataccgaggg tattattagg atagaacttt aaggaatata atgaaaattt
     5641 atcatctttc acatacagat cttgatggct atgcttgtca atttatagta aatttttatt
     5701 ttaaaaatgt gaaattttat aattctaatt atggcaaaga aattaatgaa aattttaact
     5761 ctattatagg cgatatagaa aaagatgaaa atttcggaaa
//
LOCUS       DAPIWV010000111         5732 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.112, whole genome shotgun sequence.
ACCESSION   DAPIWV010000111 DAPIWV010000000
VERSION     DAPIWV010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5732
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.112"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            65..1591
                     /locus_tag="RJ272_001507"
     CDS             65..1591
                     /locus_tag="RJ272_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDV7382559.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            complement(1599..2777)
                     /locus_tag="RJ272_001508"
     CDS             complement(1599..2777)
                     /locus_tag="RJ272_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7382560.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(2787..3683)
                     /locus_tag="RJ272_001509"
     CDS             complement(2787..3683)
                     /locus_tag="RJ272_001509"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDV7382561.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLIFALSSQGMRVWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGTKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQSLLKQND"
     gene            complement(3680..5098)
                     /gene="gatB"
                     /locus_tag="RJ272_001510"
     CDS             complement(3680..5098)
                     /gene="gatB"
                     /locus_tag="RJ272_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HDV7382562.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNAAINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANANKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            5213..5707
                     /gene="luxS"
                     /locus_tag="RJ272_001511"
     CDS             5213..5707
                     /gene="luxS"
                     /locus_tag="RJ272_001511"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDV7382563.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSIAK
                     AWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
                     LENA"
BASE COUNT         1911 a         1018 c          795 g         2008 t
ORIGIN      
        1 taaaaaataa aattagcaaa tttaaagtaa ataagtgtat aattaaaata aaaaagggtt
       61 attaatgcaa aaagacaacc tcatagcttt tgttattttt attatcagta ctatcgcatt
      121 tgttatttgg ggatttggtt atatttcaca acatcaattg attcttttta ttcttgcttc
      181 tatatttggc atttttatgg catttaatat aggtggaaat gatgtagcca attcttttgg
      241 aacaagcgtt ggcgcaaaaa cagtaaccat taaacaagct ttaattatag cagctgtttt
      301 tgagctaagc ggggcaatct tcgcaggcgc agaagttact aaaaccatac gcagcggtat
      361 tgttattttt ccaaattctt tagatcctat gctttttgtt atcattatgc ttgctgcact
      421 tttaagctct ggggtttgga tttttattgc aaccaaaaaa ggcttacctg tatcaaccac
      481 gcacagtata gttggtggga ttgtaggtgc tagtattatg atggggcttt taaaatttga
      541 tgggatccaa acactctcta tggttaaatg gagcgaaatt ttaagaatag ctatttcttg
      601 ggtagcttct cctcttttag ggggtattgt agcttatatt atttattcat atattgataa
      661 gaaaatttta aaaccatcag aaaaactaaa tgatgatttg aaaaatatca aaaaagaaag
      721 aaaaaaattc aaagaagaat actttttaaa tttaaaaaca aaatcccaag aagaacaaat
      781 caaagaactt tccgctatag ctttggatga agaagaacaa gaaaataatt tctatagaaa
      841 taaaatgaag gaatttaagg atcaagaaaa agatatagat atttactcta ttttaaaaac
      901 tcatatgcca atcattgctt gtattgctgc tgctatcatt tcggcaatgt ttttatttaa
      961 aggtttaaat aatgttagca ctttggatat tttacaaaac ttttggatta tcggaattat
     1021 aggaactata agttatgttg taacatttgc tatagtcaaa atcgttaaaa aaacagaact
     1081 taataaaact actgatagaa ttttctcatg gtttcaaata tttacagcct ctagttttgc
     1141 attttcacac ggagccaatg atatagccaa tgctataggt ccttttgcag cgattttaga
     1201 tgtcttaaaa aacggtacaa ttaacgcgac ttctcctgta ccttttgcag ctttagctat
     1261 gtttggagtt gctctagttg tagggctttg gtttttaggt aaagaagtga ttactacagt
     1321 gggttcaaaa cttgcaacca tacgccctac tactggattt tctgcagaac ttggtgcaag
     1381 catagttata ctcttagcta cacaatttgg aattcctgtt agctccaccc atatactcat
     1441 aggtgctata ttgggtatag gagtgtataa taaaaacgca aattggatta tgatgaagcc
     1501 tataggattg gcttggatta tcactttacc agccgctggt attatggcag cacttgtatt
     1561 tttaggattt aaactatctt taggaattta agtaaagctt atttttctaa aatatttttt
     1621 cctttaatta tatgcatttt aatctttcca aaaagtttat cctcagaata aagagaactt
     1681 tttggagcaa aaatttcttc attctcatca aaaagaacta gattagcttc tttgccaact
     1741 tctataactc cactatttaa acctaaaaat tcactaggat ttttacttgt aaatcgacaa
     1801 agctcttgcc aatttaaaaa tccttctttg attaaaaaag tataacaaag acttataaat
     1861 tcgcatacgc tatgaattcc aaaagccgct tcatcaaaag ctaaatcttt taaagaaatt
     1921 gattttgcac tatgcaggga agttaaaaag ctaatctttc cttcttttaa agcctctctt
     1981 aaagccaaaa catcttcttt gcttcttaaa ggtggcataa gtttcgcagc cgtattaaaa
     2041 tcttcacaag cactatcatc tttgataaga tgatgaatgc ttacaagttt taaatccttt
     2101 tcatctaata atactaaaga atctttcaaa cttaaaagat caaaaataac tttattttta
     2161 taaaatttag ccaattcttt cattttagct atctggctag tttcagcgat tttactcatg
     2221 cctataagcc ctagctcaaa actcatttca caatcattca tcactccatt atcatcaaaa
     2281 tccttatcat aacaacgcac aaaaattgga gagtctttca taaaagcata ttgtgaactt
     2341 acttttaaag tatttgcatc taaagagctg tcaagttcta gagcacaagc acctttattt
     2401 aaaagagtgg ctaaattttt aagcttgccg tttgcatcct taacccgcac acttgaaaaa
     2461 atttgcatct ttctttgagc taaattttgt aaaaataaag caaaactttc ttcatcaaaa
     2521 tccatgcaat cacgcaaaac tatactagaa attcctcctt ttagacactc attttctaaa
     2581 agctctaaat tagctaaaga aaatttatcg ttttttaaac tcacacacaa atccacaaaa
     2641 gatggaagta aagtcatacc tttagcatct aaaatttctt cgccttgtaa attagaacca
     2701 atattggtaa tttttccttc tttaatctct atatcttgta aagaatctcc ataaattttt
     2761 gcatttttaa ttatcatgat ttttccttaa tcattttgct ttaataaact ctgcgttgct
     2821 tcttgcacgc ttttaccctt aaaaattgcc actacttcat ttacaatagg tgtataaatt
     2881 cctttcattt ttgctagttt ttctatagca taagcagttt ttacaccttc tgctacttca
     2941 ttaagttcga ctaaaatact atctaatttt tgattttgcg ccagttttaa acctactcta
     3001 taatttcttg ataaaacact cgttgcagtt aaaaacaaat cccctgcccc actcaatcct
     3061 aaaaaagttt cttctttagt gccaaaaaat ttaccaaaac gatgcatttc tataagtcct
     3121 cttgaaatca gtgctgctct tgcattatta ccaagtttta acccatcact aatcccactt
     3181 gcaattgcta aaacattctt ataagcacca caaatttcag caccacgaac atcattatca
     3241 atataagttt taataaaatc agggaaaaaa cttgcaaatt ttttacaaag ctcttgattt
     3301 atcccgctaa tcatcaaagc agtaggaagt ttttgcatta cttcagcagc aaaagaagga
     3361 ccgcttaaaa cacaaaaatt ttcttttggt acaaaatcta aaaaaatttc atctaaaaat
     3421 tgacaacttt gatcttctat gccttttgaa gcaattaaaa ttttttgtcc cttgttgatg
     3481 aaattttctt taagccatac acgcatccct tgagaactta aagcaaaaat aagatattca
     3541 cattctaaag cttcttttat gctaacaaaa tcttctaaat cacgctgatg caaagaactg
     3601 ataaaacaat tgtgattttc ttttaaggct agatgtaaag cactgcccca ttttcccgca
     3661 ccaataaccg ctatacgcat caaccaagct ttgtttttaa aatttcattt acttttgcag
     3721 ggttaaaagc tcccttaccc tctttcattg tttgacccac aaaaaatcca aaaagcttgt
     3781 ctttaccact tttatactct gcaaccttat tggcatttgc atttaaaatt tgttcaatca
     3841 ccgcttctat ggctgaatca tcacttactt gcttaagtcc tagcttttct atagcttcat
     3901 caatttccac actagtattt tcaaatacaa aagctaggac atctttagcc gcttttgcac
     3961 tgatggtgcc atcttctata cgtttaatta aaactccaag cttttgagca tctacgggag
     4021 aattttctat agtcaattct ccttttaaaa gtcccataag ttcagtattt aaccaattta
     4081 cacaaagctt aggatttaaa ttttgagaaa taagactttc aaaaaaacga ctcatttcta
     4141 aagaactgat taaaacctca gcatcacttt cttttatacc aagctcgtct ataaagcgtg
     4201 ctttcttctc atcaggaagt tcaggaattt taatatccaa aaactcatct tttaacaaaa
     4261 caggaagcaa gtcagggtct ggaaaataac gatattcagc cgcttcttct ttaccacgca
     4321 tacttcttgt aactaaattt gttgtatcaa aaagtctggt ttcttgaact acttcttgtt
     4381 cgtaagttcc atcttcccaa gcctcacttt gtctttttac ctcatattct atagcttttt
     4441 ggataaaacg aaaagaatta agatttttaa tctctactct agtataaagt tttgtatcac
     4501 ccttaggtct tatgctaaca tttgcatcgc atctaaaact tccttcttgc atatttgcat
     4561 ctgaaatgtc taaaaagcgt ataatagaat gaagtttttt aagataagct actgcctcat
     4621 cactacttct aagctcaggt tcactgacaa tctcaagcaa aggagttcct gcacgattta
     4681 agtccacttt agaaaaatta ttttcgtgga tatttttacc tgcatcttct tctaagtgtg
     4741 ctcttgtaat acctatgcgt ttattttcac cctttacatt gataaaaagc tcaccctttt
     4801 ctactatagg gatatcaaat tgtgaaattt gataagcctt aggtaaatct ggataaaaat
     4861 aattcttacg gttaaaaaca ctttttttat taattgctgc attgacagct tttccaaaag
     4921 ctatagcttt ttttacagcc tcttcattta aaacaggcaa agctcctggt aaggccaaac
     4981 aagtgggaca aacattagta tttggagctt ctccaaaaga agttgcgcat gagcaaaaga
     5041 tttttgtttt tgtatttaac tgagtatgaa cttcaagacc tataactact tcgaacataa
     5101 aatttccttg aatttttaaa tgttttattt tatctttttt tcttttagaa aggctttaaa
     5161 tattaacttt aaatgctata attcttagac aatttatatt taaggagtta aaatgccatt
     5221 attagatagt tttaaagttg atcataccaa aatgccagcg cccgctgtgc gtttagctaa
     5281 agttatgaaa acacctaagg gtgatgatat tagcgtattt gatttgcgtt tttgcatacc
     5341 aaataaagac attatgagcg aaaaaggtac tcatacctta gaacatttat tcgcaggatt
     5401 tatgagagat catcttaatt caaattcagt tgaaattatt gatatttcac ctatgggttg
     5461 tcgcacgggt ttttatatga gtttaattgg aacacctgat gagaaaagta ttgcaaaagc
     5521 ttgggaagca gccatgaaag atgttttaag cgtaagcgat caaagcaaaa ttcctgaact
     5581 taatatctac caatgcggaa cttgcgcaat gcattcttta gatgaagcca aacaaattgc
     5641 ccaaaaagtt ttaaatctag gtattagcat aataaataac aaagaattaa aactcgagaa
     5701 tgcttaaaaa gaatctttat tttttaaatg at
//
LOCUS       DAPIWV010000112         5675 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.113, whole genome shotgun sequence.
ACCESSION   DAPIWV010000112 DAPIWV010000000
VERSION     DAPIWV010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5675
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.113"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            146..1123
                     /locus_tag="RJ272_001512"
     CDS             146..1123
                     /locus_tag="RJ272_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HDV7382564.1"
                     /translation="MLKRLALLIALSSLVLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1124..2110
                     /locus_tag="RJ272_001513"
     CDS             1124..2110
                     /locus_tag="RJ272_001513"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDV7382565.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2113..2580
                     /locus_tag="RJ272_001514"
     CDS             2113..2580
                     /locus_tag="RJ272_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HDV7382566.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2684..4150
                     /locus_tag="RJ272_001515"
     CDS             2684..4150
                     /locus_tag="RJ272_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDV7382567.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4178..4906)
                     /locus_tag="RJ272_001516"
     CDS             complement(4178..4906)
                     /locus_tag="RJ272_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7382568.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4899..5642)
                     /locus_tag="RJ272_001517"
     CDS             complement(4899..5642)
                     /locus_tag="RJ272_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7382569.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
BASE COUNT         1936 a          734 c          951 g         2054 t
ORIGIN      
        1 ttttaaaaca agcctttatg atttgtaaaa attatatcat aaataaggct gcattgttaa
       61 tataattaat attttttaag aaaaaaaata ttataatcac aaacattttt gacttaaaaa
      121 aatttgaaat acctaaggaa aaacattgtt aaaacgactt gctttattaa ttgcactttc
      181 ttcattggtg ttgcatgcct cagatcttgt taaaatttat cttaatcaag gattagatgc
      241 tgttggtgta gcgattgaaa aagaattaac tcaaaaggat ttttggttaa gtgaaatagg
      301 agataaaaat atttcacttg gatactatga tgataatgtt gctatcgtgc ttacaaataa
      361 aacagataaa attctccgtg tttattctta cgaggacgga aaaataagaa aagattttga
      421 acaaaaagaa ataataactg gattaatggg tgataaaaaa atagaaggag atttgaaaac
      481 gccagtaggt ttttatgagt taggccgtaa gtttaatcca ggtgatcctt attatggtcc
      541 ctttgctttt gccacaactt atccaaattt acttgataaa gtacaaggaa aaacaggtgg
      601 tggtatttgg atccatggct atcctttaga tggttctaga cttgatgaat ttaaaacaag
      661 agggtgtatt gctttattta ataataattt ggagaaattt gcaaaagttg tgcaagataa
      721 aaaagttttt gttatgacag aagaaaaaga aaaaattaga gctaaaaagg atcaaatcgc
      781 tagtttattg gctgatcttt ttacatggaa actagcttgg acaaatagtg acactaatgc
      841 ctatttaagt ttttatgatg agcaagaatt taaacgtttt gataaaatga aatttgaaca
      901 gtttgcttcc atgaaaaaat ctattttttc tcgtaaagaa gataaaaaga ttaaattttc
      961 agatattaat atcagccctt atccgaattt agaaaatgaa actatgtata gaatttcatt
     1021 ttatgaggat tattacacta aaaactatca gtttagaggc gataaaattt tatacgttaa
     1081 gatagatagt aaaggtaaaa tgaaaatttt agcagagcaa taaatgtctt taataaaaat
     1141 tgatcaaaaa gcttatgaat acaatttaag acatattgct aaaaaaatag ggagttttca
     1201 aagattaatt tgtgttttta aagataatgc atatggacat ggagctaagc ttttagctcc
     1261 attagccaaa aatttaggag tttcttttgt tgctgttaag agtgaagaag aagctcgaga
     1321 aatcgaagaa ttttttgaga atatattaat actatcacat cgtcctcatg gtaatgaaaa
     1381 ttctcgattt atttatgctt taaatgacat ttctcaagta aaaaattaca agcaagatat
     1441 aaaaatacat ctaaaaatag atacaggcat gcatcgcaat ggaatttgtg tagaaaattt
     1501 agagcatgct ataaatctta ttcaaggtag tgatttaaaa cttactggaa tgtttacaca
     1561 ttttgctagt gcagatgaaa tggatggaag tttttttgtt caaaaagaaa attttcaaaa
     1621 agctaaaaag atagtaaaaa aatatttttc aaatttatta tttcattcgc ataattctgc
     1681 agcattattt agagggaaaa ttcccgaaga tgaatattgt agagttgggc ttgttcaatt
     1741 tggatatggg gattcaaatt taaaaagagt tttaagcttg tatgctcata gattaagtca
     1801 aaggatttta caaaaaggac agagtatagg atatggaggc atttttactg ctgcaaagga
     1861 tatggaagta gcaacttatg atttgggtta tgctgatggt cttttccgat acaatggaaa
     1921 aggggagtta gtgcttggaa atggaaaagt aatgcttgga aagatgtcaa tggatagttt
     1981 ttcttgtgaa aattctggtg aggaaatttg cgtgtttaaa gatgctgata tttgggctga
     2041 tttttttcat actattaact atgaaatttt agtaaaatta aatcctaata ttcaaagagt
     2101 tctagtataa atatgtttaa tatagtttta gtccacccta gaataccgca aaatacaggt
     2161 agtataggta gaatgtgctt taatgctggt tttaaacttc atattgttaa accaactgtt
     2221 tttgatattt cacaaaaggc tgttagaagg gcaggacttg attactggga taaattagag
     2281 cctattattt gggagaatct tgaagaattt ttgaatgaaa atatgattta taaaaatcgc
     2341 ttttttttcg caacaactaa gagtcaaaaa gcttattttg atgcagaatt tcaaaaaaat
     2401 gatttcttat tctttggaag tgagagttat ggtttgccta tggaattaat gcaattaaat
     2461 tgggaaaatg ctataactat acctatgaaa tcttatggaa gaagtttaaa tttagccaca
     2521 agcgttggta taatctctta tgaagcttta agacaaaatt ttagaaattt tgcttcttaa
     2581 aagtttcaaa tttacacaat agcttaaaac aaataaaatc ataaagtcct ttttataaaa
     2641 attatgttaa agtaaaattc agattatttt ttgaggagtt tggatgaaat tagatattat
     2701 gctagatttt gccaataaag cgtctgatat tatagctaat aagattgtcc caaatacaga
     2761 cattattatg gtagttttac ttattgtttg tgggctttat tatagttttt taactcgctt
     2821 tgttcagttt cgtatgttga gttctgtatt taaaattctt acagaaaaaa acgaaggaca
     2881 cgctaaagaa catatttcac cttttcaagc attaatgatc tcaactgctt ctagagttgg
     2941 tataggaaat attgctggaa tttctttggc attggctaca ggtggagctg gtgctttatt
     3001 ttggatgtgg gttatggcat tttttggtgg tgcctcagca tttgctgaaa gtaccttagc
     3061 tcaagtttac aaatcaaaag atgatacagg cgggtttaaa ggtggtccag cttattatat
     3121 aaaaaaagcc ttaggctcac atttttttgg agcttttttt gcttttattc ttattattac
     3181 ttatgcttat ggatttaatg gacttcaaag tcaaacaatg acttcgtctt ttaaagttta
     3241 ttatgatatg tttaatccaa atgctgctgt agattttgca tcaagttctt ggccaatgat
     3301 tattggtatt gttttaacta tttttggtgc atggatgttt ttttctcacc atactaaaat
     3361 aggtaaaatt agttctttaa ttgttccttt tatggcttta gcttatgttt tacttgccgt
     3421 gattgctgtt ttaatgaatt ttgataaaat tccttctgtg attcatatga ttttacaaag
     3481 tgcttttgat tttaaagcga tttttggtgg ttttgctggt tctgctttgg ttatagggat
     3541 taaaagagga cttttttcaa acgaagcggg tatgggctcg gcacctaatg cagctgcagc
     3601 agctttgaca agtcatccag ctaaacaagg tgttatacaa gccttttcag ttttaattga
     3661 tgttgttgtt tgtacaagtt ctggattttt agttcttttt tctatggcat atttaggact
     3721 tggagaaagt aaaattgacg gtggaatgcc tttagttcaa gaagctatgc gtgagtatta
     3781 cggtagcttt ggaatccatt ttattactat agctattgtt ctttttgcaa taacttcttt
     3841 aataggaaat tattattatg ctcaagctaa tgttaaatat ttaacaaatt ccaaatttgt
     3901 aatgaatttg tttagaatta cagctgtggc tatgattttt ataggctcgc aaatgaattt
     3961 aaaacttgct tggaatttgg ctgatttgac tatggctttc atggcaacga caaatattat
     4021 atctttattg cttttaggtg gtatagtaaa taaagtttta aaagatttta atatgcaaca
     4081 aaaatctggt atagatccta aatttaatgc tagcaaactt ggaattaaaa acgctgaatg
     4141 ttgggattaa aattcataag ccttagtggc ttatgaatta atgatttaaa accttgttta
     4201 aaaattctct caatctttca ttgctaggat tttcaaatac ttctttaggg cttgcatcaa
     4261 cagcaatttt tcctttatcc ataaaaaata tacgattggc aacatttcta gcaaagccca
     4321 tttcatgagt tactacaagc atagttaaac cttcttttgc aacatctttc ataatgctta
     4381 gaacctcgcc tatcatttca ggatctagag ctgaagtagg ttcatcaaat aaaataacat
     4441 caggattcat catcaagctt ctagcaatag ctatgcgttg tttttgtccg ccagagagct
     4501 tatggggcat tatattttct ttgtctgcta aacccacctt agcaagaagt aattttgctt
     4561 tttttatggc ttcttcttga cttaaaattc ctgttttaat gggcgttaaa cataaatttt
     4621 ccataacatt tttattggca aaaagattaa aatgctgaaa taccatgcta actttttgcc
     4681 tgatcttatt aatatcaatt tctttatcaa gtatgttttg cttattgatt aaaatttccc
     4741 cactatcagc tagttctaag cgattgatgc agcgtaaaaa tgtacttttt ccgcctccac
     4801 ttggacctat gatagctatt acatcgcctt ttgagattgt agtgttaata ttttttaaaa
     4861 cttctaattc tccatatttt ttttgtaaat ttttaacttc aatcattttt attcatccta
     4921 agttcaagtt tttttgcaaa atagctaaaa atttttacac ttacataata aacaagtcca
     4981 gtgaaaataa taggttttgg attgtaaagt acggcttgca agctttgact ttgcatggta
     5041 atatcaataa cactaataaa tcctacaaca gaagtttcct taaataaaga aataaattca
     5101 ttagctaatg caggtagaat gtttttagta gcctgtggaa gaataatttc tttcattgaa
     5161 gttttgtaat caagtcccat tgctcttgca gcttccattt gtcccttatc tacactatta
     5221 atgccacttc ttacaatttc tgctatataa gccgagctat taagtcctag tgcaagaatg
     5281 gctgcataaa ggttatctat aaaagtaaaa attacaaaag caaaaatcat caattgtaaa
     5341 attactggtg ttcctcgtat aatgtctata tattcatcta taataaaatt aagcgtttta
     5401 aatttagaga agtgtaaaat agctaagcta aaaccaataa tcactccgat aataacagca
     5461 caagcagtta ataaaagcgt aataagataa ctttttaaat aagcttttgc attttctgta
     5521 tagccatagc ttgcaactcc actaggatct tgaattttta atatttctat cgggaaagaa
     5581 aaatagcccc ataaaataat aataacaaaa aaaacaaaaa ttcttatatt tttctgattc
     5641 aatttgtaaa ccttttcaga gaaattattt aaaaa
//
LOCUS       DAPIWV010000113         5667 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.114, whole genome shotgun sequence.
ACCESSION   DAPIWV010000113 DAPIWV010000000
VERSION     DAPIWV010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5667
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.114"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            2..112
                     /locus_tag="RJ272_001518"
     CDS             2..112
                     /locus_tag="RJ272_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382570.1"
                     /translation="MKKIILFLLCFGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            123..1127
                     /locus_tag="RJ272_001519"
     CDS             123..1127
                     /locus_tag="RJ272_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7382571.1"
                     /translation="MKKIFLMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEIGFR
                     "
     gene            1127..2743
                     /locus_tag="RJ272_001520"
     CDS             1127..2743
                     /locus_tag="RJ272_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7382572.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2727..3635
                     /locus_tag="RJ272_001521"
     CDS             2727..3635
                     /locus_tag="RJ272_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7382573.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            3671..4876
                     /locus_tag="RJ272_001522"
     CDS             3671..4876
                     /locus_tag="RJ272_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HDV7382574.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKKIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(4904..5566)
                     /gene="sodB"
                     /locus_tag="RJ272_001523"
     CDS             complement(4904..5566)
                     /gene="sodB"
                     /locus_tag="RJ272_001523"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HDV7382575.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQVA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         1938 a          717 c          961 g         2051 t
ORIGIN      
        1 tatgaaaaaa ataattttat ttttactgtg ctttggcttt gcttttgctt gctctgaaca
       61 ttctcatacc gattttaaag atcttaataa aaccgagtat aattctcaat aaaggataaa
      121 atatgaaaaa aatctttctt atgtttttaa cggctttttc atttttaggt gctagtgagc
      181 ttaatattta ctcagcaaga cattatgatg ctgattttga aatcataaaa aaattcgaag
      241 aaaaaacagg tattaaggtc aatcatactc aagctaaagc ttcagaactt attaaaagac
      301 tttctcttga aggaagtaat tcccctgctg atattttcat cacagctgat atttcaaatc
      361 ttacagaagc taaaaattta ggacttttat cccctgtttc atcaaaatat ttagaagaat
      421 ttatacctgc tcatttaaga gataaagata aagagtggtt tgcgattaca aaaagagcaa
      481 gaattattgc ttacaacaaa aacgcaaata tcgatattag caaaatgaaa aattatgaag
      541 atttagcaaa agctgaattt aaaggagaaa ttgttatgag aagtgctaca gctccttata
      601 gcaaaactct tttagcatct attatagcta atgatggaaa taaagaggct aaagcatggg
      661 ctaaaggtgt gcttgaaaat cttgcgacaa atccaaaggg tggagataga gatcaagcca
      721 gacaagtatt tgcaggcgaa gctaaatttg cagttatgaa tacttattat atagggcttt
      781 taaagaattc taaaaatcca aaagatgtag aagtgggcaa ttctttgggt attatttttc
      841 ctaatcaaga caatagagga acgcatatta acattagcgg tattgctatg acaaaatcaa
      901 gtaaaaatca agatgcggct aaaaaattta tggaatttat gttaagtcct gaaattcaaa
      961 aaattcttac tgatagtaat tatgaatttc ctataagaaa tgatgtagaa ttaagccaaa
     1021 cggtaaaaga ttttggaact ttcaaagaag atcaaatccc tgtgagtaag atagcagaaa
     1081 atattaaaga agcggttaaa atttacgatg aaatcggttt tagataatgt ataaaacctt
     1141 aaaatactat aaactcgggg caattttact tgcccttttt cttgctttgc ctatttttgg
     1201 tatttttgct gaactttttt atattttatt tcaaaatttt aatacaagta atttaaccca
     1261 attttcatct attaaagaaa atttgagtca tttttttgat tatttatttt taaaattcat
     1321 caaagatact tttataatta gcgtgggagt attgtgttta agcttgattt tgggtgtaag
     1381 ttctgcttat ttgatcgcaa attatgattt ttatttctgt aaaattttag aaaaattact
     1441 cattttaccc ttagccatac ctgcttatat tttagccttt gtttatgtgg gaattatgga
     1501 ttttcaagga ttttttcacg aaaattttgg ctttaggatg gattttttca atcattatgg
     1561 tgttattttt gttttggcta tttctttata tccttatatt tatttatttg ctaaaacagc
     1621 ttttaaaagt gaagctaaag aggcttatga agtagctaaa atcatgaaat attctgaatt
     1681 tagaattttt acacgcgtgg cacttttgag tgcaagacct gccatttttt ctggagcttt
     1741 attggtttta atggaaactt tgagtgatta tggtgcaagt gcttatttgg gagtggatac
     1801 tttttcggct ggaattttta aactctggta tgatttgaat gattcttatt cttctagtgt
     1861 tttatcgggt attttaatgc tttttgtatt tttgattatg tatgtggatt attattataa
     1921 aaataaacat cattatagtt ttaatcaaaa tttagctctt tttatcaaaa aaagaaaatt
     1981 aaatcctatt aaacaaattc tatcctgtat ttattgtttt atgattgctt ttgtaggttt
     2041 tattttacct tttatttggc tagtttattg ggggctaaaa gatcataagc tttttgaatc
     2101 gcaattttat attatcagtt ttcaaactat aatcttagct ttaatcactg ctttaattac
     2161 cactttttta gcttattttt tgatgtttag ctctaggata gttaaaaatc atttttttaa
     2221 tttatttatt ttaaaaataa gttctttggg ttattctata cctgctgctg ctttagggat
     2281 tagcattata gtgctttttg tatttttgga taaatttttt cacatgagtt tattgggaaa
     2341 ttctttactt gttcttgttt ttgcttatat aattcgtttt ttagcgagtg caatttattc
     2401 tttagaagga ggatatagta aaattcatct aaatattgat gaggcaagtt taaatttaag
     2461 agcgagttat tttattttat tttttaaaat tcacacacct ttaatgaaac attttttatt
     2521 tttggctttt attattgttt ttattgatac gattaaagaa cttcctttaa gtagaatttt
     2581 agcgcctttt ggctttgaaa ctttaagtgt taaagctttc tggtttgcaa gtgatgaaag
     2641 aatttatgat gcagctttgc cttccttgtt tatcgttttt ctttctttaa tggttgttgt
     2701 ttggatggat aaaatcacaa ggaaagatga tgttagaaat taaaaattta tctaaaaatt
     2761 ttgaaaaaat acaagcttta gaaaatatca atcttcatgt caaagaagga gaatttttaa
     2821 gcattttagg aggtagtgga agtggaaaaa gcacgctttt aaggattatt gctaagcttg
     2881 aacaagctag ttcttatgat ttgttttctt gcaaaggtga agtggctttg atgtttcaaa
     2941 attatgcttt atttcctcat ttaaatgttg agaaaaacat actttttgca ctttacgata
     3001 aaaaagataa aaatcaaatt ttaaatcatt tgcttaaaac ttttgaaatt gaagatttaa
     3061 gatataaaaa aatcgatgaa atttcaggag ggcaagcgca aagagtggct tttgctagag
     3121 ctatagcaag aggatgtcag cttttgcttt tagatgaacc tttttctaat ttggatcaaa
     3181 atttaaaaca ggatttaaga agagaattga aaaaaatgat agaaaatcaa ggcattacgg
     3241 ctattatggt aactcatgat attgaagatg cttattgtat gtctgatcaa atcgcttttt
     3301 tagaaaaagg aaaaatttta gctcatgcaa atcctaaaga gctttatttt aagcccgatt
     3361 ttaaaagtgc gcaaatttta cctgatttaa atatcataga agaaaaactt gatttagaag
     3421 atgaattttt tgcttggata gcttcaaaaa attatatttt tggttatgca gaacttaaaa
     3481 taggaaatcg ctttgaggct aaaattttac aaaaagaatt tttaggggct ttttatagac
     3541 ttaagttaag atataaaaat atagaatttt ttatgttatt aagctcaaat tataacttag
     3601 aagaaaaaat aaattttgat attatcaatt tttagttaaa attcctaaaa atcttttaag
     3661 gacaaatttc atgaaaaatc ttttaatcat aggcgcaggt ggagtaagtc gtgtggctac
     3721 tgtaaaatgc gcaatgaatt ctgatacttt tagcaaaatc actttagcta gtagaacaaa
     3781 aagcaaatgt gatgaaatcg ctacttttat caaagagcgt ttaggggttc aaattgaaac
     3841 agcgcaaatt gatgctgatg atagcaatgc ggttgtagaa cttatcaaga aaacaggagc
     3901 gcaaatttta ctcaatgttg ctttgcctta tcaagatttg agtttaatgg atgcttgtat
     3961 aaaagcaggg attgattata tagatacggc aaattatgaa catcctgatt tagctaaatt
     4021 tgaatacaaa gagcaatggg cgagaaatga taagtttaaa caagcaggaa ttttaggact
     4081 tttaggaagt ggatttgatc ctggtgtaac taatgttttt tgtgcttatg cacagcaaaa
     4141 tttatttgat gaaatttctt atatagatat tttagattgc aatgcaggtg atcatggcta
     4201 tgcttttgcg acgaatttta accctgaaat caatctgcgt gaggtttctg ctaaagggcg
     4261 ttattgggaa aatggcaagt ggatagaaac gcagcctatg gaaataaaaa tggagtggga
     4321 ttatccagaa gtaggagtga aagatagcta tttgctttat catgaagaac ttgaaagctt
     4381 ggtaaaaaat atcaaaggtt taaaaaaaat acgctttttt atgacttttg gacaaagtta
     4441 tttaactcac atgaaatgtc ttgaaaatgt tggaatgcta gggattaaac ctgtgataca
     4501 ccaaggtaaa gaaatcattc ctatagaatt tttaaaaacc ttgcttcctg atcctgcaag
     4561 tttaggacca cgcactaaag gttataccaa tataggttgt gtgattcgtg gtaaaaaaga
     4621 tggaaaagac aaacaagttt atatttataa tgtttgcaat catgaagaat gttacaaaga
     4681 aactggcgcg caagctgtga gctatactac aggtgttcct gctatgatag gtacgaaatt
     4741 aatcgctaaa ggaatttggc aaggaaaagg cgtgtttaat atggaagaat ttgacgctaa
     4801 gccttttatg gaagagctga attctcaagg acttccttgg aagattatcg aaatgactcc
     4861 aagcttagga gagtaaaaaa ggcatcgttt tgatgccttt aaattatttt acagggtgaa
     4921 gttcatttgc ataaaagcta actgatccca tgccttcttt taaagcccat tcgtaagctt
     4981 ttgcaacaaa ttcccagtta atatgagcat agaatttttc taaataagca gggcgtgcat
     5041 tacgatgatc tacataataa gcatgttccc aaacatctac aacaagtaaa ggaactttat
     5101 cttcagtaat tggtgtagct gcgtttgaag tacctacaaa ttctagtttt tgatttttag
     5161 tattataaac taaccaaaac catcctgaac caaaaactcc tgtagcacct ttgatgaatt
     5221 cagctttgaa attttctaaa gatccaaatt ctttttctag tgccacttgt aaattagcat
     5281 ctatactttg acatgaaccg ccacagccac agcctgtact tggcttaatg caatcaaaat
     5341 aaaaatcatg attataaact tgagctgcgt tattaaatac gcccccattt gaagttttga
     5401 taatacttac aagatcttta cctgcaaatt cagtatcttt aataagatta tttagatttg
     5461 taacataagt attgtgatgt tttccatgat gatagctaaa agtttcagca ctcaaaaaat
     5521 caccaaaagc attggtatca taaggtaatt ttcttaattc aaacataatt tctcctttat
     5581 ttttagtttg atattgaaaa tattaccata ataatattaa aaagagtaaa aatatcttaa
     5641 aagcttagtg ggtaaaattt ctattta
//
LOCUS       DAPIWV010000114         5204 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.115, whole genome shotgun sequence.
ACCESSION   DAPIWV010000114 DAPIWV010000000
VERSION     DAPIWV010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5204
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.115"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..1112
                     /locus_tag="RJ272_001524"
     CDS             <1..1112
                     /locus_tag="RJ272_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDV7382576.1"
                     /translation="FKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYD
                     FPLFLFANAKAYLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDE
                     KNDFLKMCEKAKEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPS
                     KYGVVLGSSPEFLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKML
                     VDLARNDASKFGTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGT
                     LSGAPKIRALEITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASG
                     AGIVLQSESQKEYAEICAKRKALLVAFENLKKENQ"
     gene            1109..2710
                     /gene="trpD"
                     /locus_tag="RJ272_001525"
     CDS             1109..2710
                     /gene="trpD"
                     /locus_tag="RJ272_001525"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDV7382577.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQLAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEVRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            2697..3296
                     /locus_tag="RJ272_001526"
     CDS             2697..3296
                     /locus_tag="RJ272_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HDV7382578.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFALAGGIGLDN
                     IHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            3293..4471
                     /gene="trpB"
                     /locus_tag="RJ272_001527"
     CDS             3293..4471
                     /gene="trpB"
                     /locus_tag="RJ272_001527"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDV7382579.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            4464..>5204
                     /locus_tag="RJ272_001528"
     CDS             4464..>5204
                     /locus_tag="RJ272_001528"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDV7382580.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSETFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGMDIHSVFKLLARIKIKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIF"
BASE COUNT         1834 a          584 c         1026 g         1760 t
ORIGIN      
        1 agtttaaggc aaaatattat gaagctttaa gcaagaataa aatttgcgac tttgctggat
       61 tttttggagt ttttagtgca aattttgtat ctttgtttga aaaaattcca ctttcttcta
      121 agaaaaatta tgattttcct ttatttttat ttgccaatgc taaggcttat ttgatttatg
      181 agaaaaatag caagatgttt tttaaatttg gtgcttcaaa atattttgaa tatttaaaag
      241 atgatattga accaatgaaa aagaaacaaa aaaatgattt tgaaatttta aattctttag
      301 aagatgaaaa aaatgatttt ttaaaaatgt gcgaaaaagc caaagaatat cttttaagtg
      361 gagatatttt tcaagtggtc ttaagtaagc aactttgtat caaacatcaa gtaaatgctt
      421 ttgattatta tgagagttta agtgctttaa atccaagcgc ttatatgttt tattttccaa
      481 gtaaatatgg tgttgttttg ggttcttctc cagagttttt attgaaaatt aaaaaaagag
      541 agatttattt agcccctatt gctggaacta gaaatttgga aaataactgt gatcttttag
      601 ctttagaaaa agatctttta agtgatgaaa aagaacttag tgaacataag atgcttgtag
      661 atttagcaag aaatgatgct tctaaatttg gcactcaaac aagagtggaa aatctttttt
      721 ctattattaa aaataaattt gtaatgcaca tagtgagtga agtgtatgcc aatatgaaag
      781 aagatgcgag tatttttgat gtgattgaag cagtttttcc agcgggaact ttaagcggag
      841 ctcctaaaat aagagcttta gagatcacta gcgagcttga agattgcgat cgtggaattt
      901 atggtggtgc ggtaggattt ttaaatttta acgaagacat aactttagcg attttaatcc
      961 gttgcgcttt ttttactcaa gataaggctt atttggcaag tggggcgggt attgttttgc
     1021 aaagtgagag tcaaaaagaa tatgcagaaa tttgtgctaa acgcaaggcg cttttggtag
     1081 cttttgaaaa tttaaaaaag gaaaatcaat gatactttta attgataatt atgattcttt
     1141 tgtttttaat gttaaaagca tgttagagca actcagcaat gatgaaattt tagtaagaag
     1201 aaatgatgca atttctctga gtgaaattaa aaatttaaat cctactcata ttattttaag
     1261 tcctggtcca aagcatccaa gtcaaagtgg gatttgtctt gaaattttta aagcaaggct
     1321 taatatccct gttttgggca tttgcttagg gcatcaagct ttagctttag cttttgattc
     1381 tttagtggtt aagatgcaag agcctatgca tgcaaaaaat tctttgataa aacagtgcag
     1441 ggaaaatgaa ttattttcta atttgccttc aaattttagt gtaatgcgtt atcattcttt
     1501 agaggttaaa cagcttagtg atgagcttga aattttagcc cttgatgaaa agggtgtgat
     1561 tatggctttg ggacataaaa atttacctta ttatggtgtg caatttcatc ctgaaagcta
     1621 ttttagtgaa tatggcttac aacttttttc taatttttta aaacaagata taaaaaaacc
     1681 acaaaaacaa gaaaatcctt taagttttta tttgcaaaaa atgagtgaaa atcatttttt
     1741 acaaagcgat gattttgagc aaatttgtaa gattattatg tctaaagatt atgaaatttt
     1801 acaattagcg gctttgttga ttttaatcac tgaaaagtct ttaaacgaaa aatctttaag
     1861 tgcttttgta agacaaattt taagatattc tcaaactttt agtgatgaga gtgagatgat
     1921 tgatatttgt ggaacaggtg gagatggttt taaaagtatc aatgtttcta cgactagtgc
     1981 ttttatttta gcagctttag gagtaaaagt agccaaacac ggaaatcgtg ccatttcaag
     2041 ttctagcgga agtacagatg tgttagaagc tttaaatata actactccaa acactttaga
     2101 atcagtttta aaacaactaa ataatcaagg gcttagtttt ttacatgctc cattttttca
     2161 tcctttggta ggagaactta aagaggtcag atcaagactt ggagtaagaa cggtttttaa
     2221 tgttttaggt cctttattgc accctaattt aaagttaaaa tatcaactta tgggaaatta
     2281 tcacgcacct gtgcataggc ttttgataga ggttttaaaa aatttaggac gcaaaaaagc
     2341 tttagtggta agaggaaatg atggtatgga tgagcttagt atttgcgatg aaagtaaaat
     2401 ttatgagctt tgtgaaggag aaattttaga gtattctatc tgtcctgaac aatttggttt
     2461 taaaagagct tttcatagtg aaatcatagg atctagtgca tatgacaacg ctaaagattt
     2521 aaaagatatt ttaagcggta gaatgcaagg ggcaaaattt gatttggtag ttttaaatgc
     2581 tatgtttgca ctttatacag ccaataaagc aagttcgcct ttagtggcta aagatatgat
     2641 tttagaagcc atttattcag gtaaggttat agaatatttt aaggagtatc aagcttatgc
     2701 taaagcttaa aatttgtggt attaaagatg aaaaaaatgc caaagattta gcttttttaa
     2761 atattgattt ttttggactt atttttgcta aaagtccaag aagagtgagt ttagaacaag
     2821 caagaaattt aagtgcaatt tttcatgaaa aagataaaaa agttgtcggt gtttttgtag
     2881 atgaaaattt ggaacaaatt ttaagatgta ttaaagaagc taagcttgat gggatacaaa
     2941 tttatcgcac tattaccaaa gaagaatttg aaattttaaa ggtgcaaaat gtttttgttt
     3001 ggcaggtgat tagtgtggaa aatagtttag atttaaaaag tgaaattttt gctaatttag
     3061 tactttttga tgctaaggga attttaaagg gcggtaatgg aataagtttt gattggactt
     3121 tattaggttc ttatactaaa gattttgcat tagctggagg cataggtttg gataatattc
     3181 ataaggctgt acaaacggga gctaaaattt tagatcttaa ttcaaaactt gaagatgaaa
     3241 aaggcttaaa agatatcaac aaaataaaac aaattttaaa ggagttgaaa aaatgaaaaa
     3301 agcgtattat ggggattttg gtgggcagtt tttgcctgaa agtgcaatgt ttgctttaaa
     3361 tgagctagaa ggtgcttttt tgaaattttc taaagataaa ctctttaaaa aagaattaaa
     3421 cgagctttta aaaacttatg tagggcgtcc tactccactt tattttgcta gaaatttaag
     3481 caaaaaatat cagcatgaaa tttatttaaa acgcgaggat ttaaatcata ccggagcaca
     3541 taaaatcaat aatgccatcg ctcaagccct tttagcaaaa aaaatgggaa agaaaaaaat
     3601 catagcagaa acaggagcag gtcaacacgg gcttgcaaca gccactgcag cagcactttt
     3661 aggacttgaa tgtgaaattt atatgggggc aaccgatgtg caaagacagg ctttaaatgt
     3721 ttataaaatg gagcttttgg gtgctaaaat tcatgcagta caaagtgggc ttaaaactct
     3781 aaaagaagct actactgcgg ctattcaagc ttgggttgga gatattaaaa atatttttta
     3841 tgtggttgga agtgcggtag gtccttatcc ttatcctaaa atggtaatgc attttcaaag
     3901 tattatagga aaagaatgca aaatgcaact tcaaaaactc aataaaaaag tagattatat
     3961 tatcgcagct gttgggggtg gaagcaatgc agctgggatt ttttatgatt ttatcaaaga
     4021 tgaaaatgtt aaacttatag gtattgaagc aggggggctt ggcattgata cgccttatca
     4081 tgcagcgact ttaaataagg gaaaaacagg cattattcac ggtatgaaaa ccaaggtttt
     4141 acaagatgat ttaggcaata tcttgcctgt acatagtgtt tctgcagggc ttgattatcc
     4201 aggaattggt cctttgcatg cttttttatt tgaaagcaaa agagcgcaat atcatgctat
     4261 aagtgatgaa gaatgtatgc aggctttaaa attactttgt aaagaagaag gtattattgc
     4321 agcgattgaa agttcgcatg ctttggcatt tttagaaaaa ctttgtccaa ctttaaaaaa
     4381 gaaaagcgtg atagtagtaa atctttcagg caggggagat aaagatatgc aaatgattag
     4441 agattataaa aaaggggtga tttatggttg attttagaaa attttataaa gaaaatgcaa
     4501 atgtggctta tacggtttta ggttatccaa atcttcaaac aagtgaaact tttttgcaaa
     4561 gattggatca aagccctatt gatattttag aacttggtgt tgcttatagt gatcctattg
     4621 ccgatggtga gattattgca gatgcggcaa aaatagctct tgatcaaggc atggatattc
     4681 atagtgtttt taagctttta gctaggataa aaattaaaaa agctttggtt tttatggttt
     4741 attataattt aattttttct tatggcttgg aaaaatttgt gaaaaaagca aaatctttag
     4801 ggatttgtgc tttgattgtg cctgaattga gttttgaaga aagtgatgat ttaattaaag
     4861 agtgtgaaag atataatata gctttaatta cacttgtaag tgttacaacc cctaaagaaa
     4921 gggttaaaaa gttagtaaaa catgctaaag gttttattta tttattagca agcataggta
     4981 ttacaggtac gaaaagtgtc gaagaagcaa tcttacaaga taaagtaaaa gaaatcagat
     5041 cttttacaaa tttgcctatt tttgtaggct ttggcattca aaataatcaa gatgtaaaaa
     5101 gaatgagaaa agttgctgac ggagtgattg tgggaactag catagtaaag tgttttaaac
     5161 aaggaaattt ggatataata atgaaagata ttgaagaaat tttc
//
LOCUS       DAPIWV010000115         5204 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.116, whole genome shotgun sequence.
ACCESSION   DAPIWV010000115 DAPIWV010000000
VERSION     DAPIWV010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5204
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.116"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..123)
                     /locus_tag="RJ272_001529"
     CDS             complement(<1..123)
                     /locus_tag="RJ272_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlfA"
                     /protein_id="HDV7382581.1"
                     /translation="MDNMKEFKIFCDESNHLFYKDNPTLCSKVMVLGALKVPSSE"
     gene            complement(128..2191)
                     /locus_tag="RJ272_001530"
     CDS             complement(128..2191)
                     /locus_tag="RJ272_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7382582.1"
                     /translation="MIEEILKDSDYKLDLFSKKAIAELETKIIAKTNKNNQIIYYTNC
                     LIRDKEIKLTPEEIVRQLYIDKLLNEYNYPKDMIKIEFGVHFGREVKRADIVIIDKIQ
                     ITVPYIIIEVKKPKLKDSKEQLKSYCNATGATMAVWCNGKEISYYHRKDPNYFESIPN
                     IPASNQTLPDLLKVKITFDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECF
                     KLIFIKLFDELEGARDRTKSLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKI
                     KLSPSHLSVCVSSLQNVKLFNSNLEVIDDAFEYLVNKSSKGEKGQYFTPRYVIDMCVK
                     MLNPKKDESMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVK
                     EKVFGIDFDEKSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEG
                     FKRLKNLRVTKNQNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGRD
                     ILFIERNLDMLKPGGRMAIVLPQGRFNNSSDKYIREFIAQKARILAVVGLHGNVFKPH
                     TGTKTSVLFLQKWDDKLCPKCEDYNIFFATMNEPSKDNSGEKIYYPLLDSHDHLVVKH
                     DLFHPHLEGDEPIKQKDESQEEFDKRIQEYRLNVEKYKDLQKDGIAEAFIEFAKAENL
                     SFWKE"
     gene            complement(2201..3298)
                     /gene="dapE"
                     /locus_tag="RJ272_001531"
     CDS             complement(2201..3298)
                     /gene="dapE"
                     /locus_tag="RJ272_001531"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDV7382583.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSSDAFVPMEKEGFIYARGAQDMKSGVA
                     AFVDAAKNVDFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(3302..3901)
                     /locus_tag="RJ272_001532"
     CDS             complement(3302..3901)
                     /locus_tag="RJ272_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HDV7382584.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSYVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(3894..4595)
                     /locus_tag="RJ272_001533"
     CDS             complement(3894..4595)
                     /locus_tag="RJ272_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDV7382585.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGQYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(4638..5192)
                     /locus_tag="RJ272_001534"
     CDS             complement(4638..5192)
                     /locus_tag="RJ272_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7382586.1"
                     /translation="MDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPV
                     YSANVLEVFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDT
                     KINAKYISFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKI
                     NEYKIELDRLEKEKEKILQKYLFS"
BASE COUNT         1676 a         1039 c          587 g         1902 t
ORIGIN      
        1 ttcagatgat ggaactttaa gcgctcctaa taccataacc tttgaacaca aagttggatt
       61 atctttgtaa aataaatgat tgctttcatc gcaaaaaatt ttaaattctt tcatattatc
      121 cattcactta ttctttccaa aaactcaaat tttctgcttt tgcaaattca ataaaagctt
      181 cagctatgcc atctttttgc aagtctttat atttttctac atttaatcta tattcttgta
      241 ttcttttgtc aaactcttct tggctttcat ctttttgttt tataggctca tctccttcta
      301 aatgcggatg aaataaatca tgttttacta ctaaatgatc atgagaatct aaaagtgggt
      361 aataaatctt ttcgcctgaa ttatctttac taggctcatt catagtagca aagaagatat
      421 tatagtcctc acactttgga cataatttat catcccattt ttgtaaaaat aaaacacttg
      481 tttttgtccc cgtgtgtggt ttaaagacat ttccatgaag tcctacaacc gctaagattc
      541 tagctttttg tgcgataaat tctcttatat atttatcgct tgaattatta aaacgccctt
      601 gtggcaatac aatagccatt ctaccaccag gctttaacat atctaaattt cgttcgataa
      661 ataaaatatc tcttcctacc ttactttgag gtttgccatt ttcttttttg cctagctcat
      721 atctagctaa aattctactc tcttttatat ctcctgcaaa aggcggattt gccattaaaa
      781 catcaaaatt aaaatcccta ttttgatttt tagttactct taaatttttt aagcgtttaa
      841 aaccttcaaa atacacatct tgccaatctt catcatcttt tacccactca tcccatctat
      901 caaagtcaat ggaatttaaa tacaaaacat ttgtatgccc atcacctgca attagattaa
      961 gcatttttga tacgcgcaca ctcttttcat caaaatctat accaaacact ttttctttta
     1021 cataatcttg acactcagaa atcttttctt gggctgtaaa gagatgactt gcttctatgc
     1081 ctctttcttt ataaattgaa cgccacacat aaaaacaagt atgtatcgga aatccacaac
     1141 ttccacttgc agtatctatc atactttcat cttttttggg atttagcatt tttacacaca
     1201 tatctattac ataacgcgga gtaaaatatt gccctttttc accttttgag gatttattca
     1261 ctagatattc aaaagcatca tcaatcactt ctaaatttga gttaaataac tttacatttt
     1321 gcaatgatga tacacataca cttaggtgcg aaggagaaag tttaattttc tcatcattat
     1381 taaatacacc ttcccatttt ttctttgctt tatcaaagag tttttctatt ttttgcttaa
     1441 gttcagaatc agactctcca taatttctaa actctaagct ctttgttcta tctcttgcac
     1501 cctctagctc atcaaaaagt tttataaata taagcttaaa acattcttca aatacatcaa
     1561 ctccagcatt tgccaacacc tcatcttcca tttctgtaac taaattcttt aaacttcgct
     1621 tttgactttt taaaatatct tctttaatca aatcatcaaa ggtaattttt actttcaaca
     1681 gatccggtaa tgtctggttt gatgcaggaa tatttggaat agattcaaaa taatttggat
     1741 cttttctatg ataatagcta atttctttac cattacacca cacagccata gttgcacctg
     1801 tagcattaca ataacttttt aattgttctt tgctatcttt caactttggc ttttttactt
     1861 ctataatgat gtatgggact gtgatttgga ttttatcaat tatcacaata tcagcccttt
     1921 ttacttcgcg tccaaaatgc acaccaaatt caatttttat catatcttta ggatagttat
     1981 attcatttaa aagcttatcg atataaagct gacgcacaat ttcttctggc gtaagtttaa
     2041 tttctttatc gcggataagg caattagtat agtatataat ttggttattt ttgtttgttt
     2101 tagctataat tttagtttcc aattcagcaa tagctttttt actaaataga tctagcttgt
     2161 aatcactatc ttttaaaatt tcctcaatca tcctaaacct ttaaaaattt tctatcaagt
     2221 ctttaaaaac aaggcaaagt ttttcaaatt cttctatgct tactctttca tcaatagcgt
     2281 gaattctatc attacaaacc ccaaattcca ctacttttac accatatttt gcaaaatacc
     2341 ttgcatcact tgtgccgcct ttagtattaa gctctggcac ttcatgagtg attttttgaa
     2401 cgctttcatt cattttttga acgattttat tatcgatatt tgtcaaaaaa gcttcgcttg
     2461 attgttttag ctctaactca tagtttaaac catgacaaat tttttctaca taacttttta
     2521 catcttctaa gcttgtatca ggggaattgc gaacattaaa cataagtttt aaatcatttg
     2581 gcgtaacatt acacaccccc atacctccgc gaatatcggt aataacaatt tttgaaggac
     2641 taaattcagc actacctgga tcgagatcaa aacccgctaa aagctttaaa actggtgcaa
     2701 aatcatgcac aggattgata catttttcag gataagcaac atgcccttgt tttccacgga
     2761 ttaaaagttt tccattgata gaaccacgac gccctatttt aatactatcg ccgatttttt
     2821 taacacaggt tggctcggca accacagcat aatcaggtaa catatctctt tcttgcatcc
     2881 attctaaaac agccttagtt ccatatatag cttcaccttc ttcatcactt gttaaaataa
     2941 gactcagtct tgctccttta aaatctacat tctttgccgc atctacaaag gctgctactc
     3001 cgcttttcat atcttgagca ccccttgcat agataaagcc ttctttttcc ataggcacga
     3061 aagcatcgct actccaaccc tcgcctgcag gcaccacatc tacatgccca ccaaaagcta
     3121 aatgctcgcc ttcatcttta aattttttag tgagtaaaag gtttttaatg ccttcttttt
     3181 ctatgaaaaa agcttcaaaa tcactcagtt ccatagcgat gaaatttaaa gctccatcat
     3241 catttggcgt aacagattta aattttaaaa gttcgattaa aaattctttt gcattcattt
     3301 tttatcctaa gaaagtttta tataataaat taagagcaaa atactctata attatagctg
     3361 aaattatatt gattataaaa acaacttttg cactaaaaac ataactatat cttgccacca
     3421 caaaggctaa agcacttacc caaaaaagta tagccacaac aagtcctaaa gtcatcaaat
     3481 aagcatgatc gctgcttaaa accacacttg cagcactaag ccaaaatcct atcacaaaag
     3541 gatttgaacc atttaaaaaa gctcctttaa tataactttt caaaagactt tctttaaatt
     3601 ctttatgctc taaatttaag ctttctttct tttttcttag catcaaatac gccatataag
     3661 ttaaaaaaca aaaaccaaaa atcgccaaaa aacgcataaa aatgacattg tctaagaaat
     3721 ttaaaagccc aaattgaagc aaaaaaagat aaagcatatc tatactaaat gctccaagtc
     3781 ctacagctat ggaattttta aaagctttta gtgcataagt taaaatcaaa atatttacag
     3841 gtccaaaagg cacactcact ccaaagccca aaaaaactcc acttaaaaaa gaatcaaaca
     3901 ttaccatctt tcataaaatt ttctatatca agtgcgattt tatcaatagc gcttataata
     3961 tcttctatat agattttatc aaaatatcgc tctaaattca catctttttc ataaatattt
     4021 aaaatacttt tttcacacat tgaagcatac tgccccacag gcaaaaccgc cccacttgtg
     4081 cctatgctaa taaataatga agtttgatga agtaaagaat aaagcgtagc ataagcagga
     4141 gcttgctctt caaacatgac tatattgtgt cttaaatcct tacttttgca ttttgggcat
     4201 tgtttatctg tgaatttttc atagcctata ttaaaaattc cttcacattt taggcaacga
     4261 agttcgggca aaaagccatg caaatgtact acatctttac accctgcacg ctctagcaaa
     4321 tcatctacat tttgcgtgat gacaaaaagg tttttacccc atttttcttt taactgtgcg
     4381 attttttcat gggcgtgatt tggctttaca ttttgaagtt gtgcccttct tgcatcgtaa
     4441 aaatcaagta cttttttagg attttttcta aaacctgttg cagagcaaac ctccatcaca
     4501 tcgtattctt cccaaagtcc atcattatct ctaaaagttt taagcccact tggagcagac
     4561 aaacccgctc cgcttaatat cataatgttt ttcatcgcta aaccttataa aatttacaaa
     4621 gtttagcgaa aaatgcttta agaaaataaa tatttttgca agattttttc tttttctttt
     4681 tctaatctat caagttctat tttatattca ttgatttttt tctcaatctt gtcagttata
     4741 tctgctattt gatcttgaaa ttctaaagaa ggaagtttaa ctcttaatgc ttttattcta
     4801 tctattgaag ctctaagttt tcttgaaaat ccttgttttt taccagcttc atttaaaata
     4861 aaacttatgt atttagcatt tatttttgta tcatcaaccc ttaatacccc acaatgatca
     4921 gttggataaa actttttatt ttttggtata aatcccacca tccaatctcc atctataccc
     4981 cacaaaacag aatcattatc ataatcttgc aaaatttctt tattaacaaa tccaaatact
     5041 tccaacacat ttgcactata aacaggaatt tgtccatttt caagcagctc attatttaaa
     5101 actctttttc caatacttag tttaaaaatt ggatttgata aagcatattc tttaattgtt
     5161 ttattaaatg atgataaaaa ttcactatcc aaatttattt taca
//
LOCUS       DAPIWV010000116         5175 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.117, whole genome shotgun sequence.
ACCESSION   DAPIWV010000116 DAPIWV010000000
VERSION     DAPIWV010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5175
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.117"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..302)
                     /gene="yaaA"
                     /locus_tag="RJ272_001535"
     CDS             complement(<1..302)
                     /gene="yaaA"
                     /locus_tag="RJ272_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDV7382587.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAIMLYTGVSYEYLNFKILDKK"
     gene            complement(394..1512)
                     /locus_tag="RJ272_001536"
     CDS             complement(394..1512)
                     /locus_tag="RJ272_001536"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HDV7382588.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFI
                     NKLSSDSYTLSFDNSINKQENNYIDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLNINNQDATEALKIILPFIMFSMLMGGASF"
     gene            1732..2571
                     /locus_tag="RJ272_001537"
     CDS             1732..2571
                     /locus_tag="RJ272_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7382589.1"
                     /translation="MKKILLSVLTAFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            2611..3858
                     /locus_tag="RJ272_001538"
     CDS             2611..3858
                     /locus_tag="RJ272_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382590.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYKICSIFSIAFIIFGMLFGFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(3841..5109)
                     /locus_tag="RJ272_001539"
     CDS             complement(3841..5109)
                     /locus_tag="RJ272_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDV7382591.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNLLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNNWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKIRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
BASE COUNT         1563 a          704 c          849 g         2059 t
ORIGIN      
        1 ctttttttat ctaggatttt aaaattaaga tattcataac ttaccccagt gtaaagcatt
       61 atagcttctt gagtgggagc ttgttttaag tcgtgtttaa atttatcaat ttcattttcg
      121 tttttaatgc caaaaagttc ttgtaaattt tttaaacttg catttttgat aaattctcca
      181 taatgcttta aagcttccat tctataagga aataattctt taaatataaa tgagttttca
      241 tcgatgggat tttttgtaca attttcattt ttgctttcac taggggagaa taaaattttc
      301 attttagcct tttttgttaa tgttatgaaa acattaagag caaagaattt aatcttgctt
      361 ttaatgtttt tgaagttttt atcattttaa aatttaaaat gacgctccgc ccattaacat
      421 agaaaacatg ataaatggaa gtataatttt taacgcttct gtggcatctt gattgttgat
      481 gttcagtttt tctatactgt cgattccctg tgtgctatag tcactaacag ggatgttttt
      541 aaattttaaa tcaagattga gtttataatc atcgttttga gtgatattgt ttaaaatagc
      601 taaagcttta tcaaagatta atgcttgttc ttcattttga ctttgagttt ttaaggtttg
      661 taaattttcc ttagcagttg ttatatagct actaaatacg ccttcggttt taagagttga
      721 atcaatttta aaattgttta agatgatgta tttttggatt gtattgctaa aatctgaagc
      781 ttgttcgtag tttgctatat taagaagttc attgatagct tgttcatcca tagctaaagt
      841 ttgagtgtta aattttatac ccttagaatc aaggtaatta agcaaatctt cttttagatt
      901 tatatttaaa tttgtattga aatttaattt tgcgttataa aattttatat caagattatc
      961 tatataattg ttttcctgtt tgttgatgga gttgtcaaat gataaagtat aagaatctga
     1021 gcttaattta ttgataaaag agctgatttt tggatcttgt tgaaataagc ttgcattgat
     1081 gtcgctaaca actttttctc caagtttaaa atcttcaaaa accaaatttg attgtatgct
     1141 tttttggttt ttaaaaagat cgttgtaata ttctttaatg ctaattgatg tatttgcttc
     1201 gcctttgtaa atttcatttg agcgaatttt gatatttttt gcttgaaata gttcttgata
     1261 ctcatcgtta ttatcttttg caagagtttt gaaatttgga cttaaacacg ctataaaatc
     1321 accatctgca ttgcatttaa aatcagaaaa ttcaattttt attccagaat cctgagaaag
     1381 gcttgcaatt tcttgtttaa ctgtttgatt tagttgattt tcatattttt taactgtttt
     1441 ttcatctatg gaatttccgc aagctgaaaa caaaacagct attccaatag agagaaaaat
     1501 accttttttc atagttttct ccttaaaaat ttaaaaaaag attatatctt ttttttactt
     1561 aaaatttaaa caatgctaaa agagagtgtg agattaatta catttttaca cataggaaaa
     1621 tctttttagt ttgtttcaaa tgcattattt ataattttaa gtataattaa ctttgcaatt
     1681 attatatatt tttgcaatag ctttaagctt atttttaaag aaaggaaatg tatgaaaaaa
     1741 atacttctaa gtgttttaac ggcctttgtt gcagtagtat tggctgcttg tggaggaaat
     1801 tctgactcta aaactttaaa ttctcttgat aagatcaagc aaaatggagt tgttaggatt
     1861 ggggtatttg gcgataaacc accttttggt tatgtggatg aaaaaggaaa caatcaaggc
     1921 tatgatatag ctttagctaa acgcatagca aaagaacttt ttggcgatga aaataaggtg
     1981 caatttgttc ttgttgaagc tgcaaatagg gttgagtttt taaaatcaaa taaagtagat
     2041 attattttgg ctaattttac tcaaactccg caaagggcag agcaggttga tttttgctcg
     2101 ccttatatga aggtagcttt aggcgtagct gtaccaaagg atagtaatat aactagcgta
     2161 gaagatttaa aagataaaac cttgctttta aacaaaggca caacagcaga tgcttatttt
     2221 acgcaaaatt atcctaatat taaaacttta aaatatgatc aaaataccga aacctttgcc
     2281 gctttgatgg ataaaagagg cgatgcttta agtcatgata ataccttgct ttttgcttgg
     2341 gtgaaagatc atcctgattt taaaatgggt attaaagagt taggtaacaa agatgttatc
     2401 gcaccagcgg ttaaaaaagg cgataaagaa cttaaagaat ttatcgataa tttgatcatc
     2461 aaactaggcc aagagcagtt ttttcacaag gcttatgatg aaactttaaa agctcatttt
     2521 ggagatgatg ttaaggccga tgatgtagtg attgaaggtg gaaaaattta ataaagggct
     2581 ttttgccctt tagttgattt aggataaaat atgcaaaaaa aatacaaaaa tattatttat
     2641 gcttctttgg gtggaatttt agaattttat gattttgtgc tttttgcctt ttttttggat
     2701 atttttgcta aggtattctt tccacaaaat gatgcttttt ggatgcagat aaatgcttat
     2761 atagcctttg gtgctgctta tttagcgcgt ccttttggtt ctattgtgat ggcacatttt
     2821 gctgatagat atggaagaaa gaatattttt tatatttcta tgcttttgat ggttttgcct
     2881 agttttgctt tagctttttt accaagttat gaaagtatag gtatatttgc tactttgatt
     2941 ttatttacta ttcgtatttt gcaaggttta gccgttggaa ctgaggtgag cggagcttgg
     3001 atttatgtga gcgaatttgt taaagggcgt caaattcctt tggctcttgg ttttatttca
     3061 gcgactttaa ccataggttt attgctagga aatattgcca ctttgggcat aagatcttat
     3121 tttaccccag aagaagttca aagctatgct tggagaattc cttttatcat aggaggattt
     3181 tttggaattt tagctttgtt tttaagaaat aaactcagcg aaactccaga atttataaaa
     3241 gttcaaaatg aaaagaaaat tttaagtttt ccattgtttg aagctttgaa aactcataaa
     3301 atgagtatgc ttgtttgttt tttaatgacc atggttttaa caagcggtgt ggcaactttg
     3361 atgattttgc ctaagtattt tgaaagtctt ttagctatga gtaaaacttc tgctttatgg
     3421 gtgcaaaatt ttgctatttt agcggtgatt tttggagctt tatttcaagg ttttttagca
     3481 agcaaatggg gaagctataa aatttgctct atttttagta tagcttttat tatctttggt
     3541 atgctttttg gtttttatga tgagaatttt ttattttatt ttttactggc ttgttttgca
     3601 caaggtatta ttactttcgc gcctgttttt atgacgcaaa tttttaaaag cgaacttaaa
     3661 tttagcgggc ttagttttgc ttataatatt tcttatgcga ttttaggttt tttaacccct
     3721 tttatagtta atgcttttta taaagagtat ttaggtattt atcttgctat agtgggatct
     3781 tgctccttgc tttgcgtgtt tttgttaaaa cgcgtttttg caagaagtaa gattaaagaa
     3841 ttaagcattg tcttttaaaa cttcaaaaac aaccttagat attttttcaa ctgaagcgat
     3901 ttcacaatgc tcatcagttg aatgaggatt atggatattt gggcctatag aagcgcataa
     3961 aagctcttgt tttttctcta taatgccaca ctcaagccct gcatggatag ctgaaacttt
     4021 ggcattaggc gatacttttt taagtgcttt aaaaaccatg tcgctaagtg cgtttggttt
     4081 accttcccaa ggtggataga aattaaaact tcttatttta aaatcaaaag ctttgaaaaa
     4141 ttctaaagtt tcaaattcta cttgcttaag tccatcaagt atattagatc ttgcaaaaag
     4201 tgcgaatttg atttggttat cttgcattct taaagtagct aggttaatgc ttgtttgaac
     4261 tatatctaga ttttcatcat aagctctaac tccatgagtg aaagaattta taaggcttaa
     4321 aagtttttta ctttgatcgc aaatttcaaa ttcattttct tctttaaatt cgcattttat
     4381 ccagttatta ctctttactt catctttaaa atgcactaaa gctttggcgt gtttaggtat
     4441 agaattgatt ctttctccgc cttcaaaaga aatgatttct ccttcatttt cttgtatgaa
     4501 tttagccatt tctttgatgg aacttttttc attgcgtatg atatttatgc ctgagtgtcc
     4561 acctttaaaa ttttgcgcac aaagctcgta aattttaccc ttttttctaa gggtattaaa
     4621 agacaaactt gcttctatat ctactccacc tgcacagcct atcatgatct catcatcgct
     4681 ttcatgatct aaatttaaaa gcattttaga ttctaaagtg tgctcgagta aattcactcc
     4741 catgagtcct acttcttcat cgtttgtaaa aagacattct aaattttcaa attcagccat
     4801 agcactcatc atgatggcta tacctatgcc attatctgca ccaagacttg aatttttggc
     4861 tcttaaaaag ccattttctt cataaacttc taagtttggt gcatcgccca tacagaccat
     4921 atcataatgg ctttgtagac aaatttttgg tttgcctttt atggcatgga tatttcctgc
     4981 cttatctaca ctcaccttaa agcctttatc tttggcgtaa gagcttaaaa attctttcat
     5041 ttgttctgtt tcataactgc aatgaggaat tttgcataat tgtttaaaat tttctataac
     5101 attttgcatt ttatctcctt tgttttgata aaattatggc atatttttta aaatttaaag
     5161 gcaaaatgat taaaa
//
LOCUS       DAPIWV010000117         5069 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.118, whole genome shotgun sequence.
ACCESSION   DAPIWV010000117 DAPIWV010000000
VERSION     DAPIWV010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5069
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.118"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..632
                     /locus_tag="RJ272_001540"
     CDS             <1..632
                     /locus_tag="RJ272_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382592.1"
                     /translation="NKELQANISDFDDLPVVEEQEKEMDFDDLPEDAEFLGQAKDNEE
                     SEEVLEEFAPVVEEDVQDEMDDFTSNLSTQDQIKEELAQLDELDYGIDSDNSSKVLED
                     FKDEPILDDKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVT
                     KDDNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
     gene            629..1252
                     /gene="gmk"
                     /locus_tag="RJ272_001541"
     CDS             629..1252
                     /gene="gmk"
                     /locus_tag="RJ272_001541"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDV7382593.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFKDELYFSISSTTRKP
                     REGEKNGVHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQDALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            1254..1493
                     /locus_tag="RJ272_001542"
     CDS             1254..1493
                     /locus_tag="RJ272_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HDV7382594.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            1505..3097
                     /locus_tag="RJ272_001543"
     CDS             1505..3097
                     /locus_tag="RJ272_001543"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDV7382595.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDNYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSLK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYDKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEVKNKMEH"
     gene            complement(3115..3423)
                     /locus_tag="RJ272_001544"
     CDS             complement(3115..3423)
                     /locus_tag="RJ272_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7382596.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(3423..3764)
                     /locus_tag="RJ272_001545"
     CDS             complement(3423..3764)
                     /locus_tag="RJ272_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7382597.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            3873..4580
                     /locus_tag="RJ272_001546"
     CDS             3873..4580
                     /locus_tag="RJ272_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDV7382598.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFARKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            4590..>5069
                     /locus_tag="RJ272_001547"
     CDS             4590..>5069
                     /locus_tag="RJ272_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7382599.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
BASE COUNT         1914 a          649 c          962 g         1544 t
ORIGIN      
        1 ataacaaaga attacaagct aatataagcg actttgatga tcttcctgtg gttgaagagc
       61 aagaaaaaga aatggatttt gatgatcttc ctgaggatgc tgaattttta ggtcaagcaa
      121 aagataatga agaatcagag gaagttttag aggagtttgc tcctgttgtg gaagaagatg
      181 ttcaagatga aatggatgat tttacttcaa atttgagtac tcaagatcaa atcaaagaag
      241 aactagctca acttgatgag cttgattatg gtattgatag tgacaatagt agcaaggtct
      301 tagaagattt taaagatgaa ccaattttag acgataaaga attaggaaca aatgaagagg
      361 aagtggttgt gccaaattta aatataagtg attttgatac attgaaagaa agtgatatac
      421 aagaagctct tggagaggaa atcttagaaa aaaatgaaga gcctatagta agtgatgtaa
      481 ctaaagatga taatagcgaa gagatagtta atgagcttag ccaaagcata gcaggagcga
      541 tcacttcaag tattaaagat gataccttaa aagctgctct taagggtatg aatatgaata
      601 taaatataaa cattagtttt aaagaggatt gaaattgcaa ggttttgttt tgttgatttc
      661 aggtcctagt ggtgctggaa aatcaactct tttaaaaaaa ctttttgatg aatttaaaga
      721 tgagctttat ttttctattt cttcaacaac tcgcaagcca agagagggtg aaaaaaatgg
      781 agtgcattat cattttatat ctcatgaaga atttcaaaag ggtatagata gtgatcattt
      841 tctagaatgg gctagagtgc atgaaaattt ttatggtact tctttaaagc acacccaaga
      901 tgctttagat aatggaaaaa tagttgtttt tgatattgat gtgcaaggat ttaaaatagc
      961 cagaaaaaaa atggctgata agattgtttc tgtttttatt actacaaaaa ataaagatga
     1021 gctaaaaaaa agacttatta agcgaaatac tgatacaata atacaactag aaaaaagatt
     1081 acaaaacgct agcgatgaaa tgaaagagct tagcgagtat gattatctta tcattaacga
     1141 tgagttaaag caaagttatg aagcattgcg agcgatttta atcgcccata aatttagaac
     1201 caaagggcag aatctagggc aaattcaaaa tatttggaat gaaggagaat aaaatgggtg
     1261 gttggtcaag tccaagtcat tggttgatta ttttattgat tgttgtattg ctttttggag
     1321 caaaaaaaat tccagaactt gcaaagggtt taggtaaagg tattaaaact tttaaagatg
     1381 aaatgaataa tgatgatgaa gtagcaaaaa atactcaaaa aatagaagaa aataaaaaca
     1441 caactaataa tacaaatgct gatgcaagta tagacgaaac aaaaaaagct taaggtttag
     1501 tcttttgaaa agtattattt ttaatgaaat taaaaagatt ttagagtgtg attttgcgct
     1561 tgaaaatcca aaggataaaa atttagcaca ttttgctacc cctttggctt tttcactggc
     1621 taaggaatta aaaaaatccc ctatgttgat cgctagcgac ttagcgagca aatttcaaaa
     1681 tcatgattgt tttgaatcag ttgaagctgt aaatgggtat ttaaatttta gaatttccaa
     1741 aactttttta aatgaacttg caaatcaggc tttaacaaat ccaaatgatt ttactaaagg
     1801 agaaaaaaaa caagaaagtt ttttgcttga atatgtgagt gcaaatccta ctgggccttt
     1861 acacatagga catgcaagag gcgctgtttt tggagacacc ttaacaagac ttgcaagaca
     1921 tttgggctat aaatttaata cagaatacta tgtcaatgat gcgggtaatc aaatttattt
     1981 actagggctt tctattttac taagtgtgaa agaaagtata cttcatgaaa atgttgaata
     2041 tccagagcaa tattacaaag gcgagtatat agcggattta gcaaaagaag cttttgaaaa
     2101 atttggtaaa gaatttttta gcgaagaaaa tatccctagt ttggctgatt gggcaaaaga
     2161 taaaatgctt gttttgatta aacaaaattt agaacaagca aagattaaaa ttgacaacta
     2221 tgtaagcgaa agatcgtatt atgatgcttt aaatgcaact ttagaatctt taaaagagca
     2281 taaaggaatt tacgagcaag aaggtaaaat ttggcttgct tcgtctttaa aaggagatga
     2341 aaaagatcgt gttattatcc gtgaagatgg ccgtgggact tatttagcag cggatatagt
     2401 ttatcataag gataaaatga gtagaggcta tgataaatgt atcaatattt ggggagcaga
     2461 tcatcatggt tatatcccta gaatgaaagc tgcgatggaa tttttgggat ttgactctaa
     2521 taatcttgag attattttag cacaaatggt ttccctactt aaagatggag aaccttataa
     2581 aatgagtaaa agagcaggaa attttatctt gatgagcgat gtggttgatg agataggaag
     2641 tgatgctttg cgttatatct ttttgagcaa aaaatgcgat acgcatttgg aatttgatat
     2701 tagtgatttg caaaaagaag atagttctaa tcctgtgtat tatatcaact atgcacacgc
     2761 tagaattcat caagtgtttg ctaaagctgg taaaaaaatc gatgatgtaa tgaaagctga
     2821 tttacaaagt ttaaatcaag atggcgtaaa tttgcttttt gaagctttga atttaaaggc
     2881 tgttttaaac gatgcttttg aggctagagc tttgcaaaaa attcctgatt atcttaaaaa
     2941 tttagctgca aattttcata aattctacaa tgaaaataaa gttgtaggct ctgcaaatga
     3001 aaatgatttg cttaaattat tttctttggt tgctcttagt attaaaaccg cattttcttt
     3061 aatgggtatt gaagtaaaaa acaaaatgga acattaaaac agcattttgc tgttttaata
     3121 atttagcaaa aatactgcta ttatcacgat aatgatacct aaaattccta ttttgtttaa
     3181 tttttcttta tataaaatcc atccaccaag acaagttcct atgatgccta tagcacccca
     3241 agttgagtaa gctatgctta aaggaacata ttttaaagaa aaagaaagta gaaaaaaagc
     3301 aagtatagca ttgacaatcg cagctaagcc ccaaatttta ttcttaaaac catctgattt
     3361 ttttagcaat aaatttgcta cgatatctaa caatgccgat agaacaataa taaaaatata
     3421 cattattctt taacctcgcc tatattaatc atgataattc caacgataga aagaataatg
     3481 cctagaattt gagttaaggt taaactctct ttaaaaacta taaaagaaac taaaagtata
     3541 agaataatcc ctaaaagttc ccatacagca taggctatgc ctacttgaat ttttttaatc
     3601 gccttgccca taaaaaaata agaaaaagct ataaataaag ccataaatat atagcctaaa
     3661 atttgatttt ccatttttaa aaaactagta cctaaaactt caaatacaat agcagcaatc
     3721 aagaaaaacc aagcaacaaa aagttctttt tttgcgatat tcaaaaagct tctccctaaa
     3781 aataaatggt aaaatcatac catttaaagc tttaattagc ctttttagtt tatactttta
     3841 agtttaaaaa tctttaaaga aagtgagaat ttatgggacg agcgtttgaa taccgaagag
     3901 cttctaaaga ggctagatgg gataaaatga gtaagctttt tcctaagctt gctaaagcca
     3961 tacaagtagc tgctaaagaa ggtggcactg atcctgatat gaatccaaaa ttaagaagtg
     4021 ctatagccac agcaaaagca aataatatgc caaaagataa tatagatgcg gctattaagc
     4081 gtgcgagtgg aaaagatagc gcagatatta aaaacattca ttatgaagga aaagctgcac
     4141 atggagcttt ggttatagtt gaatgtatga gcgataaccc tacgcgcacc gtggctaatg
     4201 ttaaagccat ttttagcaaa aatggtggag aagttttaca aaatggatct ttaggcttta
     4261 tgtttgctag aaaagcggtt tttcatcttg aaaaatttgc aggagattta gaagaattag
     4321 aacttgattt gatcgatgca gggcttgaag aattagaaca aaatgaagaa gagttagtaa
     4381 ttagcggtga ttatactgcc tttggtgagc taagttctgc tatagagact aagggtttag
     4441 ttcttaaaaa agcaggactt gagtatatac caaacaatcc tgtaagcttt agcgaagaac
     4501 agcttagcga tatagaaaaa cttttagata agttagaaga tgatgatgat gttcaagctg
     4561 tttatacaaa tatagattaa ggagaaataa tgataaaaac aatcgacaca agcaaagtaa
     4621 atgaatacaa atttgctctt atagaaactg aaaaaggcac aatgaaatta aaactttttg
     4681 gcgatgaggc tccgcaaacg gtttgtaatt ttgctacttt ggctaatgag ggattttata
     4741 aagatttaaa ttttcatcgt gtgatcccaa attttgtcat acaaggaggt tgtccacacg
     4801 gcaatggtgt aggtgggcct ggatatgaaa tcatttgcga atgtgatgat caagagcata
     4861 aacatgagcg tggaacctta tctatggcac acgcaggacg cgatacgggt ggttctcaat
     4921 ttttcatttg tcacagccct caagctcatt tagatggggt tcatactgtt tttgggcaaa
     4981 ttgatccaaa agatgaagaa agtttagaag ttttagactc tatacgccaa ggagataaaa
     5041 ttttagacat aaaaatttgc gataaaatt
//
LOCUS       DAPIWV010000118         4996 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.119, whole genome shotgun sequence.
ACCESSION   DAPIWV010000118 DAPIWV010000000
VERSION     DAPIWV010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4996
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.119"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(24..533)
                     /locus_tag="RJ272_001548"
     CDS             complement(24..533)
                     /locus_tag="RJ272_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDV7382600.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(533..1063)
                     /locus_tag="RJ272_001549"
     CDS             complement(533..1063)
                     /locus_tag="RJ272_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDV7382601.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQFQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1075..2163)
                     /locus_tag="RJ272_001550"
     CDS             complement(1075..2163)
                     /locus_tag="RJ272_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HDV7382602.1"
                     /translation="MPADLNDYFNKKNRNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(2175..3089)
                     /gene="ilvE"
                     /locus_tag="RJ272_001551"
     CDS             complement(2175..3089)
                     /gene="ilvE"
                     /locus_tag="RJ272_001551"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HDV7382603.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQNTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     PVTKKLQDAYFNVVYGRNEKYASMLTYI"
     gene            3264..3470
                     /locus_tag="RJ272_001552"
     CDS             3264..3470
                     /locus_tag="RJ272_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDV7382604.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
     gene            3467..3922
                     /gene="bcp"
                     /locus_tag="RJ272_001553"
     CDS             3467..3922
                     /gene="bcp"
                     /locus_tag="RJ272_001553"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDV7382605.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDETGKIVQIYSNVRVKDHALKVLESL"
     gene            3922..>4996
                     /locus_tag="RJ272_001554"
     CDS             3922..>4996
                     /locus_tag="RJ272_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDV7382606.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECELYRVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQE"
BASE COUNT         1698 a          683 c          819 g         1796 t
ORIGIN      
        1 tgttttaaaa ctatttaaca atatcaaata cattttaagg tgtgataaaa ttcaggatta
       61 ttaaaagttg gaggaaaagg aacgctagct ctaaattctt tataggtatt acccgggagt
      121 gtgtctatga tttctatagt ataagaaaca cttgtatttt gcattttagc gttacggata
      181 tttttatcat tgaaaatttc acctcctact tgttgttggt ttaatatgct aagtatcaaa
      241 tagcattttt tgatttcaaa tttagtaaga ttttgaactt ttccacttac tataacgctt
      301 tcatgtctta gatctcttgt gtaggttagt ttgctaagat cggcttgagt ggtgaattga
      361 ttgattgtca gaaaaataga atatatcaaa agtgcggtaa aaatagtagc tatggtataa
      421 gaaatcaaag ccatttcttt ttgtttgact tttagaaaga ttaaaataca aatcaaggca
      481 aagcaaataa gtaaaatgat aaaagctata atatgaaaaa tcgtaaaatg cattaaaaac
      541 actccgaaac taagcgtatg gtatagttat tttcatagtt aaaattttca aaagcaattc
      601 tttgaaattg ggttgcgttt ttctttagat ctttaatttc tctacttttt tgtctaaaag
      661 ggataaattt ctttttatat tcttctatga tattatcatt aggtatttta tctgcaaaaa
      721 ttttagctgt aattttacat tctttaaaat tattttttga attatttgta atgttaaaat
      781 caacaattaa atcatttgag ctttgtatca ttttttgatc tgtaatagcg atttttcgag
      841 ttcttacttc attgtctatt agtttatacc catagatata aactaaaaaa caaataataa
      901 tatcaaatgc aataataaaa agtgctgcta taggtctatg gcgtaaaaat acgcaaagaa
      961 gtaaaacaca agtgaagaga aaaaaaacta ataaaatcag catataatct actaaatata
     1021 aatgagtagt gtaaaaaagc acgatttctc ttagtttctc cacttgcgta tcctttagtt
     1081 catgttggca gcactttgct ttttagcatc tttagtatca acccaaatgt ttggcactgc
     1141 tccacctgga gttaagaaaa ttttagcatc ttgattgact tttaaggctt cattaaattc
     1201 tttttgagtt tcaatttgtt ttaaatttag caaaggggtg tttaagctgt ttgcgatttc
     1261 tttattagaa taagcttgtg catctgcttc tatcttaaca gccatagctt tacctttggc
     1321 gctgattatg gttgcatttg cttccccttc agctaaagca gcttttttta aggcttcttg
     1381 attagctctt tctacttcat atttagttct ttcagcctct tgttttgcaa tttgcacgcg
     1441 ttcgatttgt tcttttactt ttgaaggtaa aataatttct ctaagttgta cagcgcgaag
     1501 ttctacaggt tcatttggtt gggcttctat ggtttttctt ataccttctt ctatttgagc
     1561 ggctattgta ttacgattag taggaagttc ttcggctgta tattttccta caacacttcg
     1621 cactacatca cgaacaactg gatcgataat tttattttcc caatttaagc tccaagtagc
     1681 tatagtttga ggaacttgca gaggatttaa gcggtattgt actgtaacat caatagatac
     1741 aggcaatcca cgagagtcaa gtacagaaat gctattttta ttaataacac ctgaacctga
     1801 agataaattt tcattacttc cctctataga agcatagttg atttgtctta ctctagtatc
     1861 gattatggtt attttttgta caaaaggtaa gaaaaagtga agtcctggtt ctaatggatt
     1921 tgggtcatat ttacctgttg ttgatttaat ccccatttcc ccagaattta tcaccataaa
     1981 aggttttgca acgattaaaa ataagataat aataatcacc ccataaacaa atggagagaa
     2041 tttcccaaaa cctttaaaat taaattctgg tgctttgaaa ttgaaatttt gacggttgtt
     2101 gtttccgtta ttgttagaat ttctattttt tttattgaaa taatcattta aatcagctgg
     2161 catttatttc ctttttaaat ataagttagc atagatgcgt atttttcatt gcgtccataa
     2221 actacattaa aataagcatc ttgaagtttt ttggttacag gtcctcttaa accatttcct
     2281 attattcttg catcaatatt gttaataggt gtgatttcag cggctgttcc ggtaaaaaat
     2341 gcttcatcag cagtataaac ttcatctctt gaaattcttt ggcgaagcac agtgatacca
     2401 agatcatgag ctattttaag cactgtattt tgagtaatgc tttttaaaga aaaatcattt
     2461 ggaggtgtga ttaaaacccc gtcttttaca ataaagaaac attctcctgt tccttctgcg
     2521 ataaaacctt cttcatcaag cattaaagct tcttcatagc ctgcttcaat agcttcaaat
     2581 tttgcaattt gagagttaag ataatttgca cttgctttag cttttcccat gcatgattta
     2641 acactatttc ttgcaaaaga cgaaattttt acttttatgc ctttttctaa accttcttct
     2701 ccaaggtaag caccccattc ccaagctgca attccaactc ttacaggagc ttttatatga
     2761 taaagtccca taactccatc gcctaagaaa atcaaagggc ggatatagac attgctttta
     2821 aagttgtttg cttttaagag ttcaatttgt gcattttcaa gctctttttg agaaaaagga
     2881 caatttaaaa gagtaatttt tgcagactct aaaagtcttt tggtgtgatc ttcaagtctg
     2941 aaaattgcta agcctttatc tgttttatag gctctagttc cttcaaaaac agcattgcca
     3001 taatgcaaag aatgggttaa aaagtgcaaa gttgcatctt taaaatcaac taattttcca
     3061 tccatccaaa ttttatctgc tgagatcatt ttttaccttt tatagttgtt tatttcttaa
     3121 aaaatattat tttaagaata aatcgggatt ttatcaaaaa tatactaaca ataagctttt
     3181 attaaattaa ggttttttat taaaaaaaat attaggtatt ttttgaaata attatgaaaa
     3241 attatcgtta aaaaggagaa attatgccat tagtaaatat taaattagca aagccgtctt
     3301 taagcaagga acaaaaagcg gagcttatag ctgatattac caaactttta agcacgaaat
     3361 ataataaaag taaagaaaga gttgtggtgg ttttagaaga tgtagaaaat tatgatatag
     3421 gctttggcgg agaaagcgtt gaagctatca aagcaaaggc aattaaatga gtttaaacat
     3481 aggagataaa gcacctcagt ttgagctttt aaatcaagat ggggtaaaaa tagcattaaa
     3541 agattttatt ggcaaaaagg tgattttgta tttttatcca aaagataata ccccaggttg
     3601 cactacagaa gcttgtgatt ttagcgcaaa ttatgataaa tttggtggta aaaatgcggt
     3661 gattattggt atcagtcctg atagcgtggc aagtcatgaa aaatttatct ctaaatttga
     3721 tttaaaacat attttactta gcgatagtga aaaagaagtt gctaaagctt atggagcttg
     3781 ggggcttaag aaaaattacg gaaaagaata cgaaggtctt attcgttcta cttttgttat
     3841 cgatgaaaca ggtaagattg ttcaaattta tagtaatgtt cgtgtaaaag atcatgcttt
     3901 aaaagtgctt gaaagtcttt aatgttagtg catatttgtt gcagtgtgga tagtcattat
     3961 tttattgaag aacttagaaa gacttatcct gatgaaaaaa ttataggata cttttatgat
     4021 ccaaatatcc atcctttaag cgaatacgaa ctaagatttt tagatgtaaa aagatcttgt
     4081 gataaacttg gtattaagct ttataaaggt gagtatgagt atgaaaaatg gcttaatgct
     4141 gtgcgtggtt atgaagatga gcctgaaaag ggtgcaaggt gtgaaatttg ctttgatgta
     4201 agaatgggat ctagtgttaa atttgctgct aaaataggag aaaaaaagct tactactacg
     4261 cttttaacca gccctaaaaa agatttagaa cagttaaaaa atgctttaca aaaagaatgt
     4321 gagctttata gagtagagtt tttagctcct gattttcgta aaaatggcgg tactcaaaga
     4381 cagtttgctt tagcaaaaaa ggaaatgctt tatcatcaaa actattgcgg ctgcatttat
     4441 gggcttaaaa aacaaaaaca agataagaat tttattgatg aattaatgtc tcctgtaaat
     4501 aagcaaattt tacctgcaag tatagaagca agaatagctc tttataaaaa agtagtttta
     4561 tgggaaaaaa aaggtataaa atttgaaatt ttaagagaga aatttttaaa ttatcgtctt
     4621 ttaagtgctt tgataaaatt agataaaaag cccgttaaat ctcatatttt attttattcg
     4681 cattttaaaa acgcttatac aagattttct ttggatgagg aaaatttaaa acaaaattta
     4741 aaagaaggct tttatagaag tactaaagat gaaatagttt tagtggaatt ttggcgtttt
     4801 aatgcatttt ttaaaaacaa atggaaaaat tttgaagatt ttttaaaaaa acctttaagt
     4861 gttcaagcag aaattaaatg gcgtaataaa ttgtttggaa cttataatct tagtcctatt
     4921 atcatcctcg aaaatatttt accttcaaga tatgaagtga tagcaaaaag tgaaatttat
     4981 catgataatc aagagg
//
LOCUS       DAPIWV010000119         4836 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.120, whole genome shotgun sequence.
ACCESSION   DAPIWV010000119 DAPIWV010000000
VERSION     DAPIWV010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.120"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..553
                     /locus_tag="RJ272_001555"
     CDS             <1..553
                     /locus_tag="RJ272_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7382607.1"
                     /translation="YTKPKEKLIIFASTHKDEEELLLDHFKLEENEKLIIAPRHPERF
                     KEVENLLLNKGLEFEKFSSLKDENKKFAKKILLLDALGELVNFYAISDVVVLGGSFIE
                     GIGGHNPIEVAYFDNVLISGKFIHNQKALFEEVENVYFCENLKDLNDKIHYLNLKVKI
                     SKKENLDLIIQTIQKGIDARKSL"
     gene            534..1286
                     /locus_tag="RJ272_001556"
     CDS             534..1286
                     /locus_tag="RJ272_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7382608.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLTKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            1354..2691
                     /gene="ffh"
                     /locus_tag="RJ272_001557"
     CDS             1354..2691
                     /gene="ffh"
                     /locus_tag="RJ272_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDV7382609.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKVVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIHIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2757..2984
                     /gene="rpsP"
                     /locus_tag="RJ272_001558"
     CDS             2757..2984
                     /gene="rpsP"
                     /locus_tag="RJ272_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDV7382610.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2987..3229
                     /locus_tag="RJ272_001559"
     CDS             2987..3229
                     /locus_tag="RJ272_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HDV7382611.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTAISAYKSKDASSYRVTVKALE"
     gene            3222..3761
                     /gene="rimM"
                     /locus_tag="RJ272_001560"
     CDS             3222..3761
                     /gene="rimM"
                     /locus_tag="RJ272_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HDV7382612.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNTSNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            3758..4462
                     /gene="trmD"
                     /locus_tag="RJ272_001561"
     CDS             3758..4462
                     /gene="trmD"
                     /locus_tag="RJ272_001561"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDV7382613.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLKSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEIFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLKEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            4473..4829
                     /gene="rplS"
                     /locus_tag="RJ272_001562"
     CDS             4473..4829
                     /gene="rplS"
                     /locus_tag="RJ272_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDV7382614.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         1809 a          528 c          931 g         1568 t
ORIGIN      
        1 ttataccaag cccaaagaaa aacttatcat ttttgccagt actcataagg acgaagaaga
       61 gcttttgctt gatcatttta aactagaaga aaatgaaaaa ctcattatcg ccccacgaca
      121 ccctgagcgt tttaaagaag ttgaaaattt gcttttaaac aaaggtttgg aatttgaaaa
      181 atttagttct ttaaaagatg aaaataagaa atttgctaaa aaaattttgc ttttagatgc
      241 tttaggagag cttgtaaatt tttatgcaat ttctgatgtt gttgtgcttg gaggttcttt
      301 catagaaggc ataggaggac acaatcctat agaagtggca tattttgaca atgtattaat
      361 cagtgggaaa tttattcata atcaaaaggc tttatttgaa gaagtagaaa atgtatattt
      421 ttgcgaaaat ttaaaagatt taaatgataa aattcattat ttaaatttaa aagttaaaat
      481 ttccaaaaaa gaaaatttag atcttattat acagaccata caaaagggaa ttgatgcaag
      541 aaaaagctta taaactctta gctttgcaag aaaaaatttc aaatcgtgaa gctaaagatt
      601 tgattgataa gggttgtgtt ttttcacatg gaaaaaaagt tgtggttgct agagctttga
      661 tgagcgataa ggcaagattt aatgtgataa aaaccaaaaa tcctcaaatt atttttgaag
      721 atgataagat tattgctatt aataaacctt atgcttatgt gagtgaagac ttggagaaaa
      781 aatttaatgc caagctttta aatcgtttag acaaagaaac aagcggtgtg attttgcttt
      841 gcaaagatga agattttaga aagctttgta tagaagaatt taaaaaacat agagtttata
      901 aaagttatat tgcggtttta gatggggttt tggctgaaga ggttgaagtg aatgagccta
      961 tttttaccat aaaagcaaaa ggcggggcgt taagtaaagt ttcaaaagat ggtttaagtg
     1021 ccttaagcat cattactcct attatgatgc agtcaaaaaa aaccttaaca aaaatagtca
     1081 ttcaaacagg tagaactcat caaatcagag tgcatgctaa atttataaaa catggcgttg
     1141 taggtgatga aaaatatgct aaaatttcaa gcgatagaat gtatttacat agttatgaaa
     1201 ttaaaatttt tgattattat tttaaggctg agctagataa tagttttgca aaagttggct
     1261 ttgagataaa aaatttagat ttttaaagcc atttaagaaa aaattttgta taatgcaagg
     1321 tttaatttaa aaattttata gaaaggtgat aaagtgtttg agttagttag cgaatctttt
     1381 aaatcagcga ttaataaatt acgttttgtt gatgatgaaa aagcacttaa gaacgcttta
     1441 gaaaccttaa aaaaagctct tttaaaagca gatgttcacc ataaggtaac taaagagctt
     1501 ttgactttga tagaagaaga tgtaaagcaa aacggaatag gtcaaaaaca atttttaaat
     1561 gccattaaag taaatttaga aaatatttta agtgtcaatg gcaaaaatca aggttttgtt
     1621 tttgcttcta aacccccaac agtagttcta atggcaggtt tgcaaggggg cggtaagact
     1681 acaagcacta tcaaacttgc aaattattta aaattacgca ataaaaaagt tttagttgca
     1741 gcttgtgatt tacagcgtct agcggcagtg gagcagctaa gacaactttg tgaagctaat
     1801 gaaattgaac ttttctttat agaaaatgaa aaagatccta ttagggttgc taaagaggct
     1861 ttaaaaaagg ctgaaagttc tatggtggat gttttgcttg tggatactgc tggacgtttg
     1921 gctatagatg aggctttgat gaatgaatta aaagtagtta aggatgtttt aaatcctgat
     1981 gagattttct atgttgctga tgcaatgagt ggtcaagatg gggttaagac tgcggctagt
     2041 tttaatgaag ttttaggtat cagcggggta attttatcaa aatttgatgc agatactaaa
     2101 ggtggagtag ccttaggtat agcaaaacaa atcggtattc ctttaagatt tattggtgtg
     2161 ggtgaaaaag tagcagattt agaagttttt ataccagatc gtatagtaag tcgtattatg
     2221 ggtgagggtg atttggcaac tttagctgaa aaaactgctg cgattattga tgaaaaagag
     2281 gctaaaaaac tcaatcaaaa aattaaaaaa ggggagttta attttaatga ttttcttaat
     2341 caaatggaaa gtattaaaaa attgggaagt atgaagtctt taatcggtat gataccagga
     2401 cttggtggaa tggcaaatgc ggtaaaagat atagatttgg ataattctaa agaaattata
     2461 cacattaaag caatgatttc ttcaatgact ccaaaagaaa gagaaaatcc tgatttatta
     2521 aataatgcta gaaagcgtcg tatagcagag ggagcaggtc tttctcaggt agaagtcaat
     2581 cgttttttaa aacaatttag caatgcagca aaacttgcaa aaagattttc aggtaaaaaa
     2641 ggaatggaga gtttgacaca aatgatgagt caagctagaa gacaatttta aattttattt
     2701 ataaatactt tttatagtat ctataaataa aatttttaat tttttaagga gtataaatga
     2761 cagttattag acttacaaga atgggtagaa ccaaaagacc attttatcgt attgtagtta
     2821 cggacagtag aaaacgtcgt gatggtggtt ggatagaaag tattgggtat tataatccta
     2881 tggtagaacc tgaagtaatt aaagttgatg cagagcgttt agcttattgg aaaagcgttg
     2941 gtgcaaaact tagcgataaa gttgcttcta tcactagcaa ataatcatgg tagagaattt
     3001 tcttagagaa tacgcaaaat taattgcaga ttatcctgaa cagattgata ctcaaaaaat
     3061 tgaattaagt gaaaattttt ttgagattgt tctttttgca cataaggttg atacaggtaa
     3121 gcttataggt aaaaatggaa aaatgatcaa tgctataaaa actgcaatct ctgcttataa
     3181 gagcaaggat gcaagttctt atagagtaac ggtaaaagca cttgagtgaa aaagattttg
     3241 ttcaagttgc aaaacttggt aaaactgtgg gtcttaaggg ttatgtaaaa ttgcataacc
     3301 tgagcgactt ttcttctcaa tttaaaaaag atgctacttt ttttataaaa aacactaaag
     3361 aaatgttaaa gattaagcat tataatacaa gcaattctac tgttttattt gaaaattatg
     3421 aagatataga aaaggccaaa gaattaacta atcttattct ttttcagagt atcgagaaaa
     3481 gtagacaaac ttgtaaatta aaaaaagatg agttttttta ttttgatatt ttagagtgtg
     3541 aagtttttga agaagataag agattaggta aagtggttga tatcttggaa actggagctt
     3601 cttatttatt tgaaattcaa agtgatgaaa aatgggttga aaaaaaatat cctaaaatat
     3661 tttttattcc atatttagat aaatttgtta aaaatataga tatagaaaaa cgacagattt
     3721 tttgcacgca agatgctttt ttaattttag aaaattcatg aaatttagct tcgtttcttt
     3781 gttccctaat cttatggaat tttactttca agattctata cttgcaagag caaaagaaaa
     3841 aaaacttttc aaacttaatt tttataatcc aagagatttt tctaaaaatt cctatcataa
     3901 agtcgatgat tataaaatag gtggtggagc tggacttttg atgcaagctg aacctatgta
     3961 tgaggtgcta aaaagtattc aagaaaaaaa agaaaatccc tattttattt ttttaaatcc
     4021 aagtggtaaa acctttaatc aaaaagacgc caaacgctta agtaaaaaag aacatatagt
     4081 ttttgtatgt gggcgctatg aaggtataga tgaaagagtg cttgaaattt ttgcgaatga
     4141 aatttttagt ataggggatt ttattttaac aggaggagaa ttacctgcgc ttgtaatgtg
     4201 tgatgcgatt ttaagaaatg ttaacggggt tttaggaaat atggaaagct tgaaagaaga
     4261 aagctttgaa aataatttac tcgaagcgcc tgctttttca aaacctttta tttttgagaa
     4321 aaaaaataaa aaattttata ctccttcaga gtttttaaag ggtaatcacg ctagaattgc
     4381 aagtttaaaa actactttgg cgtcttgcaa aacgaaattt tttcgtccag atttattttt
     4441 agagcatgaa cgcaaaaaat aagggatttt ttatgaaaaa taaatatata gaacaatttg
     4501 aagcaaaaca aattgaaggt aaaaatgttc cagattttcg tgctggtgat actttaaagc
     4561 ttgcaattcg cattaaagaa ggggataaaa caagaatcca aaattttgag ggtatttgta
     4621 ttgctagaag aggtaatggc gtaagtgaaa cttttatcgt gcgtaaaatt ggcgctaata
     4681 atgttggcgt tgagagaatt ttccctattt atagtgaaag tttagaaagt attactgttt
     4741 tgcgtcgtgg tcgtgtacgc cgtgcaagat tattctactt aagagataga cgtggtaaag
     4801 cagcgcgtat taaagagctt aaaaaataat ttataa
//
LOCUS       DAPIWV010000120         4825 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.121, whole genome shotgun sequence.
ACCESSION   DAPIWV010000120 DAPIWV010000000
VERSION     DAPIWV010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.121"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..406)
                     /locus_tag="RJ272_001563"
     CDS             complement(<1..406)
                     /locus_tag="RJ272_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDV7382615.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLSLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGE"
     gene            complement(403..1458)
                     /locus_tag="RJ272_001564"
     CDS             complement(403..1458)
                     /locus_tag="RJ272_001564"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDV7382616.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCEGSFLK
                     TLSSRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGF
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(1504..2904)
                     /locus_tag="RJ272_001565"
     CDS             complement(1504..2904)
                     /locus_tag="RJ272_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HDV7382617.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFGRNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            2934..4055
                     /gene="tgt"
                     /locus_tag="RJ272_001566"
     CDS             2934..4055
                     /gene="tgt"
                     /locus_tag="RJ272_001566"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDV7382618.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            4057..4824
                     /locus_tag="RJ272_001567"
     CDS             4057..4824
                     /locus_tag="RJ272_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDV7382619.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQNEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILNKNTKEHLTR
                     IDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
BASE COUNT         1738 a          748 c          605 g         1734 t
ORIGIN      
        1 tttctccttt taatttctta atatgagaaa aagctcctat aatagccaaa ggattagtaa
       61 gcttagataa agtttctata ttatcagggg cactaagact ttgtgcaaaa tttaaatctt
      121 tatattcttt aagcaggctc aattgctctt ctaaatttgc tatcttgcgt ttaagttctt
      181 cttgttggtg aatatcggaa gtctttttta aattaagatt taaaatgatt aattcatcat
      241 ttatatcttg atattttata aaattttcat aacgtatatt ccaaatacta gcactgatta
      301 cagtatttaa agtattaatt ttctcattta tattattaat aatagtccga tttacatcac
      361 caaaagcaaa aacaacaaaa aaggttaaaa taataatttt tttcattgga attctcttaa
      421 agttgcaatt atatcttctt tagaaatatc accttttatc aaacccttac ccaaaggact
      481 agcaagaaca aaattgattt ttttattaga gcttttttta tccatgaaaa aagcttcata
      541 aaattcatct acattgttga ttttatatga tattggcaaa ccgaatttaa gtaaaatatc
      601 ttttattctt tgactttgca ttttatccaa aaaccctaaa tttaaagcca attgatttgc
      661 cataaccata cctatagcca ccgcttctcc gtgtaaataa agcttataat ctgtaaaatt
      721 ttctataaca tgagcaaaag tatgcccata atttaaaagc attctaagcc ctgattcttt
      781 ttcatcttgt tcaacaaccc ttgatttaag ttctatgctt cttgctataa tttgagtaaa
      841 aatttcattc tcacaagtag catttaagaa acttttttca tcaatttttt ctataaaatc
      901 aagtatacta tcatcaaaca ttgctgccat tttaataaat tcagccatgc ctgcagcaag
      961 ttctctagag ctcaaagtct ttaaaaaaga accctcacaa tatacagctt taggttgata
     1021 aaaagtgcca ataagatttt taccaaaatt attattaaca cctgtttttc cacctactgc
     1081 tgcatcaacg caagctaaaa gtgtagtagg aatatttata aaatcaatac ctctttgata
     1141 aatactagca gcaaatccgc ccatatcact aatcacgcca ccaccaaaac ttataagcac
     1201 gctttttcta tccaatttag aattaaacat ttggtttaaa atttcttcca tggtgcttaa
     1261 atttttatat tcttcaccat cttttacagt ggcaataaaa atttcttttg ccttaatttt
     1321 agaaagtaat gttttcaaat gaagacctga aatcttagga tttgaaagta taaaaacctt
     1381 actatcaaat tctaattctt caagttcatc aatataaacc ttataagcat tttcttttaa
     1441 cttaacttct acttgcattg aactactctt tttgcgttta ttctatcaca tttaattaat
     1501 tatttattct actggtatga aaagttggta attttgtctc attttataat aatgcctatt
     1561 taaatttgta cttaaatttc tgccaaaatc tctatttagt aattcttttt gaaaactcac
     1621 aaattgtaac aaatcttcgc gatattgcaa atttaaaaga gggttttcat catttttatt
     1681 aataatttgt atatttttat cataaagctt agataaactt ctaaaatact cctccatatc
     1741 tgtagtattt tgagaatttg gattataata atataaaata actccaaaat caagctgttt
     1801 acttaaatca gtaatgacat ttgcattgtt ttcaagttca ctctcatcag cacttaaaat
     1861 aatcgcttct ttaagctcat caaaagaagc ttcacccact ttcataatag gaatttttaa
     1921 atcaaaaaaa gcttgttttt ctttctcaaa attttttata tcagttacaa ctaatcctat
     1981 atcattattt tgcaaccatg tggaaatttg tttaaaatcc gtgttgaaat aatcaaaaaa
     2041 cacaccttct ttatcctcag aaagtttttt taatttttca tacattaccc ctaatttagg
     2101 attgataaca tgtataaaaa atctttttgc attgcttttt tgagttaatt ttaaagtagt
     2161 atcaagcact ctttcttgca tattttgatt catatttttc atatcaatta aagcaaaaac
     2221 attacttcca aaaggcatag gaaattgccc tgctttgcct cttatattat gaaaaatact
     2281 ttgtaaaaca acaggatctc caacgatcaa aatgctatca tttggctcta aaacaaaaga
     2341 tggttttaca aaataaattt tagaatttct ataaataagg actatgcgcc accttttttg
     2401 ttgtattgaa cttatgtgcc tataagcaaa aatagaccct gctggaattt ttacttccat
     2461 aatctcccca actccaagtc ctatatactg agctgttaaa gcaatatctg gtaaaaaatc
     2521 cataaatcta cggcttaaag tcattctagc atcagctaaa tttgcatgag tatcattaac
     2581 acttaacccc caaaaatcca ttatttctat ttctaaattt ggatttaaag aacgcaaagc
     2641 ctcataactt tttttagttt caaattcatc ttgcatataa ataaaagcct gtttaaaatc
     2701 cttactcata atattttcaa gacgcgctgt gcttgtagga tcaaaataat gcaagtcaat
     2761 atactcacta gaaatattta agttattttt ttcactattt tgacacacta ctgtaaaaaa
     2821 gtaacctaag cctttttcaa aacaaagcct ttctaagaaa tgctttgcta aaataccatc
     2881 tattataatt aaaatattat tcattttaaa ctccaaaaag gaaattataa caaatggaat
     2941 ttaaattaaa gcataaagat ggaatggcaa gggtttgtga aatcactacc gcacacagca
     3001 cttttttaac ccctgttttt atgcctgttg gcacagtagg agcggttaaa agtcttgatg
     3061 ctaatgatat gaaaaatgag cttgatgcaa aaattatttt agcaaatacc tatcacatgt
     3121 acttgcgtcc aacttccaaa gtagtaaaag attttggagg tttacatgga tttacgaaat
     3181 ttgatagaag ttttttaacc gatagtggtg gttttcaagc tttttcttta agtaaaaatt
     3241 ccaaacattt taatgaaggt atagaattta aaagtcacat tgatggaagt cgtcatcttt
     3301 ttactccaaa aagtgtttta gatacccaat atgattttaa ctctgatatt atgatgattt
     3361 tagatgattt agtagcccta cctgcaacca aagaaagggt taaaatttct gttgatcgca
     3421 ctatactttg ggcaaaagaa gctattgctt atcataaaaa tatgcaaaat aaaggtatag
     3481 gtatagggca aaatattttt ggtattatcc aaggtggcac agattatgaa gaaagaaagc
     3541 gttgtgcttt aagtttaaac gaaatgccat ttgatggttt agctataggt gggcttagcg
     3601 tgggcgaaga aaacgccttg atgtacgaaa cagtccaaaa cttaaaccct tatctagatg
     3661 aaaatcgtcc aagatattta atgggcgtag gaacgcctga agatttagta gaaaatgttg
     3721 agcgaggagt agatatgttt gactgtgtga tgccaactag aaatgcaaga aatggaacat
     3781 ttttcacaag ttttggaaaa tttaatatca aaaaagcaga atttatcaac gatcatgaag
     3841 ttatagattc tacttgctca tgttatactt gtcgtaattt ttcaaggggt tatttaaacc
     3901 atctttttaa agctaaagaa cttacttttt ttcgtttggc aagtctgcac aatctacatt
     3961 attatcttga acttgcaaga aagatgcgtg aagcaatttt gaacaattct tttacgcaat
     4021 ttaaaagaaa tttttatcac ttaagaggca aataaaatgc tagagctaca cgaaaatcta
     4081 aaaaaaatcc tgcaagcaaa gaatttagaa actttctata gcgaaattta tggacaaaaa
     4141 atttttgttt acgtgggatt aaatttagaa acttggcttt ttaatgatga aaaaatttat
     4201 aaacttcaaa atgaagaatt taagctttct agcatagaag aattttcaaa ttttattaaa
     4261 tctattttag aagattttaa agtacaaaat actcattttc aaaacctttt agaacacaaa
     4321 gaaggtatta tcttaaaagg tggttttgtt aaaaattttt acaaaaaatc ctttgtttta
     4381 agacaaaaaa ttaacaaaaa tctaaagcaa attaatcttc taagtgaagc tttcaatctt
     4441 ttgcttagcg aacaagcaca atacaaaaaa catttaaaaa ttctaaattt atccatcagc
     4501 atcttaaata aaaataccaa agaacatcta acaagaattg atactcttta tacattaaca
     4561 agtgcaatta aaaatgaaaa aatgaataaa agtatttatc ttttaagcat actttcttct
     4621 attttcttac ctttaaattt gatcgtagga ttttttggaa tgaatactaa taatcttttt
     4681 ttcaaagata gcccttatgg tacactttat attttttctt tgatttgctg tattttgatt
     4741 gtaggtttta tattttatta ttcaaaaaag actaaagaat ttgatttaga tgaaggtaaa
     4801 aaagctaaaa aacaaacaaa ataag
//
LOCUS       DAPIWV010000121         4755 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.123, whole genome shotgun sequence.
ACCESSION   DAPIWV010000121 DAPIWV010000000
VERSION     DAPIWV010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4755
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.123"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            37..1062
                     /locus_tag="RJ272_001568"
     CDS             37..1062
                     /locus_tag="RJ272_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7382620.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            1156..2493
                     /locus_tag="RJ272_001569"
     CDS             1156..2493
                     /locus_tag="RJ272_001569"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDV7382621.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            2486..2956
                     /locus_tag="RJ272_001570"
     CDS             2486..2956
                     /locus_tag="RJ272_001570"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HDV7382622.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            2940..3392
                     /gene="hemJ"
                     /locus_tag="RJ272_001571"
     CDS             2940..3392
                     /gene="hemJ"
                     /locus_tag="RJ272_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HDV7382623.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(3389..4735)
                     /locus_tag="RJ272_001572"
     CDS             complement(3389..4735)
                     /locus_tag="RJ272_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7382624.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPKEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFTSMYVGGGTT
                     LINEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSQELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIEDNEFAYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATKFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSTSMEFKAETN"
BASE COUNT         1575 a          613 c          844 g         1723 t
ORIGIN      
        1 attttatttt aatttatctt taataggagt ttataaatga aagtaaaatc attgctaatc
       61 gcatccttag ttgctttttc aagcttaaat gctgcaagtc ttatagatga agctaaaaat
      121 tcaggtcttg ttgccttacc aaaagatcaa aaaggcgttg atgaaatttt aaaacaaaat
      181 ggagtaaagg ctagtgaatt tactcttgaa aaagcagagc ttggcaaaaa gctctatttt
      241 gaaccacgtc tttcaaaaag tggtatcatt tcttgtaata cctgtcataa tgtaggactt
      301 ggtggaacag atggaatcag tactgcaata ggtcataaat ggacagcaaa tcctcatcat
      361 ttaaattcac caacagttta taatgcagtt ttaaataata ctcaattttg ggatggtcgt
      421 gcaggaacat tagccgatca agctaaaggt ccaatccaag ctgatcctga aatggcaact
      481 cctgctaaac ttgcagtaga aaaaatttca tctttgcctg aatatgtgag tgagtttaaa
      541 aaaatctatg gtaaaagcgg tgtaaatttt gacaatattg ctgatgcaat tgcaaatttt
      601 gaaagaactt tgatcactcc atctcgtttt gataaatttt tagaaggcga tgaaaaagct
      661 ttaacaaaag aagaacaaaa aggcttaaag ctttttatag ataaaggttg tgtagcttgt
      721 cataatggtg tgaatttagg tggcaatatg caagcgtttg aagttgctgg taaatataaa
      781 tttgcaaatt taggtgattt taaaggtgat gcaaatggca tggtaaaaac tccaacttta
      841 agaaatgttg ctgaaactgc tccatatttt cataatggtg cgatttggaa tttaaaagat
      901 gctattaagg aaatgggtag tgtgcaactt ggcattaaaa tttctgataa agaagcaaaa
      961 agtattgaaa ctttcttaaa atctttaaca ggaacaaaac cagcaattgt ttatccacaa
     1021 cttcctattt ctactgaaaa aactcctaaa cctgaactat aaggttccaa acaagctcta
     1081 attttagagc ttgtttaaat ttctttatct tagctttgtt ataattgtct ttaaattttg
     1141 ctagaaaggt ttgcaatgaa actttttgga actgatggag ttcgtggaaa agcgggtgaa
     1201 tttttagata gttttttggc tatgcgttta gcaatggctg cgggtattta ttttaaagat
     1261 aaaagtatta ctaataatat cttagtagga aaagatacaa gaagaagcgg ctatatgata
     1321 gaaaatgcta ttgtttcagg gcttacttct ataggatata atgttataca aattggtcct
     1381 atgccaactc ctgcgattgc attcttaact gaagatatgc gttgtgatgc agggattatg
     1441 atttcagctt ctcacaatcc ttattatgat aatggtatta aattttttga tgctcatgga
     1501 aacaaactca gtgaagatat agagaaaaaa atagaagaaa tttattttga tgataagctt
     1561 atacaagcct ctaaggtaga tatggagaaa attggtcaag cgaaaagaat tgatgatgtt
     1621 ataggaaggt atattgtttc tattaaaaat tcttttccaa aagatcttac tttaaagtct
     1681 ttgcgtgtgg ttttagatgt ggctcatggg gcagcttata aggtagcacc tactgttttt
     1741 aaggaattag gtgctgaagt tatagtaatg agcgataaac ctaatggact taatatcaat
     1801 gaaaattgtg gagctttaca tcctgcaaat ttagctgctg aggtaaagcg tttgcgtgca
     1861 gatgtgggct ttgcttttga tggtgatgca gatcgtttgg tggttgtaga tgaaaaaggc
     1921 gaagtggcta atggggatag tttattgggc gtattggcac tttatcttaa agaacaaggt
     1981 aaattacaat caagtgttgt ggctactata atgagtaatg gtgctttaaa agagttttta
     2041 aataaacatg gtatagaact tgatacttgt aatgttggcg ataaatatgt gcttgaaaaa
     2101 ctaaaagcca atggtggaaa ttttggtgga gaacaaagtg ggcatattat ttttagcgat
     2161 tatgcaaaaa ctggagatgg tttgatagcc gccttgcaat ttagtgcttt aatgctttct
     2221 aagaaaaaat ctgcaagttc tattttgggt caagttaaac cttatcctca gcttttaacc
     2281 aatcttaaaa ttgcagaaaa aaaagattta gataaaatta aaggtttaaa agaattaaaa
     2341 aaagatttag aaaataaaaa tattaatacc ttatttcgct attctggaac agaaaatttg
     2401 ataagacttt tactagaagc cagagatatt aagctcttag aaaaagaaat gaaaaatgtt
     2461 gtggagtttt ttaagaaagc tttaaatggc taaaactttt aaatttattt tttatttttg
     2521 gggtgccttt gttttggttt ttgcccttga tcaatgggta aaatccttaa ctttagcagg
     2581 atttagatgg cagagtgaat acttagattt aacttatgct ctaaatacag gcgtagcttt
     2641 ttcaatgttg agttttttag aacataattt aaaatattta catcttgctt taattggcgt
     2701 gctttttatt tatctttttt ggcaaagaac acttttaaaa actcatagca tagcttttgg
     2761 aatgatgctt ggtgccggcg tttcaaattt attggatcgt tttatacatg gaggtgtagt
     2821 ggatatgttt ttttggcata aatggtttaa ttttgctatt tttaatgttg cagatgtcat
     2881 gataaatata agtgtggctt tgattttaat acaagaaata tttaaaaaaa ggaaaaaaga
     2941 tgacagaatg gattaatgat tattattttt ggattaaatg ggtgcattat ttggcatttg
     3001 tttcttggat ggctggactt ttttatttac ctcgtctttt tgtgtatcat gctgaacata
     3061 aagacaataa aggttttgtt gaggttgtaa aaattcaaga aagaaaactt tattattata
     3121 tacaaactcc tgcaatgatt gtgactttaa tcacaggaag tttaatgttg catgctcata
     3181 aggaagtttt aatggtaggt gcgggtttta tgcatgttaa acttacctgt gttacacttt
     3241 tgattatttt ccatatacat aattattatt gtttaaaagc tttagcaaat gatacttcta
     3301 ctaaaagtgg aaaatatttt agaatttata atgaatttcc aactataatg tttattatta
     3361 tcgctctaat gatggttgtt cgtccctttt agtttgtctc cgctttaaat tccatgctag
     3421 tggagttaag cggatcaata ttttctttca tgatatcgat ataatcttta tttttaagac
     3481 gcttatcatc tctaaatact gcgcgcacaa gatccattcc tgtgtaaaaa tctttcatta
     3541 aaaccacaaa aagatattga ccaaatttgg ttgcgattaa agcattttga tcttttatga
     3601 tggcaccgct tgttttaagc cctaaaagtt ctatgaaaag ttctttttcg agattgcaat
     3661 ttagagtttt gttaaattta tcaatttcta ttttccctga aaaaatttca gttaaaaaga
     3721 catatttgat aatttctttt ttatcaaaac aagctttggc tatattagca ttttgttttt
     3781 cttgtataaa tttggcataa tcatttagat taaatgcatt aattaaaagc tctccatcta
     3841 agaagctaaa tgctccacta cctactccta ggtattcatg atgagagcta acatattcat
     3901 cattgagttt atttttttcc aaagaaaaac tccaaccatt gttttgggta tagtctttaa
     3961 aaaattcgcg tatgatttga taataagcaa attcattgtc ttcaatgctc actcctaaac
     4021 ttttggcgat attgtctttg gtaagatttg atttcattaa aggataggtt gtgatttgtt
     4081 gcggggctaa atttttggca atttctaagt catttaaaag ttgtttttcg ctttgtcctg
     4141 gaagattgaa aataagatct atactaaaaa taggcaaaat tcctaaagct tttgaaattt
     4201 tttcttgaag ttcttgagat gaaccaaatt tattatatct tgccactttt tttaaagttt
     4261 catcatcaaa actttgaatc ccgcaactta aacgatcaat tatgccttta aacatagaaa
     4321 gcttatttgg atcaatatga tttggatcgc tttcgcatga aatttctttt atattaaata
     4381 attttttaca aagttctaag gtttttaata gttcctcttc gttaatcagt gttgtaccac
     4441 cacccacata catggaggta aaatcaaaac ctttatcttt catgatttta atttcttctc
     4501 taagattttg aaaatatact ttggctaaat tttcatcata ataatattta tgaaagctac
     4561 aataaggaca aaaagtatgg caaaaaggta catgagcata aagcatatag cttttatctt
     4621 gttttggaat tttttctttg ggttgtttta aaagttcaac attgaaacct ttttgaagag
     4681 atttttccat catagtatga gagtatttta aagctaaatt ttgaaataaa ttcataagtg
     4741 gcctatatat taaaa
//
LOCUS       DAPIWV010000122         4751 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.124, whole genome shotgun sequence.
ACCESSION   DAPIWV010000122 DAPIWV010000000
VERSION     DAPIWV010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4751
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.124"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(12..770)
                     /gene="map"
                     /locus_tag="RJ272_001573"
     CDS             complement(12..770)
                     /gene="map"
                     /locus_tag="RJ272_001573"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDV7382625.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(780..1523)
                     /locus_tag="RJ272_001574"
     CDS             complement(780..1523)
                     /locus_tag="RJ272_001574"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDV7382626.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKEKENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(1525..1983)
                     /locus_tag="RJ272_001575"
     CDS             complement(1525..1983)
                     /locus_tag="RJ272_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDV7382627.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTTKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(1992..3161)
                     /gene="nhaA"
                     /locus_tag="RJ272_001576"
     CDS             complement(1992..3161)
                     /gene="nhaA"
                     /locus_tag="RJ272_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7382628.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3158..4306)
                     /gene="nhaA"
                     /locus_tag="RJ272_001577"
     CDS             complement(3158..4306)
                     /gene="nhaA"
                     /locus_tag="RJ272_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7382629.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(4450..4632)
                     /locus_tag="RJ272_001578"
     CDS             complement(4450..4632)
                     /locus_tag="RJ272_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HDV7382630.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1796 a          906 c          577 g         1472 t
ORIGIN      
        1 ataatttaat atcatatcat agaaagaatt tcagcacgcc cattaatcac ggcaacacaa
       61 tgttcataat gagccgcatt cagcccatca atacttccag catcccattt tccattataa
      121 tgctttggtg ttccatcttt ttggcatatc ataggctcta tgcaaaacac cattccattt
      181 ttaattttag ggccactttt tgcactcgca cctttttcta aatagtttaa aatttcaggc
      241 tctccatggg gctttcgtcc tataccatgc ccgcaatatc cacgaagcgg gacaaaacct
      301 cttgcatgga taaattcgcc taaagcagct gaaagttcct taaaacgcat tccatcacga
      361 ataatatcta tagcatgata taacgcgtct ttagcacaag agattaaagc tttatcagtg
      421 ggtgaaactt ctcctatagc aatagttctt gctgcatccc cataataccc atcaatcaaa
      481 cttcccacat caagacctaa aatatcaccc tctttgataa ttttatcatc tggaattcca
      541 tggatacaaa cttgatttaa agatgtgcaa atggcacctg gaaaaccata aagtccctta
      601 aatgatggct tggcgccaag gcttaaaata taatcttctg ccattttatc gatttgtttt
      661 aagctcattc ctattttaat ttcattctct aaaaaattta aagtttttgc tacaatttga
      721 tttgctattc ttaatttttc tatttcatct ggttttttca attctatcat tttatttcct
      781 tataaattta gccaaatttt agcagtattt tttaaagatt caacatcgct tgaagcataa
      841 aaatgtaatt ttgctttatg atttttcaaa tctatatttt ctttttcttt aagaaattca
      901 actatagcat ctcctgaatg aattaatttt gttttatcac caaaatactt acttaaagaa
      961 cgacctagta aagggaaatg agtgcaagcg agtatcaaag catctggagt tgtgatattt
     1021 ttaaaataat actccatagc actttgcaaa aaatctcctt caaaaatacc ttcttcaacc
     1081 ataggcacaa aaagccctgt agctaaagca tttatatttg tatatccttg ggataataaa
     1141 cgcttttggt attcttctga tttaatggtt gcttttgttg caatgactaa aatttcttta
     1201 tttttatcat gcaaagcttt tatcgttgct tcaacccctg catcaattac accatatact
     1261 ggaaaatgtg cttttgtcct taaagcatct aaagcataag cactagcagt attacatgca
     1321 atgataagca tatcaatttg aaattgttca aaaaattcca atgcttcaag acagaacttt
     1381 ataatagtat ctttatcttt tactccataa ggaactcttg cagtatctcc ataatagata
     1441 atttcatcaa aaagtctagc ttcataaaga gattttaaaa cgctaagccc ccctaccccg
     1501 ctatcaaata cacctatttt cactttaata ccttcttgct cctatataac gagccttcca
     1561 ataagaacta tttagctcga cttcttttac tccaccttta gtagataaat gtataaattt
     1621 tcccttgctc atataaatac caacatgcat accatttggc cctctacctg tcttaaaaaa
     1681 taccaaatct cctgtttgca attttgattt agaaactttt cttccagaac ctaattgagt
     1741 ttttgtagtg cgaggtatgc gtatattaag ctgagctaat gcgctctgtg taaatcctga
     1801 acaatcagca ccttttttag tagttccacc taaaacataa ggggtttttt tccattcatt
     1861 tgcaataacc ttgagccttg cttctttatt tgtgttgtaa ctaggacgat agtttagatt
     1921 ctgataaaaa ctacatccac ttataaaaaa tataatcgta ataataaaaa aaatatgcct
     1981 catcaatccc cttaagatcg agtagtaaag aatttaagat aaataaaacc ccaaatccca
     2041 gaacaaaatg aggctataag aatagctaag ttatctgcat aattaaaaat atcactaact
     2101 tcatacgcca atccatcaat aaacaaactc attgtaaaac caattcctgt aagtatgcaa
     2161 accccataaa gttgtttcaa atttgaacct tggggcaaag ctgcaaattt aaagcggatt
     2221 gccaaataag aaaataaaaa tacacccact tgtttaccca caaaaagccc taagaaaata
     2281 cctatactta cacctgaaaa aattgctcct atatcgatat tggataaatt tactccagcg
     2341 ttagcaaaag caaataaagg taaaataata aaagcaatcc aaaattttaa gctttcataa
     2401 atttcttcta aaaatgcttc cccattttta gtttgcatcg gtataaaaaa tgctgttaca
     2461 attccagcta aagttgcatg tactccactt tttaaaacac taatccaaag aataactgag
     2521 caaataaaat aaaaagactt tcttgttatc cctaaaagat ttaaaataag cattaccaaa
     2581 atagcaagtc ctgcaacgac aaaagcaact attgataatt ttgtcgtata aaaaatagct
     2641 ataattaaaa tagcacccac atcatcaaaa atagccaaag aaagtaagaa aatttttaaa
     2701 cttgatggaa tgtgcttgcc acacatcatt aaaatcgcta aggcaaacgc tgtatctgtg
     2761 gctgtaggta tagcccaacc ttttaaagta taagcatctc ctatatttac caaagcaaac
     2821 aacatcgcag gtataagtat accccctaaa gcagccataa aaggtaaaac aatattttta
     2881 ggatttttaa aatccccatg caaaaattcc ttcttaagct caagccctat agcaaagaaa
     2941 aatatagata taagcccatc atttatccaa agtaaaaaag gcttgttaag ctcaaattca
     3001 cctacactaa atccgacttt taaatttaga aattctcgat aatgttcgct aaaagacccg
     3061 ttttgcacaa gcaaagcaag caaagtacaa actataagta aaacaccacc aaaagcctcg
     3121 tttaaaacta aagtttttaa tttatgtact atattattca tttaacaatc ttaagataaa
     3181 taaaaccaac aatggcactt aaaaaacttg ctattaaaat agcaagttta tccgcatgtt
     3241 caaaaatatc actattttta taagccaaac catcaataaa caaactcatc gtaaaaccaa
     3301 tgcctgttaa aatacatata ccataaaatt ttccatattt aatattttca ggtagttttg
     3361 caagcttaag tttgatagca ataaaacaaa aagtaaaaac acctagttgc tttcctaaaa
     3421 ataatcctag aataattcca aggcttacag gcgagaatac cgaaccaaga tgcatatctc
     3481 tgatatcaat cccagcattg gcaaaagcaa ataaaggtaa aataaaataa accacccaag
     3541 gatttaaatc cttaagaact tcatgcaaat aaggtttttt attttttgta tcaagcggta
     3601 taaataaaga aataatcaca ccagccaaag tcgcatgtac tccactttta agcatagcta
     3661 tccacaatac aacacctact aacacataca aagaaagatg ggtgatgtga taataattta
     3721 acaaaagcag agcaaatata caaaacaaac aaataataat cgccaaagct gaaagctgat
     3781 ctgtataaaa taaagcaata ataacaatag cacccaaatc atcaaaaata gctaaagaaa
     3841 gtaaaaaaag ctttaaactt gtaggaattt tatttcctaa aagcatcaaa atacccactg
     3901 caaaagctat atcagttgct gtaggtattg cccaaccttt catagcaaaa tcatgagaat
     3961 aattaatagc aataaaaatt aaagccggag taatcatacc ccctaaagct ccaaatatag
     4021 gtaaagatac agctcttata tttttaagtt gcccacgtaa aatttcatat tttaactcaa
     4081 gccctataca tagaaaaaat atagctatca aaccatcatt tatccataaa tccaacgact
     4141 ttgaaatttg aaaatgatca aatcctactg taaaattagc atgaaaaaaa tctgtataaa
     4201 taacacttaa agaagaattt ttacataata aagctaaaaa tgtaaaaaat ataagcaaaa
     4261 taccagggaa agtttcactt aaaaccatct tctttatcat ttgcatcctt gctcctaagt
     4321 aaatatttgt aaaaaattta atacgataaa taaaatggta aaattataac gaaaaaatac
     4381 taaagaaata attatttaaa aaaacaagcc caagatacca aaaagttctt aagcttgttc
     4441 ttaagatatt taagcgtaaa tatctaaacc actagagcta gaagcttgtg gagcggaggc
     4501 ttgagagaca ccttccatac cttcgatgag ttcattcatc aatgcctcgt ttgtgtccat
     4561 agattttttc aaaactgaag tattaacagc agtcattaaa ttaacattac ccatagaaac
     4621 atctgaaacc atacatcctc cttttagatt gagtcttaag actttattta aatcggatga
     4681 tatttttaaa acttaatatt ttttactaaa ctttttaaaa tttttcaagg aagccaatat
     4741 ctgaaattaa a
//
LOCUS       DAPIWV010000123         4660 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.125, whole genome shotgun sequence.
ACCESSION   DAPIWV010000123 DAPIWV010000000
VERSION     DAPIWV010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4660
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.125"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..604)
                     /locus_tag="RJ272_001579"
     CDS             complement(<1..604)
                     /locus_tag="RJ272_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDV7382631.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISY"
     gene            complement(597..1307)
                     /locus_tag="RJ272_001580"
     CDS             complement(597..1307)
                     /locus_tag="RJ272_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7382632.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKKNASKIISILEELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1304..2098)
                     /locus_tag="RJ272_001581"
     CDS             complement(1304..2098)
                     /locus_tag="RJ272_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7382633.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKVVFIGAWWIILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2085..3029)
                     /locus_tag="RJ272_001582"
     CDS             complement(2085..3029)
                     /locus_tag="RJ272_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7382634.1"
                     /translation="MLKRLVFSIVVAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLATFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3029..4564)
                     /locus_tag="RJ272_001583"
     CDS             complement(3029..4564)
                     /locus_tag="RJ272_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7382635.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDEHMSLKPDLAASWNVSKDGLSYDIFLREDVLWHDGVKFSADDVK
                     FSLEAFKNPKNNSSIYVNFEDIKSIEILNPYHLKITLSKPFPAFLDALSIGMLPKHLL
                     SDKDLNTASFNQNPIGTGPYKFVKWKKGEYVEFKANENFYLTKVKTPRLIIKHIFDPS
                     VASVELKNGKIDAALIDVSLLNIFKKDENFKILRERSADYRALMFNLENEFLKDIQIR
                     KALNYAIDKQSIVKNLLHDYGFVANHPLERSWADSKAFKTYEYNPKKAQDLILALGFK
                     KNDEGIFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
BASE COUNT         1851 a          828 c          506 g         1475 t
ORIGIN      
        1 tataagaaat attatttttt tgctgatagt catataaaaa agttaaaatt tctttagaag
       61 ttttaatatc aagtgctgaa gtaatttcat ctaaaatcaa caatttagga tttaaaacca
      121 aagcacggat aagacctaca cgcgtggctt ctcctccact taactcatag ggtttttgtt
      181 ttaaaatttg cttttttaga ctaaaaaaat caaaaaattc taaaatcaag tcatcattct
      241 tttgtaaatt aaaattttcc aaaccatctt gtataagatt tttgattttt ttataagggt
      301 ttaaagccat tttttgatct tgaaagcaat actgaatttg ctttcttaaa agtctttgtt
      361 tgtttttatc aagcttgtgc aagttaagat tttcatacca tacctcacct tcacttggat
      421 cttctaaaaa acaaagaatt ctagctaatg tgcttttacc tgcaccactt ttacctaaaa
      481 ttattaaatt gtcattttca tttaaagaaa aattgacatt atcaaaaata atatgtcttt
      541 ctttttttaa ataccaatgc tttttaagct cataaaactt acttaaatta caaactttaa
      601 gcattataat accttaaaaa ctcatctaag ctatataaat ttgaactatt tttttctagc
      661 ataagaattt catctgctaa agaatttacc aaatttaaat catgagtgat acaaactaag
      721 gctgtagtat tttttaattc ttctaaaatc gatatgatct ttgaagcgtt ttttttatcc
      781 aaagaagctg tgatttcatc acaaattaaa atttggggtt gatttaataa tgccaaagct
      841 aggctcaccc ttcttgccat acccaaactt aattcattag cataagaatg ccacaaacga
      901 tcaagatttt caaatcctaa tttttgaaaa taagaaaaag cgtaatcttt tctttctttt
      961 tgttttaatt ttgtatgagt ttttaaaaca agatgacata aatttccaat atccaaataa
     1021 ggataaagac taagctctgc atcttgcaaa acaagtgcca ccttagaacg aaaatttcta
     1081 agctcttctt tgttaaaatt aaaaatacaa gaattatgaa aacttaattc atcaaaactt
     1141 attgtgaaat tagaatctaa aagtcttacc aaagcttttc ccaacaaact tttacccact
     1201 ccactttgtc ctagtatcat taaagttttg cctgttttta tatctaaatt aatatcctta
     1261 agcaataaat tattcttcaa actgatattt aaatttctta ccttcaagat cttatacccc
     1321 aaattttttg taaaaaatta cccaaccata aaagaggtaa aaacaacaaa agcaagctta
     1381 aaagtggaaa aagtattatc caccaagcac ctataaaaac tacttttgaa gactcactca
     1441 aaagagtacc taaagttgga atttcaaatc ctaaacccag tccaaaaaaa ctcaaagtag
     1501 cttctgtggc tatagcatga acgatattaa atataaaaag tgtaaaaatc agtgttttta
     1561 aagcaggtat taaatcttta aaaaaagctc taaatttagt tcttccaagc actatatttg
     1621 ctttgtaaaa atctaaattt tcaagtcttt ttaattcact ttctataatt cttgctatga
     1681 aacaccaatg aattaaagcg attaaaaaaa tcatcaaaaa cacatcagaa gttatcatac
     1741 tttgaaaaaa catcataagt aaaaaagcag gcaaggctaa aaaaaactct aaaatacgca
     1801 tccaaaaaac gtaaaaaaaa catcgcgcta aaaacaaata gcacaaagca aagataatag
     1861 acaataaaga tccaccaaca cctataatca aagaatttct caaagcaaaa agcaaacgag
     1921 aaaacaaatc tctgcctaaa aaatcagtcc ctaaaatata agtaaaatta ggagcttgat
     1981 gcaaattttc taaatgagtg cttaaaatat caaaaggagc caaaaaaggt gcaaacaagg
     2041 cgcataaaaa caaaaaaatt aaaggcgcaa gaatgataag aaatttaaac aaaatcaagc
     2101 cttcttaatc taggatttaa aatcctagct acaatatcac ttaaaaatgt aaaaaatgtt
     2161 gcaagcaaaa cgctaaaaaa tataagtgca agtacaacag gataatcttt aaaaataata
     2221 cttttaaaaa gtaaagaccc aagcccctcg taagcaaaga cactttctac cacataagtt
     2281 cccatcataa aacttaaagc acttccccca aaataagcca caataggact taaagaatat
     2341 ttcaaaacta aaaaataaat atctttctcc cttaaagctc tagcgtataa attttgaata
     2401 aaaatttgag aaaaactttc attgataaaa tttctagcaa tccttaaaaa taacgccaaa
     2461 tgtgataaaa cgagcaccaa aacaggcaaa atcaaatgct ctaaacgatt taaaaaatca
     2521 tcttcaaagc ctatatcact acttcccata acaggcaaaa ttttccaaaa aattccaaaa
     2581 atcaaaacaa acaataaagc caaaacaaaa ggaggtaaag caaaaaaatt aaaagctaaa
     2641 aaagtgatga ttttatctat aaaactttct ttataataat atcccaaaag tgccaaaaaa
     2701 acactgagta aaaataaaag cattaaggca ctaaaaccca aaataaaagt attaaaaatt
     2761 ctttctttta taagctttaa aacactttct ccacttaaaa aagaaactcc taaatctcct
     2821 tttaaagcct taaaaagcca aattttatac tgctctagca aaggcttatc aagccctaaa
     2881 ttttgttcta ttctttgaac aaattcttta ctttgtgaat taactccatt agcataagct
     2941 atactgcctt tactaaaatg aagtaaaaca aaacataaaa aagtgctaaa aaatgctacg
     3001 acaatactaa aaactaagcg ttttagcact atttactcca ctcataaaca ttccaagtaa
     3061 aacccactcc gtgatgacct aaagtccttg ctttgatacc ttttaaatct ttattataaa
     3121 ctaaagcaaa atcaagatag gctaaaaaaa taaaaggagg attttcatac aaagcatcta
     3181 taaaatcttt ataatatttt tttctctctt ccaaatttga agtgtttctt gctttttgca
     3241 aggctatatc cactttttta tcatgataat gtccaaaatt ccaaccctca tcatttaaag
     3301 cactatcttg cgaactttca aataccctaa aagtgtgaaa atcaggatct aaaggacttc
     3361 cccagcctat taaaaaacta tctactttag aataatcaaa acttccagca ggtttagcca
     3421 ccaccttgct tacaactcct atttttctaa attcgctttg caaaattcca gccaaactta
     3481 cccttaaagg atcattactc atcgcccaaa tttcaaattc taaaatcttg ccatcttttt
     3541 caaaaatacc ctcatcgttt ttcttaaaac ctaaagccaa aatcaaatct tgggcttttt
     3601 taggattgta ttcataagtt ttaaaagctt tagaatccgc ccaagaacgc tctaaaggat
     3661 gattggctac aaaaccataa tcatgcaaaa gatttttgac tatactttgc ttatcaatag
     3721 cataatttaa agcctttctt atttgaatat cttttaaaaa ttcattctct aaattaaaca
     3781 ttaaagctct ataatcagca gatctttcac gcaaaatttt aaaattttca tcctttttaa
     3841 aaatattcaa taaagaaaca tcaatcaaag ccgcatcaat tttgccattt ttaagctcta
     3901 cgcttgcaac cgaaggatca aaaatatgtt tgatgataag tcttggggtt tttacttttg
     3961 taagataaaa attctcatta gctttaaact ctacatattc gccctttttc cattttacaa
     4021 atttataagg acctgtgcct atgggatttt gattaaaaga agcagtattt aagtctttat
     4081 cactaagtaa atgtttagga agcattccta tacttaaagc atctaaaaat gcaggaaaag
     4141 gtttagaaag cgtgatttta agatgataag gatttaaaat ttctatactt ttaatatctt
     4201 caaaattcac ataaatagaa gaattatttt taggattttt aaaagcttca agactgaatt
     4261 taacatcatc ggcactaaat ttcactccat cgtgccacaa aacatcttca cgcaaaaaga
     4321 tatcatagct aagtccatcc ttgctaacat tccacgacgc agctaaatca ggctttaagc
     4381 tcatatgctc atcaaaacgc gtaagtcctg aaaatacaag attaatcact gcatcgtgat
     4441 cctcactata agcaggattt atccttgcga tttcattttc aactgctata ataagtgtat
     4501 cttttgggat ttttgcttct aaattcacaa acaacaacat tgcaaaaatt aaaaatctca
     4561 acataaaaaa cctttttatt ttaataacgc acaaaattat aaaacaaaaa aactcaactc
     4621 gcaagcctat acgggggata aagttatatt ttagttataa
//
LOCUS       DAPIWV010000124         4406 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.126, whole genome shotgun sequence.
ACCESSION   DAPIWV010000124 DAPIWV010000000
VERSION     DAPIWV010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4406
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.126"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            106..1101
                     /locus_tag="RJ272_001584"
     CDS             106..1101
                     /locus_tag="RJ272_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7382636.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVKDRKILNDELVKAGKVF"
     gene            1111..2025
                     /gene="pstC"
                     /locus_tag="RJ272_001585"
     CDS             1111..2025
                     /gene="pstC"
                     /locus_tag="RJ272_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDV7382637.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            2022..3110
                     /gene="pstA"
                     /locus_tag="RJ272_001586"
     CDS             2022..3110
                     /gene="pstA"
                     /locus_tag="RJ272_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDV7382638.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            3107..3847
                     /locus_tag="RJ272_001587"
     CDS             3107..3847
                     /locus_tag="RJ272_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HDV7382639.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDDEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            3909..>4406
                     /locus_tag="RJ272_001588"
     CDS             3909..>4406
                     /locus_tag="RJ272_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7382640.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNSYIYIDDYLTRNYKVAVININYHCIGNRPHLGSSFYLDDIDKFILDTSLK
                     AINLKCINVYGINSYENLNNAFIRIDQEIQKLKLNQQLHQNYKLKTHVSFLPFKNEYQ
                     NFGIMQ"
BASE COUNT         1511 a          574 c          816 g         1505 t
ORIGIN      
        1 atagttaaaa attatattta agaaaaatac aaaataaaaa atgtttccaa aatgtttcca
       61 agttttttta aacttccatt acttttttaa agttaaggag aaaaaatgaa aaaaattcta
      121 tctttaagtg tggcaagtct tgcactttgt ggtgctttaa atgcagcaga tttaaaaatc
      181 gcaggttcat cgactgtgta tccttttact tcttttgtag ctgaagaata tgcttcgatc
      241 aaaaatacaa aaactcctat agtagagagc ttgggaacag ggggtggatt taaggtattt
      301 tgtgaaggaa ctactgatat ttctaatgct tcaagaccta tgaaattaag cgaatttgaa
      361 acttgcaaaa aagcaggggt aactgatata gtagggatga tgataggtta tgatggtata
      421 gttttagctc aaaataaaac caatgctcca ttaaatatca caaaaaaaga acttttctta
      481 gcattagcaa aagaaattcc acaaaatgga aaacttatac caaatcctta tacaaactgg
      541 aatcaaatca ataaaaattt accaaatcgt aaaattagtg tttatggtcc accatcaagt
      601 tcaggaacaa gagatactat agaagagctt gtaatgagtg atgtgtctaa aaaaattcct
      661 gagtataaag gcgagtataa aaccatacgc caagatggtg cttatatccc aagtggtgaa
      721 aatgataatc taatcgtttc caaacttact attgataagg atgcttttgg aatttttggt
      781 tatagctttt tagtgagcaa ttcagacaaa atcaatgctg ctaatatcga tggtgttacg
      841 ccaagcgaag aaagcatcgc agatgaaaaa tacgaacttg caagaagttt gtttatttat
      901 atcaatgcta agaaaaatcc aaaagaagcc tttgattttg caaaaattta tatgagtgat
      961 gatttggcaa aaagtggtgg agagcttgaa aaaataggac ttgttccttt gagtgatgat
     1021 aaattaaaag cttctcaaaa acacgtaaaa gatagaaaaa ttttaaatga tgagcttgta
     1081 aaagctggaa aagtttttta aggaaaaact ttgttaaaag aaaaaataat caaatttgca
     1141 ctttttttat gtgcttttgt aagcgtgata gtaagttttg ctatcatgct tacaatttta
     1201 attgaagctt taaaattctt tcaaaaagaa agcgttgtta cctttttatt ctcaagtcag
     1261 tgggcagctg atgcagcttt tatgaatgca gatggcacga gtaaacaagg tgtttttggg
     1321 gcgctatcgc ttttttgggg aactttttat atttcattga ttgctatgct aacggcttta
     1381 cctttagggg ttatgtgtgc tatatattta ggtgtttttg ctggcaaaaa atctaaaaat
     1441 tacttaaaac ctattttaga aatcattgca gggattccta ctgttgtttt tggatttttt
     1501 gcggctatag ttgtagcgcc ttttatagtg tggttttttt ctttatttgg catacaagca
     1561 agctttcaaa gtgctttagg cgcaggtttt atcatgggga tcatgatagt acctatagtg
     1621 gcttctttat ctcaagattg cattgaagca gtaagcgaga aaaggattaa tggcgcttat
     1681 gctttaggta tgacaaaaaa agaagtggtt tttgccgtga ttttacctga ggctattcct
     1741 ggtatagttg cagcttgtct tttaggactt tcaagagcct taggcgaaac tatgatagtg
     1801 gtgatggcag cttctttgcg tccaaattta actttaaatt ttttagaaga tatgacaacg
     1861 gtaacggtaa aaatcgtaga agctttaagt ggagatcaag cttttgatag ttctttggct
     1921 ttaagtgctt tttctttagg tttggtgctt tttgtcatca ctttaatcat caatatgttt
     1981 agcgtttatc ttatcaatcg ctttcacaaa aggaaaaatt tatgaaaaaa ctttttaaaa
     2041 aaagacaaaa agcttcaaag tcttttaaaa gactttgtaa aatggggctt tatattaatt
     2101 taatttttct ttgtatcttt ttaggaagtg tggcttatct tggatttcct gcttttaagc
     2161 aaacttatat ttttgtagag gctaatagaa attctcctgc ttatgatctt ttatctcgcg
     2221 cagaacaaag aaaaataaga acaggacaaa tcactgaaaa atcttggctt ttggcaaatt
     2281 cagaagtaga tcaatatatg aagcaaaaat ataatcgcct tagtgaaaaa caaagaactt
     2341 tagtcgatga tcttgtgcaa aaaggcgaga tagagcttaa atttaatagc aatttctttt
     2401 taaatgggga ctcaaaatct cctgaaaatt caggaatttt atcttcagtt gtagggactt
     2461 tgcttgttat gcttgtttgt atggttgtga gtgttcctat aggcgttgca gcggcaattt
     2521 acttagaaga atttgcacca caaaatatcc ttacacattt tatagaagtg tgtattaaca
     2581 accttgcaag tattcctagt atcttgtttg gacttttagg acttggagtg tttatcaatc
     2641 tttttggaat gcctcgttca agtgctttag tgggtgggct tactttggcg atcatgagtt
     2701 tgcctattat cattgtttca accaaagcgg ccttaaaaag tgtggatatc aatatgaaaa
     2761 atgctgctta tgccttaggt atgacaaagg ttcaaatggt aaaaggtatt atgttacctt
     2821 tggctatgcc tatgatttta acaggttcta ttttgacttt agcaggggct ataggagaga
     2881 ctgcaccttt gatgattatt ggtatgatag catttatccc tgatgtagca agttcgattt
     2941 ttgatccaac tagcgtttta cctgctcaaa tttactcatg gtcggctatg ccagagcgtg
     3001 catttttaga aagaaccgca gcgggtatta ttgtgctttt aggactttta gtcgtgttaa
     3061 atcttagtgc gatattatta agaaaatatt ttcaaggaaa attaaagtga tagcaaaaac
     3121 aacaaattta aatttatttt atggaaaaaa acaagctttg tttgatatca atatgcaaat
     3181 agaacaaaac aaaattaccg cactcatcgg tgcttcagga tgtggtaaat ccactttttt
     3241 gcgttgtttt aacagaatga atgataaaat cgcaaaaatc gatggtttag tagaaattga
     3301 aggaaaagat gttaaaaatc aagatgtagt agccttacgc aaaaatgtag gcatggtttt
     3361 tcaacaacct aatgtttttg taaaaagcat ttatgaaaat atctcttatg caccaaagct
     3421 tcatggtatg attaaaaaca aagatgatga agaagcttta gtggtggatt gcttacaaaa
     3481 agtagggctt tttgaagagg ttaaagataa attaaagcaa aatgccctag ctctttcagg
     3541 cggacaacaa caacgccttt gtatcgcaag agctttggcg ataaaaccta agcttttact
     3601 tttagatgag ccaacttccg cacttgatcc tattagctca ggtgttatag aagagctttt
     3661 aaaagaatta agccataatc tttctatgat catggttacg cataatatgc aacaaggcaa
     3721 acgcgtagct gattatacag cattttttca tcttggagag cttatagaat ttggtgaaag
     3781 taaagaattt tttgaaaatc caaaacaaga aaaaaccaag gcttatttaa gcggtgcttt
     3841 tggataagat ttattttttg gaaatttgat gatataatta attaaaaatt tccaaaaaaa
     3901 ggtttaatat gattataaac caaatttatt ctatagattc ttgtgatgat gtagaattaa
     3961 atatcaaaag gggaagtaaa ttagaattta gattgactta tgatgatagt aaagaaatag
     4021 aagctattgt ttgtattatt ccaggtggtg ctgaagatat gaatagttat atttatattg
     4081 atgattattt gactagaaat tataaagttg ctgttattaa tattaactat cattgtatag
     4141 gaaatagacc tcatttgggt tctagttttt atttggatga tatagataaa ttcattttag
     4201 atactagttt aaaggctata aatttaaaat gtataaatgt ttatggtata aattcttatg
     4261 aaaatctaaa taatgctttt ataagaatag atcaagaaat tcaaaaatta aaattaaatc
     4321 aacaattaca tcaaaactat aagttaaaaa cacatgtaag ttttttacca tttaaaaatg
     4381 aatatcaaaa ttttggtata atgcaa
//
LOCUS       DAPIWV010000125         4271 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.127, whole genome shotgun sequence.
ACCESSION   DAPIWV010000125 DAPIWV010000000
VERSION     DAPIWV010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4271
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.127"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            42..461
                     /locus_tag="RJ272_001589"
     CDS             42..461
                     /locus_tag="RJ272_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HDV7382641.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTDKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
     gene            465..917
                     /locus_tag="RJ272_001590"
     CDS             465..917
                     /locus_tag="RJ272_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382642.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            914..1474
                     /locus_tag="RJ272_001591"
     CDS             914..1474
                     /locus_tag="RJ272_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HDV7382643.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(1481..2380)
                     /gene="cysM"
                     /locus_tag="RJ272_001592"
     CDS             complement(1481..2380)
                     /gene="cysM"
                     /locus_tag="RJ272_001592"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HDV7382644.1"
                     /translation="MKVYEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2507..2803)
                     /locus_tag="RJ272_001593"
     CDS             complement(2507..2803)
                     /locus_tag="RJ272_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDV7382645.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            complement(2905..>4271)
                     /gene="ciaB"
                     /locus_tag="RJ272_001594"
     CDS             complement(2905..>4271)
                     /gene="ciaB"
                     /locus_tag="RJ272_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HDV7382646.1"
                     /translation="DAMEFLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFF
                     ENEILKLEFAFENMIDQLKIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEF
                     AWMKVKSPLQVGHPLEYYEDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYK
                     NIGLEDCELEKEVLSNIEKTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKI
                     FAFINFVYENAKTKPFMKISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGH
                     IFFIANDTEKTMNQSGFFKNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLI
                     SWQRVDEVRPYYTEGLIHLSLLFESEVLIFENNNLKINFDLRYYEKFKELTLKNYHEL
                     AKHYALRLDAKEFLSRFCEIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFER
                     YKKK"
BASE COUNT         1523 a          700 c          481 g         1567 t
ORIGIN      
        1 taatgaacaa atatttaata ttataaaaat aaggatacaa tatgaaaaaa attcttctct
       61 taggtgctct ttttgctgta aatctttggg ctgttaatga tatagaggta aaaaatgcct
      121 ttgtaaaaca aactccacct catgcgcaaa atagtgctat ttttcttact atttttaata
      181 atactgataa ggatattgct ctaataagtg ccaaaagcga tatcagtgaa gtcagtgaac
      241 tgcatacaca tatacataaa gatggaaaaa tgatgatgca aaaaattcct gaaattatta
      301 taaaagctca ttcaagcaca gagcttaaat ctggaggtta ccatataatg cttttaaaac
      361 taaaaaaacc tattattaaa gacacgaagg taaatttaga tttaaaattt aataatcaca
      421 aaaccataga gttaaaaaat attgattcta aagaatttta attaatgaga aaaattattt
      481 ttatcctagc ttttgctttt gttattgcta ttttatatat tatttttgat ttttatgtaa
      541 taaaagattc tcaaaaaata acaaaaactg atttttctac cccattgact tgcgatctta
      601 atgttaaaga ctgcacatat agttttaaca ataaaaaagt cttaatttcc ctaaatccca
      661 aacccttaca atctttagat gttacaaatc taaagattgt aaatctagga aattataaca
      721 acttaggaat taaaatttat ggattaaata tgtatatggg cgaaattaaa cctaaaatac
      781 atcgattaaa ttcaacagac tatgaaagta aaatagttct tgctgcttgc gttttagata
      841 ctatgcgttt cagggtagaa tttatggata ataataaacc catagggttt tattttgatt
      901 ttgagctaaa aaaatgaaaa aaaatattat tttgtttata gttatagttg ccattatttt
      961 aggtgtaata ttttttatta aaaatcatca aaattcttat gattttatct taaaatcaga
     1021 cttaaaagag gaaaccaccc taaaagattt taaaggagat aagcttatta tctattttgg
     1081 atatacttat tgccctgatg tttgtccggc aactcttagt ttagtaggca aagccttaaa
     1141 gcaaatcaat aatcctaagg ctcaccttct ttttatttct ttagatccaa atagagataa
     1201 taacttaagc aatacaaacg aatggttacg atacttttac ccaaaagcag atgccttaat
     1261 tgcaaaagat gaaaaaactc ttcaaaaaat aacaaaacaa tataatgttc aatatcaaaa
     1321 aatagatcta aatgattctt ttatgggtta ttctatagca catagcaata tgctttatct
     1381 tattgatgaa aaaggtcatt tttataaaga aattagcgat ttaaatccac aagaaatttt
     1441 aagagaactt agaatttttc taaattctca ataattatac ttaagcaaaa agatcagttg
     1501 agaggtatct ttcagccgta tcgtttagca tagttaaaat tcttttatct ggaaatttct
     1561 ttgctagcat acttgcggca aatacatttg ctccacttga tatacctacc attaaaccac
     1621 ttttggcaag ttctttggct gtatttatag catcttcatt acttactgtg atcacttcat
     1681 ctataacttc tttatttaaa atagcaggta taaaattcgc ccctattcct tgtattttat
     1741 ggcttcccgc ttcacctttg ctaagcaatg gagaatttag aggctcgact ccaacaatat
     1801 gcactttttc taatttttct tttagtattt ccccaactcc actaatagta ccgccagttc
     1861 caaaaccagc tacaaaaata tcaagttcat tatccaaatc tcttaaaatt tctaaagccg
     1921 tattcttacg atgcgcattt ttatttgaaa tattttcaaa ttgagaaacc ataaaagaat
     1981 ttggagtatt taataatatt tcatttgctt tatcaaccgc tcctttcatt cctaaatttg
     2041 caggagttaa ttctaaccta gcgccaaaga gtgttatcat ttttcttctt tctaaactca
     2101 tagattcggg cattacagca ataaatttaa gtcccaaatc tgcacaaatc atagccaaag
     2161 aaattccagt atttccacta gttgcttcaa ctattgtagt atcttgatta atttttttac
     2221 tatctaaagc atctttaatc atttcaaaag ctgctctatc ttttatagaa tgactaggat
     2281 ttaaaaattc acatttagca aaaacattga taccaaattt tttcaaatgt ataataggag
     2341 tatttcctat aagctcactt actttttcat atactttcat aattttaata tcctttttta
     2401 tttaataatg atagttttat aaaagtttaa aaaaataaag taaataaaag atataaaata
     2461 tctggatcaa ttaagaaaga aggctagaat ttatctagcc gaagttttat tttttctttt
     2521 tgccgcttgc ttttgcaaca gcttctttaa ggtttttacc taccttaaat tttgcaactc
     2581 ttgtagcagg aactttgatt gtttttcctg tgcttggtac tctagcttct ctagcagctc
     2641 tttcttgagt tgaaaaagta ccaaaaccaa taaaactgat gctatcacct ttagctaaaa
     2701 catcagtaat agtagaaata actgcatcag tagcagtagt agcgtctttt tttgttagcc
     2761 cagctgtttg agcaactaat gaaataaaat ctgctttagt cataaaagct cctttgtttt
     2821 aattgaaacg cctaatttta gcatatttaa aaaacaatat caagtaaaaa acagcttttt
     2881 ttaagttttt ttcaaaaaac tttattattt tttcttatat ctttcaaatt ctccactatt
     2941 atcaatttca ttaccaattt tctcgtataa atcataataa aatttaacaa attctttaca
     3001 cttaggcata ataggaagaa aaatattatc ttcaatttca caaaatctac ttaaaaactc
     3061 ttttgcatca agtcttaaag catagtgttt tgccaattca tgataatttt ttaaagttag
     3121 ctctttaaat ttttcataat accttaaatc aaaatttatc ttcaaattat tattttcaaa
     3181 aatcaatact tcgctttcaa aaagcaagct aagatgaata agtccttccg tataataagg
     3241 tctaacttca tcaacccttt gccaagaaat aagtccaata gctcttttta taagttcatg
     3301 aaaaacaggc attatcaagt catcttgttc atgataaaag aaatttataa gtccacctgt
     3361 agtagcttta tattcttcta tatttttaaa aaaaccactc tgattcattg ttttttcggt
     3421 atcattagca ataaaaaata tatgaccaaa ttcatggcct atagttgata cttcataaac
     3481 ccttttccaa attttttcct gataaaataa aatatttctt ccaaaatcca aaaattcttt
     3541 atcaaaaacc tcgctagaaa ttttcataaa aggctttgtt ttagcatttt catatacaaa
     3601 atttataaag gcaaatattt ttttgcccgc cttagaactt acaaactcat catttggaac
     3661 gacttgagct gagaataaac ctttaagttc agcaccataa aatatcatcg gagtgcaaat
     3721 ataaagttga gttttttcta tattagataa aacttctttt tctaattcac aatcttcaag
     3781 tcctatattt ttataaacat gttcaaaact ttccttaatt tcattaccaa atttcaaaac
     3841 atcaaaatca ttttcatctt ctattcttat atcccattct aatgccaccg catgagtata
     3901 attatcttca taatattcta agggatgtcc cacttgtaaa ggtgatttta ctttcatcca
     3961 agcaaattca gcttcttgcc aagcttttat aaccctatct tcatcttttt cacaaaacgc
     4021 taattttaat ttttcaaaat attctatata agctttttcc tcttcgctgc tagcaaatat
     4081 tttaagctga tcaatcatat tttcaaaagc aaattctaat tttaaaattt cattctcgaa
     4141 aaatctcgca taaggaacaa atttccataa atttcctatt ctaactaaaa caccatagct
     4201 tcgctcacaa atttctcctt ctggagtttt ttgatataaa tgatttttac gtaaaaattc
     4261 cattgcatca t
//
LOCUS       DAPIWV010000126         4198 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.128, whole genome shotgun sequence.
ACCESSION   DAPIWV010000126 DAPIWV010000000
VERSION     DAPIWV010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.128"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..377
                     /locus_tag="RJ272_001595"
     CDS             <1..377
                     /locus_tag="RJ272_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7382647.1"
                     /translation="SLNADIIISADNLPNVSKEFLQHNFKAPIGIVQKDKNSYEVYLS
                     DGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKSEFPNTKAREIERKINHYKIK
                     LDNDIKILIDFNGTILYKEFDD"
     gene            complement(386..2002)
                     /locus_tag="RJ272_001596"
     CDS             complement(386..2002)
                     /locus_tag="RJ272_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HDV7382648.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(2006..3256)
                     /gene="mtaB"
                     /locus_tag="RJ272_001597"
     CDS             complement(2006..3256)
                     /gene="mtaB"
                     /locus_tag="RJ272_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HDV7382649.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(3253..>4198)
                     /locus_tag="RJ272_001598"
     CDS             complement(3253..>4198)
                     /locus_tag="RJ272_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDV7382650.1"
                     /translation="RVSAEIKVQSLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERY
                     YTATKIINFININIIFLILLFAYIENITYLVTILGFASAGLAIAMKDMFMSMLGWCVI
                     IFGGSFRVGDRVKVFQNDTTYIGDIIDISFLRITLYEELTLETYNKNRRSGRIIFIPN
                     NYVFTNLLANYTHHGMKTVLDGIDISVTFDSNLDKAQEIVENIVTRHAKGYTELARKN
                     IARLQHEYSIKNPKVEPRFFMFFEHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNK
                     HKDIKIAYPSQNLYLGNLNQNHFEQHHENMYFHARNKD"
BASE COUNT         1428 a          774 c          465 g         1531 t
ORIGIN      
        1 tatctttaaa tgctgatata ataatttctg ctgataattt accaaatgtt tctaaagaat
       61 ttttacaaca taatttcaaa gcgcctatag ggatcgtgca aaaagacaaa aattcctatg
      121 aagtctatct tagcgatgga acagagcttg aatttgatat agatggagct tggaaggaaa
      181 ttgaaaataa agcctttcct tttgatctag attttttacc tcaaaattta gccaatatca
      241 tcaaaagcga atttccaaat acaaaagcta gagaaattga aagaaaaatc aaccattata
      301 agattaaact tgataacgat ataaaaattc ttatagattt taatggaact atcttatata
      361 aagaatttga tgattaaaca tatcatcaaa cctgcattat atctttaaca tcgtcatatt
      421 ctatcttttc tttttcaagc aaaagctctg ataattttaa aattttatcc ttcatagaat
      481 ttaaaaattc atccatttct tttttttgtt cacttaaatt tgactctttc aacatatcaa
      541 aactcaacat ataatcaagc aattctttaa tctttaaaaa atcatcttgc gagttagtat
      601 aactttcatt gtaaatcaat ctcatggctc tagaaccagc caaataaact tttatacgat
      661 tgataagctc tgattttgat cttatattat gctcatattc tttaaaacga tcttcaatga
      721 gagtgatttt ttcaaatcct atgtcaaaat aatacgcact caaagctttt gcagcttgat
      781 aagtggcttg aattttcttc tcttcatcat taaaacttaa aatctttttc ttacctaaaa
      841 gaactttatt taatacagca taaaaatcgc tttcctcaac taaagcacta tttcttctta
      901 aagcattaat tgctgcttca ttgaccaaag tttcaagccc tgctccacta aaacctacgc
      961 ttgctttagc gattttattt aaattgatat tattgttttt atctttcata taaatttcta
     1021 aaattttaag tctatcctta aaatcaggca aagataaaaa aattctccta tcaaaacgcc
     1081 ccgaacgcaa taaagcagga tccataagtt cgattttatt tgtcgcagct ataacaataa
     1141 ccccactatt atcctcaaaa ccatccattt gagttaaaag ttgatttaaa gtgctatctc
     1201 tttcaacatt tgacatttct cctcttgcct tacctacggc atctatttca tcaataaaaa
     1261 ctatgctagg cgccatcatt ttagcttttg aaaaaagctc tctaactctt tttgcaccca
     1321 tacctacata aatttcaaca aaacttgaac cactttgata aaaaaatggc acccctgctt
     1381 ctcctgcaac tgcttttgct atcaatgttt ttcctacacc aggtgggcct accattaaaa
     1441 caccttttgg catttttaca ccaaattctt tatatttttt aggattttgt aaaaaatcca
     1501 caagttcgct tagctccatt ttaacttcat caacacctgc tacatcatta aaagtaatat
     1561 ttgaaatcac aggttttata tgggaacttt ctaaatttat atttgaattt tgagcttgag
     1621 tgtgattttg attcttattt gatattggat atttagccaa ctctttttta cgagcaaaat
     1681 aaccaagact tataaaaagt gcgataataa aaataagtaa aacaaaaaac acccaaagcg
     1741 tattatcttt tttaacctct acgggaactt ttgataaaag tgtttttata tctatgccat
     1801 cttttataat tacgtaattt tcaccttctg ccttaagcca aatttcgtct ttatcaatca
     1861 cagctttttg gattaaattt tggcttaata gactttgata aagattttca tctatatatt
     1921 taggttcatt tttaaaatat aaaattccca aaagcataca taaaaccata aaagatgcta
     1981 aaattatctt tttatttttc attatctagc cttttaaatt tgtaaagtta gacttttctt
     2041 gtacttcata ttcagatata acgatccatt ctttagctat atctttatca cttttaattt
     2101 tgatcttatt aaaaaactga tcataaccct caaaaaaacc atctttttga ttttctacca
     2161 aaacttcaag tgaaacttga ttttttttcc taaattcata attatttttt tctactatgg
     2221 attttaaagt gtttagcctt tctttagcta aagttccatt tatcacatct ttcatggtag
     2281 cagaatgcgt gttgtttcta gggctaaaaa taaaagcatg gatatgagtg agtggaaatt
     2341 ctttaaaatt tcttaaagct tcttgccata gctcttcact ctcgcctgga tgagctacta
     2401 taaaatccgt ccctaaagca tatcctttgc ttgctatagt attaaaaagc tttaaatcat
     2461 tatccgtatg tgatcttctt ctcattatac gaagcatttt ttcacttgta tgttgcaatg
     2521 caatatgtaa atgcctttca agccaagctt catctaagat ttctaaaaaa ctttcatcaa
     2581 gctgtgcagg ttctaaacta cctagcctta tgcgttttat acctaaaatt tgtcccattt
     2641 tttgcaaaag cttgcctagg gttgtgccat ttttaagccc atatgaacct atattagtcc
     2701 ctgttaaaac aatttcacta taaccattag ctcccaaaat ttcaacctgt tttaaaagag
     2761 ctttttcatc cacacttctt gattttcccc tcacgctagg aataatacaa taagaacaag
     2821 caaaatcaca accttcttga attttcacaa aagctttggt atgattttca tactcacaaa
     2881 ctatatcttt atcaataaaa tttaaatttc caagttcata aaaacttgtc tttgctccta
     2941 aaaattcatt gattttatct ttatttgacg ctccaagcac tccaaaaact tgctttttat
     3001 ctaaaagctc cttacctttg cttacagcac cacaacctgt aagtataact ttaatgcctt
     3061 ttttttgcat ggtatttaca taagacttta tcccgctatc agctccattt gtaaccgtgc
     3121 aagaatttac aacgataatt tgtgctttat tctcatcatt tataatctca taatctttta
     3181 cataactttt taaaagctct gtatcataaa tatttgtgcg acacccaaag gttttaaaaa
     3241 aaactttttc tttcaatcct tattccttgc atgaaaatac atattttcat gatgttgttc
     3301 aaaatgattt tgatttaaat ttcctaaata taaattttgc gatggataag caatttttat
     3361 atctttatgc ttattaaatt cttttataat ctctttgcta atcgtacttc ttaataccaa
     3421 agccgcataa gcattagtca tataccatgc agaaattctc attccccaat gttcaaaaaa
     3481 cataaaaaac cttggctcca ctttaggatt tttaatacta tattcatgtt gtaaacgagc
     3541 tatatttttt ctagcaagct cagtataacc tttggcatgg cgtgtaacaa tattttccac
     3601 aatttcttga gctttgtcaa gattgctatc aaaagtaaca cttatatcaa tgccatcaag
     3661 cacggttttc ataccatgat gggtataatt agcaagcaaa tttgtaaaaa catagttatt
     3721 aggaataaat ataatacgcc cactacgacg atttttatta taagtttcaa gcgtaagctc
     3781 ttcataaaga gtaatgcgta aaaaagaaat gtctataata tctcctatat aggtagtatc
     3841 attttgaaaa acttttacac gatcccctac tctaaaactt ccgccaaaaa taatcacaca
     3901 ccatccaagc atagacataa acatatcttt catagcaata gctaagcccg cagaggcaaa
     3961 accaagtata gttacaagat aagtaatatt ttctatataa gcaaagagca aaataagaaa
     4021 aataatattt atattaataa aattaataat cttcgtagca gtataatatc tttcactatc
     4081 tttaatgtat tttttagcaa taaatttcaa cataaaagct atagctataa caataacaat
     4141 agcaacaagt atatttacag cccttaagct ttgaacttta atctcagcac ttactcga
//
LOCUS       DAPIWV010000127         4190 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.129, whole genome shotgun sequence.
ACCESSION   DAPIWV010000127 DAPIWV010000000
VERSION     DAPIWV010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4190
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.129"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            23..2086
                     /locus_tag="RJ272_001599"
     CDS             23..2086
                     /locus_tag="RJ272_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7382651.1"
                     /translation="MKNIKFKKSLLCFLILSGALLKAEEKYQLNDVVVSASGFEQDLV
                     DAPASISIITKEELEKKPIKDIGEAIGDIPGVDVTMNKTGTYDFSIRGFGSSYTLVLI
                     DGKRQSVANGFYDNGFSGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINIITK
                     KNPDKIEANIEFNTLLQQHSNHYGNAGGFNAYVATPLIEDTLSISARLKYYDKAASDL
                     KWPTPVWNNNNQRPDNYQIASHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEIS
                     VNSTSSRAIKSERQLFKDNIVLNHDGNYDFGSTNSYLQYGSTKDKELHSQIWVGEGKV
                     VLPWNLGQYGNLVNTFGARIDYEILKNDQASAGSQIRGKNLDQTTVALYGENEYFITD
                     DLIFTTGLRYIYSDLFDSEFTPRVYLVYHLNDNIALKGGVSKGYKTPAAKQLTNGYYN
                     YANNNAYFGNPDLKPEESINYELGVDFMVFDFAHYSITGFITDFTNQISSEDLTGMQN
                     DINCSNGIVCKRPINLGKTQTKGIEFAFNTKTYNGFSLNSSYTFMDNRYKDGQKNWFG
                     DDRIENLPRHIAMLKLNYERGKFSSYIKTRARLDTIAKAKGGGNGSLPWQKYKPFYIV
                     DLGINYKINKQSSLSFAVQNLFDKNFFDPQVTRWDGANPAGYANRYQDYIEGRSFWLS
                     YKYDF"
     gene            2169..2765
                     /locus_tag="RJ272_001600"
     CDS             2169..2765
                     /locus_tag="RJ272_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDV7382652.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2797..3894)
                     /locus_tag="RJ272_001601"
     CDS             complement(2797..3894)
                     /locus_tag="RJ272_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HDV7382653.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(3904..4119)
                     /locus_tag="RJ272_001602"
     CDS             complement(3904..4119)
                     /locus_tag="RJ272_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDV7382654.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
BASE COUNT         1401 a          535 c          746 g         1508 t
ORIGIN      
        1 taaaggaatt aatttgactc aaatcaaaaa tataaaattt aaaaaaagtt tactgtgttt
       61 tttaatttta tctggagctt tgttaaaagc agaagaaaaa tatcaactta atgatgttgt
      121 ggttagtgct agtggttttg aacaagattt ggttgatgcg cctgctagta tttctatcat
      181 tacaaaagaa gagcttgaaa aaaagccaat taaggatata ggagaggcta taggagatat
      241 tccaggtgta gatgtgacta tgaataaaac aggcacttat gattttagca tacgaggttt
      301 tggtagttct tatactctag ttttaattga tggaaaacgt caaagtgttg caaatgggtt
      361 ttatgataat ggttttagtg gcagtgagtc aggatatctg ccacctttgt ctatgataga
      421 gcgtattgag gttatacgtg gtccagcttc tacactttat ggcagtgatg ctgtaggcgg
      481 tgtgataaat attatcacta agaaaaatcc tgataaaatc gaagcaaata tagaatttaa
      541 tactctttta caacagcact ctaatcacta tggtaatgct gggggattta atgcttatgt
      601 agcaactcct ttgattgaag atacattatc aatttctgca aggttgaagt attatgataa
      661 ggcagcttct gatttaaaat ggcctacacc ggtttggaat aataacaatc aaagacctga
      721 taattatcaa attgctagtc atagcccagg tgcttttact agcttgggtt ttggttctag
      781 gcttaattgg acagtagatg ataaaaataa tatatatttt gatatagaac gatatattaa
      841 tgaaatttca gtgaattcta caagtagtag ggctattaaa agtgaaagac aactttttaa
      901 ggataatatt gttttgaatc atgatggtaa ctatgatttt ggttcaacta actcatattt
      961 acaatatggt agcactaagg ataaggagct gcatagccaa atttgggtag gagaaggtaa
     1021 ggttgtttta ccttggaatt taggtcaata cggtaattta gtaaatacct ttggtgcaag
     1081 gattgattat gagatattaa aaaatgatca agcaagcgca ggtagtcaaa taagaggtaa
     1141 aaatcttgat caaaccacgg ttgcgcttta tggggaaaat gagtatttta taaccgatga
     1201 tttgattttt actacaggtt tgcgttatat ttatagcgat ttgtttgatt ctgaatttac
     1261 gcctagggtt tatttggttt atcacttaaa tgataatata gccttgaaag gaggtgtttc
     1321 aaaaggctat aaaactcctg ctgccaagca gttgacaaat ggatattata attatgccaa
     1381 taataatgct tattttggaa accctgactt aaaaccagaa gaaagtataa attatgaatt
     1441 gggtgttgat tttatggtat ttgattttgc acattattct attacaggat ttattactga
     1501 ttttacaaat caaatcagta gtgaagattt aacaggtatg caaaatgata ttaattgtag
     1561 caatggcatt gtttgtaagc gtcctattaa tcttggaaaa acgcagacta aaggtataga
     1621 atttgcattt aataccaaaa cttacaatgg ctttagccta aattcaagtt atacttttat
     1681 ggataatcgc tacaaagatg gtcaaaaaaa ttggtttggt gatgatagaa tagaaaattt
     1741 accaagacat atagcaatgt taaaattaaa ctatgagcga ggtaaattta gttcctatat
     1801 aaaaacacga gcaagacttg atactatagc taaagcaaaa ggtggcggta atggtagtct
     1861 gccatggcaa aaatataagc ctttttatat agtagattta gggataaatt ataaaatcaa
     1921 taagcaatct agcttaagtt ttgcagtgca aaatcttttt gataaaaatt tctttgatcc
     1981 gcaagttaca agatgggatg gggctaatcc tgctggatat gcaaatcgct atcaagatta
     2041 tatagaagga agaagttttt ggttaagtta taaatatgat ttttaatttt ttaaggcttt
     2101 aatcaccttt atattttcaa aaaagcaaaa ataaagtaca atgtgaaaaa taaataaaag
     2161 gttttattat ggcgtttaaa aatttaaaag aactttcttt tgaaaaatca aattatatta
     2221 agcctaagag atttgcttat gaaagtaatg gtaggctttg cacttgggat tttatagaat
     2281 ctaaagatag tgtttcagtg cttttgtatc ataaagaatt agaaagtttt atttttgtac
     2341 gccaatttcg tataccactt tggtatcatc aaatgcatga taaagattat gtaaaagatg
     2401 atgatatggg ctatactata gagctttgtt ctgggcttgt ggataaaaaa ttatctttag
     2461 aggaaatagc aaaagaagaa tgtatagaag aactaggata tgctcctaaa aatttagaaa
     2521 aaataggaga tttttataca gggtttggtt caggtgtaag caagcaaagc ttttatttcg
     2581 tagaagttga tgaaaaagat aaaatttctt ctggaggtgg agttgatgat gaagagattg
     2641 aagctgttta tgttaaggtg caggattttg aaaaaaaatg taaaaatatg ataagaacgc
     2701 ctttgcttga ttttgcttat atgtggtttt taaaggaaaa gtggggaaaa ttaaagatta
     2761 tttaggttaa accttaaaaa ggttcaacct aggattttaa tgatctgact catcaagcat
     2821 ttctttaaat acattgaaaa gatcaagcga tgcattttca gcaacttcgc atttattaat
     2881 tatgctgtgt tgagtaatat ctttgctaat atcttctgta tttgctattg ttatagcatt
     2941 attcatattt tcatgaactt tttcatgtgg ctcgttaatt tttaagaagc ttttattttg
     3001 cccaaatctt tcttttcctg tgctagcaag ccattttcct aagcgacaag atgtatgatc
     3061 ggctaattgc tttcctgatt tggaaaaaat ttctttataa ccatttaatt taaaagctat
     3121 atgatctagt tttgctaaag atacgaaagc ttctgaagcg ataccaactg catttgaatt
     3181 agtagaatgc gcttcattta ctaagtgagt aaatttttcg gaaaaactca taatatgagc
     3241 attagaatct atagaaattt tttcaacttg ctcactttga gtatacattt catttgcatt
     3301 ttgctttaga aggttgatat tcatttcaac ttctgtggtt gctttttgtg ttttttcagc
     3361 tagttttctt acttcatcgg caacaacagc aaaaccacgc ccatgttcac ctgcgcgtgc
     3421 agcttctatg gcagcgttaa gagctaaaag attggtttga tcggaaacat ctttaattag
     3481 attaattaca ttagtaattt catctacact tctatgcaat gttcctgcaa catctcttgt
     3541 tttattggct gattctgtaa tatttcccaa agaggcattg atagaattag caatatggtt
     3601 aagttcatcc atttcagcaa gagaagtttt agaatagcta gagataactt ctgccttatt
     3661 tacattttct aacatatcgc cttgaataat agtaatattt tttaaaaccc cagttaataa
     3721 aacatttaaa agatctgttt taagtttaga ctctaaagcc gcttgttcta atgatgtaat
     3781 tttatttttt aattctaaat tttccgattg aaatttttca attttatgtg taagattttt
     3841 attttcttct tcaagttttt gaagatcaga atggtttatt ttacttccaa acattgtttt
     3901 gccttatttt ttataatttg ctagatattg gctaagttca tcttttacat gaagcttttc
     3961 tttttttaaa gttgaaattt ccatgctgct aagagaagtt ctaccttctt ctgcatcttt
     4021 aatcatgtca tcaagttcat tatgacgatc aaatagttta tcaaaatgag catctttacc
     4081 ttttagctct gacattaatt ctctatattc atgtagcata aactctcctt gtattagtga
     4141 aatttaaaat tcatttaaca aggtatttta cactattaaa agatattttt
//
LOCUS       DAPIWV010000128         4136 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.130, whole genome shotgun sequence.
ACCESSION   DAPIWV010000128 DAPIWV010000000
VERSION     DAPIWV010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.130"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1220)
                     /locus_tag="RJ272_001603"
     CDS             complement(<1..1220)
                     /locus_tag="RJ272_001603"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDV7382655.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(1214..2038)
                     /gene="galU"
                     /locus_tag="RJ272_001604"
     CDS             complement(1214..2038)
                     /gene="galU"
                     /locus_tag="RJ272_001604"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDV7382656.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2120..4093)
                     /gene="acs"
                     /locus_tag="RJ272_001605"
     CDS             complement(2120..4093)
                     /gene="acs"
                     /locus_tag="RJ272_001605"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HDV7382657.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITIIGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPDLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1315 a          852 c          545 g         1424 t
ORIGIN      
        1 taagaattta atatattttt taagatcaac tttccaactt ccacaccagg ttgatcatag
       61 gtgttaatcc ctagcataac accgcaagtt gaagtaaaaa gttcataata atacatcaaa
      121 tatcccgcat gccaagcatc aagtttttca agttctatca catcaacact caaattttca
      181 gcgattaaag cgtgcatagt tgcattacat tgagcgttta aaagttcgtg aagattgact
      241 ttattactta aagaatctaa aaatttaaaa tgaatatcag ggataatagg tgctttttga
      301 gcgtctttga tttttaaaaa agttacagtt ttatttttag gtccatccat aatgagttgt
      361 aaaaaactat gctgatctct tgctccaatg agtgcaatag gagttaaacc tatacgttta
      421 tagccttgct ttttacctaa actttcagca ataagctgga tataccattc attaaagcct
      481 ttaaaagcat cactatatga aaaaagtaca ttgatattgg catttttgtg tgtgcaataa
      541 tgataggctt tttgtaaaat ttcatctttt ttatgagtaa aaaaatcttc aaaacaagct
      601 ttagctcctt ctaaaagagc tttggcatta tagccacaaa aacaaagcgg aactatacct
      661 acggctgaaa gtatgctaaa acgacctcct acatttgcag ggataaaaaa gcatttaata
      721 cctaaatttt caccttcttg atgaagtttt gaatccttat cggtaataaa aacaaagtat
      781 ttttttaatt cttgcatatc aagtttaaaa tgttcaataa gaagtttaaa aagcgataca
      841 acttctatag tactacctgt tttgctgatg attaaaaaca aactttcctc aagcttgatt
      901 ttttctaaag tcttattaaa agaatgtgaa cttgtgttat cgagtataaa aagttctctt
      961 tggttgcttt tttcattaaa aagcatatca cgcaaggctt ttacaccaca acttgaacca
     1021 cccattccca ctaaaacgat attttttatg tgttctttgt ctttgataaa agccaaactc
     1081 tcatcgatta aattcaaact tgtatcaata agatgataat accctatatc tccacttttt
     1141 acctcatcat taatacgatt tgcataagaa cttatagtgt gaatttcact ttgcttaaaa
     1201 aaaagtgtat tgtttaacat ttacttttct cgtaaaaata atttgtcgct tctacaaagc
     1261 cttctacact tccacaatca aagcgttttc cttgaaattt ataagctaaa accataccat
     1321 tagttgcttg agttaaaagc gcgtcggtaa gttggacttc accatttttt cccgctttag
     1381 tattttctaa aattccaaaa atatcaggag ttaaaatata tcttcctatg atagcaagat
     1441 tacttggagc ttcatcagga cttggttttt ctatcataga attaaccatg ataagatttt
     1501 cttctacaaa atttccagaa attactccat agtttgaaac ttgctctttt ggtacttcca
     1561 tcacagctat gatggtgcag cgatattttt cataaatttt taccatttga gccataacat
     1621 ttaagccttc ttcattaaca cacaaatcat cagccaaaat tacgccaaaa gcttcatcgc
     1681 caaccaaagg tctacctttt aaaaccgcat cacctaagcc tttcatttga ttttgtcttg
     1741 taaaagtaaa ggtacaacga ttgatcaaag agcgaatttc atcaagtaag tattcttttt
     1801 ttgtacctga aatttgatgt tcaagttcat aagaaatatc aaaataatcc tccaaagctc
     1861 tttttccacg ccctgtgaca aatcccatat tttccattcc tgcttctaaa gcttcatcaa
     1921 ctccataatg gatcaaaggc ttggttaaga taggtaacat ctctttaggt aaagtttttg
     1981 ttgcaggtaa aaatctcgtc ccataacctg ccgcagggaa aatacaagtt tgaagcataa
     2041 aaatttcctt ttattttttt atcattatag cttattttta tgaattttca tgcaactagg
     2101 caaagttctt tttaccttgt tattcaaact ctgccttagc taatttaaca atggtttcta
     2161 ctactttaga atcttcaagt gttgaaatat cctgtttgat ttcttcacct cttgctatag
     2221 ttcttaaaat tcttctcatt attttaccac ttctagtttt tggcaaatct ggagtataaa
     2281 gaattttttc tattttagct ataggtccta tttctactct taaaatgtca ttaagttctt
     2341 ttaaagtttc tatagctccg ccaagatcac aactggatgc aggacttaaa accacaaaag
     2401 caaacaatga ctcgccctta atcgtatcca aaatactcac tacagctgat tctgctacac
     2461 ttggatgttt agcaatagcg ctttcaattt cagccgttcc tatacgatgt cctgcaacat
     2521 taaccacatc atctgttctt cctatgatgg taatataacc atttttatca taaaaagcac
     2581 catcgccact aaaatataca gcttttccat cttttttagc ttgagaaaaa taactttcta
     2641 tatagcgttc atcattgccc caaattccac gaatcatcga aggccaaggt ttagttatac
     2701 aaagcaaccc atcttcacct tcatcttttt tattgccttc ttcatcaata acttctgcaa
     2761 aaatccctgg caaaggcaag gtggcacaac ctggttttaa aggagtggcg cctggtaaag
     2821 gcgtgatcat atgcccacct gtttctgttt gccaccaagt atcgactata ggacttttag
     2881 ttccccctat ttcatcataa aaccacttcc aagcactagg attgataggc tctccaaccg
     2941 ttccaagcac ttcaagcgta cttaaatcat attttcttgg ctcattaggt gcatcagcat
     3001 gaagcattct tatggcagtc ggcgaagtgt agaatttgct tatttgatac tcttctatca
     3061 ttctccacca acgcccagaa tttggataag taggagttcc ttcatgcatt atagtcgttg
     3121 ctccacatgc taaaggccca taaactacat aagtatgtcc tgtaatccaa cccacatcag
     3181 cactacacca ataattatca taatctttaa tatcaaaaac ccattccata gtcatttgtg
     3241 cccaaagtat atatcctgca cttgcatgca taactccttt tggcttgcct gttgatcctg
     3301 aagtgtaaag caaaaacaac aaatcctcac tatccataat ttcgggttca cacttataag
     3361 actcattttt cacaagttcg ttataaacat agtcccttcc tttaatatat tctataggct
     3421 cattattgcg tataactata agtacttttt ctacactttc acacccttca cttaaagcct
     3481 tatctactgc aggttttaac atataaggtt tgccacgacg aaaagcacca tcagccgtta
     3541 ctacaagttt agctcctgca tctataattc tatctcttaa ggcttcagga gaaaaccctc
     3601 caaatactac actatgaata gccccaatcc ttgcgcaagc taacattact atagctgttt
     3661 ctggaatcat aggcatataa attacaaccc tatcgccttt ttttactccg aattttttaa
     3721 gcaaattggc cgccttgcaa gtttcatgca ataatcttct ataagtataa acttcataat
     3781 cccccatttc accttcaaaa atcaaagcag ctttattgcg tcttgttttc atatgacgat
     3841 caagacattg ataacttaca tttaaagttc caccttcaaa ccatttataa aatggagctt
     3901 tatcctcatt taacactctt gaaaaaggcg aaaaccactc gatcttctca agtgcttgtc
     3961 ttttccaaaa accttcaaaa tcttccttgg cttcatcgca taaatcatag tattcacata
     4021 aattttttat acgagcatta cgagaaaatt ctttacttgg cttaaaaagc tcttgattat
     4081 tttgattaag cataaaaact cctttatggt tatttttaaa cattatataa gagttt
//
LOCUS       DAPIWV010000129         4102 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.131, whole genome shotgun sequence.
ACCESSION   DAPIWV010000129 DAPIWV010000000
VERSION     DAPIWV010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.131"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            87..758
                     /gene="hsrA"
                     /locus_tag="RJ272_001606"
     CDS             87..758
                     /gene="hsrA"
                     /locus_tag="RJ272_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HDV7382658.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            871..1116
                     /locus_tag="RJ272_001607"
     CDS             871..1116
                     /locus_tag="RJ272_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDV7382659.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1116..2576
                     /locus_tag="RJ272_001608"
     CDS             1116..2576
                     /locus_tag="RJ272_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7382660.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDSYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2573..3370)
                     /locus_tag="RJ272_001609"
     CDS             complement(2573..3370)
                     /locus_tag="RJ272_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382661.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVIFDHANKRYTMIIGNSNV
                     LLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(3371..3679)
                     /gene="fliN"
                     /locus_tag="RJ272_001610"
     CDS             complement(3371..3679)
                     /gene="fliN"
                     /locus_tag="RJ272_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HDV7382662.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(3679..4101)
                     /locus_tag="RJ272_001611"
     CDS             complement(3679..4101)
                     /locus_tag="RJ272_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HDV7382663.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
BASE COUNT         1489 a          627 c          551 g         1435 t
ORIGIN      
        1 aatattaatt tttttttaaa gatatctaaa catttactta agctatgata taattcttta
       61 aatttttctt aataaggata gaacaaatga gaattttagt tatagaagat gagattagcc
      121 taaataaaac aattatagac aatcttaatg aatttggtta tcaaactgat tcttctgaaa
      181 attttaaaga tggagaatac tttatcggca ttagacatta tgatttagtt ttagcaaact
      241 ggactttacc tgatggagat ggagcggaac ttgttaacac tattaagcat aaatctccaa
      301 gaacttcggt tatgattatg tcttcaaaaa cagacaaaga aacagaaatc aaagctttga
      361 aagctggagc tgatgatttt gttaaaaaac ctttagattt tgatattcta ctcgcaagaa
      421 ttgaagcaag actaagactt ggcggaacca atgttattaa aattgaagac ttagttattg
      481 atccagatga ggaaaaaatt acttataaag gtcaagatat agaacttaaa ggaaaacctt
      541 ttgaagtttt aacgcactta gcaagacatt cggatcaaat tgtatccaaa gaacaacttt
      601 tagatgccat ctgggaagaa cctgagctag taactccaaa tgttatcgaa gtagctatca
      661 atcaaattcg tcaaaaaatg gataaaccat taaatatatc taccatagaa acagttcgtc
      721 gtagaggata ccgtttctgc ttccctaaaa aatcttaaca attttgcacc ttcggtgcaa
      781 aaaatttatc tttatttcta tttttatatt ttatttaagt ttggttattg tataaactaa
      841 aattattttt taaatttttg aaaggttatg atgtctcttt taattacaaa agactgcgta
      901 tgttgtgatg cttgcagaga agaatgtcct gatgaagcta tttatgaaaa tagtccaatt
      961 tatgtaatag accctgatct ttgttcagag tgcgttaatg atttttcaga gcctgcctgt
     1021 attgttgctt gcccatatga atgtatcatt cctgatcctg ataatgtaga aactatagaa
     1081 gaattaaaac tcaaacatag agatagagaa ttttaatggc aaaaaaaaca gccgttgttg
     1141 atcttggctc aaactccatt agaatggtga tttttgaaaa aacttctaga tatggttttt
     1201 atacaacttg cgaatacaaa cgcaaagtaa gacttggaga aaatgcttat aataatggca
     1261 aaattctcca agaagaagcc atgcaaagag ccgaagatgc cttagctttt ttcaaacaat
     1321 gcgctttaaa gcataagtgc aaaaaaatat ttatagtagg cacatcagcc ttaagagatg
     1381 ccccaaattc aaaaaatttc attaaaagaa tcaaagataa tctgtcttta aatatacgct
     1441 gtatagatgg aaaaagcgaa agttacttag gtggtcttgc agctctaaat ttattaagtc
     1501 cttttaaaga tggaaccact ttagacatag gtggtggttc tagtgaattg tgtttaataa
     1561 aaaataatag aattatttct tgcatatctc ttgatattgg cactgttagg ctaaaagaat
     1621 tgttctatga tactggaaaa atggattctt tagaagaatt tataaaacca attttagaac
     1681 aaattcctaa agaattttgc aatcaaaacc ttattgcaat aggtggaagc ttaagagcaa
     1741 tatctaattc catcatgcaa aaaaattcct atccactgaa aaatttacat gattttcgct
     1801 atatgctaga tgaagaaaaa ggacatattt taaaaatttt taattcaaac ttagactctt
     1861 taatcaattt tggcataaaa aaggatcgtt ttgataccat taaagagggt atatttattt
     1921 ttttaaagat tgcggaaaaa ataaaagcca aacaagttat cacgagtggg gttggaatca
     1981 gagaaggagt ttatttgcaa gatttgcttc gtcctaaaat cacttttcca ccaaatttta
     2041 atcctagctt aaaatgttta caagataaat ttttacaatc aaaacaaaaa aataaaactc
     2101 cacattttgc tctgcaaatt tttacaaccc ttaaaaatct tcataaactt aacgatagct
     2161 ataagcatac tttactaaat gctgccaaat tatgccatat tggagaatat ttaaatttct
     2221 attttgctaa tgaacactct gctcattttg tactaggtgg attaaattat ggattttcac
     2281 ataaagaaaa agctttaatt gctagcatta ttaagcttaa tggaaaaaaa gttaaccctt
     2341 ataatcttga accctataag caacttttac ccaatattca taccatttca tggcttaatt
     2401 ttattttgtg cctagctaaa actttaagca caaatgaaga taagattgat tttgcttttg
     2461 caaacaatac tctttatata tatcaagaaa acaaaattct taatttaccc aaagatgagc
     2521 tcaaaaaaat tgcaaaacca gctaccatag cattagcaat caatcaaaaa atttaagatt
     2581 ttttaccttt ttgacgctgc tctataagat tttgaattct ttttttattc tcttcaaaaa
     2641 aagaatcaaa atttttctct gttttttctg tatgttttat tgtttgttcc tctggaattt
     2701 caacactttc taaaagcaca ttggaattac ctattatcat tgtataacgt ttattagcgt
     2761 gatcaaaaat aacaagttga ttatttttat ctaaaaatct ttggaaaatc atagtaaaat
     2821 ctctagaaac attgttattt ttataaacca tagtcttttt aaaccaccaa agcactatta
     2881 acaaaataac taaaattagc attactaaga tataatttgt ataatcatac ccttctaaac
     2941 ttgtactttt tggtttaggc attaattctt gagaattatt cacagtagtt gtaggtacag
     3001 attcgatatt tgcttttcct tgctctatag ctcgtatcct tactccaaat ttatcattga
     3061 tagagctaag ttctaaatta atattttgtt tgttttgtag cataatatag gtattattat
     3121 ttttagaact aatactaatt ttatctacaa gttgagagtt aagttctttt aattcatctt
     3181 tagaatacgt taaatcacta aaagttaaaa gagttaaatt tttttctttt ttttgagaaa
     3241 tcttgccatt ataggcatta tcaaaagaaa gcattaaatc tactcgatca tttctatcgt
     3301 agatattaaa actaatcagc tcaacactat ataaaggtaa aattaaaaaa aataatacta
     3361 gcaatctcat ttaaatttct tttttaaagt attgaagcac agtcttagaa tccaaaattt
     3421 cattaattct tatagcgaga tttttttcat aaaccataac ctcgcctttg ccaaaaattc
     3481 ttttattgat ataaagctca acgctttctc cagcaggctt ttcaagatca ataaccgaac
     3541 ctacttcaag ttttaaaagc tccgctacac tcatatttgt agttccaagc tcgcttacaa
     3601 aatctactgt aatatctaag atatcttcat aagattgtaa aagcccatga tgaatgttaa
     3661 actctatatc atcgctcatt atttgcaata tcctattcta aaataacaat tttcaaattt
     3721 ataagttaaa gcttcatcta aaactatttc agaaaaatca acttttccta aatattccgg
     3781 aattccgagt ttatactcgt catcaccctt ggcatcattt aacaaatttt tagcataacc
     3841 tataatctga ttggcacatt ctttagttaa atcgcaccag tcatcttctt taaatttttc
     3901 atcattaatt aaaatttctg caattttttt taaaaattct tttggaaaaa ataaataaaa
     3961 attacattct ccttcgcttt tgcccatgat aggaatactc gctccataaa gttcaccgct
     4021 tatatcttga gctgcttcaa tgcgaagtct taagatatgc tcgcaaaaat gagtgatgga
     4081 atactcaaga atctttaaca ta
//
LOCUS       DAPIWV010000130         3993 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.132, whole genome shotgun sequence.
ACCESSION   DAPIWV010000130 DAPIWV010000000
VERSION     DAPIWV010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.132"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..350
                     /locus_tag="RJ272_001612"
     CDS             <1..350
                     /locus_tag="RJ272_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7382664.1"
                     /translation="LDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVEIL
                     GKEPKSKDLQKLITLMKNKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWEN
                     ELLKTADAFSHNL"
     gene            363..1217
                     /locus_tag="RJ272_001613"
     CDS             363..1217
                     /locus_tag="RJ272_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDV7382665.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQKKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            1210..2013
                     /locus_tag="RJ272_001614"
     CDS             1210..2013
                     /locus_tag="RJ272_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDV7382666.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKKLGFI
                     MVLASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(2002..3339)
                     /locus_tag="RJ272_001615"
     CDS             complement(2002..3339)
                     /locus_tag="RJ272_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HDV7382667.1"
                     /translation="MKTSNTFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNEN
                     LLGFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYEL
                     DNISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFL
                     DEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAP
                     NRLIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLL
                     WCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLI
                     SKNDENCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKFKIY
                     DIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVCFAPLPF"
     gene            complement(3339..>3993)
                     /locus_tag="RJ272_001616"
     CDS             complement(3339..>3993)
                     /locus_tag="RJ272_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7382668.1"
                     /translation="KIKKEILKSYIIIIDEINRGNVSKIFGELITLIEPSKRIGEKEE
                     LKVTLPYSGKEFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKLSMDC
                     EGINLQELLKAINTRIEYLLDREKTIGHAFFISVENLEDLKKVFKNKIIPLLQEYFYN
                     DYALIDAVLNKNGMLEISVENKDYLKNMTEFIESDKIVYKFSDSNNWSKDTFIKIYE"
BASE COUNT         1326 a          594 c          539 g         1534 t
ORIGIN      
        1 aattagatag tttaaattta caaattgcct caaaattaga aaaattaaaa aatagagaat
       61 ttgtagttta tcatccttct tggacatatt ttgcaaaacg ctataatctt acgcaaattc
      121 ctgtagaaat tttaggcaag gaaccaaaaa gcaaagattt gcaaaaactt atcactctaa
      181 tgaaaaataa aaatttaaaa gtcatttttg ttcaaaatgg tttccctgaa aatgcagcaa
      241 aaacacttgc taaagaatgt gatgcaaaaa tttacaaaat agatcattta tcttatgatt
      301 gggaaaatga gcttttaaaa actgctgatg ccttttctca taatttataa tcaggttttt
      361 tgatgctttt ttttgaaatt tctaatctaa actacgctta taataatgaa atcatcttaa
      421 aaaacatcaa tcttagctat gacaataaag actttctctc tatcataggt ccaaatggcg
      481 caggaaaatc aacactcgta aaacttatct taggactttt aaaatccaaa aatgaaatcc
      541 atttcaaagc tcttcaaaaa aaagaaatag gctatgttcc tcaacacact ctagccaatc
      601 ctaatttttg tccaagagta cttgaaatcg ttcttatggg acttgtaagt aaaaaaattt
      661 ttggttttta tgggaaaaaa gataaagaaa aagctatgca agctttaaaa agtgtaggaa
      721 tggaaaaatt ttggaacaaa accattgatt ctctaagtgg aggacaaagg caacgtgttt
      781 ttatcgcaag agccttagct agtgaatgca aaatgcttat tttagatgaa cctaccgcaa
      841 gcgttgataa caagtctgct atacaaattt ttgaacttct aagctctttg caccaaaaag
      901 gcatgggaat tttactcatt tgtcacgata tcaaccttgt attagcttat agcgataaaa
      961 ttgcacattt aaacaaagaa cttttcttgc atactaacac taaagaaaaa gaaaaaagtt
     1021 catttttaaa acatttatac gaaaatcact ctcatttttg tgatgtagaa atgagtttaa
     1081 atacttgttt ttgcgatgaa aaaaattgcg atagcaaaaa actatgcgaa caagaattta
     1141 caagaagaaa tttgaaaaaa acagaattta aaaaagaaaa tttttgttta aaattttcaa
     1201 aggaaaataa tgcttgaaat tttaaatttc accttttttc aaaacgcttt actaggagcg
     1261 attttagtca gtatagcttg tgggatcata ggtactttgg tgatgataaa tcgccttttt
     1321 tctatggctg gaggtataac acatggggct tttggtggta taggtatagc tttttatttc
     1381 tctttgccta ttttattaag cacgggaata tttactttat ttttggcttt tttagtagct
     1441 tttttagcta aacgctatga acacagaagt gatagtatta tcgctgtaat ctgggctttt
     1501 ggaatggctg ttgggattat tttaatcgat ttaagcccta gttataacac agatttaatg
     1561 gcttatcttt ttgggagcat tttagctgta gggacgcaag atttatggct tatggctttg
     1621 gttgatagcg tggtggtgct tttgatcttt ttattttata gacaatttga agcattaagc
     1681 tttgatgcgg aatttgcaaa agttcgtggt atcaatacaa gtttttttca ttatctttta
     1741 atcgccctta tggctttttg tatagttatt tctatacgcc ttgtagggct tattttggtt
     1801 atggctttac ttagtatccc aagctttatt gctgaaaatt tcaccaaaaa acttggcttt
     1861 atcatggttt tagcaagttt tttaagtatg attttttgtg ttttaggact tatacttagc
     1921 tattatctta acctctcaag cggtgcttgt atcatagctg tagcttgttt tggtttttta
     1981 atgcatttga taggcaaatt tttaaaaagg taaaggtgca aaacacactt gcacttttat
     2041 atctttttgc ccttgttctt taaaatacaa atgttcgctt gccttaaaaa caaaaaattt
     2101 ttctgcgatt tttctttgta aatcttgagt tttttcacat aaaggataca caagtttaat
     2161 atcataaatt ttaaatttgc aagcataagc aaacatttga tacaaatcgc tttgttctat
     2221 accctgtttt ttctcatctt cactatcatt tggaattttc catttggtat ctaggatcat
     2281 tttattttct atatataaat caggctttaa catgaaacaa ttttcatcat tttttgagat
     2341 taaatacttt ccattgtttt gaactttaat atcttgagct ggatttactt tttttagcat
     2401 ataagctaca taatcttcaa aaattttctc cataggaaaa agcaaagcaa aagcttcatt
     2461 tttaccatga taaggcataa aactttcatt ttttaagaaa attttacacc acaaaagcaa
     2521 gttttcataa taatcaaaat gtcttgaaat tttataacta aaatcttttt cataattttt
     2581 agaaaattct acctcatcga gaatttgcat agattttata agtctaaatt tattcaaact
     2641 tgtttttgat tttaaaaaat ttagcgttga ttttatcaaa cgattgggtg ctatatctaa
     2701 aacaaactca tcattgcttg taaaaaatct ttctttgtgt atcaaatttc gcttgatatg
     2761 ctcgttaaat agtaattttc cctttaaaaa agccctattt tcttcgcaac ttagataaga
     2821 tctcatcaag ccttttttat atacgctatc aaattcatct aaaaacatag tgataaacac
     2881 ttcaaataaa ggaattttag aactttgcaa agatgaaatt tgcgattttt taaaggggga
     2941 gttttttaag gtttttagca tatttatcaa aagattttta ggattaaatt taaaatcttt
     3001 ttcataaaaa tcattatttt tagaaatatt gtctaattca taacatcttc ttagtttttc
     3061 tttgtcatga tttgaagaac tatcttcttt tttataacta tctaaattcg tgcattttgg
     3121 caaaatctcc aaaaccccgc ttttagtctg tataatgccg acataatttt tagcttttaa
     3181 ggaatttttg tttttaaagc ctagaagatt ttcattattt tttgcaaagt cttctagctc
     3241 tttataaaac ccttcggcct tttctttgaa aatttctttt aaatcttctt tagaaaaagc
     3301 ttggtattcg atgatggaaa aagtattact tgttttcatt attcatatat ttttataaaa
     3361 gtatctttac tccaattatt actatcacta aatttataaa caatcttatc actttctata
     3421 aattctgtca tattttttaa ataatcttta ttttcaacac taatttccaa cataccattt
     3481 ttatttaaaa ctgcgtcaat caaagcatag tcattgtaaa aatactcttg caaaagtggg
     3541 atgattttat ttttaaaaac cttttttaaa tcttctaaat tttcaacact tataaaaaat
     3601 gcatgaccta tggttttttc tctatctagt aaatattcta tacgagtgtt tatagctttt
     3661 aataattctt gtaaattaat accttcacaa tccatagata atttgctcac atcaggcatc
     3721 atctcaataa attcaaatct tcttcgcaaa gctgtatcaa gagaagttat gcttctatcg
     3781 gctgtattca tcgtgcctat gatataaaca tttttaggca ctccaaattc tttgccacta
     3841 taaggcaaag tcacttttaa ctcttctttt tcgcctatcc ttttgctagg ttctatcaag
     3901 gttataagtt caccaaaaat cttacttaca ttaccgcgat tgatctcatc tatgataatt
     3961 atgtaagatt tcaaaatttc tttttttatt tta
//
LOCUS       DAPIWV010000131         3818 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.133, whole genome shotgun sequence.
ACCESSION   DAPIWV010000131 DAPIWV010000000
VERSION     DAPIWV010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3818
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.133"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            8..874
                     /locus_tag="RJ272_001617"
     CDS             8..874
                     /locus_tag="RJ272_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDV7382669.1"
                     /translation="MEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGILFE
                     RLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHFLAP
                     ILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEINFWQ
                     DDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLNIFLEL
                     DRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRKNYNFN
                     RALEKFEKIFKS"
     gene            954..2822
                     /gene="rpoD"
                     /locus_tag="RJ272_001618"
     CDS             954..2822
                     /gene="rpoD"
                     /locus_tag="RJ272_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDV7382670.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2838..3350)
                     /locus_tag="RJ272_001619"
     CDS             complement(2838..3350)
                     /locus_tag="RJ272_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDV7382671.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(3347..3817)
                     /locus_tag="RJ272_001620"
     CDS             complement(3347..3817)
                     /locus_tag="RJ272_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDV7382672.1"
                     /translation="MSYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLF
                     QFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLM
                     GFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         1640 a          555 c          547 g         1076 t
ORIGIN      
        1 caaagatatg gaaatatttt tagatctttt aaacactcaa agtccaactc atacagccaa
       61 caatttttcc ataactcaac ctaatgtttc aatagtaatt aaaaatttag aaaataaatt
      121 tgatggcatt ttatttgaaa gacttggaaa aaaactctta cctacaccaa aagctttaga
      181 actaggaaaa aattggttaa aaattataca agcctactac caaagcttag aaaaattaaa
      241 cgacgaaagt atgctcttag gggaaataaa aatagcctca actcaaagca tttctgaaca
      301 ttttttagct cctattttat ttgattttaa ggcagaattt aaaaacatag aaattcgctc
      361 tcaaacgcag aattcaaaag aatgtttaaa tttactaaaa aacggaaata tagaatttgc
      421 aatcattgaa gcagaacttg atccagcttt agtggagtat gaaaatttag aaataaattt
      481 ttggcaagat gatgaactta tagtagctac aagtgataaa aaactcaatg aaaaagaatt
      541 ttatatcgat gaacttttgg aacaaaagtg gattttaaga gaagtaggct caggcttaag
      601 ggataaattt ttaaacgaaa ttggtgcaag ctcaaaaaaa cttaatattt ttcttgaact
      661 tgatagaatg gctgcgatta aagaacttgt tttacaaaaa aaagcaatct ctattttttc
      721 caaaaaaagc atagaaaaag aattaaaaaa ttcaacactt tatgaaatta aattaaaaaa
      781 tatcgaccta aagcgtaaat tttatacctt aaaaagaaaa aattataatt ttaacagagc
      841 tttagaaaaa tttgaaaaaa tattcaaatc ataaacataa taaccgattt atatagaaag
      901 ttaagcaatt tttagataaa atccaaagct tatataaatt tcaaggataa tcaatgaacg
      961 ccaaaactca agaagctgaa ttagaagaat tatttcaaga aaatgcaaaa gattatatca
     1021 catatgaaaa attggtaaaa tatcttacaa aacaaccaag tgcatcaacc actaaaaaag
     1081 tgcaagcatt aatgaaaaaa cacaaagtgc aacttttttc agcagctgaa attgcacaaa
     1141 tgaaaaacat agaagatgca aaaagacttc aagaagaaaa acaaaaactc caagatacaa
     1201 gccttgagaa cgaatttgat ttagccaatg aaaacgattt attagaatgg agcagatcag
     1261 actctcctgt tcgtatgtat ttaagagaaa tgggacaaat tgctttatta aacaaagatg
     1321 aagaaattga aatttccaaa aaaatagaac ttggcgaaga tattatcatt gatgcttttt
     1381 gttctgtacc ttatttgata gattttattt tagattataa agaaccttta ataaacagag
     1441 aaagaagggt aaaagaacta tttaaaagct ttgacgatga agaaaaaagt gatgataaac
     1501 ttgatgaact tgatatagat gaagatgaag aaaacgaaac agaattagaa tcagatgaag
     1561 aaaatactaa aaaaaacagc aaaaaagaag atgaaagaac tttaaaagtt atagaaaaat
     1621 ttaaagctct agaaaaagct aaaaaagatt ggctaaaaac atccaaagac aaagaaagcg
     1681 gagatgaact tttagataaa ttaagcattg cgttcaaaaa aaatatttta aaagaaaaat
     1741 taatggatct aggccctact tcaaaactta ttagcgaaat cgtaaaatca atggaaactg
     1801 cactaaaaag tgatgaagaa tttgacaaag aacttaagcg tttagaatac cgcttaccta
     1861 tgttttctga tgaacttaaa aaacgccatg cagatatttt aaaagatatt acaaaattga
     1921 gcaaagaaga aatcacagag cgagctttag aaacaaccat ggtaagcact tatatggaaa
     1981 ttaaaaaact atttcaaact aaagaagcca gtgaaaaaag ctttgatctt gaaaaatcac
     2041 gcttaaaaga aattttggag caaattaaac gcggtaaaaa aatctctgat gaagcaaaag
     2101 gaagaatggc aaaatcaaac ttgcgccttg ttgtaagcat agctaaacgc tacacaaatc
     2161 gtggtctgcc tttcttagac cttatccaag aaggaaatat aggtttgatg aaagctgtgg
     2221 ataaatttga atacaaaagg ggttataaat tttccactta tgcaacttgg tggatcaggc
     2281 aagctatttc aagggctata gctgatcaag caagaaccat aagaattcca atccatatga
     2341 tagaaaccat caatcaaatt aataaaatta tccgcgaaca tctacaaaaa gatggaaaag
     2401 aacctgatgt cagtgttata gctaaagaag taggtttaag cgtagataag gttaaacaag
     2461 ttattaaaat cacaaaagaa ccaatttctc ttgaagctcc aataggaaat gaagatgatg
     2521 gtaaatttgg agattttgtt gaagatagaa attcactttc tccaatggat catatcttaa
     2581 aggatgattt aaaagaacaa attgatgaag ttttagatca attaaacgat agagaaaaag
     2641 cggtaattcg tatgcgtttt ggtttaatgg atgatgaaag tgatagaact ttagaggaaa
     2701 ttggaaagga acttaatgtc actcgagaaa gagtgagaca aatagaaagc tcagctataa
     2761 aaaaactcaa acaccctaaa gtaggaagaa aactaaaaaa ttatatagaa ggttggaagt
     2821 aagagtcaat ctccttacta aaaacccaga tctttttctt cttttaactt gcgtacatgt
     2881 tcaaaaaaaa ctaattttcc gctatgtttt tttaaatttt taaattcctt aatatcaaat
     2941 tctaaacaca agatagaaga agttggaaaa gaagctaaac atagcgaact taacaactct
     3001 ccaagctcca ttaaactagg attatgaccc actaaaaata cttcattaaa ctcatcatca
     3061 atatcttgca gaatttttag caaattttca acattgcaaa gatacaatct ttcatcaaaa
     3121 caaattctat ttttatcaaa attataaaat ttggctattt ttttcgctgt tttagcggtt
     3181 ctaacagcag gacttgatag caccaaatca ggatgaattt catgcgaagc aagattttta
     3241 aaaagttttt ttaaatcttc ctttccactc ttagtaagtt ttctttcaaa atcatcgatg
     3301 tcttcactct tacttgcttt tgcatgtctt ataatataaa tttttttcat tttacctctt
     3361 ttattttagc taaaatataa ccacacataa acccgaaaat atgaccatac caagcaacat
     3421 ttacccccat aagcaatggc acaaaactca taagtaaaat tgccactata agtccttttg
     3481 tgctattttt atcaataaca gcataaaagc ccattaaaac acaaattgca ccactagcgc
     3541 ctatgacatt tatattttct ccaaaatatt taaaatcaaa atacacataa aaaacactta
     3601 aaagtgagca caacaatccg ccaataaaat aaataaaaat aaaacacaaa gcacccaaat
     3661 aagtttctaa catacgccca aattgaaaca aaactatcat atttaatata agatgagtta
     3721 aatttccatg taaaaacatt gaacttaaaa gctgccaata agctccatta aaaaataaaa
     3781 tattcaaacc aaggatattg taataatcat aagaaatc
//
LOCUS       DAPIWV010000132         3684 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.134, whole genome shotgun sequence.
ACCESSION   DAPIWV010000132 DAPIWV010000000
VERSION     DAPIWV010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3684
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.134"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..276
                     /locus_tag="RJ272_001621"
     CDS             <1..276
                     /locus_tag="RJ272_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDV7382673.1"
                     /translation="IYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLV
                     EKNIKNLWLQLGISNETAKKECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            276..1487
                     /locus_tag="RJ272_001622"
     CDS             276..1487
                     /locus_tag="RJ272_001622"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HDV7382674.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLIL
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATLLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1484..2209)
                     /gene="truA"
                     /locus_tag="RJ272_001623"
     CDS             complement(1484..2209)
                     /gene="truA"
                     /locus_tag="RJ272_001623"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDV7382675.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2206..3231)
                     /locus_tag="RJ272_001624"
     CDS             complement(2206..3231)
                     /locus_tag="RJ272_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7382676.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDGDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3231..>3684)
                     /locus_tag="RJ272_001625"
     CDS             complement(3231..>3684)
                     /locus_tag="RJ272_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7382677.1"
                     /translation="LSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSG
                     GFLLNAFSFGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFL
                     VLFIASILTLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
BASE COUNT         1456 a          599 c          511 g         1118 t
ORIGIN      
        1 atttatccta aagaagagtt tattttaaat gaaaaagttt atagaaattt agatcaaata
       61 gaagaaaaaa tcgatacact tatacttttt agaaaaggcg aagtggcact agaaattctt
      121 cctaagcttg ttgaaaaaaa tattaaaaac ctatggcttc aacttggtat tagcaatgaa
      181 acagccaaaa aagaatgtaa aaaattagat ataaatttta tacaaaatcg ttgcattatg
      241 ctagaatatc cgtattttaa aacaaaggaa aaatagtgtt agagcttaat aaaatttaca
      301 aagcaaaaca acaaatttca ggatttgtaa acaaaactcc tttcatatac tcttcttttt
      361 taagtgatat ttgtcaaagt gagatttatc ttaaaaatga aaatttacaa attacaggtg
      421 cttataaaat tcgtggagct tataataaaa tagccaatct tagcgctgaa caaaaacaac
      481 acggagtcat tgcggcaagt gcaggaaacc atgctcaagg cgtggccatt agtgcaaaaa
      541 aatttggcat taaagcagtt attgtaatgc cagaatccac tccgctctta aaagtttctg
      601 ctacaaaagc cttaggagca gaggtgatac tcaaagggga caattttgat gaagcttatg
      661 tctttgcaac ctcttatgct aaagaaaata atcttagttt tatccatcct tttgaagatg
      721 aatttgtaat ggcaggacaa ggaactttga tacttgaaat gcttgatgaa ataagcgatc
      781 ttgatatgat tatcgcacct gttggaggtg gaggacttat aagtggtatc gcaagtgcag
      841 ctaaacaaat caatccaaac attaaaatca tcggagttgg agccaaagga gctcctgcaa
      901 tgtatgaaag ttttcatgcc aaaaaaatca aaaatgcaaa aagcgtacgc actatagccg
      961 atggtattgc tgtgcgtgat gcaaatccta ttaattttaa tattatttta gaatgcgtag
     1021 atgattttat ccaagttgat gatgaagaaa tcgctaatgc ggtattgttt ttacttgaaa
     1081 aacataaaat catagttgaa ggcgcaggag ctgcgagtgt agccacccta cttcatcaaa
     1141 aaataaatac acaaaatcat aaaaaaattg gcgtagtttt aagcggaggc aatatcgatg
     1201 cacaaatgct aaatatcatc atagaaaaag gtttatttaa atcttacaga aaaatgcaaa
     1261 ttcatgttac tttagtagat aaacctgggg cattattaca ccttacagac agcttaaaaa
     1321 tagccaatgc aaatatagta aaaatcgact atgatagatt ttctaccaag cttgattatg
     1381 gcgatgcgat gatttcaatt accctagaaa ccaaaggtaa agaacaccaa gaagaaataa
     1441 gaaaaatttt aacccaaaag gcttttaatt tctatgaaag tttttaataa catatacggc
     1501 ttaaataaag cccatttggc ggtgctaaaa agtgattgta ttgcttttta gcctcaatct
     1561 gttctttgag ttctttttca ctcatttttc cttctaaaac ttttaaaacg cttgctacgc
     1621 ttaatctaat ttgccctctt aaaaaaccat tagctttaaa atgaaaaatg ctaaaatctt
     1681 tataagcata agctctagca ataaaaattt ctcttaaagt cgttttatta tcccctccac
     1741 ttttgcaaaa aaactttaaa tccttttttc ctacaaaaaa acccaaaagc tcattagctt
     1801 tacctaggtc aaatttagga taaaaatgta cataagaagc cataaaagga ctataagaag
     1861 cgtgagaaaa tatatagcgg tattctctac tttttacatc aaatcttact tcaaaatcat
     1921 cttttacttt ttcaattttt ttgatatgga taaaaggatg ggaaaattta ttaagttgtt
     1981 tttgaagata ttctaaattt gtaaaataat ctccacactc cacactagct acagcatagc
     2041 ttgcatgtac tcctttatct gtacgagaag ccattaaaag aggtgaaaaa atacccaaat
     2101 gcgataaggc cccacttaaa gcatcttgaa cacctttttt atgaggctga gtagcagaac
     2161 ctaaaaaagc agagccatca taagaaaata taatttttat tttcatcaat atcgactcaa
     2221 aatcattttc ttaaaacaat aagccgaaac aaataaactt aaagaaaaaa ttccaagaca
     2281 agccaaaatt ggaggttgag aaaaagaact taaaagtcca aaatatatag caatcactcc
     2341 aaacatacct aaatacacat agcctttttc ataacgataa gtaaccaaac caaaacaaag
     2401 cgcaaaaagc gtactagcaa gtggaaacaa ggctatagtt gtataaatca caaattctct
     2461 tgctctttgt ggattttcgt ttaaatcatt ccagtattca taaaatttct ttgtttgaag
     2521 attgtctgta ttaaactgag tatttactac taaagtgtca aattctccac taaaaatact
     2581 ttgaccttgc tcaaaattat acattttgcc ttgatttaag ctaaaagcaa agctatcatc
     2641 ttttctttgc acatgcgctt ctttggctat gataagttgt tctttatcat ctgctttatg
     2701 tttagggcga tacataatta tgttttcata cttatcacca tcttgttttt ctataaaaat
     2761 catccagtct aaaaattttt gtccaaattc tcctgttttg tagttaaatt tcacttgagt
     2821 gcttttatag tttacaaagt tatcctgaag ttcaaatact ataggtatca ttaccaaagc
     2881 cacaacaagc ataaaagcac taatcaagct tgcaatttta aggaaaaatt ttgccaaaat
     2941 cattggtgaa aatcccaaag taaaaagcac tatgctttca ttttccttag aaagcctaaa
     3001 caaagccaaa gttaaagaaa taaaaaaaga tataggcaag gtaaaaatta aaattctagg
     3061 caacataaac ccataaagct ttaaaagatc caaaaaacta atctctatac ttgaagtaag
     3121 ttttgcaagt tgaataaaaa acaccataga tacaatagca aaaagtacga aaaatataga
     3181 caaattcgta cttaaaaatt gatttaaaac atatcttaaa ctaagcttca ttagaataat
     3241 cctaagtttt tataaaataa aactgccaca aaagcgatat ttaaaaaggg tatcatagca
     3301 agttcttgct cttttattgc tttaattcta aaaaaaataa aaaaaggcaa agtcaaaata
     3361 gaagctataa ataatactaa aaatccatac tcaaaaccta aaattccacc tatacaagac
     3421 ataataataa tatcagcatc acccaaattt tctaaaattt catctttttt ttggaaattc
     3481 attagaaaaa aaaccaaact ttttaataaa aaaacaaatc ctccaaaact aaaagcattt
     3541 agtaaaaaac ctccactaaa ctctttaaaa atcaaaaaat gtaaaatttc actctcccta
     3601 aaggcgtaaa aaaaagcaaa taaaaaagca ctccaaagta aaatttgtgg tacggctttg
     3661 agtttaatat caattaaaga aagt
//
LOCUS       DAPIWV010000133         3602 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.135, whole genome shotgun sequence.
ACCESSION   DAPIWV010000133 DAPIWV010000000
VERSION     DAPIWV010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.135"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(140..667)
                     /gene="tpx"
                     /locus_tag="RJ272_001626"
     CDS             complement(140..667)
                     /gene="tpx"
                     /locus_tag="RJ272_001626"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDV7382678.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(766..1506)
                     /gene="peb2"
                     /locus_tag="RJ272_001627"
     CDS             complement(766..1506)
                     /gene="peb2"
                     /locus_tag="RJ272_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HDV7382679.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTSAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKALEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(1547..3577)
                     /locus_tag="RJ272_001628"
     CDS             complement(1547..3577)
                     /locus_tag="RJ272_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HDV7382680.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELARETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT         1194 a          673 c          401 g         1334 t
ORIGIN      
        1 ttttattgtc ctttttatat tattcttaca caaaataaat attaaaaata atcaacttaa
       61 caattaaaat ataatcaact taaaataata aaaaaatgaa gatataaaaa ttaagcccta
      121 agaatgggct taatcaaaat taatggcaac cacaaccacc gcagcagcta gaaccaccaa
      181 aaaatgcatc aagttttgca atatctggca tttctgtgat ttcatttaca agttctttat
      241 atgccacttt accctcttta atcacaaata cggcacgagc taaaagccct tctaaagcac
      301 cttcatttat caaaacacca tatttttcac caaattcttt tgccacaaaa tcacttgcaa
      361 cacttaaatt ttcaatacct tctgtactgc aaaatcttcc catagcaaaa ggtaagtcca
      421 tacttactac aatcacttca gcaccattgt aactggctac ttttttatta aattctctag
      481 cctctgtagc acaaactggt gtatctaagc ttggaacact taaaatgatt tgagttttac
      541 ccgctgcacc gatttcaatc acgcttaaat ctttagcttt aagatttacc ttaggagcat
      601 ctgctccaac ttctactgaa tttcctttaa gttttacagg atttccttta aaatttactg
      661 tactcattta atttcctttt ttgatatttt aaacattatt gcaattaatg ttttaggagt
      721 gattatatcc tataaatatt aattattttt taatttcact caaaattatt ttacttcttt
      781 ccaagtatat tttttccaca ctttttgagc ttccttactc ttaataaaat ctacaaattc
      841 taaagctttt ttattttcta aagctttttt tgtaggagca atttcagctg cacgataaat
      901 cactgcattt ttatctttga taaataaagc tttatcatcg cctaaagcct ttgcccaatg
      961 agaccaaatg attaaagcat caatatttgg attgttattc cactcatcta cagcagcttt
     1021 ggaattttta gcataaattt ttatattttt acgtaatttt accaaatttt ctctttttgc
     1081 actttttaaa gccatatctt cataaagtcc aacttgtcct gcaccatcaa ccaccataac
     1141 atttatacca tcttttaaaa tgtcttcaaa atttttaata ttttttggat tatttggacg
     1201 cacgataata cctgatggac gcacatttaa aacgcttaaa ttttccaaac ttaaacttgg
     1261 aattttttta gcaaaatcat ccatcattga agtattgcct gaaaaaatca aatctgcatt
     1321 ttcttttgct ttatctatcc aagctgaagt tgggcctgcg gttacaatca ccttttcttt
     1381 tgttttttct tcaaatttta aagcaagctc ttttagcaca ggagcaggac cacctggacc
     1441 ataaactaaa atttcagcat ttaaaaaact tgctgctgct aaacttaaaa ttaatatttt
     1501 tttcataaaa taaacctttc tttataataa tataaaggaa attttatcaa tctatagtta
     1561 actctccctt gcaaagccct gcttctataa gaaaacgaga aggagcaaaa gaagtttttt
     1621 tgtttttatc atatttagca tagcttaaat aaagtatatt ttttgcccta gttactgcaa
     1681 cataaaaaag ccttctttct tcttctaagc ttccacccat tcccataagc ttttgattag
     1741 gaaagcgacc ttgcgcaaga tcaatcacaa aaacaagatc aaattccaag cccttacttg
     1801 catgtacgct aagcaaatta actcctttgc cactactcat ttcacttgca cctaaagtta
     1861 gaaaattata atatttataa atatcgctat aattttttgt aagctctttt aagacattaa
     1921 attttgtttc tattttttct aaattttcac tctttcttaa taaatccacc tgccctgctt
     1981 tatttgtcgc tcttttagtt gcaagttctt cgcaaatttc tctataaaaa gaattttcgc
     2041 aaattaaatt gactaaagtc aaagaatgtt ttatttccat agcttttttt aaaaaaagat
     2101 agattttttc caaatttcta gcgcacaaat cattgatttt tgaaagtctt aaaataggat
     2161 gtgcatcaaa ttcactctca aatttaaaac gagtttctct agctaattct tctaaatctg
     2221 caaaaagccc aagttgataa tttctttttt gatgattttg caaatttaca tttttatcag
     2281 gatctaaaaa accttttatt aaatttccat gccctaattt taaaagtgcg tcaaaaattt
     2341 cttttgctaa aactccaccc acacctttgg tatattgaac caaatgaata aaagccatga
     2401 tatctttagg atttaccaca agcgcaagca tggagctaaa agctttaact tccaaacttt
     2461 caaaaaaact tccacttccc tttctcacac ttgcaatgcc ctgctccctt aaagctactt
     2521 caaccccatc agcacttgag ttgttgcgaa aaatcacggc aatttcttcc aaacttactc
     2581 cgcttgtaag tatcattttg gctatatttt gatactgatc aaataattct tcaaaagtaa
     2641 gcaaagatgg ggctttaaac tcatcatttc ttgtaacaat aagttctttt ggatataatc
     2701 tttcgttatt taaaatcact ttattagcca aagctaaaat acttcttgat gaacggtagt
     2761 ttttatttaa agaaaaaatt tttgcatctt taaaacgatc tttaaaccca cctatgatat
     2821 taatatccgc tccattaaaa gcataaatac tttgatcata atcccctacg caaaacaaac
     2881 ttttactatg aaaagcctct attaaagaac tttgcaaagt atttgtgtct tgatattcat
     2941 ctactaaaat ttcatcaaat tcatattttt cttcttttaa aagatctttt agattgataa
     3001 gcaagtcatt aaaatccaca taattaaaac gctttttttc attatcatat tcttttaaaa
     3061 tatcttcata aatttcagca taaatacttt gatcttcata gttttgacaa aaccaagtat
     3121 aaaaatcttg attgtgtgct ttgttttgaa acaaagaata aagatcgtat aaataacttg
     3181 attgataagg ttttatatca cttaaatgcc taaaagttct tttttcatag acacttttaa
     3241 gtagagtttt taactcgctt gcttgcttta aggctatatt tttatccgca tttctaagta
     3301 aggtataagc cgtactatga aaagttcctg caagtatttt actggtaata tttttatcaa
     3361 aaaatttccc taaacgccct atcatttctt tgctggcttt atttgtgaaa gtcaaaagca
     3421 tgattttttg aggtgccact cccttgctta aaagataaga aattcttgca acaatagtag
     3481 aagtttttcc cgtgcctgca cttgcaataa caagattgtg tccaaaatca gcagtagcgg
     3541 caagatattg ttcattattt aattttgaaa gtggcattat tttccttata aaagttaaaa
     3601 tt
//
LOCUS       DAPIWV010000134         3559 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.136, whole genome shotgun sequence.
ACCESSION   DAPIWV010000134 DAPIWV010000000
VERSION     DAPIWV010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.136"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            231..836
                     /locus_tag="RJ272_001629"
     CDS             231..836
                     /locus_tag="RJ272_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HDV7382681.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            836..1852
                     /gene="mnmA"
                     /locus_tag="RJ272_001630"
     CDS             836..1852
                     /gene="mnmA"
                     /locus_tag="RJ272_001630"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDV7382682.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(1880..2125)
                     /locus_tag="RJ272_001631"
     CDS             complement(1880..2125)
                     /locus_tag="RJ272_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7382683.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSIGFVISIVDIVVMIAVGLFWWKILGFY"
     gene            complement(2248..2487)
                     /locus_tag="RJ272_001632"
     CDS             complement(2248..2487)
                     /locus_tag="RJ272_001632"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7382684.1"
                     /translation="MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLFGKLGVTQFLAEA"
     gene            complement(2426..2650)
                     /locus_tag="RJ272_001633"
     CDS             complement(2426..2650)
                     /locus_tag="RJ272_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7382685.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIILSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(2704..3102)
                     /locus_tag="RJ272_001634"
     CDS             complement(2704..3102)
                     /locus_tag="RJ272_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7382686.1"
                     /translation="MKDALSGFSNSLIWFIVISIIVARGVIKTGLGEHLAYHFISILG
                     KKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTY
                     LSLVNYQEPILFHQLCLLQLQLQILWWLIL"
     gene            complement(3263..3398)
                     /locus_tag="RJ272_001635"
                     /pseudo
     CDS             complement(3263..3398)
                     /locus_tag="RJ272_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
BASE COUNT         1352 a          559 c          578 g         1070 t
ORIGIN      
        1 aagaattaga acttcttttt ggtatgaaat ttagtgatga tgatgcagga gaatttaata
       61 aaatcctttc tttaaattct acaccaaaaa gtatagatat taaagcttaa ggatttaaaa
      121 gtctttaaat tcctaatctt aataaaataa acctattaaa acttatataa taaagaactt
      181 attataaatt tttagctaga atggaattta ttttaactaa aggttgaaaa atgaatgaaa
      241 aaataagcca agatttagaa aaatttgcta acataccaaa cctaaaaaat gccgtaactt
      301 tttttggttc agcaagactt aaagaagata atttttatta tcagcaggct aaaattttgg
      361 cacaaaaatg tgctcaaaat ggtttttgtg tgataagtgg tggaggtggt ggtattatgc
      421 gtgcagccaa cgaaggtgct ttttcacaaa aaaataatac aaattcaatg agttctgtag
      481 ggtttaatat atttttacct cacgagcaaa aacttaatga ttttgtagaa tataatatta
      541 cttttgagag cttagccata cgcaaaatgg ctcttattga aaagagtcta gcttttgtga
      601 tcttcccagg cggctttgga acacttgatg aattgtgtga aattcttaca ttaaaacaat
      661 tagaatttaa aaaagatgtt cctattattt tgtttgggag tgaattttgg cgaggttttg
      721 atgagttcgt cagaaattct ttactcaaac ttgaagtgat ttctaaagga gatgagttaa
      781 agtataaaat cactgacgac ttggatttta taattaatac tttaaaggaa atttaatgaa
      841 aattctagtc gctatgagcg gtggagttga tagtacagtc actgcttata aacttaaaaa
      901 tttaggtcat gaagttatag gttgttatat gaaacttcat ggcaaaccaa attatcacga
      961 agaaaatatc aaaaaagtag aaaaagttgc aaactttttg caaattcctt atcatatttt
     1021 agacttacaa gaagatttta aaaacaaagt ttacatgcct tttgtggata cttataaaga
     1081 gggtaaaaca ccaaatcctt gcgctttatg taaccgtttt atcaaacttg gaaaactttt
     1141 agaatttgct aaaagtttag gttgtgaaaa acttgccaca gggcattatg caagacttga
     1201 aaacaactta ataaaaaccg cagtagatga aagcaaggat caaagctatt ttttggccag
     1261 tgcagataaa gaagctttaa aatatcttat ttttccgcta ggcgaaatga aaaaagaaga
     1321 tgtgaaaaaa tttgcttcca ctatagaggt tttaaaatct tttgccaccc aaaaggaaag
     1381 ttctgaaatt tgctttgttg aagatactta tgtgcaagtt ttagatcagt ttatggatac
     1441 aaaaattcct ggagaagtat tagatagtag cggaaaagta gtaggcaaac atgagggcta
     1501 tatgcactat accataggca aaagaagagg ctttgaagtg cgtggagcgc atgagccgca
     1561 ttttgtttta aaaatcaatc ctaagcaaaa ccaaatcatc gtaggaacca aagaagaact
     1621 taaaatcagt gaatttaacc taaaaaatat caatcttttt atagacgcta aagagcttga
     1681 ttgcgaagta aaaatccgct atcgttcaaa atccacacct tgcaaggtag aaatttatga
     1741 agataaaagt gcaaaaatca tcctaaaaga tcctgtttat gggcttgcta gcggacaaat
     1801 ggcagtcttt tatgatcatg ataaagtcat agcaagtggt tttatagaat aatttctagg
     1861 aattaattcc tagaaattat taataaaatc ctaaaatttt ccaccaaaaa agcccaacag
     1921 ctatcatcac cactatatca actatggaaa tcacaaaacc tatactccac cattttttaa
     1981 gagttacaca gcctgttcca aaaataacag gagctgttcc tattgcatag tgagttaatg
     2041 ccatcataac attacctgaa gctatcataa taaaagcata aaaaagtggt ggtgctccta
     2101 aggcaagctg cactataaaa aacaaaaaac attgctgata tatgagctgt aatggaagca
     2161 aagaaatagt gtgtatataa aaaaagcaag gcttaaaaat atcataatag aaatttcccc
     2221 aagtcccata gcagaagcaa attcacctta agcttcagct aaaaactgtg taacgccaag
     2281 tttgccaaat aaagttgcca tcattacaag agctgaaaac catactaaag tattccaagc
     2341 agctttttca gccaaaactt ccccaaaagt taaaactcca ctaatcaaca ccaaagacaa
     2401 cccaagcaaa gccacactag tcgcatcaag agaaattcca aaaaaacaag cccaaagctc
     2461 cagcccataa aagtaaaagc gagacaaaaa cactgagtat gattttttca ctatttttca
     2521 tttttacaag ttcttttaat ttatctttag caaaagtaga agcattaggc gtggatttaa
     2581 tttctagcgg agagagaaaa taaagcatca aaggcatcaa aagcatagca gctataccag
     2641 gtaaaaacat ccctaaagcc tattaccccc aagttaaata cacttctaaa tttgtagctt
     2701 gtgctataag atcaaccacc aaaggatttg gagctgtagc tgtaataaac atagctgatg
     2761 aaataggatt ggctcttgat aatttaccaa agaaagataa gtgcctattt tattttgtgt
     2821 tccatcttca ggagtggatt taaaacttct tgcaataact tgaactatag gatttatgat
     2881 agcccctgct cttgcagtat ttgaaggagt aactggagct aaaatagttt cacaaaaagc
     2941 tatagaataa gcaataccta aggttttttt accaagaata ctgataaaat gataagccaa
     3001 atgctctcca agtcctgttt taataactcc acgagccaca ataatagaaa tcactataaa
     3061 ccaaataaga gaatttgaaa aaccacttaa agcatctttt atgcccgttt tagattttaa
     3121 atttgatata gcagtattta ccttttcatc ttatgctctt ttgatataaa aaatcaagtg
     3181 ctgaagtatt taaaggaaat tttagtctca tcaataagtt gttgcgtaga agttttcgaa
     3241 gtagctttgg tgtaaatttt acttagattt tcaattgggt agtggtaata cccactaaga
     3301 gctactatgg caatagctat aaaaggcatt acttgtaaaa tcactgccat aatcacagca
     3361 ataaaaagcc caagaaaatg ccaagaatta tcttccaaac ctacaggagt aggtacaagc
     3421 caaaacacag ctgcaattaa aatacacagc accaacaagg gaattttctt tctatccatt
     3481 gtttatcctt tgatattggt aatgtaattt acaatgctta aattctagtt aactaatatt
     3541 ttaataaatc ttaaaatta
//
LOCUS       DAPIWV010000135         3290 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.137, whole genome shotgun sequence.
ACCESSION   DAPIWV010000135 DAPIWV010000000
VERSION     DAPIWV010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.137"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            176..1207
                     /gene="pseI"
                     /locus_tag="RJ272_001636"
     CDS             176..1207
                     /gene="pseI"
                     /locus_tag="RJ272_001636"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HDV7382687.1"
                     /translation="MQIGNFNTDEKVFIIAELSANHAGSLEMALKSIKAAKEAGADAI
                     KIQTYTPDSLTLDCDKDDFIIKGGLWDKRKFYELYESAKTPYEWHSQIFEAAQDAGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRMIAKENKPTIVSTGIANEEELF
                     KICEIFKEEKNPNLIFLKCTSAYPAQISDMNLKGIASLKEKFGVEVGLSDHSFGHLAP
                     VMAVALGARVIEKHFMLDKNIKSEDSEFSLDFDEFKAMVEAVREAESALGDGSLALDE
                     KGLKNRVFARSLYASKDIKKDEIFSEENVKSVRPSFGLHPKFYKELIGKTATKDIEFG
                     TALKQGDFQ"
     gene            1204..2172
                     /gene="legB"
                     /locus_tag="RJ272_001637"
     CDS             1204..2172
                     /gene="legB"
                     /locus_tag="RJ272_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038816896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HDV7382688.1"
                     /translation="MKTLVTGADGFIGSHLCESLVQKGYKVRALSQYNSFNFWGHLEK
                     SPYLKDMEVVSGDLRDSFFCEKITQGMDAIFHLGALIAIPYSYEAPQSYVDTNVKGTL
                     NMLEAAKKNEISHFIHTSTSEVYGTARYVPIDEKHPLQPQSPYSASKIAADMMALSYY
                     NAFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGTKELKLGNLSPTRDLNFVLDTC
                     EGFISLLKLNHFGEVYNIGSGTEYSMQEVLDLIQKILNQNVKIIQDEKRLRPKNSEVF
                     RLKCDSSKLQNATHWQSKISLEEGLKLSIEYFKENLASYKSEVYNV"
     gene            2165..>3290
                     /locus_tag="RJ272_001638"
     CDS             2165..>3290
                     /locus_tag="RJ272_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LegC family aminotransferase"
                     /protein_id="HDV7382689.1"
                     /translation="MFENEIAFIKKLFNKEKIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVARFEEALKQRTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGARAIFLDIDENTLSLGPKALQNFLENHSYQKDGFTYNKITHKRIKACVVMHT
                     FGLSADIEKLCEICKNYNIFLIEDAAEALGSTYKNKALGTFGKCGILSFNGNKIITGG
                     SGGAILCDDENLANLTKHLSTTAKIPHPYEYDHDIIGYNYRLCNINAAILLAGLEKLD
                     FFLENKRELAQIYKEFFTNHKACKFIDERKNSKSNFWLNALCFKDGNLRNTFLQECLE
                     NNIFVRPVWKSLPSLKPFQTWQKDELLNTQKLEKCLVNLPS"
BASE COUNT         1202 a          492 c          599 g          997 t
ORIGIN      
        1 aatcttaaaa ttaaaaattt ttcaagaaaa cttgcaggtt atcaatttgc acaaaaattt
       61 ggttttggcg ttaccaaaga aacaatcaaa catgataaaa aaatttttat catgcaatta
      121 gtttttttaa aaaaagtcga tataatgcaa aataagaacc ataaaaggca aaatcatgca
      181 aataggaaat tttaataccg atgaaaaagt ttttatcata gcagagctgt ccgcaaatca
      241 cgcaggaagt cttgaaatgg cacttaaaag cataaaagca gctaaagaag caggagcaga
      301 tgcgataaaa attcaaacct acactccaga tagtctcacg ctagattgcg ataaagatga
      361 ttttatcatc aaagggggac tttgggataa gcgcaaattt tatgagcttt atgaaagcgc
      421 taaaactcct tatgagtggc attctcaaat ttttgaagcc gcacaggatg cgggtatact
      481 ttgtttttca agtccttttg cgaaagagga tgtagagttt ttaaaacgct ttgatcccat
      541 cgcctataaa atcgcctctt ttgaagcaaa tgatgaaaat ttcgtgcgta tgatcgccaa
      601 agaaaacaag cctaccatcg tttcaactgg tattgcaaac gaagaagagc tttttaaaat
      661 atgtgaaatt ttcaaagagg aaaaaaatcc taatctgatc tttttaaaat gcacttcagc
      721 ttacccagca caaatttctg atatgaattt aaaaggtatt gcaagtttaa aagaaaaatt
      781 tggcgttgaa gtaggactta gtgatcatag ctttggacac ttagctcctg ttatggctgt
      841 tgcgcttggg gctagagtga tagaaaaaca ttttatgctt gataaaaata taaaaagcga
      901 agatagtgaa tttagtcttg attttgatga atttaaagcc atggtggaag cagtaagaga
      961 ggctgaaagt gctttgggtg atggctcctt agccttagat gaaaaaggtc ttaaaaaccg
     1021 cgtttttgct agaagtttat atgcaagcaa agacatcaaa aaagatgaaa tttttagcga
     1081 agaaaatgta aaatcagtgc gtccttcttt tggtcttcat cctaaatttt acaaagaact
     1141 tataggaaaa actgctacta aagatataga atttggcaca gctttaaaac aaggagattt
     1201 tcaatgaaaa ccctagtaac aggtgcagat ggttttatag gctctcatct ttgtgagagt
     1261 ttggttcaaa aaggctataa agtaagagct ttaagtcaat ataattcttt taacttttgg
     1321 ggacatttgg aaaaaagtcc ttatttaaag gatatggaag ttgtaagtgg ggatttaaga
     1381 gatagctttt tttgtgaaaa aatcacccaa ggaatggacg ctatttttca tcttggagct
     1441 ttaattgcca ttccttattc ttacgaggca ccgcaaagtt atgtagatac taatgtaaaa
     1501 ggtactttaa atatgctaga agctgcgaag aaaaatgaaa tttctcattt tatacacact
     1561 tctacaagcg aagtttatgg cactgcaaga tatgtgccta ttgatgaaaa gcaccctttg
     1621 caacctcaaa gcccctattc tgctagtaaa atcgcagcgg atatgatggc gcttagttat
     1681 tataatgctt ttaatttaaa tgtaaatatt gctcgccctt tcaataccta tggaccaaga
     1741 caaagcgcaa gagccattat acccactatc ataacacaaa ttttaagtgg gacaaaagaa
     1801 ttaaaacttg ggaatttaag tccgacaagg gatttaaact ttgtccttga tacttgcgaa
     1861 ggctttatct cgcttttgaa attaaatcat tttggagaag tgtataacat aggctctggg
     1921 actgaatact cgatgcaaga agtgcttgat cttatacaaa aaattctaaa tcaaaatgta
     1981 aaaatcatcc aagatgaaaa aagattgcgc ccaaaaaata gtgaggtttt tagactaaaa
     2041 tgcgattcaa gcaaacttca aaatgcaacc cattggcaaa gcaaaataag tcttgaagaa
     2101 ggcttgaaac taagcataga atattttaaa gaaaatttag caagttataa aagtgaagtt
     2161 tacaatgttt gaaaatgaaa ttgcttttat taaaaaactt ttcaataaag aaaaaatcgc
     2221 cttgcacgaa ccttgcttta tcggaaatga aaaaaaatat ctcttagaat gcattgatag
     2281 cggttttgtt tcaagcgtag gtgagtttgt agcgcgtttt gaagaagctt taaaacaaag
     2341 aacaaaagct cgatttgtta tcgctacaaa tacaggcacc gccgcacttc atatcgcttt
     2401 acttgcaaat ggtattgatg aaaattgtga ggtgattacc caaagtatta gctttgttgc
     2461 aacggcaaat gctattgctt acacaggagc tagggctatt tttttagata ttgatgaaaa
     2521 tactttaagt ttaggcccta aagctttaca aaatttttta gaaaatcaca gctatcaaaa
     2581 agatggcttt acttacaata aaatcacaca taagcgcatc aaagcttgtg ttgtaatgca
     2641 cacttttggc cttagtgctg acatagaaaa gctttgcgaa atttgtaaaa attataatat
     2701 ttttttaatc gaagatgccg ccgaagcttt aggaagcact tataaaaaca aagctttagg
     2761 tacttttgga aaatgtggaa ttttaagttt taatggaaac aaaatcatca caggtggaag
     2821 tggcggagcg attttatgcg atgatgaaaa tttggcaaat cttacaaagc atttaagtac
     2881 tactgctaaa atacctcatc cttatgaata cgatcatgat atcataggct ataattatag
     2941 actgtgcaat ataaatgccg caattttact tgcgggactt gaaaagctag atttcttcct
     3001 agaaaacaaa agagaattgg cacaaattta taaggaattt tttacaaatc ataaagcttg
     3061 taaatttata gatgaaagaa aaaattcaaa aagcaatttt tggctcaacg ctttatgttt
     3121 taaagatgga aatttaagaa atacattttt acaagaatgt ttagaaaaca atatttttgt
     3181 gcgtcctgta tggaaaagct tacctagcct taaacctttt caaacttggc aaaaagatga
     3241 gcttttaaat actcaaaaat tagaaaaatg tttggtaaat ttacctagca
//
LOCUS       DAPIWV010000136         3181 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.138, whole genome shotgun sequence.
ACCESSION   DAPIWV010000136 DAPIWV010000000
VERSION     DAPIWV010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3181
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.138"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..2336
                     /locus_tag="RJ272_001639"
     CDS             <1..2336
                     /locus_tag="RJ272_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HDV7382690.1"
                     /translation="LNAFAFELVLNTGRENNQAFAVLHASNDLEFTCQKFITEAKVHF
                     ECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTSQNIYIDKELSS
                     SSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNSDPVVIPQSADI
                     NTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQNKLYTQDPSMRD
                     QQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYTMSILDNEQPNN
                     YFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSLAKNLLSNEQVN
                     KAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDAFAKMSKLDPSY
                     EETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEVFFALGDNNASF
                     LHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLIESKKIPNATQF
                     LEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACLIRTSNVEQALD
                     YIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDDENFKAYYLQFL
                     SLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTILTYAPKAIDYQ
                     NFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRARALYIQALTYE
                     RMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(2379..>3181)
                     /locus_tag="RJ272_001640"
     CDS             complement(2379..>3181)
                     /locus_tag="RJ272_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7382691.1"
                     /translation="TARITANPRNPQLIELKNVLNKLLDVLQVRVGSDMNAIHKIFEE
                     YKSLDFRNKLENASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTT
                     SSNSQAQSLEETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLA
                     LNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKE
                     QTAGITQINDSVAQIDQTTKDNVEIANESAIISNIANNILEDIKKKRF"
BASE COUNT         1156 a          423 c          470 g         1132 t
ORIGIN      
        1 ttttaaatgc ttttgctttt gagcttgttt taaacacggg tcgcgaaaat aatcaagctt
       61 ttgcagtttt acatgcgagt aatgatttag aatttacatg tcaaaaattt attaccgaag
      121 caaaagttca ttttgaatgt gatattgtag gtatggttga taataaatta aaagatcaga
      181 gtttttctgc ttttgattta aaatttatac aagaagctca aaaaattaaa atgatcattt
      241 tgccaaaaat acaagcaaga atgtttgaca cttctcaaaa tatttatata gataaagaac
      301 tcagttcatc aagttcgcat aaaagtaagg cttttacttt tatttttaca ccagaactag
      361 cacctattaa agactatgat ggactcgatt ttaatatcaa ttttccacat gagagtttgc
      421 cttatgttgg agctttggat ttaaattctg atcctgttgt tattcctcaa agtgcagata
      481 tcaatactta tttacgcatc aaaaaagaat acgataaggc taattacaat caagtggtga
      541 ttgatgcaca aaatgctatc aatagatatc gtggcagtat ttttactagt gaatttatac
      601 tttataaatt aagagctcaa aataaacttt acactcaaga tccaagtatg cgtgatcaac
      661 aaattttaga aaagatgatt gatgatgcta aaaattggac gcgtactttt acaagtgata
      721 aaaatttttc agaagtttta catataatgt taagaactta tatcgcttta gctcagcgtg
      781 ctgatgtaga gtatacaatg tcgattttag ataatgaaca acctaataat tattttactc
      841 agttatcaaa acttgattat gcagactata tttataattt aaatgaaaaa gaaaaagctg
      901 taaatattta tgaaaatact tattttaata caaaaaattt agatttagct gcaagagcag
      961 ctatgagttt ggcaaagaat ttgctttcaa atgagcaagt aaataaagct atagaatata
     1021 ttaataccat tttaaaagcc aatcctgaat attttggaaa agatattcca agatctttag
     1081 aacttgctaa attatttaat caaaaaggac aatttgatat aagtgcaagt atttatgaag
     1141 atgcctttgc taaaatgtcc aaacttgatc caagttatga agaaacttta aaagatttag
     1201 ccttggtttt atcacatgct aacagatcta gtgatgctaa aaaatacctt gatttgtata
     1261 tggatgatta tttagatggt aagtatttag atgaaattaa aaaagcaagt gatgaggtat
     1321 tctttgcttt aggtgataat aatgcaagct ttttgcatca gcgttataca gatttaatga
     1381 agcaatatgc aaataaagat gagaatattg caaataaagc tttagatgaa gatgttgcac
     1441 tttattataa agagggaaat tttagtgcca ttttagctta taaagatctt atagaaagta
     1501 aaaaaattcc aaatgctact caatttttag agaaagcagc cattaatgat ttaaaaaatg
     1561 ccataaaagc tgataattgt atcaatgctg caaatatttt tatgcgtttt agtgcttatg
     1621 atataggtca gaaaattgag aataaaaaac aaatgttagc ttgtcttatc agaacttcta
     1681 atgttgaaca agcacttgat tatatagata aaaattataa tgaagattct atattttatg
     1741 gtcttcaaaa agcatctatt ctttttgaca ataaacaata tcctcaggtg attaaaattt
     1801 ctaaagacat agctaattct agaattttaa aaagtgatga tgagaatttt aaggcttatt
     1861 atttgcaatt tttatcttta ttgcgtttaa atgactataa tcaagccatt aaaattttgc
     1921 aaattttaga aagttttcca atgaatttta gtatggtgga agcttatgat gctttacttt
     1981 cttacgctaa tgatcataat atgcaaacaa ctattttaac ttacgcacct aaggccattg
     2041 actatcaaaa ttttaaaggt ataaatcttt ttagtcctaa tttagaattt atatatcttg
     2101 atgctttgac taaaatcaat aaaaatgaag aaagtttagc tgttttaaca gatttactta
     2161 aattaaaact ttcagatgaa gatagagcaa gagctttata tatccaagcc ttaacttatg
     2221 aaagaatgca aaatatacaa gctgaaaaag aaagtttaaa acaatgtctt gaaatcaaaa
     2281 gtgcttcaaa ttggcagaat ttatgtaaga gtaaaaatca aattttaaat caataagtaa
     2341 atttagagat aactagcttt ttggctagtt atctaaggtt aaaacctctt cttcttaata
     2401 tcttctaaga tattattagc tatattagaa ataatagctg attcattagc aatttcaaca
     2461 ttatctttag tagtttgatc aatttgagct acgctatcat tgatttgagt gatacctgca
     2521 gtttgttctt taatactttc tgccatatca ttgatagatt gaacaagtaa attagtatta
     2581 gcttcaattt cagataaaga cttttgagtt ctttcagcta actttctaac ttcatcagct
     2641 accactgcaa agcctctacc atgttctcca gcacgagctg cttcaatagc tgcatttaaa
     2701 gctaaaagat tgatttgatc tgcaatatca cctataatac ctgtaacatt tttaatctct
     2761 tcagattgag tgataacatc actagtttta actgaaacat tttgcataga agaagtgatc
     2821 tcttctaaag ctgctgcagt ttcttctaaa gattgagctt gagaatttga agaagtggtt
     2881 aagctttgaa cagcagtttg taattttcca ctttcattag ctaaagcatt agcaaagtct
     2941 gaactttgtt ttagcatttt aactatttca tcacctaaag cattagtagt taattctaca
     3001 ctaccgctag cattttctaa tttatttcta aagtctaagc ttttgtattc ttcaaaaatt
     3061 ttatgaatag cattcatatc agaacctact ctaacttgta aaacatcaag aagtttattt
     3121 agaacatttt taagttcaat aagttgtggg tttcttggat tagcagtaat tcttgctgtt
     3181 a
//
LOCUS       DAPIWV010000137         3172 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.139, whole genome shotgun sequence.
ACCESSION   DAPIWV010000137 DAPIWV010000000
VERSION     DAPIWV010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.139"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            44..265
                     /locus_tag="RJ272_001641"
     CDS             44..265
                     /locus_tag="RJ272_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382692.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(290..1297)
                     /gene="pyrC"
                     /locus_tag="RJ272_001642"
     CDS             complement(290..1297)
                     /gene="pyrC"
                     /locus_tag="RJ272_001642"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HDV7382693.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRIIKACKDENFTPLMTLFFENYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFRQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(1306..1533)
                     /locus_tag="RJ272_001643"
     CDS             complement(1306..1533)
                     /locus_tag="RJ272_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HDV7382694.1"
                     /translation="MKFEKLIQEILGKKRFELLKFLCENADENGFIMIKISELEEKLN
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            complement(1530..1886)
                     /locus_tag="RJ272_001644"
     CDS             complement(1530..1886)
                     /locus_tag="RJ272_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDV7382695.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASTAVFFSV
                     LLALFVWSFILYSIYL"
     gene            complement(1883..>3172)
                     /locus_tag="RJ272_001645"
     CDS             complement(1883..>3172)
                     /locus_tag="RJ272_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HDV7382696.1"
                     /translation="YGVLIDSDMIQNVVQTDIKEVKDLLNLKLILFVVLALLLVFYVV
                     KVKIDYYGSFKSHLKIKIINIISGLIVVCAVLIPLSKTFLPFFRNYNEIRMYNTPFYQ
                     IYAVYRYYVRFVKAKPEFKTIANDAYRENNHTKKLLVLVVGETARAANYSLGGYAKND
                     TNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSISKRENYSSSEFQENAMDVLYKTGVD
                     TAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLLAPFKEKLNHLSDQNIIVLHLQGSHG
                     PTYYKRYPSEFKKFTPTCDTNELSKCDSEALINTYDNTLLYTDYLLSEIIKLLKEQKS
                     YESSLFYLSDHGESLGENDIYLHGMPYAIAPSYQTRIPAIFWSNDEKLMNLAKEHKGL
                     KLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKLKANP"
BASE COUNT         1123 a          528 c          391 g         1130 t
ORIGIN      
        1 gatatttatt acaatttcac tcattatttc aaaggagttt ttaatggtta aaaatttaat
       61 catcaaattt ggacgcttga ttcttgatgc aattgcagcg ataagttttg ttgtagcttt
      121 gctttattct ctttttatga tgtttagcat tggattttta gctggtttat tatcgctgat
      181 agtcagtttt attgctttat ttttaagttt ttttgtaatc tatcttgtta tagatatcag
      241 agatgctctt gtaaataaag cttaaatttt ccacctttaa ggtgggaaat caatgtttta
      301 attgaaattt taaaatttct ccagccatat aaggcacgac ttgattgtat ttatcttcat
      361 aaacatttgg cacttgccat tctttttctt ctaaagttaa aattttatct tctttaaatt
      421 ttaaatcata aattttacaa gcattatcgc ttaaaaattt ttgcaaattt tcttcagaac
      481 tattttgcct aaataattca gccaacacag gtaaaatcac tggggcgcta aatacacctg
      541 cggcacaacc acaacactct ttagtatctc ttgggtgagg cgcactatca cttccaaaca
      601 taactttttc ataaccacta aaagcaagtt cgcaaagggc ttctttatct tcgtaacgct
      661 tggctatagg cttacaaaaa agatgaggat tcattttacc tccgataaca tcatctaaag
      721 tgatgattaa atgatgtaaa gtgattgtcg cgtataaatt ttcataatct tttaaaagtt
      781 cacataaagt tttagtggta atatgctcca taacaatctt aagtcgtgga aaatgtttgg
      841 ctaatttttc ataaatttta gcaaaattac tttccctgtc cattacaaaa tcattggttt
      901 ctccatgcac tagcaaagga atatttaaat cactcatagc ctctaaagta ggttttaaat
      961 actctatatc aaaacttgaa actccgccat ttgaatttgt tgtaattcct gctggataaa
     1021 gcttaatgcc aaaaatttca tctttagcac tgtaaagaaa tttctcatca taattttcaa
     1081 aaaaaagtgt cattaaagga gtgaaatttt catctttaca agccttaatg atacgcattt
     1141 tataagcttt tagatcttct aaattgcaaa gtggagggat taaatttggc ataatcacag
     1201 ctgcacaaaa atctcttgca ctcaaaggtg caataagttc taacatttga ttatctctta
     1261 aatgcaaatg catatctaaa ggatttttaa gtttcatttt atctcctata tttttagctg
     1321 ataaaatcca tttttaagac gcttaaaaag ctttttttct tctaaaaatt taaaagtagc
     1381 gatgatagtg ggcttgcttt ggtttaattt ttcttcaagc tcactgattt taatcataat
     1441 aaaaccattt tcatcggcat tttcgcataa aaattttaac aattcaaaac gcttttttcc
     1501 caaaatttct tgtattaatt tttcaaattt cataagtaaa tgctatataa aataaaactc
     1561 caaacaaaaa gagctaaaag cacactaaaa aacactgccg tactcgcaca atctttagca
     1621 atttttgcct tttcatgcca ttcatttgta atcaaatcaa cacaagcttc aatagccgaa
     1681 tttaaagcct ctataattaa aataagcatt aaaacactta ccaataataa atgctccaaa
     1741 aaactaactt ttaagaaaaa actaaaaact atcgcaggga taataataca aagttcaatt
     1801 ctaaacgcca tttcattttt aaataaagca aaaatccctt ctaaagcata tcttgcatta
     1861 tttaaaaaat gatatttagg cttcatggat ttgccttaag tttaggattt aataaatcat
     1921 attctggctc ataaacactt gtttttacat caaaatatcc taaaagagta ctaaaaagat
     1981 tatcttgaga aagttttaaa cctttatgct ctttagctaa attcattaat ttttcatcat
     2041 tgctccaaaa aatagcagga atacgggttt gataacttgg cgctatagca taaggcatac
     2101 catgaagata aatatcattt tcacccaaac tttcaccatg atctgaaaga taaaacaaag
     2161 aactttcata gcttttttgc tcttttaata gttttataat ctcacttaaa agataatctg
     2221 tataaagtaa agtattgtca taagtattga tcaaagcctc gctatcacat tttgaaagct
     2281 cattagtatc acaagttgga gtgaattttt taaattcact tggatagcgt ttataataag
     2341 ttggcccatg agaaccttgc aaatgaagaa ctattatatt ttgatcactt aaatgattta
     2401 atttttcttt aaaaggagcg agtaaatttt catccaaatc actagaaagc ttttgcttat
     2461 aagctaatct atcacaaacc cctttacaac caccagaatt attatcaaac catgcagtat
     2521 ctacacctgt tttataaagc acatccatcg cattttcttg aaattctgaa cttgaataat
     2581 tttcacgctt agaaatagaa aacatacaag gtaaacttac cgctgttgct gttccacatg
     2641 atgaaaaatt atcaaaaaac actacattat cttttttggt ataaaaattg gtatcatttt
     2701 tagcatatcc acccaaagag taatttgccg ctctagcggt ttcacccact accaaaacta
     2761 aaagtttttt agtgtgattg ttttctctat aagcatcatt agctatagtt ttaaattctg
     2821 gcttagcttt tacaaaacga acataatagc gatatacggc ataaatttga taaaaagggg
     2881 tattatacat tcttatttca ttatagtttc taaaaaaagg caagaaagtt ttacttaaag
     2941 ggattaaaac cgcacaaaca acaatcaaac ctgatattat attgataatt ttaattttta
     3001 gatgggattt aaaactacca taataatcaa tttttacttt aacaacataa aaaaccaaca
     3061 ataaagccaa aacaacaaat aagattaatt ttaaatttaa caaatctttt acttctttga
     3121 tatctgtttg aacaacattt tgtatcatat cagaatctat aagcacccca ta
//
LOCUS       DAPIWV010000138         3171 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.140, whole genome shotgun sequence.
ACCESSION   DAPIWV010000138 DAPIWV010000000
VERSION     DAPIWV010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3171
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.140"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            132..1196
                     /locus_tag="RJ272_001646"
     CDS             132..1196
                     /locus_tag="RJ272_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDV7382697.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1186..2970
                     /locus_tag="RJ272_001647"
     CDS             1186..2970
                     /locus_tag="RJ272_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HDV7382698.1"
                     /translation="MTLENYAIFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLTDYELYRYFQDKNFTSKKAYLSVFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLLRLINSALKFNF
                     NTHKLFKDFYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGIL
                     KLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFYNQHSYKWQQ
                     NLCYDIAFFNEKDELCEGSRTNLILEKNSQFYTPQIQSGMLNGVYRNFLINLGLIKEK
                     ALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            2967..>3171
                     /locus_tag="RJ272_001648"
     CDS             2967..>3171
                     /locus_tag="RJ272_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDV7382699.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKA"
BASE COUNT         1275 a          428 c          415 g         1053 t
ORIGIN      
        1 aaaatatttc aatctttttg ccttgcatat aaaaacaaac tttttcctaa aaaagctttt
       61 ttttactaag ttaatactaa aatacctttt ctagttaaaa agctaaaatt ttagatttag
      121 gaaaagtttt tatgaaatac cctttagatt gtgaagaaaa ttttgaaaaa tcattcttat
      181 tttggttagc aaaatatgta aaatttaaac tcaactcact atctaacaaa gagttaaaaa
      241 atccacaagc tttagcagaa gttaattttg ctcttacaaa aggtgtaaaa aatattgatg
      301 aacttgacgc tctagcaaaa aaagcaagaa atgctggttt aagtggagtt aatacttatt
      361 ttaatccttt aaaaaaagta tttgaatatt taaattttta taagctttac tctttaaaac
      421 agattgatga agaactcatt gtagaagttt tagcaagtat aacaggtgct ttatcagatg
      481 caagcaaaaa aaattaccgt attgctgtga ttaatttttt tgatttttta gacaagcaaa
      541 atgaagaaga tgaaaaagca catattttcg atatcaatct taaaaactgg gcaggtatag
      601 caggttctaa aggggtaaaa ttacctgaat ttatgagtga agaagagctt aaaaaatttc
      661 ttgatgctat tgaaaatgca gattttaaaa acaataccat acgcaataaa cttattatta
      721 aaatcatcat ttttacaggc atacgggtaa gtgaagctat caatatcaaa atgggtgata
      781 ttagcgaaga aaacgatctt tatatcataa gaataagagc taaaggcaat aaatatcgtg
      841 ttgtaatgat aaaaaaagaa cttatttacg atttgcttaa aaatgtaagt attaattata
      901 tgagtaaaga cgccctactt tttgtcaata aaaaaggcac tccactgact caatcttatg
      961 ttagtcgcat agtagaacag cttttatttc gtgcaggaat tcgcaaacaa aaaaatggtg
     1021 ctcatatgtt gcgtcatact tttgccaccc tgctttataa aaagcaaaaa gatttagttt
     1081 tagttcaaga agctttaggg catgcaagtt taaatacctc aagaatttac actcattttg
     1141 ataatgataa attaaaactt gccgcacagg ttgcaaagga attaagtgac tcttgaaaac
     1201 tatgctattt ttggtaaata tttttaccat gatttaaaac acactttaaa agcctttaac
     1261 cacaaagaaa gtaaaaaatg ctttaaattt atagaaaaat ataaaaatga tttttatatt
     1321 ttaatgctta ctgattatga actatataga tattttcaag ataaaaattt cacaagcaaa
     1381 aaggcttatt tgtctgtatt tgcttttaaa aaaagaaaaa aatttcaaaa agaagatatc
     1441 gatgaagaaa aatttattcc tgaatttata aattttttag atcaagataa ttacaaagaa
     1501 aatttcatca aggttaaaga ggcaatctcc aaaggaagag tttatcaaat caaccttact
     1561 caaaatttta aatttcatag caaaatggat tcttttgaac tttttaaact tttgctttct
     1621 agacaagata ctgaatttaa agcttttata aaagatgaaa caagagaaat tttatccttt
     1681 tctcctgaac ttttcttcaa aaccaaaaaa agaaaaatat ttacaaaacc tatgaaaggc
     1741 acaattaagc gtgataaaga tcctataaaa gatgaagaaa ataaaatttt cttgcaaaat
     1801 gatacaaaaa atctgagtga aaatgttatg atttgtgatc ttttacgcaa cgatctttca
     1861 aaaatcatca caaaaaaaag cttaaaaaca aaactttttg aaattcaaag tcaccctact
     1921 ttacatcaaa tgacttcaag cgtacaagga aaacttaaaa aaaatatttc tttatatcaa
     1981 atttttaaag ctctctttcc ttgtggttct attacaggtg ctccaaagct tgaaagtatt
     2041 aaatttattg aagaattaga acaaagagat cgtggtattt actgcggaac tataggttta
     2101 atacacaaaa ataaaaataa atttagcgta gccatacgca ccttagaaaa acaagatgaa
     2161 atttatactt atagcaccgg tagtggcttg gtttgggact caaaattcaa agatgaattc
     2221 gaagaattaa aacttaaaag cgcgatctta aatccttgtg attttcatct ttttgaaacc
     2281 atgtatttta aaaattctca aattttattt ttaaaagaac atttattaag gcttataaat
     2341 tcagctctta aatttaattt taatactcac aagctcttta aagattttta taatgtttta
     2401 aatcaaaaaa gttcttataa agaatatcaa aattttacac tttttaaact cgatgaaaaa
     2461 attttccaca aaaaacactc tttattttat aattttcccc taccctttaa aaatccacat
     2521 aaagaaggaa ttttaaagct tattttatac aaagacggaa gatacgaatt tcaacaaagt
     2581 gccttaaagc aaaattcaaa cgatattttg cttttaagtg atgataaaat taactcaaaa
     2641 agtgacaatc tctatcacaa aagctctttg cgtacttttt ataatcaaca ctcatacaaa
     2701 tggcagcaaa acttgtgtta tgacatagct ttttttaacg aaaaagatga actttgcgaa
     2761 ggctcaagaa ccaatctcat cttagaaaaa aactctcaat tttatactcc acaaattcaa
     2821 agcggtatgt taaatggagt atatagaaat ttcttaatca atcttggttt gataaaagaa
     2881 aaagcattat ttaaacaaga tttatttgaa gcagaaaata tttattgtat taattccgtg
     2941 cgtggtttaa aaaaggtaaa attacaatga agaaaatttt atttatagat aattatgatt
     3001 cttttagtta taccatcatc tattatctta aagaacttgg ttttgaatgt aaagtgataa
     3061 aaaatgatgc ctttaaaaaa gctaaagaat tagaaaaatt tgatttcact catcttatca
     3121 tctctcctgg ccctcattct cctaaggaat ctaaattaag cttaaaagca a
//
LOCUS       DAPIWV010000139         3003 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.141, whole genome shotgun sequence.
ACCESSION   DAPIWV010000139 DAPIWV010000000
VERSION     DAPIWV010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.141"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            111..341
                     /locus_tag="RJ272_001649"
     CDS             111..341
                     /locus_tag="RJ272_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382700.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            331..573
                     /locus_tag="RJ272_001650"
     CDS             331..573
                     /locus_tag="RJ272_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382701.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            567..1007
                     /locus_tag="RJ272_001651"
                     /pseudo
     CDS             567..1007
                     /locus_tag="RJ272_001651"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
     gene            989..2842
                     /locus_tag="RJ272_001652"
     CDS             989..2842
                     /locus_tag="RJ272_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDV7382702.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITGYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECHKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIQVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(2852..>3003)
                     /locus_tag="RJ272_001653"
     CDS             complement(2852..>3003)
                     /locus_tag="RJ272_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDV7382703.1"
                     /translation="IDYFIKNKSLIYTFFNIFENELNHLKQTHPHIIDSWKYYKEFEK
                     IYKDK"
BASE COUNT         1113 a          336 c          512 g         1042 t
ORIGIN      
        1 tgctttaatt aaaaattaat tgacaataaa aacctaaatt taaatttttt tctgctacaa
       61 tatcaaataa tattttccat aaattacaaa ttttttaaga aggcaaaaat atgtttgatg
      121 aaaaaataat caatactatg acagataaag taaatgaatt aattgaaaag tataacgaag
      181 tttgtgaagc caatgaggct ttaagaaatg agcttgtaag cgttaaagca caaaatgaag
      241 caaaaagtaa tcaaattatg cgtttagaag aagaacttaa atctcgcaat atagaaagcg
      301 aagatattta taagaaaata gaggctgttc ttggcagata atctaaaaca agtcattgtt
      361 aatgttaatg caaaagattt cattgttaag tgcagtgaag aatttgcaaa ttttttagaa
      421 gatgatatcg ctttgatttc tggcggtact aaaaaaatag aacttaaacg ctttgtagat
      481 gcgtttgtta aaaaaagtta tgaaaattat attttagaaa gagaacttaa gaaactaata
      541 aaagcaatca atgaagaact cccgacaaaa tgaataaagc ttttactctg cttgagcttg
      601 tttttgtgat tttgattttg ggaattttgt caagcttatc tttatctttt atcaatacta
      661 caaaagatga ggttaaaatt ttaaaattaa aaatggacta tgaaatgcta agctcagctc
      721 ttgctttaat gcgtagtcaa atgagactta aaaatttaaa ttttccagaa attttagata
      781 atgcgcaaaa caatcaagcc aaagaaaaac tcttttattg tttaaatgat tgtgattatt
      841 ctttgcttga tacacctatt tattctgatt ttaaatcttg gataaaaata ggtaaaaatc
      901 actatagatt tgcattaaat gctaaagaga tggttgaatt tatttatgat tctaaagaag
      961 gtttgttaaa gtgtatagga agttctagat gcaaagatct gatataagat attatgaact
     1021 tgcaatttgt ggtttgtatt tggataattt aacttttcat agttttgatg aaatcaaacc
     1081 tttaacacaa gtattagtgg atttaaaaac taaaaaaaac cttaaagcta tcgtgcttaa
     1141 agaatgtcaa aaacctgatt ttaaaaccgt agaaattaaa gaaattacag ggtattttct
     1201 aactcctttg cagtttgaat tggcaaattt tattgtttat tattatgctt caaaacttgg
     1261 ttttgttttg ggtttttttg aaactagtcc taagtatgaa tgtcacaaaa tgttttttaa
     1321 agatactcct aaactaagca atcaacaaca aaatgcctta agttttcttc aaaaagaaaa
     1381 taattccttg ctttttgctg atacgggtag tggcaagact gaaatttata tttctttgat
     1441 aaaagagtgt ttagaacagg gtaagcaagc tttgcttttg atgccagaaa tcgcacttac
     1501 tccacaaatg caaaagcgtt tagaagtgta ttttaaggat aattttttcc tgtggcattc
     1561 taaaatttca aagaaaaaaa agcaagaata tttagagcgt ttttgcaagg gagaagtgct
     1621 tttagtagcg ggtgcaagat cggctttgtt tttacctttt agaaatttag gacttattgt
     1681 agtagatgaa gaacatgata attcttataa ggcttctaac cagcctttta tcaatgcaag
     1741 agatttagca ctttttttgg gtcaaaaaaa taatattcaa gtggttttag gttctgcaac
     1801 cccatcttta acgagctttt acaaacaaaa aagttttaga ttaaaaggaa ctttttttga
     1861 gagtaaaaaa cattttttat atgatgaaaa tgagcttggt ataacgccta tgcttttaag
     1921 tgaattagaa aaaagtttaa aacatcaaaa gcaagctata gtgtttttac ctacaagggc
     1981 taattttagg caaatcattt gtaaggattg cggagaaacg ataaaatgtc ctttttgttc
     2041 tattgctatg agtatgcata aaaagaaaaa tgttttaaaa tgtcattatt gtaattatac
     2101 ttctttaata gagcaaaatt gtccaagttg caaaggagaa atgttagaag ctagaaaaat
     2161 ggggactgct gaacttttag agcttttgca aaatgctttg cctttagcaa aaatagcaaa
     2221 atttgatagc gatgaaatca caagcgttaa aaagcttaat actattttaa aaaactttaa
     2281 tgaaaataag atcgatatac ttattggcac ttctatgctt gctaaaggac atgattatca
     2341 tagtgtggat ttgagtgtga ttttagggct tgatgaatat ttgttgcgtc ctagttttag
     2401 agcgagtgaa gaaactttag ctttagctat gcaagttgca ggcagggcag ggcgtaaagg
     2461 cgaagcaaga gtacttttgc aaacaaaaaa tagagctttt tttgaaaggt atatagagaa
     2521 ttatgatgct tttttaaaag atgagttaga aaatagaaaa gatctttacc ccccatttaa
     2581 acgcctttta agagttctta tagaagataa agatcaaaaa agtgcacaaa aactttgtga
     2641 aaaatttgct tctcaattta gaaatatcaa acaggtagaa ttggtaggct atggaatttg
     2701 tggagttgaa atgctgtatg gaaaatatcg tttttatttg ttgcttagaa gtgaaaatca
     2761 taaagcttta gtggcaattg aaaattatat tttgcaattt aaaaatgcaa gtgcggatat
     2821 tgatcctatt gattttgtgt aagtgatatg attatttatc tttgtatatt ttttcaaatt
     2881 ctttataata tttccaagaa tcaataatat gaggatgtgt ttgttttaaa tgatttagtt
     2941 cattttcaaa tatattaaaa aaagtgtaaa taagtgattt attttttata aaataatcta
     3001 tta
//
LOCUS       DAPIWV010000140         2996 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.142, whole genome shotgun sequence.
ACCESSION   DAPIWV010000140 DAPIWV010000000
VERSION     DAPIWV010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.142"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            54..716
                     /locus_tag="RJ272_001654"
     CDS             54..716
                     /locus_tag="RJ272_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HDV7382704.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPETAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALIEITKELSK
                     QK"
     gene            713..1513
                     /gene="dsbI"
                     /locus_tag="RJ272_001655"
     CDS             713..1513
                     /gene="dsbI"
                     /locus_tag="RJ272_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HDV7382705.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKSNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            1549..2972
                     /locus_tag="RJ272_001656"
                     /pseudo
     CDS             1549..2972
                     /locus_tag="RJ272_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
BASE COUNT         1032 a          387 c          564 g         1013 t
ORIGIN      
        1 acataaaaac ttaataaaaa gttttatcaa aaccaaattt caaggagagg gtaatgaaat
       61 ttccagtaaa attagcaaga tctattgttg tatgtgcttt tttagcaggt ataagtgcta
      121 gcgcattaag tgaaggtaaa gaatatgtaa ttcttaaaaa tcctattgct aacgctgata
      181 attcattgat tgaaattttt tcttatcact gtactcattg ttatgatcat cacaaattta
      241 ataccatggg taaagttaaa gaaaaattac ctaatttaac ttataaattt tatcctgtaa
      301 gttctatggg agattatgga aggcaagcta atgaaatttt tgcttttgcg acatttaagg
      361 atggtgtaaa taaaattgat cctacggata aaaatagctt aactcataaa gttgctgaag
      421 cttattttaa tgcatatttt aagaaaaaac aaagatggga aaatggtaaa aatcctgaag
      481 ctttttatag tgtcggttta aaagcaatga atgtaagtaa agctgatttt gaaaatttct
      541 taaaaactcc agagactgca gagcttttaa aaagttatga aattgccaat cctatttcgc
      601 aaaattatgg cacccctgct tttgttgtta atggaaaata tcaaatcgtt ccaagtgcaa
      661 tcaactctcc agaggctttg attgaaatta ctaaagaact tagcaagcaa aaatgagtta
      721 tataaaaatg aaagataatt gcagaaattt ttcactttcc aaatggcaag atacgcgcaa
      781 accttggttg attttgatta tagttactat aggacttact tgtatagcac attttttatt
      841 tcaagaatat ctttttatga aaccttgtga acaatgtgtg tatataagat ttgatatgct
      901 tgttatggct ataggtggta tgattgcatt aatcaaccct gcaaataata ttataaaaat
      961 tttttcttat agcttagctt tttatggaat ttggcttggc ttggagcatt gtctaacttt
     1021 aaatcatatc catgaagtgg ttcattctga aaatcctttt gcaggcgtag atggatgtcg
     1081 tgaaattcct atttatccat ttaatttacc tttgtataaa tgggctccta gttggttttt
     1141 gccaacagga gaatgcggga tggatacccc tgtagttcca gaaaatgctt ataatcatct
     1201 taatgctttt caaaaatttt ttataggaac tccacctgat tttgaaaatg ggctttatag
     1261 taatggttgg tatttgattc ctagtttaaa gtttatgaat atggcaattt gctgtcttat
     1321 agcattttta tgttgttttg tcgtgctttt tgcaatgttt atagcctatg ttttagataa
     1381 aaataaatct aatgctaaaa tttttgcatt ggtgattgtt gctttggttt tggtgcttaa
     1441 atttataggc gaatcaaaaa atccgaatca aaatatagct agtttaaatc aagtcgtttt
     1501 aagatactct taaaatagga tgtcttaaat aattttaaag gattgatcat gagacttagc
     1561 aaaactcttt gcatggcaat tttggcgggt tctaccctac ttgcacctaa tgctttaatg
     1621 gccatgggtg gtcctagtgg agtgaaaata gattggcaaa ttcaaggaca aatgggtatg
     1681 attaaaatga atccttatgg attgtctcct ttgaccgcta ttatcatgaa taatggttat
     1741 gtcttaagcg atataaaaaa atcaaatggt caaactattt cttaataatg tgaattctaa
     1801 aatggctaag acgtatggtg gaattcctat ttttggactt tatccttctt atagtaaagg
     1861 taagttatac taaaaccgca aatggtaaaa gtcaaaaagt cattgatgag atttataaaa
     1921 ttacaactcc atgggctagc atagaaccaa gcggaaggca ctgatcaaag aggaactctt
     1981 tttgaaaatg tgaaagtatt aaaaatggat ccaaaatttt cagataggct atatttagta
     2041 aataatgctc ctggaaaata atctggcaaa gactcataat ctgtatggaa taatcttgta
     2101 ggtggtgcta tggaatggga tgaaaattca aatgtcttta ttataagata ccaagggtga
     2161 aatcagatgg tattatgata acaataaact aatgaactgg ggtaatattt acaatcgtgg
     2221 aattatgata acaaagatgg agctttaact tggggatttg gtcaaagata tgtaaaatac
     2281 gatgtctggg aagagaaatt ttcaatcgca aattacctgc tgtctatata gattttttct
     2341 catgctatgg acaatatgca aaaaatgggc attatttctt caacaaatac tttgcgtcca
     2401 agatagtaag catgtacgca cagtgtgtga tactattata gaagtagatg aggatggtaa
     2461 tgttgttgat gattggagat tgtataagat tttagatcct tatagaagta ctattatcaa
     2521 aactttagat caaagtgcag tgtgtttaaa tatagatgca agtaaagtgg gtaaaacttt
     2581 aagcgatgaa gagcttgcca aaatggatga aagcgacaaa tttggagata tagcaggtat
     2641 aggtaggaat tgggcgcata taaagggtgg aataaagaat ttcaaaaata tttattgcaa
     2701 cctgtagata aaaatggcaa tgaatggttt tatcctgtaa cttctttaac tcaatatgaa
     2761 ccagataaag attctattat ggtttatagt gcaacgctgg aatggctttt aatcttagta
     2821 aaggtgtaag tcttggagaa ccaaaaccta aaattgatga atttaactgg ggcgctaagg
     2881 agccttcggt tcaaattcaa ttcagcggtt caggcacggg ttatcaagca atgcctttta
     2941 gtgttgatca agcattcaat cctaaaaaat aaataagccc aaatttattt ttgggt
//
LOCUS       DAPIWV010000141         2901 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.143, whole genome shotgun sequence.
ACCESSION   DAPIWV010000141 DAPIWV010000000
VERSION     DAPIWV010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.143"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            25..972
                     /gene="arsP"
                     /locus_tag="RJ272_001657"
                     /pseudo
     CDS             25..972
                     /gene="arsP"
                     /locus_tag="RJ272_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
     gene            982..1305
                     /locus_tag="RJ272_001658"
     CDS             982..1305
                     /locus_tag="RJ272_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDV7382706.1"
                     /translation="MQKFLTIISAINDESRILILYHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQGTWAYYGINNELLKLHLDLFENIKNLELKNAIKKNENII
                     TQICP"
     gene            complement(1313..1743)
                     /locus_tag="RJ272_001659"
                     /pseudo
     CDS             complement(1313..1743)
                     /locus_tag="RJ272_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
     gene            1823..>2901
                     /locus_tag="RJ272_001660"
     CDS             1823..>2901
                     /locus_tag="RJ272_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HDV7382707.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYHHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAI"
BASE COUNT          999 a          410 c          364 g         1128 t
ORIGIN      
        1 gaaatatttt taaaaggata aaaaatgcag tcttttttaa atactttcaa agagttttta
       61 tatctattta ctgagctttc tgtacttttt atagctattt cttttttagt ttctattatc
      121 aatcaaaaat acgaaggaat tttttaaaaa caacttgctg gtgacaaaat ttcaagttat
      181 tttaaagcta tatttttagg tgctttaacg ccattttgtt cctgttctac cataccgctt
      241 ttaagagctt ttttagaagc gaaagtaaaa cttagcatag ctttagctta tctttttact
      301 tcgcctctta ttaatcctat tattttttcc atgctttttg taacttttgg tttaaagtta
      361 agtttgattt atgtggtttt tttgatattt ttgatattta ttatttcttt tgttttttct
      421 aaatttaagg aagatagttt tttaaaacat attcctaaaa atacaaaatc aagtattttt
      481 acccaaagcg ctcacaatcc tagcaatttt atttttaaac aaaaatcatg ctgtgcaaat
      541 actcaagata agtctaaaaa tataacgata aactataaag aattattcaa agaaagtttg
      601 aaaaattata aaaaattatt accttatatc gttgtggcag tttttatcgg tgcttttatt
      661 catggtttta ttcctcaaga aattttacaa aaatacctaa atggcaatga aattttaagc
      721 attgcattag cggctttttt aggaattttc ctttatttaa gagtagaaac tattattcct
      781 ataggcttag cacttttaca aatgggaatt tctcaaggag tgattatgag ttttttaatc
      841 gctggtgctg gatgttcttt acctgagctt gttttactca aacaaatgtt taaaatgaaa
      901 tttttatttt tatttgttat gattatttta ggcgtggcta tatcttttgg aatttttatt
      961 aatttaattt aaggaaataa aatgcaaaaa tttttaacca ttatttcagc aatcaatgat
     1021 gaaagtagga ttttgatttt gtatcatctt ttaagataca aagaactttg tgtttgtgat
     1081 ctacaagagc tcttaaacat gggtcaatca agactttcaa gacatttaaa aattttaaaa
     1141 gatgcaggtt ttttgtatgt aaggcgtcaa ggaacttggg cgtattatgg gattaataat
     1201 gagcttttaa agctgcattt agatcttttt gaaaatatca aaaatttaga gcttaaaaat
     1261 gctattaaaa aaaatgaaaa tattattacc caaatttgcc cttaatataa aatcaaccct
     1321 taaacttatg caatttatca caaggttgat agtccttgct ttctggatta aacccatcga
     1381 cttcatttgc aagcatttct tcataaattt ttatcttttt gcttaaaact ttttcacttt
     1441 cttttaatgt tttaatctgg ttttgtaatt ttttctttgt ttgctttaac atctcttgtc
     1501 tctctttggc agtttttata cccaaagagc aaagttttat ataatgtttg atttgttcta
     1561 ttggcatacc tgaaattcga aaccattcta tccattttgc ccattctata tcgctttttg
     1621 aaaaatattt cacactattt tcatcttttt gaacaaaagg aaacaaacct ttttagccca
     1681 aaatcttaaa gtatgagcac taatttttgt ttctttttct acttttttta tagtataagc
     1741 catattttct cctttattta agataaaaat aaaaatttat tttatttttt tgtgataaaa
     1801 taatagccaa attattagtt ttatgctaaa aataacaaag attaaaagga aaataatgaa
     1861 tagtattaaa atcaaacttt ccctcattgc aaatttaatt gcaatttttg ccttaattgt
     1921 tctaggtatt gtaagttttt attttacaaa aacctcacta tatgaaagca ctcttaaaaa
     1981 tcaaactgac ctacttaaag tcacacaatc taccgttgaa gatttccgtt ccacaaatca
     2041 atcttttact agagctttag aaaaagatat cgcgaactta ccttatcaat ctttaatcac
     2101 tgaagaaaat attattaaca atgttggtcc aatattgaaa tattatcatc atagtataaa
     2161 tgcactaaat gtttatttag gtttaaacaa tggaaaagtt ttacttagtc aaaaatctaa
     2221 tgatgcaaaa atgcctgaat tacgtgatga tttagatata aagacaaaag attggtatca
     2281 agaagcttta aaaacaaatg atatttttgt tacaccagca tatttagata cagttttaaa
     2341 acaatatgta ataacgtatt ctaaagctat ttataaagat ggtaaaatca taggggtact
     2401 gggtgtcgat ataccatcag aagatttgca aaatttagtt gcaaaaaccc ctggaaatac
     2461 ttttttattt gatcaaaaaa ataaaatatt tgcagcaacc aataaagaat tattaaatcc
     2521 atccattgat cattctcctg ttctaaatgc atataaactc aatggtgata acaacttctt
     2581 ctcttataag ttaaataatg aagaaagact tggagcttgt actaaagtct ttgcttatac
     2641 agcttgtatt accgaaagcg ctgatattat aaataaacct atttataaag ctgcatttat
     2701 tcaagccatt gttgtcatta ttgtagtagt atttagcgtc atcctccttt atttcatcgt
     2761 atcaaaatac ctctccccac ttgcagctat ccaaacaggt ttaacttcat tctttgattt
     2821 tatcaactat aaaacaaaaa atgtttccac tatagaagta aaaagcaatg atgaatttgg
     2881 acaaatctca aatgctatca a
//
LOCUS       DAPIWV010000142         2853 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.144, whole genome shotgun sequence.
ACCESSION   DAPIWV010000142 DAPIWV010000000
VERSION     DAPIWV010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.144"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            177..860
                     /locus_tag="RJ272_001661"
     CDS             177..860
                     /locus_tag="RJ272_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7382708.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPRQAR
                     KMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYEKTFHI
                     KIPLVYKLS"
     gene            complement(952..1774)
                     /locus_tag="RJ272_001662"
                     /pseudo
     CDS             complement(952..1774)
                     /locus_tag="RJ272_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(2203..2297)
                     /locus_tag="RJ272_001663"
                     /pseudo
     CDS             complement(2203..2297)
                     /locus_tag="RJ272_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1057 a          446 c          322 g         1028 t
ORIGIN      
        1 ttagagaagt aaatagcaaa aattaaatat cttttagata caagcttgat tatttgattg
       61 ttatttttct ctgtgaaatt tgtttcaaaa tttatctttt taaacaattt atcatagaat
      121 gtgtttaaga aataaagata tttaaatcaa aaaataaaat cataacggag taaaagatga
      181 aaacatttat aagcaatcat aaaaaccaat cttcttttat cactttattt gtttttacac
      241 ctttattttt tgtttttctt tattctaaag attttttaca catacaaccc aatgaaacta
      301 ttaaagaaaa taaatttaat atggcaatca aacattttgt acaaaattcc tccgatatga
      361 aacctacaca acctacacaa actatacaag agccttcgaa tgtgcaaccc aaagaacctg
      421 tgcaagaaat aaaaaaaata aaaccgagaa aagaaaaacc tatcgctaaa cctaaaaaaa
      481 taatccctcc agcaaatgca aaggcaataa gtcaacccaa aaaagataca aacatgcagc
      541 aacaaactcc acaagccagc tcttaccaaa gcgtatcttt aactagtaat agtgagcttt
      601 taaaagaaat aaaatcagca atcgatgaag ccctaatcta ccctagacaa gctagaaaaa
      661 tgcgtatgag tggggaggtt cttgtagaat ttacctggac aaaagaaaag aaattagaaa
      721 atttaaaaat acttaagcct tcaaaatatg attttctaaa taaaagtgct ttagaaacta
      781 tacgcatagc ttctaaaaaa tttccacaat atgaaaaaac ttttcatata aaaataccat
      841 tggtatataa attaagctaa atctttcaca atatactcta tttttaatac aaatcactcc
      901 agctttgcta acgcttagaa gtagaagctt cctagctaaa gctaactagt attagctaat
      961 tcgaaaggct ttgagtttat agtcctcaag gctaattcct aacccaaacg actttaatcc
     1021 acgctttaag atattatttg cagcattaat atctctatgt aaagtattgc cacatttttc
     1081 acaaagatac actctatctt taaacataag attttttttg atatttccac atacactaca
     1141 agttttgctt gtatattgtg gattgacttt tataaagaat ttgccattat gctttgcttt
     1201 atactctaga tattgagaga attgatagaa tgaagtatta agaatagatt tatttaaacc
     1261 acttttagct tttatattct ttaatttagc tcttttacac atattcttaa tttgcaaatc
     1321 ttcaactgct agcaagtcaa attcttgtat gagttttgaa gttatcttgt gataactatc
     1381 ctttttgata tttgaacttt tttcatagat tttatttaat tttaattgtg tttttttgaa
     1441 attatggctt aactttgttt tctccttttt tgtttttaat attctcctgc tttgttttct
     1501 ttgcaatctt ttaatattca gctctactaa gtagctttaa gttagtagct attaactctc
     1561 cactgcttaa ggtaatctca ttgatattta aatcaatgtc aactgctttt ttaatatcaa
     1621 aatctttgct agatattaaa gaaacatttg attcatcata aatgatacta aaagctaaat
     1681 agtatttatt gtgatttttg ataatagtga tttgattaaa cttataagta tttggtaaat
     1741 ctctgtgata acgcatttta aaaaatgtat tcataagtct aaatatctta aacttagtag
     1801 tatcactatc tttgattttg taggcttgat tattccaatt aaagctttgc tttgcaaatt
     1861 tagagttttt aaatttggga aagccttttt tttatctcta attgcttgct ctaaggcacg
     1921 agaagattaa tccttgcttg ttgggttaca acacttttat agcttaattc tcttgctttt
     1981 ataaggctag ttttattgat tatctatctt acttgccttt aaataactcc tatctttttt
     2041 atctaaattc ttatttttat cccactgctc ttgctgtaaa tttaaacaaa tattataggc
     2101 ttgatataga tgaaacattg atgattaata agcttttgtt gttctttgtt taggtagaat
     2161 tctatattta aaacctttgg ttatttgcat tgctttgttc cattagggct ttttttcttt
     2221 ttggttatat attttttctt agggtaatta tcttctatgc cttgattttc tgcatatttt
     2281 ttaagagttt ctagcattat tccgcatagg tattctataa aaatactgat tatgtcaaat
     2341 acctaactag agccgtacaa ctaacactgt aagcaattca tctcccactt aagaagtgag
     2401 agttttattg aataaaaaaa gataaattta aagcaagtaa tcttttttta gacaacacta
     2461 aacccttgca tgtatttaca gtaatattta tttcatcata aacaaccccc aacccataaa
     2521 cctcaataaa cactataaaa taaacttgag tgattaaaaa tccaacccaa ttattgaaca
     2581 aacccaacct acataataaa atataaacta gacatataaa gaacaattga cacataaaaa
     2641 tagattgaat aaataaacct atacaagtaa acataaagat taattattga tacaaaagat
     2701 tcaataaata aaaagaataa ttgagatata aaaacatata aactaaacaa ctcaaacaac
     2761 cattaaatta acccaagcca atcaacaacc atagctaagc tgacaacaca acaaatcaat
     2821 ttaaatataa aactacaaat taaatcaacc caa
//
LOCUS       DAPIWV010000143         2812 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.145, whole genome shotgun sequence.
ACCESSION   DAPIWV010000143 DAPIWV010000000
VERSION     DAPIWV010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.145"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            27..1247
                     /locus_tag="RJ272_001664"
     CDS             27..1247
                     /locus_tag="RJ272_001664"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7382709.1"
                     /translation="MEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDLA
                     LNTQQATLITSMIVVAKIFGASFTAFLVYKFGLKKGYFLGCILMSSGIFLSFVDSYSG
                     ILIIRFLTGLGSACALVCLVPIAQQWFEKKALHFVISFNITSNLVGITLGLVLAESIS
                     NYFGNWRDSLSFYAWINLILLILWLFVGKDENKKEEKKNNAKDLIYALKSRVTWGMII
                     FYIEPILFLNSLFAFLPTFYAQYAGFSKELADFAKKEIPALANFAIIFGPYLGLFFKR
                     KNISFKIMLLSGGACIFICGFCMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELK
                     NSNPNQTAYIMSAFWSITFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISAILAQ
                     FVLPRRENFIQGEK"
     gene            1249..2400
                     /locus_tag="RJ272_001665"
     CDS             1249..2400
                     /locus_tag="RJ272_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7382710.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGNDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNYRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2404..>2812)
                     /gene="yaaA"
                     /locus_tag="RJ272_001666"
     CDS             complement(2404..>2812)
                     /gene="yaaA"
                     /locus_tag="RJ272_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDV7382711.1"
                     /translation="FSNLFGVVRANDTLPFYKFKQGAKIGNFTIEKFYKEHFSKALDE
                     YLENEEILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVK
                     NNKELLANLPSNLKLKEIQIKGLKEEIALEILD"
BASE COUNT          891 a          339 c          512 g         1070 t
ORIGIN      
        1 aataaatatc taaaaaggat tttaatatgg aaaaatcact tttatttcat tttagacgca
       61 ttggagttga atttatcatt tttagtgttt atgctgtttt tagtatctct tgggcagcaa
      121 cagggtcttt aatgcctttg atttcaaacg atcttgccct aaatactcag caagctactt
      181 taatcactag catgatagtg gttgcgaaaa tttttggtgc ttcatttact gcttttttgg
      241 tttataaatt cggattaaaa aagggatatt ttttaggctg tattttaatg agttcgggta
      301 tatttttaag ttttgtagat agttatagtg gtattttgat tataagattt ttaacagggc
      361 ttggttcagc ttgtgcttta gtttgcttag tgcctattgc acagcaatgg ttcgaaaaaa
      421 aagctttaca ttttgtaatt agttttaaca taacttcaaa tttagtaggc attaccctag
      481 gacttgtttt agctgaaagc atctcaaatt attttggaaa ttggagagat tctttatcat
      541 tttatgcttg gattaatttg attttattga ttttgtggct ttttgtaggt aaagatgaga
      601 ataaaaaaga agaaaaaaag aataatgcaa aagatcttat ttatgcttta aaatctcgtg
      661 ttacttgggg tatgattatt ttttacatag agcctatttt atttttaaat tctctttttg
      721 cttttttacc aactttttat gcacaatatg cgggttttag taaagaatta gctgattttg
      781 ctaaaaaaga aattccagcc ttggctaatt ttgctattat ttttggtcct tatcttggat
      841 tattttttaa aagaaaaaat atttctttta aaataatgct attgtctgga ggagcgtgta
      901 tttttatatg cggattttgt atgttatttt tacaaaattt agtattgata cagatttttg
      961 ctgtgttatc aggcattttt tattctatgt ggtttccatt tttctttaat ctaccttcag
     1021 aactaaaaaa ttccaatcca aatcaaactg cttatattat gagtgctttt tggagtatta
     1081 cctttgttat actatcattt aacctatggg tagtatcttg gagtgttgat aaaacccata
     1141 gttttacttt gggttttgtt tatatttttg ctttgatttt tatttcagcg atcttagcac
     1201 aatttgtttt acctagaaga gaaaatttta tacaaggaga aaaatagaat gaatttaatt
     1261 ccagaaatac tagacttaca aggcgaattt gaaaaaattc gtcatcaaat tcatgaaaat
     1321 cctgagcttg gttttgatga attatgtact gcaaaattag tggcgcaaaa attaaaagaa
     1381 tttggttatg aggtttatga ggaaatagga aaaacaggcg ttgtgggggt tttaaaaaag
     1441 gggaatagcg ataaaaaaat aggacttcgt gcagatatgg atgctttgcc tttgcaagaa
     1501 tgcacaaatt tgccttataa aagcaaaaaa gaaaatgtaa tgcatgcttg cggtcatgat
     1561 ggacatacta cttctttatt gcttgctgca aagtatttag caagtcagaa ttttaatggt
     1621 actctaaatc tttattttca acctgctgaa gagggcttgg gtggtgctaa ggcaatgata
     1681 gaagatggat tgtttgaaaa atttgatagt gattatgttt ttggatggca caatatgcct
     1741 tttggtaacg ataagaaatt ttatcttaaa aaaggtgcga tgatggcttc ttcggatagt
     1801 tatagcattg aagttattgg aagaggtggt catggaagtg ctccagaaaa agcaaaagat
     1861 cctatttatg ctgcttcttt gcttgtggtg gctttgcaaa gtatagtatc tcgcaatgtt
     1921 gatcctcaaa attcagcagt tgtaagcata ggagctttta atgcaggaca tgcttttaat
     1981 atcattccag atattgcaac gattaaaatg agtgttagag cattagataa tgaaactaga
     2041 aagctaactg aagaaaaaat ttataaaatt tgtaaaggtc ttgcacaggc taatgatata
     2101 gagattaaaa tcaataaaaa tgttgttgca ccagtgacta tgaataacga tgaagctgtg
     2161 gattttgcta gtgaggttgc aaaagaatta tttggcgaaa aaaattgtga atttaattat
     2221 cgtcctttaa tggcaagtga ggattttggg tttttttgcg aaatgaaaaa atgtgcctat
     2281 gcttttttag aaaatgaaaa cgacatttat ttacataatt ctagttatgt ttttaatgat
     2341 aaacttttag ctagggctgc aagttattat gcgaagctag ctttaaaata cttaaaataa
     2401 aaactaatct agaatttcaa gcgcaatttc ttcctttaaa cctttgattt gaatttcttt
     2461 gagttttaga tttgaaggaa ggtttgctaa aagctcttta ttgtttttta cttggttttt
     2521 tgcacttatg gagagtaaaa ttcccctgta agctttagca aaatgactga tgactttacc
     2581 attttttaca aatttatagg tataaaattt cttttttggg gtatagaatt tatcataaaa
     2641 tcctgctcta agatcaagta tttcttcatt ttccaagtat tcatctaagg ctttactaaa
     2701 atgttcttta taaaatttct ctatggtaaa atttcctatt ttagcccctt gcttgaattt
     2761 ataaaagggt agggtatcat tagctcttac aacgccaaaa agattagaaa at
//
LOCUS       DAPIWV010000144         2735 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.146, whole genome shotgun sequence.
ACCESSION   DAPIWV010000144 DAPIWV010000000
VERSION     DAPIWV010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.146"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            72..2057
                     /locus_tag="RJ272_001667"
     CDS             72..2057
                     /locus_tag="RJ272_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HDV7382712.1"
                     /translation="MLKQSIETYKKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKA
                     ITMERKFVNLRRMYKDEAPLTQINALIDSLYYDLDEVAPILQNGYRLKAEASDINYDK
                     AKAEKSSLEANAKREADAEALIAQMMGVDKKDLAQSSLTTQAPIPVNNDTSKLIDDNA
                     STDLQAAAAMDVRLQFILDNISTKFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVE
                     ILVNKFTKAGNDQKIQQAIRTLIRQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSE
                     LSSLQISGFNDETKGKDYAKVSNDIKLALDEILKNYDGFSTSMVDDLQGIYLDIFEAS
                     GMENKIGAVDSGLKLKIESLFSKGMALIKASADKKELEATFNDLEQLIASSVDKIQDS
                     TPYSLFIWALGIILREGLEALIIIVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITA
                     FGVSWLFKENAGQSRELIEGITMLIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAI
                     SNNSAKTLWITVFLAVYREGAETVLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLY
                     FLLKAGAIRIPVKQFFYITSYIIFYMVFVFTGKGIAELIEGKVIIPGLIPMNFEPILW
                     LGIYPYYETLIPQFIVLIMLIIGILITKQISKKGVKS"
     gene            2054..2593
                     /locus_tag="RJ272_001668"
     CDS             2054..2593
                     /locus_tag="RJ272_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDV7382713.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
BASE COUNT          957 a          412 c          490 g          876 t
ORIGIN      
        1 gtattttttt atcaagctca gcttttgcta gggtagatga ttatattaat gaagcaaatc
       61 ttatcaaaga tatgctaaaa caaagcatag aaacttataa aaagggcgat aatctaggcg
      121 ccaaaaagct tagcgaagat gcgtattttc aacattttga aaatatggaa ggcccaatag
      181 gaagaaacat aggaagaaaa gctatcacta tggaacgtaa atttgtaaat ttgcgtcgca
      241 tgtataaaga tgaagctcct ttaacacaaa ttaatgcttt aattgatagt ctttattatg
      301 atcttgatga agtagctccg attttacaaa atggatatcg tttaaaagca gaagcaagcg
      361 atataaacta tgataaggct aaagctgaaa aatcaagcct agaagccaat gccaaacgcg
      421 aagctgatgc agaagcttta atcgcacaaa tgatgggtgt agataaaaaa gatttagcac
      481 aaagctcttt aaccacccaa gctcctatac ctgtaaataa tgatacaagc aaacttatag
      541 atgataatgc aagcactgat ttacaagctg ccgctgcaat ggacgtaaga ttgcaattta
      601 tactagataa tatctctacc aaattttcac aggcagctaa tgcttttaaa gaaaaaaact
      661 accaaactag taaagatttt ttaaatgatg ccttatttag tgattatcgc aataccaaag
      721 tagaaatttt agtaaataaa tttaccaaag caggaaacga tcaaaaaatt caacaagcca
      781 tacgcaccct tatacgccaa atcaacgatg caaaaataga tgaaaaaggc ttaagagatg
      841 gcttagataa catagaagaa caaatttttg atgttttctt acaaattcca aattcagaac
      901 tttcaagttt gcaaatttca ggctttaatg atgaaacaaa aggcaaagat tatgccaaag
      961 tttctaatga tatcaaactt gctttagatg aaattttaaa aaattatgat ggctttagca
     1021 cttctatggt agatgattta caaggaattt atctagatat ttttgaagca agcggtatgg
     1081 aaaataaaat cggtgctgta gatagtggct taaaacttaa aatagaaagt ttattttcca
     1141 aaggcatggc actgattaaa gcaagtgcag ataaaaaaga gcttgaagct acttttaatg
     1201 acttagaaca actcatagcc agcagcgtgg ataaaattca agattctact ccttattcgc
     1261 tgtttatatg ggctttaggt attattttgc gtgaaggctt ggaagctttg attatcattg
     1321 tagccattgt ttcttatctt gtgcaaagtg gcaacaaaaa tcgtctaaat atcgcctata
     1381 gtgctctttt tacaggagtg attttaagtt ttattaccgc ttttggagtt tcttggctat
     1441 ttaaagaaaa tgcaggtcaa agtagagagc ttatagaagg tattaccatg cttatagccg
     1501 tattactact cttttatgtg ggcttttggc tactttcaaa cgcacaaaat aaaaaatgga
     1561 caagctttat caaacaaggt gctatagatg ctatatcaaa taatagcgca aaaacccttt
     1621 ggattaccgt atttttagct gtttatagag aaggtgcaga aactgtgctt ttttatcaag
     1681 ccttgctttt tgatgctaaa acaagcactg attttggtgc tgtttttggc ggacttggac
     1741 ttggaatttt aatacttatt gttttatatt ttcttttaaa agcaggagcc attcgcatac
     1801 ctgtaaaaca atttttctat atcacttctt acattatttt ttacatggtt tttgttttta
     1861 caggcaaagg catagccgaa ctcatagaag gaaaagtcat cattcctggt cttataccta
     1921 tgaattttga accgatttta tggcttggaa tttatcctta ctatgaaact ttaatccctc
     1981 aatttatagt tttaattatg ctaattattg gcattttaat aacaaaacaa atttcaaaaa
     2041 aaggagtaaa atcatgataa aaaaagtttt atcagtagtt gctgcagctg cggttattag
     2101 tacaaattta tttgcgggcg aagtgccgat cggcgatcca aaagaactta atggcatgga
     2161 aatagccgct gtttatttac aacctattga aatggagcca agaggtattg atttagctgc
     2221 atctttagca gatattcacc tagaagctga cattcacgca cttaaaaaca atccaaatgg
     2281 ttttccagaa ggtttttgga tgccttattt aactatagct tatgaactta aaaataccga
     2341 cacaggtgca attaaacgtg gaactttgat gcctatggtg gctgatgatg gtcctcacta
     2401 tggtgcaaat attgctatgg aaaaagataa aaaaggtggc tttggcgtag gaaattatga
     2461 acttactttt tatatctcaa atccagaaaa acaaggtttt ggacgccatg ttgatgaaga
     2521 aacaggtgtg ggtaagtggt ttgaaccttt taaagtagat tataaattca aatacacagg
     2581 cacgccaaaa taattttacg ctcggatttt ccgagtgttt gaatattttt atttttattt
     2641 gaaaaattaa aataaaaatg tttaaagagt aaattatgag tatatatttt gtgcattttc
     2701 ttatcagtgt tttaccgcta agtattttaa tggcc
//
LOCUS       DAPIWV010000145         2711 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.147, whole genome shotgun sequence.
ACCESSION   DAPIWV010000145 DAPIWV010000000
VERSION     DAPIWV010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.147"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..596)
                     /locus_tag="RJ272_001669"
     CDS             complement(<1..596)
                     /locus_tag="RJ272_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HDV7382714.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVSVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYLIATLSNPFFIDIKKDLESN"
     gene            complement(596..2404)
                     /gene="typA"
                     /locus_tag="RJ272_001670"
     CDS             complement(596..2404)
                     /gene="typA"
                     /locus_tag="RJ272_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDV7382715.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGSDENPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2539..>2711
                     /locus_tag="RJ272_001671"
     CDS             2539..>2711
                     /locus_tag="RJ272_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382716.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENE"
BASE COUNT          850 a          512 c          394 g          955 t
ORIGIN      
        1 aaattgcttt ctaaatcttt ttttatatct ataaagaaag gattgcttaa agtagcaata
       61 agataatgat tttctttaga aaaaacatga tttaaagtga aatttttatc ttgaagtttg
      121 atataaattt gctcttcatt ttcaaagcta ggatttttgt ttgcacttaa aatttcgagc
      181 aaaattccgc aaaaaaagcg tttattttcg tccaaaaact gaatatcata aattttaaaa
      241 tccttaaatt caaagcagtt ttgactttta aattctttca aatcctttgt aagtcctaat
      301 tttaaaaagt ctttttggct taaactttgc tttttaaatt ttgccccaaa acgacgcaaa
      361 aataaattta aagcattaat ttgtaattct ttttgtgcga gttttagttt tttagctgta
      421 aaacgaaaga aaaaaacact tacaaaaaca gctaaaatta ctgcgattaa ggcatctctt
      481 ataaaaacaa aggctaaaaa acctacaagt aaggcttcga taatgcttag gaattttaag
      541 attcctaagc gtttaagtat ataaagtcta ttattttcta agctttttaa atccattaag
      601 attttgcttt ttccattctt tttctttgag ttgggtcaag atagcgtttg cgaacacgca
      661 catttacagg tgtaacttct acaagttcat cttcttctat ccactctaaa gctctttcaa
      721 gacttaattt tctaggtggc acaagtttga ttgcatcatc gcttccactt gctcttacat
      781 tggtaagatt ctttcctttg ataggattaa catctaaatc atttggacga gagtgctcac
      841 ctataatcat accggtataa actttagttt gaggctctat gaaaagtact ccacgctctt
      901 gaaggttaaa caaagaatac cctaaagcca cgccattttc catagaaatt aacgctccat
      961 tattacgctt ttcaaccgca ccgctaaaag gacggaattc taaaaagcta tgattcatca
     1021 cgccttcgcc tttggtatcg gttaaaaact gacttctaaa acctataagt ccgcgtgctg
     1081 gaatttcaaa ctcaagcctt gtttgtccat cgcccgttgg tgccatggtt ttcatttcag
     1141 cttttctttt gccaagtttt tctattaccg caccgctaaa ttcttcaggc acatcgataa
     1201 ctaaatgttc aaaaggttct gttttaactc catcttcaac ttttacgata acttcaggtc
     1261 ttcccatgca aaactcaaaa ccttcacgac gcatattttc agctaaaata gtgatttgaa
     1321 gttcgcccct accgcttact ttaaatttac cttcgcctgt gctttcgtat ttcatagcaa
     1381 tattagtttt catttcagct tctaagcgtt cagcgatttt atttgaagtt acatgttttc
     1441 cttcagttcc tgctaatggt ccatcattta cagaaaatac tatgcttaaa gtcggctctt
     1501 caatgtgtaa aggatcaagt ggcataggat tgtttggatc tacaacgcta tcacccacat
     1561 ctaaagcttc aaaacctgct atagctacga tatctccact tcctgcttct tcgatgtcca
     1621 ttttttctaa gcccataaag ccaatgagtt ttgaaattct accatttacc ttggtaccat
     1681 cagcttttgc aagcattacg ctttggtttt tcttcacaac cccattgaaa attctagcaa
     1741 tgcctatttt acctacgaaa ttatcatacc ccaaagtgaa aacttgaagc tgcaaaggat
     1801 tttcatcact accacttgga gctggaacgc gttcaagtat ggttttaaaa agtggctcca
     1861 tattatcact ttcatcgttt agatcaagct tagcataacc attttttgct gcagcataaa
     1921 ctatagcaaa gtcaagttgc tcatcgtttg catctagggc tacaaaaaga tcaaaaattt
     1981 cattgatcac tctttcagga tcagcagctg gtttgtctat tttgttgatt acaactatag
     2041 gtttaagccc taaagataaa gcttttttaa ccacgaattt agtttgcggc ataacgcctt
     2101 cttgagcatc tactaaaagc aaaactccat caatcatttt taaaacgcgt tctacttctc
     2161 cgccaaaatc agcatgccct ggagtatcta tgatgttgat ttttgtacct ttgtaattga
     2221 tcgctgtgtt ttttgaaagt atggtaatgc cacgttcttt ttctatatcg ttgctatcca
     2281 taacgcgttc tgaaatttgt tctctttcgc taaaggtgcc tgattgtttt aataattcat
     2341 ctaccatagt ggttttacca tggtcaacgt gagctataac tgctatattt ctaatgtttt
     2401 ccaaattttc ttctccaaag ctaaattttt aaaagcttag attatacaaa aatttaactt
     2461 aaactacaaa gcatcaaaac ttggaacact tcttgcttta aagacttgtg aaattaaaat
     2521 tttaaaaagg aagttaaaat gtcaaaacca ttaaatgaag agatttttat tgaatttaaa
     2581 agcgatttag ctgagagaaa aaatgaagtt ttacttcaag ttttagaact tttagaaact
     2641 tttagatcag ataaaaatga aaaaatggca agaatttcaa gtgagcttac agaaatttta
     2701 gaaaatgaag a
//
LOCUS       DAPIWV010000146         2644 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.148, whole genome shotgun sequence.
ACCESSION   DAPIWV010000146 DAPIWV010000000
VERSION     DAPIWV010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.148"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            35..1459
                     /locus_tag="RJ272_001672"
     CDS             35..1459
                     /locus_tag="RJ272_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDV7382717.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            1516..1986
                     /locus_tag="RJ272_001673"
     CDS             1516..1986
                     /locus_tag="RJ272_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HDV7382718.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(1987..2643)
                     /locus_tag="RJ272_001674"
     CDS             complement(1987..2643)
                     /locus_tag="RJ272_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7382719.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTVFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
BASE COUNT          982 a          403 c          405 g          854 t
ORIGIN      
        1 taattgataa aatttattat tttaggagaa aacaatgaaa aaattgacta acgattttgg
       61 aaacattata gccgataacc aaaattcatt aagtgcaggc gcaaaaggac ctttgcttat
      121 gcaagattat cttttgcttg aaaaacttgc tcatcaaaat agagaaagaa ttccagaaag
      181 aaccgttcat gccaagggaa gtggggctta tggagaaata aaaatcaccg ctgatttatc
      241 tgcttatact aaggcaaaaa tatttcaaaa aggagaaata actcctcttt tcctacgctt
      301 ttctactgtt gcaggtgaag caggtgcagc agatgctgag cgtgatgtac gtggatttgc
      361 cattaaattt tacaccaaag aaggaaactg ggatttagta ggaaataata ctccaacttt
      421 ttttatccgt gatgcgtata aatttcctga tttcattcat actcaaaaaa gagatccaag
      481 aactcatcta agaagtaata atgctgcttg ggatttttgg agtttatgtc ctgaaagttt
      541 acatcaagta accattctta tgagcgatag aggaattcct gcaagttatc gtcatatgca
      601 tggatttgga agccatactt atagttttat taatgataaa aatgaaagat tttgggtgaa
      661 attccatttt aaaacccaac aagggattaa aaatcttacc aaccaagaag ctgccgagct
      721 tatagcaaaa gatagagaaa gtcatcaaag agatctctat aatgctatag aaaataaaga
      781 ttttccaaaa tggaaagttc aagttcaaat tcttgctgaa aaagatatag aaaaacttgg
      841 atttaatcct tttgatttaa caaaaatttg gcctcatagt cttgtgcctt tgatggatat
      901 aggcgaaatg attctaaaca aaaatcctca aaattatttt aatgaagttg aacaagctgc
      961 ctttagtcca agcaatatcg ttcctggaat tggctttagc cctgataaaa tgttgcaagc
     1021 tagaattttt tcatatcctg atgcacaaag atatagaata ggaactaatt atcatctttt
     1081 gcccgtaaat cgtgcaaaaa gcgaagtgaa tacttacaat gtcgctggtg ctatgaattt
     1141 tgatagttat aaaaatgatg cagcttatta tgaaccaaac agctatgata atagcccaaa
     1201 agaagacaaa agctatcttg aacctgattt agtcttagaa ggcgtagcac aaagatatgc
     1261 tccactagat aatgactttt atactcaacc aagagcttta tttaatctta tgaatgatga
     1321 tcaaaaaact caactttttc ataatatcgc cgcttctatg gagggagttg atgaaaaaat
     1381 tatcactaga gctttagaac attttgaaaa aatttcacct gattatgcaa aaggaattaa
     1441 aaaagcttta gaaaaataat ttttacttgc cacttttggt ggcaaactaa agattataat
     1501 aattaaggaa aaacaatgac aactcttagt ttagaagaag aaaaaagatt tgaagagctt
     1561 tgcaaaatgg cttttaattt tgcaagaaat aatgaatgtg aaaatcttaa aatcatgata
     1621 gaagcaggtt taaatgtaaa tttaaaaact cataaaggcg atagcttgct tatgcttgca
     1681 gcttataata attcttatga aagcgctaaa atgcttttag aaaaaggtgc aaaagtagat
     1741 gaaaaaaacg atcgtggaca aaccccatta gcgggagttt gttttaaagg atacttacct
     1801 atgtgtgaac ttttagttaa atatggagca aatattgatg aaaacaatgg tttaggaatg
     1861 acaccttata cttttgctat tatgtttgga cgcaaagatg tggcagaatt tttactcaaa
     1921 aaatctaaaa ataatttttt aaagaaaata agcctaaaaa tactaaaatt tatcaaaaaa
     1981 ttttagttat tttttaaatt tcttcagata cctatagaca ctaggttctg aaatttttaa
     2041 aaattttgct acgataggaa ccgccccttt tatattaaaa ataccttttt catatagctt
     2101 ttcagcaatt tcttcttttt gagtaatact taattgataa tcagaattta aataactaga
     2161 atctacgctt tgaactaaaa tatcctctat cgagtgactt aatgtttcta tacttgaatc
     2221 attttgagaa aaactaatat ttcctaaaat atcacccata tctccaattt tttctaaatc
     2281 aatcatcttg catattaaat ctctcataat gctagtatca tgattgatac acaaaatacc
     2341 tactaatttg tcatgatttt taataaaaaa agtagatcct ctaattaatt ttgattttcc
     2401 aacaagagcc ttataatcac ataaaaaatc tttttctaaa tattttttat tttgcataag
     2461 ctcacttgca aaaacagtca agggagaatc taaacttctc ccactaatgt gattgttagc
     2521 aattgctgca atataggccc catcttcagt aattacatgg aaaactatct catattgctc
     2581 acctaaaact tctcctaaaa aatatgtcaa ctttataaat tgttgttttt gtccctcatc
     2641 cata
//
LOCUS       DAPIWV010000147         2570 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.149, whole genome shotgun sequence.
ACCESSION   DAPIWV010000147 DAPIWV010000000
VERSION     DAPIWV010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.149"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            310..528
                     /locus_tag="RJ272_001675"
     CDS             310..528
                     /locus_tag="RJ272_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDV7382720.1"
                     /translation="MLLNIIIEKDQDGYFARILELEGCVSQGNTYEEALVNIKEAGEL
                     YLESLANEEKRIIENKTTSIIPMVLANA"
     gene            556..693
                     /locus_tag="RJ272_001676"
     CDS             556..693
                     /locus_tag="RJ272_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001874830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDV7382721.1"
                     /translation="MDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAK
                     D"
     gene            697..2490
                     /locus_tag="RJ272_001677"
     CDS             697..2490
                     /locus_tag="RJ272_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7382722.1"
                     /translation="MPKRNTIDTITLGIFSDEDVSIICEDTIKLERGSVAVLSGNSEV
                     GKSFLALKVCANAINDGLKPFFWSVEDKNKAILGRIKNIESFYSFNTAELEFSNELPK
                     INKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKS
                     NNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNN
                     INAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVT
                     MNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANDSSYVISLKNSLLTQTHRN
                     ILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTE
                     ISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYI
                     KKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYK
                     ESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFHNKYKNENDLFFIYESN
                     NRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD"
BASE COUNT         1007 a          292 c          402 g          869 t
ORIGIN      
        1 ttaagtcaat tgttttttta aagtccctat tttccatatg ttattttcgt aaaaatgtca
       61 aaaatcatta catttaagtc aaaaatcatt acatttaagt caattttatt tgaaaataag
      121 aggagcattt agcaattttt gttgacttta atgtaagtac atattacatt taagtcaatt
      181 ttatttgaaa aaattctaaa attgctgcct attgacatag atgtgatact ttgatataat
      241 ttatttcgaa gattaaaata tttgttacat ttaagtcaat cttatcattt tttaatacaa
      301 ggaattaaga tgctattaaa tattattatt gaaaaagatc aggatggata ttttgcacgc
      361 attttagagc ttgaaggttg tgtttcgcag ggaaatactt atgaagaagc tttagtcaat
      421 ataaaagaag caggagagct ttatttagaa agtcttgcaa atgaagaaaa aaggattatt
      481 gaaaataaaa caacttcaat tattccaatg gttttagcaa atgcctgaat tgcctagaat
      541 gactgcaaat tttcgattga taggcaaaaa ggcagccata gaatctataa aaaaggactt
      601 tatagaatgg ttattcctca tcatagtgga gaaatattgc accctaaaat cataaaacaa
      661 ctatttgaga tcatagaagt agcaaaggat taaaaaatgc caaaaagaaa tactattgat
      721 actattacac tcggaatttt tagtgatgaa gatgtttcta taatctgcga agatacaatt
      781 aaactggaaa ggggctctgt agctgtatta agtggcaata gtgaagtagg caagtctttt
      841 ttagctttaa aggtatgtgc taatgctatt aatgatggct taaaaccttt tttttggagt
      901 gtagaagata aaaataaagc aattttagga cgcataaaaa atattgaaag tttttattct
      961 tttaatactg cggaacttga attttcgaat gaacttccaa aaatcaataa agaacctata
     1021 aattgtttaa aagaagaact taatgagtta gcagattgcg atttaattgt tcttgatacc
     1081 tttagtgcat ttttctcaac attaggcttt aaagatcaaa acaatcaaaa cgatgtgcaa
     1141 aatttcttta atattctaac agatatagca aaatcaaata atcaagctat cttattactt
     1201 catcacttag acaaaaaagg cgaaagtctt atgggtagct ctgttattat caatgctcct
     1261 agacttgttt ataaactttc gttcgaaaag ggagaagata aaaattctac cacctatcgc
     1321 ttgcttgagg tgctaaagga taataataat atcaatgctg gagaatttca aaaaacgatt
     1381 aaagtattgc aaaattctag tattgatgag ccttcaattg taaatcttag agctaacagc
     1441 attgattcta atactttaga gattatcaat aaaaaagata tttctgctgt aagtgttaat
     1501 gaattagcaa aaggctatgt aacaatgaat gaaaatagag gtgtttttta tttaagctca
     1561 cgaaagctta cagacactaa tttttataaa gtatttaaag aaaatgataa taaaatagat
     1621 tttaaaatga caggtgcgaa tgactcatca tatgtcataa gtttaaagaa ttctttgctt
     1681 acgcaaacgc ataggaatat tttagatgct ttatttttat atatcaaaaa aaatgtagat
     1741 acaagtgtta ttaaaaaata tcaagaaaat ttttgggata tggaagtaag attagagcct
     1801 tataaattct tgaaacaata tcttaataaa aattctaata attactcttg gttgaaacaa
     1861 aaatttacag aaatctctcg ttttgcgtat gatttggctt tcactcaaaa tgtagaagat
     1921 aaagataaaa aaacaatcac tcaaagagat aaaggtattt taatgtttga ctctgtagag
     1981 cgtatcacaa aagaaaatgg aacaattgta tctgtattcg tgctaacagt tcgtagagaa
     2041 tatattaaaa aactcgaaac agaatctacc ctttcttatg atgatgattt atccaaaatt
     2101 cttattaatt taaattcttt ggtggcacaa gatttgatta gatttttaac aagttttcct
     2161 gataagaaaa ttcttagtta tagtgagttt tgtgaaatta aagcttatag attttataaa
     2221 gaaagttcta ttatttcgaa acaaaagaaa gagattgtta aattaaaaga taaacttata
     2281 gaatttggaa ttaatgttta tggcaaaggc gtagaatttg ctaattatga tgatgaattt
     2341 tttcataata agtataaaaa tgaaaatgat ttatttttca tctatgaaag caataataga
     2401 gtaaaaagat atattaagcg tagtgatcca atgaatcaat taaacaccaa aagcaataaa
     2461 tttcttttgc aaaaatcttt atttgattaa catttacaat caaggagtgt tgtatgaatg
     2521 aatgggaatt agaaagacaa agacaaataa gatagacaaa ttgagcgttt
//
LOCUS       DAPIWV010000148         2383 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.150, whole genome shotgun sequence.
ACCESSION   DAPIWV010000148 DAPIWV010000000
VERSION     DAPIWV010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.150"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            27..>2383
                     /locus_tag="RJ272_001678"
     CDS             27..>2383
                     /locus_tag="RJ272_001678"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024398.1,HMM:NF024914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7382723.1"
                     /translation="MLYIEAINSIEFKRINVILEKLDYVYWNTFNATPTHLYYPKERL
                     EYKDILSNVSYHNALESYRITQSLNYSKKLSVEISKIIEITSKNNIELYTRINDLEVQ
                     KAKLNKEKCQFEQDLKVCKEKLKQKDSELKRIENTLSYRIGNRIVKSKNIKDILILPY
                     NLFKEYRNFKLRQKNKNLLFQEKNKFKRNIEFRKNQIFECKIENLDLLKIACIMDEFT
                     YESFKYECDLLQLSLENWKNEIMHFKPSLLFIESAWQGKNSLWKLKISGFSIELQELI
                     GYCKENHIPTIFWNKEDPVHFNTFLPIACSVDFIFTTDIDCVSKYKFYAGHEDVYCLP
                     FAAQTKMYNPIEEFDRKDEFNFAGSYYLRYPQRQLDFDNLINAIKPYKNISIYDRNFN
                     NPHSHYTFPNCYKDMIIGNLPFNEIVKAYKGYKFGITINTVKQSQTMFARRAFELIAC
                     NTFVVSNFSRALRNFFGDLVISSDNVNELKDKLKLACEDEMYCKKIKLNALRKVMKEH
                     TYTDRLKFIASVVYKKQFEYKYKFYLLVYVNSQEEYIKALDIFNFQKENKEACLLIYS
                     DKELDFQNNDKYIHISELEELYEYVKNDKQAYFGMLDIRDFYGENYLLDLVLTLKYSK
                     FNAFGKYSFYEFKDSVISLENKDYEYKKVDKLFITSSFVKIEFLSKDMLSDFINGQFL
                     YQIEDMFAIDCFNYCKNGSILTKEQQEYVSSIDKMYSGINIKELNMTSKFKGVLKEDY
                     ETPDLIKMDAKFIYENIEKPLSSKIKFVLNENKFMIESKLSNETH"
BASE COUNT          985 a          216 c          346 g          836 t
ORIGIN      
        1 taaatactat aaaaaaatat agaccattgt tatatataga agctatcaac agtatagaat
       61 ttaaaagaat taatgttata ttagaaaagt tagattatgt ttattggaat acttttaatg
      121 ctacgccgac acatttatac tatcctaaag aacgattaga atataaagat atattatcca
      181 atgtttctta tcacaatgct ttggaatcat atagaattac tcaatcatta aattatagta
      241 aaaaattatc tgttgaaatt tctaaaatta tcgaaattac ttctaagaat aatattgaat
      301 tatacactag aataaatgat ttagaagtgc aaaaagctaa attaaataaa gagaaatgtc
      361 aatttgaaca agatttgaag gtttgcaaag agaagttaaa acaaaaagat agcgaattga
      421 aaagaataga aaatacttta tcatatagaa taggaaatcg tatagtcaaa tctaaaaata
      481 ttaaagatat tctaatcctt ccatataatt tatttaaaga atataggaat tttaaactaa
      541 gacagaaaaa taaaaatctg ttatttcaag aaaaaaataa gtttaaaaga aatatagagt
      601 ttagaaaaaa tcaaattttt gaatgtaaaa ttgaaaactt agatttattg aaaattgcat
      661 gtataatgga tgaatttaca tatgaatcct ttaaatatga atgtgattta ttacaattaa
      721 gtctagaaaa ttggaaaaat gaaattatgc actttaaacc cagtttacta tttatagagt
      781 cagcgtggca aggaaagaat tctttgtgga aattaaagat ttcaggattt tccatagagc
      841 ttcaagagtt gattggatat tgcaaggaaa atcatattcc tactatattt tggaacaaag
      901 aagatcctgt acattttaat acttttttac caatagcttg ttctgttgat tttattttta
      961 ctacagatat cgactgtgtc tcaaagtata aattttatgc cggacatgaa gatgtgtatt
     1021 gtttaccttt tgcagctcaa acaaaaatgt ataatcctat agaagaattt gatcgcaaag
     1081 atgaatttaa tttcgctgga tcatattatt tgcgatatcc tcaaagacaa ttggactttg
     1141 acaatcttat aaatgcgata aaaccttata aaaatataag tatttatgat agaaatttta
     1201 ataatcctca ttctcattat acttttccta attgttataa agatatgatt ataggaaatt
     1261 taccttttaa tgagattgta aaagcatata agggttataa atttgggata acaataaata
     1321 ctgttaagca atctcaaaca atgtttgcta gaagagcttt tgaacttata gcatgtaata
     1381 catttgttgt aagtaatttt tctagagctt taagaaattt tttcggagat ttagtgatat
     1441 catctgacaa tgtaaatgag ttaaaagata aattaaagtt agcatgtgaa gatgaaatgt
     1501 attgcaagaa aataaaatta aatgctttaa gaaaagtaat gaaagagcat acatatacag
     1561 atagattaaa atttatagct tctgttgttt ataaaaaaca atttgaatat aagtacaaat
     1621 tttatttatt ggtgtatgta aattcgcaag aagaatatat taaagcattg gatattttta
     1681 atttccaaaa agaaaacaaa gaagcttgtt tgttgattta tagtgataaa gaattggatt
     1741 ttcaaaataa tgataaatat atacatattt cagaattaga agaattatat gaatatgtga
     1801 aaaatgacaa acaagcatat tttgggatgt tggatattag agatttttat ggtgaaaatt
     1861 atttgctaga tttggtttta actttaaaat actctaaatt taatgctttt ggaaaatata
     1921 gtttttatga atttaaagat agtgtaataa gtttggaaaa taaagattat gaatataaaa
     1981 aagtagataa actttttatt acttcatctt ttgtaaaaat agaatttctt agtaaagata
     2041 tgttatctga ttttatcaat gggcaatttt tatatcaaat cgaagatatg tttgctattg
     2101 attgttttaa ttattgtaaa aatggttcta ttcttacgaa agaacagcaa gaatatgtat
     2161 ctagtataga taaaatgtat tctgggataa acattaaaga attaaatatg acatcaaaat
     2221 tcaaaggggt attgaaagag gattatgaaa ctcctgattt gataaaaatg gatgctaaat
     2281 ttatatatga aaatatagaa aaaccgttga gttctaaaat taaatttgta ttaaatgaaa
     2341 acaaatttat gatagagtca aagctttcta atgaaacgca taa
//
LOCUS       DAPIWV010000149         2340 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.151, whole genome shotgun sequence.
ACCESSION   DAPIWV010000149 DAPIWV010000000
VERSION     DAPIWV010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.151"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            18..824
                     /locus_tag="RJ272_001679"
     CDS             18..824
                     /locus_tag="RJ272_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HDV7382724.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENVQVKNLSSLYEGENNSLL
                     FQKELFVAQNNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(821..2197)
                     /locus_tag="RJ272_001680"
     CDS             complement(821..2197)
                     /locus_tag="RJ272_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7382725.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT          842 a          356 c          353 g          789 t
ORIGIN      
        1 taaggaatat aagaataatg aggggtattt tttatataat agcattgttt tctttactca
       61 atggcgatga acttacagag gctttagcaa aaaataataa tcaaaattct tgggagcact
      121 ttgattataa aaataccaaa gaagctccaa aaattcaaga agagaatgtg gattttaaaa
      181 gcacttttga tagcttactt tcaaaaactt tagaaaataa taatggtata gataaaacag
      241 atgggaattt agattttcaa aatgaaaatg tgcaggttaa aaatttaagt tctctttatg
      301 agggggagaa taattctttg ctttttcaaa aagaactttt tgtggctcaa aataattata
      361 attactcagg gggtttaatc aatcgttatg aaaaagatga ttttttattt ggagttaatg
      421 gttttattga taaacaaaag gaacaaaaag atactaaaag ctttggtaca gagtttggtt
      481 atagtaaatt tataaaggct tatagtaatt attatatacc caatgaagca gaaaaaaatt
      541 tacagcttgg aatgagtttt gtaattccaa cttataccgc ttttgctttt gatataagta
      601 aggataatga taaaactaat tatcaagtat cttactctcc ttatagtgta tttagtttaa
      661 atttattgcg tcgtgattat agtgcaagag agactgttga tgatactgtt gttcaagttg
      721 gatttagttt taatttcaat gaaagttttt taaagcaatt tagaaaaaaa gataatactt
      781 tagaggaggt taatcgatat gatttcctcc aaagaactca ttagttcatt ccagcattat
      841 gaaatttttc tggattgtcc atagcgtagc ggaatttttc ccaatcaatt tgtttatccc
      901 agatagcaac gattaaagct gctactgaat ttccacaaag atttccaacc gccctcattt
      961 cagacataaa tttgtcaaca cctaaaagaa cacctatagc agctactggt agaacttgcg
     1021 ctaaggttgc atttgcttct gaaatttcca tatttcctag agctgcaagc gtacttccaa
     1081 gcactataaa acctgatcca gttacaccta ctgcaccttt tgaggctatc attaatacta
     1141 ttaaaatact gatttcgtgt gctaaactta aatttacatt gaaagcttgt gctagaaaga
     1201 ttaagctcat agctagataa atatttgtac aatcaagatt aaaactatat cccgttggta
     1261 aaacaagtcc gactgttgct ttagaaagtc ctgctttttc tagttttctc attaaaggag
     1321 caagtgcaga ctcgcttgaa ctggttgcaa aaacgatcaa tacttctctt gagataaatc
     1381 tcataaattt gaagatattt acttttgcaa aataacaaat cagacctaag attccaaata
     1441 taaaaacaag acatgaaatc agcattacta aaagtaaata tgctaagttg atcaaagagc
     1501 caattccgta ttgagctatg agtacagcca ttgctgaaaa ggcggcaata ggactaaaat
     1561 acataatgat ttgtagaatt ttaaaaacaa aattttgtac cacttcaaaa actctttgaa
     1621 ttgcctgttt gtcttctatt ctcattaaag aaataatcaa agcagtaatt atagcaataa
     1681 ctaaaacttg tatggttttt ccttctgtaa aaggtgtgat aatatcagta ggcatagcat
     1741 cttttaaaat atgcataatc tcagagctcg cacttacttc tgtggtttga gaaatgtatt
     1801 tttgaacgct ttttgtatca agttgacttg gatcaagatt cattccatgg cctggttgca
     1861 taacatttgc cataaaaata cctatagcaa gtgctaaagt acttacaact tcaaagtaaa
     1921 taaccgcttt agcaccaatg ctacctactt tttttaaact ttcaagacta atgatgccca
     1981 aaaccaaagt aacaaaaata atagggccta taagaacctt taaagcacct ataaaataat
     2041 caactcctgg tttgctagca atggctaatt ctttatctgt atagccaagt acaatacctg
     2101 taataatgcc tataatcacc caaaatccaa gacttttgat aatacgttta tataaaggcg
     2161 gttttctttc agctaaagtt tgacttaaag tttccaagtt tattcactcc ttttgatctt
     2221 tgtaaaatat aattttaaca atgtgtatcg taaattttaa caaaaaaaca aatctagaaa
     2281 tactttcttt tatatgatat gataattttt tatataaacg ttacaaaatt tctcattatt
//
LOCUS       DAPIWV010000150         2213 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.152, whole genome shotgun sequence.
ACCESSION   DAPIWV010000150 DAPIWV010000000
VERSION     DAPIWV010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.152"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            35..298
                     /gene="rpsT"
                     /locus_tag="RJ272_001681"
     CDS             35..298
                     /gene="rpsT"
                     /locus_tag="RJ272_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDV7382726.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            317..1384
                     /gene="prfA"
                     /locus_tag="RJ272_001682"
     CDS             317..1384
                     /gene="prfA"
                     /locus_tag="RJ272_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDV7382727.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(1398..2153)
                     /locus_tag="RJ272_001683"
     CDS             complement(1398..2153)
                     /locus_tag="RJ272_001683"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HDV7382728.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVIHVGASGNPHKFLHKH"
BASE COUNT          810 a          370 c          347 g          686 t
ORIGIN      
        1 atttagtctt taatttcaaa aaaggaaaat ataaatggca aaccataaat ctgctgaaaa
       61 aagagcaaga caaactatta aaaaaacaga aagaaataga ttctatagaa caagacttaa
      121 aaatataact aaagccgtaa gagaagctgc agcaaatgga gataaaaatg ctgctaatga
      181 agctttaaaa gtagctaata aaagcattca tgctatggta agtcgcggtt tcattaaaaa
      241 acaaactgct tctcgccgtg taagccgctt agccctttta gtaaataaaa tcgcataatt
      301 ttctatatag tttttaatgt tagctagcaa actagatcct tttttaaaac gctttgaaga
      361 gttaaattct cttcttagca gttctgatat aatcaacgat atcagtaaaa tgactacact
      421 ctctaaagaa caaaaaaatt tagaacctat cgttttaaaa gctaaagagt atttaaaaac
      481 tttagacaat atagaagaaa ataaagcttt gctaaacgat ccagaacttg gggaacttgc
      541 gaaagaagaa ctaaaaactt tagaagaatt aaaaccaaag cttgaagaag agattaaaat
      601 tttacttctt cctaaggatc ccaatgatga aagaaatatt tttcttgaaa ttcgcgcagg
      661 cgcaggtggc gatgaggcat ctttatttgt aggagatctt gtaaaagctt atgcaagata
      721 tgctgaaaat cgtggctata aacttgagat tgtaagttct agtgaaggaa gtgtaggtgg
      781 atttaaagaa atcatcatgc ttgttaaagg aacaggagct tattcaagac ttaaatatga
      841 aggtggaacg caccgtgttc aaagagttcc tcaaacagaa tcccaaggac gcgtgcatac
      901 ttctgctatc accgtggcag taatgccaga agttgatgat atagaaatcg aaatcaatcc
      961 aaacgatctt aaagttgatg ttatgcgatc ttcaggacat ggtggacaaa gtgtaaatac
     1021 tactgattca gctgttcgta tcactcatat ccctacaggt atagttgtag tcaatcaaga
     1081 tggaaaaagc caacacaaaa ataaagaaag tgcgatgaaa gtcctaaaag caaggcttta
     1141 tgaaatgcaa gagagtgaaa gactggcaaa agaaagtgaa gcaagaaaat cacaagtagg
     1201 aagcggagat agaagtgaac gcattcgcac ttacaatttt ccacaaaatc gtatcagcga
     1261 tcatagaata aatcttactt tatatcgctt agatgccatt atgcaagatg ggctttttga
     1321 tgaaatcata gaacctttaa tcactcatca tcaagcccaa gctttacaag aacaaaattt
     1381 ataagatttt atataaatta atgcttatgt aggaatttat gtggatttcc actagcacct
     1441 acatgtataa catttccatt ttctatatca taagcttggc caaaaccttt tacaaagcgt
     1501 ccttttttaa attcaagctt tactagatga aaatcaagca tcttgcgtat agttttaatg
     1561 cctccttctc ctccggtttg tttttcaaac tcatcataaa tttgatcaaa tctttcacct
     1621 ctctctaaaa agcttgcatt tactctatag cgcaatcttt tgcgaagtat cacagaagcg
     1681 gctttactct catcctctaa aaacattatt tctatattgt ttggatttac tttgatgttg
     1741 ttaaaatgtt cgcttacttc acttatataa atataatttc cccattgtgt gcttacaaaa
     1801 ggtgcatacg agcaaacaac ttctccattt gcatttaaag ttgccaaagc tacagaatta
     1861 aaacttagca taaattcatt taattctttt tctacgccac taaaattttg ctcgctcttt
     1921 gcactcatgc aaagggatat tatagcatct ttaatcgtgt tttcatcggc ttttttagga
     1981 aattccactc gtaaattttc tttatcattg taaacaagat ctaagccatt aaaatcaaca
     2041 ctttttagaa aaacatcttg tacttgctca ataccaccaa attttttaca aagatcgact
     2101 aaatttgatt tatgatgatc attcatatga gaaataatgc tttcaaaatt catttttatc
     2161 ctttcttgat tttaaaataa aatattaaaa aaaatggtat caattatcaa att
//
LOCUS       DAPIWV010000151         2197 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.153, whole genome shotgun sequence.
ACCESSION   DAPIWV010000151 DAPIWV010000000
VERSION     DAPIWV010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.153"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..255
                     /locus_tag="RJ272_001684"
     CDS             <1..255
                     /locus_tag="RJ272_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDV7382729.1"
                     /translation="KFPNLYIKLSTPDDFSQETPKEFIFELFAFLKENFSEDKFIFGS
                     NYPVSNLSPKQWIELIIQSKVFKDLDLIFYKNALSIYKGE"
     gene            256..573
                     /locus_tag="RJ272_001685"
     CDS             256..573
                     /locus_tag="RJ272_001685"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HDV7382730.1"
                     /translation="MQRYGQIIKIKKEKIQKYKNLHAKPYERVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDENTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            587..2026
                     /gene="aldA"
                     /locus_tag="RJ272_001686"
     CDS             587..2026
                     /gene="aldA"
                     /locus_tag="RJ272_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDV7382731.1"
                     /translation="MTTYLNYIDGEFISHNGDFIEVLNPATKEVISKVASASLEDAKR
                     AIEAAKKAQKSWETKPAIERANHLREIASLIRKNANFLTEILMQEQGKTRALASVEVN
                     FAADYMDYTAEWARRYEGEIIQSDRANEHIYLYKSAIGVIGGILPWNFPFFLIARKMA
                     PALLTGNTIVIKPSSETPNNAFEFAKLVSQSSLPKGVFNLVAGKGSVVGYELSSNENI
                     GMVSLTGSVEAGARVMEAAAKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICN
                     NGQVCNCAERAYVHTSIYDEFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQAGVDNALA
                     MLQRATAKGAVVECGGKITDTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIAKFDTL
                     DEAIDMANDCEYGLTSSIYTQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKS
                     GIGGADGKHGLEEYLATHVVYLQYNTNKQ"
BASE COUNT          798 a          256 c          447 g          696 t
ORIGIN      
        1 aaatttccaa atttatatat caagctttct actcctgatg atttttcaca agaaactcct
       61 aaggaattta tttttgaact ttttgctttt ttaaaagaaa attttagcga ggataagttt
      121 atatttggca gtaattatcc agtgtctaat ttgtctccaa agcaatggat tgagttgatt
      181 atacaaagta aggtttttaa agatttggac ttgatatttt ataaaaatgc tttatcaatt
      241 tataaaggag aatgaatgca aagatacggt caaatcataa agataaaaaa agagaagata
      301 caaaaatata aaaatcttca tgcaaagcct tatgaaaggg tttgtgagat gattaaagaa
      361 tgtaatatac aaaattattc catttatttg tttggagaat atttatttgc atattttgaa
      421 tatgtgggtg ctgattttga agcagatatg gctaagatgg caagagatga aaacacgcaa
      481 aaatggtgga aagtaacaga tccttgtcaa atatctttag gttatgcagg acaaaagtgg
      541 ctaaatatgg aagaagtgtt tcacttagac taaaaaagga gaaaaaatga caacttattt
      601 aaattatatt gatggagaat ttatctcaca taatggggat tttatcgaag ttttaaatcc
      661 agctactaaa gaagtaattt caaaagtagc gagtgcttct ttagaagatg ccaaaagagc
      721 gattgaagca gccaaaaaag cacaaaaatc ctgggagact aagccagcaa ttgagagagc
      781 aaatcattta agagaaatag ctagtttaat acgcaaaaat gctaatttct taacagaaat
      841 tttaatgcaa gagcaaggaa aaactagagc tttagccagc gtggaggtta attttgcagc
      901 agattatatg gattatacgg ccgaatgggc tagaagatat gaaggtgaaa tcatacaaag
      961 cgatagagct aatgagcata tatatttata taaaagtgct attggggtaa ttggtggaat
     1021 tttaccttgg aattttccat ttttcttaat cgcaaggaag atggcacctg ctttactaac
     1081 aggaaatacc atagtgataa agccaagtag tgaaactcca aacaatgctt ttgaatttgc
     1141 aaaacttgtt tcgcaaagtt ctttaccaaa aggtgtgttt aatttggttg caggtaaagg
     1201 tagtgtagta ggatatgaat tatcaagcaa tgaaaatata ggcatggtaa gtcttacagg
     1261 aagtgttgaa gcaggggcta gagtaatgga agctgcagct aaaaatatca taaaggtttc
     1321 tttagaactt ggcggaaaag ctcctgctat agtgtgtaaa gatgcggata ttgatttggc
     1381 agtagaagcg attaaggcaa gtcgaatttg caataatgga caggtttgta attgtgccga
     1441 aagagcttat gtgcatacaa gcatttatga tgaatttgta gataaatttg taaaagccat
     1501 gagtaaggta agtgttggaa ataccttaaa aggtgatttt gatatgggac cattggtcaa
     1561 tcaagcaggg gttgataatg ctttagcaat gcttcaaaga gctacagcta aaggagcagt
     1621 tgtggaatgc ggtggaaaaa tcactgatac aagtgggtat tattttcctg caagtgttct
     1681 tactaatgtt aagcatgagg atgaaattat gcaaaaagaa atttttgctc ccattttgcc
     1741 tattgctaaa tttgatacac ttgatgaagc tattgatatg gcaaatgatt gtgaatatgg
     1801 tcttacaagt tctatttata cacaaaattt agatatagca atgagagcta gcagagaaat
     1861 taaatttggt gaaacttata ttaatcgtga aaattttgag gctatgcaag gttttcatgc
     1921 aggctttaga aaaagtggca taggcggagc tgatggaaaa catggtcttg aagaatattt
     1981 agctacccat gtggtatatt tgcagtataa tactaataaa caatgatttt tatcctatct
     2041 aaatttttag ataggagtta ttataatctt ggaatcaagt atgatgcttt ataactatgg
     2101 attaaacact tttttagtaa tttcttaaaa tcaattttgg aatttttcat tttgtctaaa
     2161 atgagtaaga ttatttttat aagtaaaaca ataatta
//
LOCUS       DAPIWV010000152         2150 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.154, whole genome shotgun sequence.
ACCESSION   DAPIWV010000152 DAPIWV010000000
VERSION     DAPIWV010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.154"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            28..2130
                     /gene="ccaA"
                     /locus_tag="RJ272_001687"
     CDS             28..2130
                     /gene="ccaA"
                     /locus_tag="RJ272_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HDV7382732.1"
                     /translation="MFKSLNIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGLMAIHPNKNLVLKNLKDVNPNKGAQETYKA
                     ISEGKNGVFDYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVSKKRF"
BASE COUNT          794 a          262 c          390 g          704 t
ORIGIN      
        1 aattttttat tttttaggag ttataagatg tttaaatctt taaatatagg tttaaaactt
       61 attttttctg tggcagctgt tgttgttatt ggacttgtta ttttaatttc attaatcaca
      121 aaacaagtaa gtcaaaatat taccaaaaat acagaagata ttcttgcttc tatcacgaaa
      181 gaatatgcta ctcaaactca aggaattttt ggggaaatga tcgctttaaa taaaagtatt
      241 tcaggtactt taacagaaat gtttagatca acctctaaag aagatttaga tatagacaat
      301 ataacaaata ttataaccaa tacttttgat aatagtgctt attctaattt tacttatttg
      361 tatcttattg atccgccaga atactttaaa gaagagagta aattttttaa tactcaaagt
      421 ggaaaatttg ttatgcttta cgctgatgaa gaaaaggata ataaaggcgg aataaaagca
      481 atacaagcta gtgatgaaat agctaatctg caagttgtgc aagatatatt aaaaaaagca
      541 aaatatgggg aaaataaagt atatataggc cgtcctatta agatgaattt agaaggtcaa
      601 gattttgatg ctgtaaatgt tgctatgcct atttttgatc gaaaaaatca agttgtaggt
      661 gtcataggca tgactttaga tttttcagat attgctactt atcttttaga ccctaaaggt
      721 caaaaatatg atggtgaatt aagagttctt ttaaattcag atggtttgat ggcgatacat
      781 ccaaataaaa atctagtttt aaaaaattta aaagatgtca atcctaataa aggtgcacaa
      841 gaaacttata aggccataag cgaaggaaaa aatggagttt ttgactatat agcttctgat
      901 ggtgatgatt cttatgctgc gattaatagt tttaaagtgc aagatagttc ttgggcagtt
      961 ttggtaactg ctcctaaata ttcagtattt aaacccttaa aaaaattaca attaattatt
     1021 cttggtgcat cttttatttt tatttttgtt gttttaggag tggtttatta ttgcgtaaga
     1081 aaaattgtcg catctagatt gcctgtgatt cttagttctt tagaatcatt tttccgtttt
     1141 ttaaatcatg aaaaaattga acctaaggct attgaaattc gtgctaatga tgagctagga
     1201 gcaatgggaa gaatcataaa tgaaaatatt gaaaagattc aaatatcttt agaacaagat
     1261 caaaatgctg tagatgaatc ggtgcaaact gctagagaaa ttgaaaaggg taatttaact
     1321 gcaagaatta ctaaaaatcc tataaatcct caattagtag aacttaaaaa tgttcttaat
     1381 aggatgcttg atgttttaca aagtaaaatt ggttctaata tgaatgaaat taatagagtt
     1441 tttgatagtt ataaggctct tgattttagt acagaagtat ttaatgctaa aggtgaagtt
     1501 gagattacaa ctaatatttt aggcaaagaa attaaaaaga tgcttttggc ttcttcaaat
     1561 tttgctaaag atttagccaa tcagtcagaa gagttaaaaa attctatgca aaaacttgct
     1621 gatggctcta atgcacaagc gagttcttta gaacaatcgg ctgcagccgt agaggagatt
     1681 aattcttcta tgcaaaatgt aagtggaaaa acagttgagg ttgcttcaca agctgatgat
     1741 ataaaaaata ttgtcaatgt gattaaagat atcgctgagc aaacgaatct tcttgcttta
     1801 aatgcagcta ttgaagctgc acgtgctgga gaacatgggc gtggttttgc agttgttgca
     1861 gatgaggtaa gacagcttgc ggaaagaaca ggaaaatcct tatctgaaat cgaggcaaat
     1921 attaatatac ttgttcaaag cgtaaatgaa gtagcagaat ctgtaaaaga acaaacagca
     1981 ggaatcacac agattaacga tgctatagca caacttgaaa ctgtaactaa ggaaaatgtc
     2041 gaagttgcaa atgtcaccaa taatataaca aatgaagtca atcaaattgc tgcggcaatt
     2101 cttgaagatg tgagtaaaaa aagattttaa aaaagctcat ttttgagctt
//
LOCUS       DAPIWV010000153         2150 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.155, whole genome shotgun sequence.
ACCESSION   DAPIWV010000153 DAPIWV010000000
VERSION     DAPIWV010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.155"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..460)
                     /locus_tag="RJ272_001688"
     CDS             complement(<1..460)
                     /locus_tag="RJ272_001688"
                     /inference="COORDINATES: protein motif:HMM:NF015786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDV7382733.1"
                     /translation="MNSNDIVLLKCGEVSYKIYLPNRNIDYIQKKIYNELIPYEYEML
                     QDFLKKAKKNTIIVDIGANIGNHSLYLAAHGFDVCAFEANQTLCDIFKISIKLNGFKN
                     LKLYEFGLSDKKEMAVLDNLNPENLGGQSLKIEDFGNIFLHPLDDIKFEKD"
     gene            complement(480..1703)
                     /gene="wecC"
                     /locus_tag="RJ272_001689"
     CDS             complement(480..1703)
                     /gene="wecC"
                     /locus_tag="RJ272_001689"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002952841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDV7382734.1"
                     /translation="MNQFNKVCVIGLGYIGLPTAAIFASRKIKVIGVDINQNIVDIIN
                     KGKIHIVEPGLDILVHMVVNDGYLKATTLPEEADAFIIAVPTPFKGDNHEPNLDYIEM
                     ASKAIAKVLKKGNLVILESTSPVGTTEQMAKWLAEERSDLSFPHQCGEVSDIKIAHCP
                     ERVLPGQVIRELVENDRIIGGMTQKCAEYAIRLYKIFVQGECIMTNARTAEMTKLTEN
                     SFRDLNIAFANELSILCDKLDINVWELIKLANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VYQNPNEAKIIKTAREVNDNKPNFVVQKIKKKIKDILGPKIACLGLAFKPDIDDLRES
                     PALDIVIKLASENASQILVVEPNIKQLPLKLQNKRNIKLVCLSQALDEADVVAVLVRH
                     KEFIEVQSDKVVSFC"
     gene            complement(1690..>2150)
                     /locus_tag="RJ272_001690"
     CDS             complement(1690..>2150)
                     /locus_tag="RJ272_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HDV7382735.1"
                     /translation="EALKIIAINNPDIDIVYPVHLNPNVQKPVKMLLLNISNIYLINP
                     LKYEEFIYLMSKSYFIITDSGGIQEEAPSLGKPILVMRETTERPEAVEAGVVKLVGAC
                     KQNIIRESQKLIDDQDEYEKMSKAYNPYGDGRACEKIINILIKGKNNESI"
BASE COUNT          679 a          395 c          245 g          831 t
ORIGIN      
        1 tatctttttc aaattttata tcatcgagag gatgtaaaaa aatattacca aaatcttcaa
       61 tttttaaaga ttgtcctcct aaattttcag gatttaaatt atctaaaact gccatttctt
      121 ttttgtctga taatccaaat tcatataatt ttaaattttt aaatccattt aactttatac
      181 ttattttaaa tatatcacaa agtgtttgat tagcctcaaa agcacataca tcaaagccat
      241 gtgctgcaag atataaagaa tgatttccta tatttgctcc aatatcaact ataatagtat
      301 tctttttcgc cttttttaaa aaatcttgaa gcatttcata ttcataagga attaactcat
      361 tgtaaatctt tttttgtata taatcgatat ttctatttgg aagatagatc ttatagctta
      421 cttctccaca ctttaataaa acaatatcat tagaattcat aacataatcc ccttagttat
      481 taacaaaaac ttacaacttt atcggattgc acttcgataa attctttatg tcttactagt
      541 actgcaacaa catctgcttc atcaagtgct tgacttagac aaactaattt tatatttctt
      601 ttattttgta attttaatgg tagttgtttt atatttggct caacaaccaa tatttgacta
      661 gcattttcac ttgcaagttt tataactata tctaaagcag gagattctct taagtcatca
      721 atatctggtt taaatgccaa tcctaaacaa gcgatcttag gccctaatat atctttaatt
      781 tttttcttta ttttttgcac aacgaaattt ggtttattgt cattgacttc tctagccgtt
      841 ttaataatct tggcttcatt tggattttga tatacaataa accatggatc cactgctata
      901 caatgtcctc cgactccaca acccggttgc aaaatattaa ctctaggatg acgattagca
      961 agttttataa gttcccatac atttatatct aatttatcac ataaaataga taattcatta
     1021 gcaaatgcta tatttaaatc tctaaatgaa ttttcagtaa gtttagtcat ttccgctgtt
     1081 ctagcatttg tcataatgca ttcgccttga acaaaaattt tatatagcct tattgcatat
     1141 tcagcacatt tttgagtcat acctccaatt attctatcat tttctacaag ctctcttata
     1201 acttgtccag gtaaaaccct ctctggacaa tgggctattt taatatccga cacttcgcca
     1261 cattgatgag gaaaactcaa atctgatctt tcttctgcaa gccactttgc catttgttct
     1321 gttgttccaa ctggagatgt tgattccaag attaccaaat tacctttttt taaaactttt
     1381 gctattgctt tagatgccat ctcaatataa tctaaatttg gctcgtgatt atctccttta
     1441 aaaggagttg gcacagcaat aataaaagca tcagcctctt caggtaatgt tgttgctttg
     1501 agataaccat catttacaac catatgtacc aaaatatcta atccaggctc tactatatgg
     1561 atttttcctt tatttataat atctactata ttctgattta tatccacacc tataacctta
     1621 atttttctac tagcaaaaat agcagcggta ggaagaccta tataaccgag tccaatgaca
     1681 catactttat taaattgatt cattattttt cccctttatt aatatattta taattttctc
     1741 acaagcccta ccatctccat aaggattata tgctttgctc attttttcat actcatcttg
     1801 atcatcaatt aacttttgtg attctcttat aatattttgt ttacaagctc caactaattt
     1861 taccactcca gcttctacgg cttctggtct ctctgttgtt tcacgcatta ccaatatggg
     1921 ctttcctaaa ctaggagctt cttcctgtat accacccgaa tcggtaatta taaaatacga
     1981 ttttgacata agatatataa attcctcata tttaagagga tttattaaat aaatattaga
     2041 aatatttaaa agaagcattt ttacaggttt ttgcacatta ggattcaagt gaacaggata
     2101 aactatatcg atatctggat tattgatcgc aattattttt aatgcttcgc
//
LOCUS       DAPIWV010000154         2058 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.156, whole genome shotgun sequence.
ACCESSION   DAPIWV010000154 DAPIWV010000000
VERSION     DAPIWV010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.156"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            37..>2058
                     /locus_tag="RJ272_001691"
     CDS             37..>2058
                     /locus_tag="RJ272_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HDV7382736.1"
                     /translation="MRLFIAEKPELGRAIAEGLDGNYKSGEGYIQKGDNIVTWAFGHI
                     LELAKPEEYDEKYKLWKLEDLPLPIKEFKYLPKKESKKQLKIICDLIHSDKITSIVNC
                     GDADDEGQILVDEIIQYSKTSKPVFRVLINDLTPKAVKEEIAKIKPNADFKGMSERGF
                     ARSQADWIVGINLTRAYTIMARKNGYEGILSVGRVQTPILALIVNRDKEFENFKSINY
                     YSLLGDFNINNNTIKARLKTEDKILDENLAKEIKESCENQNAKINLKIENKKEYPPLP
                     YNLLVLQAECAKLFGFSPDKTLEITQNLREKHKAITYNRSDCQYLPETMFEQAPNILN
                     IIKENLNSNDEIQALIASSDLTIKSKAFNDANISAHYGIIPTQNKISSQLTQDELVVY
                     NLIAKRFIIQFFHPREYQTTTINLEVNQRIFTATQNKTTKSGFRSLWQNIDSEEEQEN
                     NENDINDLSILKNGDIAKCSLIQIEKKQTKPRPYYTMTTLLKDLNSVAKYVSDERIKK
                     LLIEKDKDKKGESGGIGTPATRSNHIKTLIEREYIEVSKDKKQIIKSTKKGRDLIKLS
                     PKSLITPDMTALWFEQQKMIEISELRREQFLEEITKEVISEIQRIDKNQEFKILDNEN
                     KPKIQCPQCNKGFLTKRKGKYGNFWGCSEFKQGCKAMYYDNNRKPKIINV"
BASE COUNT          900 a          266 c          328 g          564 t
ORIGIN      
        1 tagcaaacaa taagataaga tttttgaaag gcaaaaatga gattatttat agctgaaaaa
       61 cccgaacttg gtagagcaat tgcagaagga ctagatggca attataaaag cggagaagga
      121 tatatacaaa aaggtgataa tattgttact tgggcttttg ggcatattct agagcttgcg
      181 aaacctgaag aatatgatga aaaatataag ttatggaaac ttgaagactt accactaccc
      241 attaaagaat ttaaatactt acccaaaaaa gaaagtaaaa aacaattaaa aattatttgc
      301 gatttaatcc atagcgacaa gattacttct attgtaaatt gtggggatgc agatgatgag
      361 ggtcaaattc ttgttgatga aattattcaa tactccaaaa cttctaaacc tgtatttagg
      421 gttttaatta atgatttaac accaaaagca gtaaaagaag aaatagcaaa aattaagcca
      481 aatgcagatt ttaaaggaat gagcgaaaga ggttttgcaa gaagtcaagc agattggata
      541 gtaggcataa atcttactag ggcgtatacc ataatggcac gaaaaaatgg atatgagggc
      601 attttaagcg taggtagagt tcaaacgcct attttggctc ttatagttaa tagagataaa
      661 gaatttgaaa attttaaaag tataaattat tattctttgc taggtgattt taatatcaac
      721 aataatacta ttaaagcaag attgaaaaca gaagataaaa ttttagatga aaatttagct
      781 aaagagatca aagaatcttg tgaaaaccaa aatgcaaaaa ttaatttaaa aatagaaaac
      841 aaaaaagaat atccaccgct accttataac ctacttgttt tacaagctga atgtgcaaaa
      901 ctttttggtt ttagccctga taaaacatta gaaatcactc aaaatttaag agaaaaacat
      961 aaggctataa cttataatag atcagattgt caatatttac ctgaaacaat gtttgaacaa
     1021 gcaccaaata ttttaaatat tataaaggaa aatttaaatt ctaatgatga aattcaagct
     1081 ctcattgcta gcagtgattt aacaataaaa agcaaggctt ttaacgatgc taacatttca
     1141 gcacactatg gaataatccc tacccaaaat aaaatttcat cgcaattaac tcaagatgaa
     1201 ttagtcgttt acaatctaat cgctaaaaga tttattatcc aattctttca tcctagagaa
     1261 tatcaaacta ctacaattaa tttagaagta aatcaaagaa tttttaccgc tactcaaaac
     1321 aagacaacaa aaagtggttt tagaagtctt tggcaaaata tagatagcga agaggaacaa
     1381 gaaaataatg agaatgatat aaacgattta tctatcttaa aaaatggtga tattgcaaaa
     1441 tgctctttga tacaaattga aaaaaagcaa acaaagccac gcccttacta cactatgaca
     1501 acgctactta aagatttaaa tagtgtcgca aagtatgtgt ctgatgaaag aattaaaaaa
     1561 ttactgattg aaaaagacaa agacaaaaaa ggtgaaagtg gtggtatagg aacacctgca
     1621 acaagatcta atcatataaa aacattaatt gaaagagagt atatagaagt aagtaaagat
     1681 aaaaaacaaa ttatcaaatc cactaaaaaa ggtagagatt taattaaact ttctccaaaa
     1741 tcacttatta ctcctgacat gacagcattg tggtttgagc aacaaaaaat gatagaaata
     1801 tcagaattaa gaagagaaca attcttagaa gaaatcacaa aagaagtaat tagcgaaatt
     1861 caaagaattg ataaaaatca agagtttaaa atactagata atgaaaacaa accaaaaatt
     1921 caatgtccgc aatgcaataa aggattttta accaaacgaa aagggaaata tggaaacttt
     1981 tggggttgta gtgaatttaa acaaggttgc aaggctatgt attatgacaa taatagaaaa
     2041 cctaaaataa taaatgta
//
LOCUS       DAPIWV010000155         1972 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.157, whole genome shotgun sequence.
ACCESSION   DAPIWV010000155 DAPIWV010000000
VERSION     DAPIWV010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.157"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..1397
                     /locus_tag="RJ272_001692"
     CDS             <1..1397
                     /locus_tag="RJ272_001692"
                     /inference="COORDINATES: protein motif:HMM:NF012744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HDV7382737.1"
                     /translation="ETFNMVKNSQFLLQGIFSNEDFKTVFEFQDENQQKISHNINKAG
                     DIQTLAIPKECKFIRFGLRIQGSGKFQIDNLILDFLNPQPFALIAKSKKLVLTKQYPS
                     YDDLYKYGFLHSRIKAYKEKGILVDVFKLSNTQRYECREFEGIDVMTASNDVLEETLI
                     SGQYDHILVHFLDKNMWSVLKKFIDKIKITVWIHGAEIQIWQRREFEFERYSEIEIQR
                     QKKLSDQRVKFWTEIFNANYKNIHFVFVSEYFKNESLGDLKVALEPSKYTIIHNPIDT
                     SMFDYLPKSPDDRKKILSIRPFTSRKYANDLSIKAILELSKREFFKELEFFIAGDGVL
                     FDELTNNLKSFKNITLYKGFLTQKEISNLHKKYGIFLNPTRMDAQGVSRDEAMSSGLV
                     PITNNIAAIPEFIDGECGILVAPENAKLLADAIEFLYKNPNEFMKLSINAANRVRNQC
                     DKNTIISKELDIIL"
     gene            1451..1639
                     /locus_tag="RJ272_001693"
     CDS             1451..1639
                     /locus_tag="RJ272_001693"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382738.1"
                     /translation="MKNNFELIDYYARSSFASLASSAMIEQSVLDNIQSSFQKRMVLR
                     DMDKSFIRKLKKMILIVY"
BASE COUNT          761 a          199 c          318 g          694 t
ORIGIN      
        1 gagaaacttt taacatggta aaaaattcac agtttctact tcaaggtatt ttttcaaatg
       61 aagattttaa aacagtattt gaatttcaag atgaaaacca acaaaaaatt tctcataata
      121 ttaacaaggc tggagatatt caaactttgg ccatacctaa agagtgcaaa tttatccgtt
      181 ttggtctacg catacagggc agcggcaaat ttcaaataga taatttaatt ttagattttt
      241 taaatccaca accttttgca cttattgcta aaagtaaaaa attggtctta actaaacaat
      301 atccttctta tgatgattta tataaatatg gttttttaca ttcaaggata aaagcataca
      361 aagaaaaagg tatcttagtt gatgtattta agcttagcaa cacgcaaaga tatgaatgca
      421 gagaatttga aggtattgat gtgatgacag cctctaatga tgttttagaa gaaactttaa
      481 taagtggaca atatgatcat atattagtac attttttaga taaaaatatg tggagtgtct
      541 taaagaaatt tatagataaa attaaaatta cagtttggat tcatggtgct gaaattcaaa
      601 tttggcaaag aagagaattt gaatttgaaa gatatagtga aattgagatt caaaggcaaa
      661 aaaaactttc tgatcagaga gtaaaatttt ggacagaaat ttttaatgca aattataaaa
      721 acatacattt tgtttttgta agcgaatatt ttaaaaatga aagtttgggt gatttaaaag
      781 tagctttaga acctagtaag tatactatta tacataaccc aatagatact tcaatgtttg
      841 actatttacc taaatctcct gatgatagaa aaaaaattct ttctatccgt cctttcacct
      901 ctagaaaata tgcgaatgat ttaagcatca aggctatttt ggagcttagt aagagagaat
      961 tttttaaaga attagaattt tttatagccg gtgatggggt attatttgat gaattaacta
     1021 ataatttaaa atcttttaaa aatattactt tgtataaagg atttttaacc caaaaagaaa
     1081 tatcaaattt acataaaaag tatggtatat ttttaaatcc tacaagaatg gatgctcaag
     1141 gtgtctctag agatgaggct atgtcaagtg gtttggttcc gatcactaac aacattgcag
     1201 caatcccaga atttatagac ggtgaatgtg gaattttagt tgctccagaa aatgcaaagt
     1261 tgttagctga tgcaattgaa tttttatata aaaatccaaa tgaatttatg aaattatcta
     1321 tcaatgctgc aaatagagta agaaatcaat gtgataaaaa tacgattata tctaaagaat
     1381 tggatataat attatgaaaa aaatttgtat ttttggatcg tgtgttagta gggatataat
     1441 tgaatatgat atgaaaaata attttgaatt aatcgattat tatgctagaa gttcatttgc
     1501 ttctttggct tcaagtgcta tgatagagca gagtgttctt gataatatac agtcatcttt
     1561 tcaaaaacgc atggtgttac gtgatatgga taaatctttt ataagaaagt taaaaaaaat
     1621 gattttgatt gtttattgat cgattttatt gatgatagat ttcattttta taaaatatta
     1681 aaaaatagca tagttacagt ctcaaatgag tataaaaaag caaaaggaaa gttatatagt
     1741 tccaatatga tttattctaa gagtcaagag catattgatt tgtggaggaa aggtattgaa
     1801 aaatatatat gatttatata tgattcaaga taaaattgtt ttaaataagg tatattggtc
     1861 agatgttttt tataatggaa ataaattttc aattagtcaa gaagaattga ttagcaataa
     1921 taatttttta aaagaacgat atgatgattt tgttaatttt tttcctaaaa tt
//
LOCUS       DAPIWV010000156         1944 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.158, whole genome shotgun sequence.
ACCESSION   DAPIWV010000156 DAPIWV010000000
VERSION     DAPIWV010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.158"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            28..669
                     /locus_tag="RJ272_001694"
     CDS             28..669
                     /locus_tag="RJ272_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HDV7382739.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSYKLADVYFVSYFLNKQRNFSNLNEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(704..1692)
                     /locus_tag="RJ272_001695"
                     /pseudo
     CDS             complement(704..1692)
                     /locus_tag="RJ272_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
BASE COUNT          661 a          317 c          267 g          699 t
ORIGIN      
        1 aaaattttat ttaaccaagg atataatatg cgtaaatttt tttgcaaatt tgttttaacg
       61 cttgtatttt gttcaagttt tgcattagca aataatagtt ttattactct taatccaagt
      121 ttacctagct ctgaaaatag tgtaatagaa gcattttctt ataaatgtat acattgttat
      181 aatcatcata aatttggaac ccttgaaaaa ctgagagaag cttttccaaa tttacatttt
      241 aaactctatc ctgtaagttt aatgaatggg gaattttcca aagaaatgaa tgagcttttt
      301 gcctttgctc aatacaaaga tgagcaaaat ggtaaagacg cgagttattc tgatagttta
      361 tcttataaac ttgctgatgt ttattttgtt tcttattttt taaacaagca aagaaatttt
      421 tcaaatttaa atgaatttta cgacataggt ttaaaggcta tgaatgtaaa taaaaatgaa
      481 gtattaaatt ttttaaatac cccaaaagct aaagaaattt taagcgagtt tcaaagagct
      541 aatgatatag ctaaaaccta tggcacccct gcttttgttg ttaatggaaa atatcaaatt
      601 aacccaagtg caatcaattc gatgcaagat ttagaagatc tagttaaaaa attaagtaat
      661 atgaaataat aaatttttaa ggcaataaaa attgccttaa aaattatttt ttgatcatat
      721 ttgtataagg tccatagcga tgttgggttg tagaaaagct atcatcataa ggtcctacat
      781 ccatatctaa aggcttaacc tttctatctg gaaagtcttt atttctattt gctttaatag
      841 gacgagcttg tgaattcatg taagctgcta catcataagc atcttcaaga cttaagtcag
      901 gcgcaccttg aggcatattt tctttaatat aagaagcagc tttgataaga cgatacattc
      961 cagctcctgt attataacta tcatcacccc aaagtggtgg ataaagataa tacgcccctg
     1021 tgctatcctc atttttaagc cctaagccat tttcttgatg acaaacggca catttatcca
     1081 tataaattgc cttacctttt tttaggatca gctgctctta agatgaaatc tatcttctta
     1141 agtccctatc cttctatctt agctcctact ggaactcctt gagataacca ttgcatataa
     1201 gttagcatgg ctttcatttc aggtgtatca ctaaggcatt cttttgccat tcatagagcg
     1261 ttcaaaacag ccattgatcc tatctgctaa ggtaattact ttatctcctc ttgcattata
     1321 ttgtggaaat cttgcccaaa ttcctacaaa acccgattga ttttgcacac ttccaccatt
     1381 agcatgacag cttgaacaag aaagattatt tcccgcaaat ctttttttag gatctttggc
     1441 ttgtggaccc acatatttgc ttgtttcatt aagaatttta tttcccaaaa taaccatttt
     1501 gctatattct gaattttttg gcattttagt ttcatctata gtgccatctt catttaattc
     1561 cttaggtaaa ttccatttgg cagtaggcag atcaatacct gttgcactct tagttttttc
     1621 caaatttgga tctaaggcta aagcacaact tccacataac aacaaagtta aaactataga
     1681 aaatttattc atcaatttcc ctccttattt tgcgtaattt aaattcggta taagacttta
     1741 tttagaaaaa gtcaataaaa cctaattaca ttttaagaaa aaagctttaa accttaaaat
     1801 aatattcgtt tatatttaaa atagaactta tatatttaaa gcaaaaataa agttttttcg
     1861 ctataataaa atcttgcaat atttttaaag gttaggttaa tgaaaaattt aagtattcaa
     1921 gaaaaaaaag acttagacaa ctgc
//
LOCUS       DAPIWV010000157         1894 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.159, whole genome shotgun sequence.
ACCESSION   DAPIWV010000157 DAPIWV010000000
VERSION     DAPIWV010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.159"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            177..>1894
                     /locus_tag="RJ272_001696"
     rRNA            177..>1894
                     /locus_tag="RJ272_001696"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          605 a          341 c          503 g          445 t
ORIGIN      
        1 tggatttaag gattataaat taaagacaag tttcaaactc acagcttagt tgagactaaa
       61 tcatttagtt ttatattaag tgtttgaatg ctttccgtct taagataaag aagtcttatc
      121 ataaaaactt taacaaggaa gtgatgcgtt ttagaatcaa taataaaagg taaaaaaggt
      181 aagctactaa gagcgaatgg tggatgcctt gactggtaaa ggcgatgaag gacgtactag
      241 actgcgataa gctacgggga gctgtcaaga agctttgatc cgtagatttc cgaatggggc
      301 aacccaatgt atagagatat acattaccta tataggagcg aacgagggga attgaaacat
      361 cttagtaccc tcaggaaaag aaatcaatag agattgcgtc agtagcggcg agcgaaagcg
      421 caagagggca aacccagtgc ttgcactggg ggttgtagga ctgcaatgtg caagaggtaa
      481 gtttagcaga acattctgga aagtataacc atagagggtg atagtcccgt atgcgaaaaa
      541 caaaccttag ctagcagtat cctgagtagg gcgggacacg aggaatcctg tctgaatccg
      601 ggtcgaccac gatccaaccc taaatactaa taccagatcg atagtgcaca agtaccgtga
      661 gggaaaggtg aaaagaactg aggtgatcag agtgaaatag aacctgaaac catttgctta
      721 caatcattca gagccctatg taggaataca gggtgatgga ctgccttttg cataatgagc
      781 ctgcgagttg tggtgtctgg caaggttaag caaacgcgaa gccgtagcga aagcgagtct
      841 gaatagggcg cttagtcaga tgctgcagac ccgaaacgaa gtgatctatc catgagcaag
      901 ttgaagctag tgtaagaact agtggaggac tgaacccata ggcgttgaaa agccccggga
      961 tgacttgtgg ataggggtga aaggccaatc aaacttcgtg atagctggtt ctctccgaaa
     1021 tatatttagg tatagcgttg tgtcgtaata taagggggta gagcactgaa tgggctaggg
     1081 catacaccaa tgtaccaaac cctatcaaac tccgaatacc ttatatgtaa tcacagcagt
     1141 caggcggcga gtgataaaat ccgtcgtcaa gagggaaaca acccagacta ccagctaagg
     1201 tccctaaatc ttacttaagt ggaaaacgat gtgaagttac ttaaacaacc aggaggttgg
     1261 cttagaagca gccatccttt aaagaaagcg taatagctca ctggtctagt gattttgcgc
     1321 ggaaaatata acggggctaa agtaagtacc gaagctgtag acttagttta ctaagtggta
     1381 ggagagcgtt ctatttgcgt cgaaggtata ccggtaagga gtgctggagc gaatagaagt
     1441 gagcatgcag gcatgagtag cgataattaa tgtgagaatc attaacgccg taaacccaag
     1501 gtttcctacg cgatgctcgt catcgtaggg ttagtcgggt cctaagtcga gtccgaaagg
     1561 ggtagacgat ggcaaattgg ttaatattcc aataccaaca ttagtgtgcg atggaaggac
     1621 gcttagggct aagggggcta gcggatggaa gtgctagtct aaggtcgtag gaggttgtac
     1681 aggcaaatcc gtataacaat actccgagaa ctgaaaggct ttttgaagtc ttcggatgga
     1741 tagaagaacc cctgatgccg tcgagccaag aaaagtttct aagtttagct aatgttgccc
     1801 gtaccgtaaa ccgacacagg tgggtgggat gagtattcta aggcgcgtgg aagaactctc
     1861 tttaaggaac tctgcaaaat agcaccgtat cttc
//
LOCUS       DAPIWV010000158         1889 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.160, whole genome shotgun sequence.
ACCESSION   DAPIWV010000158 DAPIWV010000000
VERSION     DAPIWV010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.160"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            128..1372
                     /locus_tag="RJ272_001697"
     CDS             128..1372
                     /locus_tag="RJ272_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005020469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382740.1"
                     /translation="MRCRKKTNKILLYDGGAKVGKYTQEYSKALFEAHNIKQNSPYKD
                     YKPQYLDPEFHTGEKSTLLEFKDWQSIYLKDPIKGSIAPWTKAEKAYYKSLKTKKERY
                     KYLVIRSGIRSVVIDIPYEAIGAVDEKGNVDPKYEKLYRIVDDNKHNLRSSLFHNEWG
                     MAAGILGDYKYLANDMFQNGFNARFIQATILYIQLSGGSSILDKPHLLGAVYGYADIA
                     VGSGLVGVHKNPLREQEIKTLAKTLKPDEFGMLPFIDEIMGVDWVIDYNKYRIARDEF
                     GSMYKALRSDIVEGKIKDPRDIDSTYESRREFDHHRGGYYNGMVNGYGTDTPNDWSEE
                     RAQLFNDTLILHAKLAALTPPQGYPNAPYYFTPENLEWYYKRHKLDRLLDPRIPAIYR
                     YNFPQELRAKIRAYAKEHNIKE"
     gene            1395..>1889
                     /locus_tag="RJ272_001698"
     CDS             1395..>1889
                     /locus_tag="RJ272_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382741.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSDTHYKNPLLQYA
                     ITQKQEQENIVFALKNNENLNASFANLNALKLALEEKNFYLNFIDLNSKESLLSFYNQ
                     IISNN"
BASE COUNT          764 a          233 c          305 g          587 t
ORIGIN      
        1 aaagagtgaa aataatgaat ttcattagct actactatca ttatgaaaaa tggtttatat
       61 atgggttaaa ttaagaaagg ataaaaatga gtgaaactta cgagatttat acacctaatg
      121 gtattatatt agatgtagaa aaaaaacaaa taaaatttta ttatatgatg gaggagctaa
      181 ggtaggcaaa tacacccaag aatattccaa agctttgttt gaagcacaca atatcaaaca
      241 aaactccccc tacaaagact ataaacccca atacctagat cctgaatttc acacagggga
      301 gaaatctact ttacttgaat ttaaagattg gcaaagcata tatttaaaag atcccattaa
      361 aggaagcata gctccttgga ctaaagcaga aaaagcttat tataaatctt taaaaactaa
      421 aaaagaaaga tataaatatt tagttataag aagtggtata agaagtgttg ttatagatat
      481 accttatgaa gctataggag ctgtagatga aaaaggaaat gtagatccta aatatgaaaa
      541 attatataga atagtagatg ataataaaca taatctaaga tcaagtttat ttcataatga
      601 atggggtatg gcagcaggaa tattaggtga ttataaatac ctagctaatg atatgtttca
      661 aaatggtttt aatgcaagat ttatacaagc tactatactt tatatacaac taagtggagg
      721 aagtagtata ttagataaac ctcatttatt aggtgctgtt tatggttatg cagatattgc
      781 tgtaggaagt ggtttagtag gagtgcataa aaatccttta agagaacaag agattaaaac
      841 cttagctaag actttaaaac ctgatgaatt tggtatgctt ccttttatag atgagattat
      901 gggagtagat tgggtgattg attataataa atatagaatt gctcgcgatg aatttggaag
      961 tatgtataaa gccttaagaa gtgatatagt tgagggcaaa ataaaagatc caagggatat
     1021 agattctact tatgaaagca gaagagaatt tgatcatcat aggggagggt attataatgg
     1081 catggtaaat ggctatggaa cagatacacc taatgattgg agtgaagaaa gagctcaact
     1141 ttttaatgat actttaatat tacatgccaa attagcagcc ctcactcctc ctcaaggcta
     1201 tcctaatgca ccttattatt ttacccctga aaatctagaa tggtattata aaagacataa
     1261 gcttgataga cttcttgatc caagaattcc tgctatatat agatataatt ttccgcaaga
     1321 acttcgagct aagataagag cttatgctaa agagcataat ataaaagagt aaaccacaaa
     1381 agaaaggaaa aacaatgcaa aaaatacttc aaatcgattt agaaaaaaga aaagctttag
     1441 agaatttcaa aaatctagct ttattaggat taggtggaac aatgctttta aatttaaaag
     1501 aacaagcttt ggattttagt caagaattaa cttatataaa tacttatgat aagtatttaa
     1561 atttaaagct tgattctttt tatatccctt ctacactttt atctttgctt caattaacta
     1621 agaaaagcaa agaagctttt tatatcaatg ttttaatcaa tagcgataca cattataaaa
     1681 atcctttatt acaatatgct attacccaaa aacaagaaca agaaaatatc gtttttgctt
     1741 taaaaaataa tgaaaatctt aatgcttctt ttgcaaatct taatgcttta aaattagcct
     1801 tagaagaaaa gaatttttat cttaatttta tagacttaaa cagcaaagaa agtcttttaa
     1861 gtttttataa tcaaataata agcaataat
//
LOCUS       DAPIWV010000159         1888 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.161, whole genome shotgun sequence.
ACCESSION   DAPIWV010000159 DAPIWV010000000
VERSION     DAPIWV010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.161"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            48..620
                     /locus_tag="RJ272_001699"
     CDS             48..620
                     /locus_tag="RJ272_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HDV7382742.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(625..1581)
                     /locus_tag="RJ272_001700"
     CDS             complement(625..1581)
                     /locus_tag="RJ272_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382743.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSRIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKNIASITTLIFIGILSIILPRNT
                     TFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1642..1851)
                     /locus_tag="RJ272_001701"
     CDS             complement(1642..1851)
                     /locus_tag="RJ272_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7382744.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT          759 a          223 c          258 g          648 t
ORIGIN      
        1 atctaataaa atttttatat tgaaaattac tataaaaaag gaaaaaaatg aaaaaagttt
       61 tattgagttc attggttgcg gtgtctttgt taagcacagg tttgtttgct aaagaatata
      121 ctttagataa agcacataca gatgtaggtt ttaaaatcaa acatttacaa attagcaatg
      181 taaaaggaaa tttcaaagat tattctgcgg tgattgattt tgatcctgcg agtgctgaat
      241 ttaaaaagct tgatgtaact ataaaaatcg catctgtaaa tacagaaaat caaacaagag
      301 ataatcactt acaacaagat gattttttca aagcaaaaaa atatcctgat atgactttta
      361 caatgaaaaa atatgaaaaa atcgataatg aaaaaggcaa aatgacagga actttaacta
      421 tagctggagt ttctaaagat atcgttttag atgctgaaat cggcggtgta gctaaaggca
      481 aagatggaaa agaaaaaata ggattttctt taaatggaaa aatcaaacgc tctgatttta
      541 aatttgcgac aagtacttca actattactt taagtgatga tattaattta aatatcgaag
      601 ttgaagcgaa cgaaaaataa ttttttagtc taagagtctt gctcttagac tttgtaaatt
      661 tttatccaaa ttttcttcac tttcttgcca aatcaattta aaatccggtt taaaattttc
      721 attttctaaa ttaaattccg tgtttttcaa ggtggattct aaaaaagcaa gatgatttaa
      781 agcttgattt ttatcattaa aaattaaaat aaaatcattt tctacgataa aaatttttgc
      841 tctaaagcgt tttaaaattt ttgcaatttg ttttaaaatg agtttggtat agctttcttt
      901 ggtatctttt agttcattaa aatgaagcaa ggcaatgata tagttgtttt ttccttttgt
      961 aaagcgtgta aggctttttt cattgggtag ctttgttaag gtgtcaaaaa aagctaacct
     1021 ataagcgtga tttaaaagat aaaaacaaaa aaccaaactt gcaaattcaa aatatcttat
     1081 tcctgctcct tcttggaata aaaattgaaa atacgcagta aaaaatgcga taagaagata
     1141 atattcttta gttttaaagg ttttgataaa aatgagtatt aagccgacta aaaaaaataa
     1201 aaatcctaat tcactcacag gtttaaaaaa atctaatgca ataaaatgaa attctaaacc
     1261 agcactatta aaagtagtat ttctaggtaa aatgatactt aaaatgccta taaaaataag
     1321 agttgtaatt gaagcgatat tttttttatt taaaattaaa acatgatgtt ttccaacgca
     1381 aaatagagta aaaatcatag gtaaaaataa agctacaaat aaattagctt gaaaaaaact
     1441 tgtataaaaa taaggcaact tagctcctaa tagcactaaa gtcaaaaaga aaattcttga
     1501 atttttaaag taaaaggata atacaagtgc tgaaatttca aaaataaaac tcaatgatat
     1561 taaaaaatct aataaaaaca tttcaaatcc ttgattttaa taaaagtgat aattgtatag
     1621 aaaaaagctt aaaagtggat tttatttaaa tttagcaatc tcatcttgta tagtttgttc
     1681 tatatgaagc aattcttcat gagttttttt gctattttct aaaagttcat caaatttaaa
     1741 gccaagcata acaatacgat ataaattggg tttatatttt ctccaattat ataaagtgct
     1801 aacatcaatg tctagttcat atgccatatc acgcttgctc ttttttgtca ttttttacct
     1861 taaaaattta gcctttaaaa aattttac
//
LOCUS       DAPIWV010000160         1748 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.162, whole genome shotgun sequence.
ACCESSION   DAPIWV010000160 DAPIWV010000000
VERSION     DAPIWV010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.162"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            113..1321
                     /locus_tag="RJ272_001702"
     CDS             113..1321
                     /locus_tag="RJ272_001702"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7382745.1"
                     /translation="MCKISVIIPIYNVEKYLDECLKSVINQTYKDLDIILVDDGSTDN
                     SLNIAKEYAKKDERIFLIAKGNGGLSSARNAGLEFIKGTKLRDFFENEENIISYKQSN
                     TFKNSTKELTKEEINKNFTKLSKNIIQTKLKNLNDFIIQDLPDNIIHFLDSDDYLELD
                     CIEKCVNEMSKDDIDICTHNIKEFLEEEQVFRQKAECDIYLNCKYTKNISGIDFFKKN
                     NICEFYFAWQGSFRAKLLNIYKLRFTYGIYHEDHDFGTILFLSAKKITCVKEELLIYR
                     IRANSIIKSEKEKIIPQSIPFYLEPLRYYFDDYSKLRAYFKAYCMCVIGVNILLFCKE
                     SNILDKKTPNKIFLHYIHYYLEQYYPLNYLNINDLFTLVGINLKLFRFKIMLRFYFRH
                     PKKIFKKNNA"
     gene            1314..>1748
                     /locus_tag="RJ272_001703"
     CDS             1314..>1748
                     /locus_tag="RJ272_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7382746.1"
                     /translation="MPKISIILPTFNVEKYIAKALESCINQSFKDIEIIVVDDCGSDK
                     SIDIAKEYAKKDERIKIIHNEENLGTFAARNNGVKHSNGEYLMFLDPDDFLELEACEK
                     LILLINTYKICQFSFTQISNGIKLKSVFKDTLKNLKEFKGIYW"
BASE COUNT          713 a          163 c          257 g          615 t
ORIGIN      
        1 tgatggaaaa gtattttaaa aataaattta attgaatgtg ttataattat cgcttagaat
       61 accatgttgg agtattggta ttgttaagct taaaatttaa taaagaatta atgtgtgtaa
      121 aatttccgtc ataatcccaa tctataatgt agaaaaatac ctagatgagt gtttaaaaag
      181 cgttataaat caaacttata aagatctaga tattatttta gtagatgatg gtagtactga
      241 taatagctta aatatagcta aagaatatgc caaaaaagat gaaagaattt ttcttattgc
      301 aaaaggaaat ggtggcttaa gttcagctag aaatgcgggt ttggaattta taaaaggcac
      361 taaattaaga gatttttttg aaaatgaaga aaatattatt agttataaac aatcaaacac
      421 ttttaaaaat agtacaaaag aacttacaaa agaagaaata aataaaaact ttacaaaact
      481 tagtaaaaat ataatccaaa caaagcttaa aaatcttaat gactttatca ttcaagattt
      541 acctgataat attattcact ttttagattc cgatgattat ttagagcttg attgtattga
      601 aaaatgcgta aatgagatga gtaaagatga tatagatatt tgcacacata atattaaaga
      661 attccttgaa gaagagcaag tttttagaca aaaagcagag tgcgatattt atttaaattg
      721 taaatacact aaaaatatca gtgggattga tttttttaaa aaaaataata tttgtgagtt
      781 ttattttgct tggcaaggaa gctttagagc aaagttgtta aatatttata agcttcgttt
      841 tacttatggg atttatcacg aagatcatga ttttggaact atattattct taagtgctaa
      901 aaaaataact tgtgttaaag aagaattatt aatttataga attcgagcta attctataat
      961 aaaaagtgaa aaagaaaaga taataccaca aagcatacct ttttatttag aacctttaag
     1021 atattatttc gatgattatt ctaagcttag agcttatttt aaagcttatt gtatgtgtgt
     1081 aattggggtt aatattttgc ttttttgcaa agaaagtaat attttagaca aaaaaactcc
     1141 aaataaaata tttttacatt atattcatta ttatcttgag caatactatc ccttaaatta
     1201 tctcaatata aatgatttat ttactttagt gggtatcaat ttaaaacttt ttagatttaa
     1261 aattatgtta agattttatt ttcgccaccc aaaaaagatt tttaagaaaa acaatgccta
     1321 aaatttcaat catcttgcca acttttaatg tagaaaagta tatagccaaa gctttagaaa
     1381 gttgtatcaa tcaaagtttt aaagatatag aaataattgt agtggatgat tgtgggagtg
     1441 ataaaagtat agatatagct aaagaatatg ccaaaaaaga tgaaagaata aaaataattc
     1501 acaatgaaga aaatttgggt acttttgcag caagaaataa tggtgttaaa cattcaaatg
     1561 gtgagtattt gatgttttta gaccctgatg attttttaga gcttgaggct tgtgaaaaat
     1621 taatactttt aataaatact tataaaatat gccaattttc ttttactcag attagtaatg
     1681 gaattaaatt aaaatcagta tttaaagata cacttaaaaa tttaaaagaa tttaaaggaa
     1741 tttattgg
//
LOCUS       DAPIWV010000161         1665 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.163, whole genome shotgun sequence.
ACCESSION   DAPIWV010000161 DAPIWV010000000
VERSION     DAPIWV010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.163"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..255)
                     /locus_tag="RJ272_001704"
     CDS             complement(<1..255)
                     /locus_tag="RJ272_001704"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382747.1"
                     /translation="MLEMDNNKEFKILRLNKQEILKIGGYGICDSCNRRLSNDGYMIC
                     VLYSCYCEKCYKEWYKVAINHKEDREIEKDVYENIKSKITN"
     gene            complement(260..787)
                     /locus_tag="RJ272_001705"
     CDS             complement(260..787)
                     /locus_tag="RJ272_001705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382748.1"
                     /translation="MDKILFLRINRVVNILMLIFALFSTIAIALFLSYFIEEENYYAY
                     FVSSFFLVNGFLLTIHLIGEKKCAKEVDYDDNFISKLNNSLRKELEDDLLKLQEYYDG
                     INVLEYKTFALLKCNSYYEKGRINEELIDKIKKYYINLFKKKIAKELEEMQKEKERRN
                     ILKTNQELILKKIGE"
     gene            complement(814..1326)
                     /locus_tag="RJ272_001706"
     CDS             complement(814..1326)
                     /locus_tag="RJ272_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382749.1"
                     /translation="MKKITIVAYAICFLSGLWFLFSSVKDDFGILSFILGIALIYFGV
                     INIKRILNDSNENKTELETLFATANIIFVSISSIFLLMLIAFFTFQNEINIKFFSDQG
                     LVLKNDKKISIYLKGKEIKSFDENKYGFVMAVYGDKHIEVVLQNKENDTFFELRCNEE
                     GCKEILKEDK"
     gene            complement(1323..>1665)
                     /locus_tag="RJ272_001707"
     CDS             complement(1323..>1665)
                     /locus_tag="RJ272_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382750.1"
                     /translation="AIIALICIFKNEIWEFVKFIFSNLDFICGNFANFVGEDNIVFFP
                     ITTLLIVFTIAICAVWGLSNVLSLSLFIMPIFVAVFYIFNIDISLKNLYGSYFIFLII
                     INGLSWSVNQR"
BASE COUNT          630 a          264 c          142 g          629 t
ORIGIN      
        1 attagttatt ttcgatttaa tattttcata aacatctttt tcaatttctc tatcttcttt
       61 atggttaatt gcaactttat accattcttt gtagcatttt tcacaataac agctatataa
      121 aacacaaatc atatatccat cattgcttaa tcttctatta caactatcgc aaatgccata
      181 acctccaatt tttaaaattt cttgtttatt tagtcttaag attttaaatt ctttattatt
      241 atccatctct agcattttat tactctccta tctttttcaa gattagctct tgatttgttt
      301 ttaaaatatt tcttctctct ttctctttct gcatttcttc taattctttt gctattttct
      361 ttttaaaaag attaatgtaa tattttttga ttttatctat gagttcctca ttaattctgc
      421 ctttttcata ataagaatta cattttaaca aagcaaaagt tttgtattct aaaacattaa
      481 ttccatcata gtattcctga agctttaaaa gatcatcttc taattctttt ctcaaagagt
      541 tgttaagttt actgataaaa ttatcatcat aatccacttc ttttgcacac tttttttcac
      601 caattaaatg aatagttagc aaaaacccgt tcactagaaa aaaactagat acaaaataag
      661 catagtaatt ttcttcttct ataaaatagg ataaaaatag tgcaatagcg atagttgaaa
      721 acaaggcaaa aattaacata aggatattaa caacacgatt tattctcaaa aacaaaattt
      781 tatccacaat cttttttgac aaatttacta ctctcattta tcctccttta atatttcttt
      841 gcaaccttcc tcattacatc ttaactcaaa aaaggtatcg ttttctttgt tttgcaaaac
      901 aacttcaatg tgtttatcgc cataaacagc cattacaaat ccatatttgt tttcatcaaa
      961 gcttttaatc tcttttcctt ttaaataaat agaaatcttt ttatcatttt ttaatacaag
     1021 tccttgatcc gaaaagaatt taatatttat ttcattttga aaagtaaaaa aggcaataag
     1081 cattaaaaga aaaatagaac ttatcgatac aaaaataata tttgctgtag caaatagagt
     1141 ttcaagctcg gttttattct cgttagaatc attcaaaatt ctttttatat taataacacc
     1201 aaaataaata agtgcaattc caagaataaa agataagata ccaaaatcat ctttaacact
     1261 actaaataaa aaccataagc ctgataaaaa acatattgcg tatgctacta ttgtaatttt
     1321 tttcatcttt gatttacact ccatgaaaga ccattaataa tgattaaaaa tataaaataa
     1381 gagccataaa ggttttttaa acttatatca atattaaaaa tataaaaaac cgcgacaaat
     1441 ataggcatta taaataatga gagagataaa acattagata atccccaaac agcacaaata
     1501 gctatagtaa atactattaa aagagttgta attggaaaaa atactatatt atcttcgcct
     1561 acaaaatttg caaaattacc acatatgaaa tctaaattag aaaaaataaa ttttacaaat
     1621 tcccaaattt catttttaaa aatgcaaatt aaagcgataa ttgct
//
LOCUS       DAPIWV010000162         1617 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.164, whole genome shotgun sequence.
ACCESSION   DAPIWV010000162 DAPIWV010000000
VERSION     DAPIWV010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.164"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            2..940
                     /locus_tag="RJ272_001708"
     CDS             2..940
                     /locus_tag="RJ272_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDV7382751.1"
                     /translation="MKLKNTTISEDLERWIETYLKHIQALSYSNNTFLLYRRILLEFV
                     EYSLDYQDEMQINDIKTTFLVNFLNYLENNSKNGNKLSKKTKITYLRVLTSFFSFISD
                     NNDDLFVFSFDMKKIRFRTEKSGEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSL
                     LIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY
                     FKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLAMRLTAKG
                     TNLVVIQKILRHANLNTTTIYAKATNDTIKAALLNN"
     gene            complement(991..1413)
                     /locus_tag="RJ272_001709"
     CDS             complement(991..1413)
                     /locus_tag="RJ272_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382752.1"
                     /translation="MQSIKIGKYPTTTLSSAREKANIFNNMLTEKIDPKEQIQKEDIK
                     KSKTLIIHLNSYLEAENNLQKIKILVKIYQNLQKCSRTPDLIDIEELEFNKEDIFEEL
                     FYALGGLGGIYSVEMIQSRIANFIKILGGEPKLLLEQF"
BASE COUNT          604 a          179 c          224 g          610 t
ORIGIN      
        1 aatgaaactt aaaaatacta caataagcga agatttagag cgttggatag aaacttattt
       61 gaaacatatt caagcattat cctattcaaa taatactttt ttactttata ggcgtatttt
      121 actagaattt gtagaatatt ctttagatta tcaagatgaa atgcaaataa acgatataaa
      181 aacgactttt ttagtcaatt ttcttaatta tttagaaaat aattcaaaaa atggcaataa
      241 actatcaaaa aaaacaaaaa taacttattt gagagtatta actagctttt tttcttttat
      301 aagcgataat aatgatgatt tgtttgtttt ttcctttgat atgaagaaaa ttaggtttag
      361 aacagaaaaa tcaggagaaa aattaaatta tcttaatgaa aatgaaatta taaggctaaa
      421 taatgtttta gagaaagaaa aagcaaaaaa agaagtttat aatagtttta gaaactcttt
      481 actgataaaa cttatgcttt atggaggact tagaatttct gaagctttaa atgtaaaact
      541 ttgtgatttt gaagaggttg atgatgaaat attaaaaata tccataatag gcaagggcgg
      601 taaagaacaa tttgcattta ttaaaaaaga agaagtagat gatgagcttg aatattttaa
      661 agaaaatatc caagatagtg attacataat gcaaactagc acaggaaaac atttaaatag
      721 aagtaatgct tttttgattg taaataatat ttacgctaaa gctttgatca gcaaaaaagg
      781 acttcatttg cttagacaca ctttagccat gagattaaca gccaaaggaa caaaccttgt
      841 ggtcatacaa aaaattctaa gacatgcaaa tctaaatact actactatat atgccaaagc
      901 aacaaatgat acaataaaag ctgcgttatt gaataattaa tttttctaaa attgagtatt
      961 tgcatagact tcaagaagaa gtctatgtgt ttaaaattgt tctaataaaa gtttaggttc
     1021 tccgccaagt attttgatga aatttgcaat tctagattgt atcatttcta cggaatatat
     1081 acctcctaaa ccgcctaaag cataaaataa ttcttcgaaa atgtcttctt tgttaaattc
     1141 aagttcttct atatcaataa gatcaggagt tcggctacat ttttgtaaat tttgatatat
     1201 tttgactaaa atcttgattt tttgtagatt attttcagcc tctaaataag aatttaagtg
     1261 tattattagg gtttttgatt tttttatatc ttctttttga atttgttcct tgggatcaat
     1321 tttttcagtt aacatattat taaaaatatt tgctttttct cttgcgcttg acagtgtggt
     1381 tgttgggtat tttcctattt taatactttg tatttttttg tttaacctat atctaaaata
     1441 aaaaaaagat aatagtacct tttagcgaat cttttgcttc gatgtagaga ttttttgtgt
     1501 atgcatcttt aatatatgtt ctttttttac aattaaagtt ttaagttgct tatcattaac
     1561 aataatcatt tttaatattc ctatgttaaa aagtatatgt tatttttgaa ttttaaa
//
LOCUS       DAPIWV010000163         1470 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.165, whole genome shotgun sequence.
ACCESSION   DAPIWV010000163 DAPIWV010000000
VERSION     DAPIWV010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.165"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..905)
                     /locus_tag="RJ272_001710"
     CDS             complement(<1..905)
                     /locus_tag="RJ272_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7382753.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGGFTNQEFQIGSSSNQTIKAS
                     IGATQSSKIGVTRFETGSQSFSSGTVGLTIKNYNGIEDFKFDSVVISTSVGTGLGALA
                     EEINRNADKTGIRATFDVKSVGAYAIKAGNTSQDFAINGVVIGQINYNDGDNNGQLIS
                     AINAVKDTTGIEASKDENGKLVLTS"
     gene            complement(1066..>1470)
                     /locus_tag="RJ272_001711"
     CDS             complement(1066..>1470)
                     /locus_tag="RJ272_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7382754.1"
                     /translation="SSTYVVSAGSGFSAGSGNSQFAALRISTVSAHDETAGVTTLKGA
                     MAVMDIAETAITNLDQIRADIGSVQNQITSTINNITVTQVNVKSAESQIRDVDFASES
                     ANYSKANILAQSGSYAMAQANSSQQNVLRLLQ"
BASE COUNT          435 a          277 c          246 g          512 t
ORIGIN      
        1 cttgaagtaa gaacaagttt accattttca tctttagagg cttcaatacc agttgtatct
       61 tttacagcat tgatagctga gataagttga ccattgttat caccgtcatt ataatttatt
      121 tgtccgataa caaccccatt gatagcaaaa tcctgagaag tatttcctgc ttttattgca
      181 taggctccta cagattttac atcaaaagtt gcacgaattc ctgttttatc tgcatttctg
      241 ttgatctctt cagccaaagc tccaagacct gttcctactg aagtagaaat cactacacta
      301 tcaaatttaa aatcttcgat accgttgtag tttttaatag taagtcctac agtgcctgaa
      361 gaaaaacttt gtgaacctgt ttcaaatctt gttacaccga ttttagaaga ctgagttgct
      421 cctatacttg ctttaatagt ttgatttgaa cttgaaccga tttggaattc ttgattggta
      481 aaaccaccac ttaaaagttg tttgccatta aatgaagtgg tatttgcgat attatcaagt
      541 tcttccatca aacggttgat gtctgcttga agcatagttc ttgtttttaa gctttgacca
      601 tcttgagcag cttgagtcgc tttagtcttg atggtatcta agattttaag ttgctcatcc
      661 atagccttat ctgcagtttg caagatacct atagcatcat taccattgtt tatagcttga
      721 cctaaagttg ctgcttgtga acgcaaagaa tctgctatcg ccatccctga agcatcatct
      781 gctgcggagt tgattctaag acctgaactg agtctactta aagacttgtc aagctctcta
      841 gcattaacaa ctgaatttgc atgtgcgttc aatgcaccga tgttggtgtt tattctaaaa
      901 cccattttaa atcctttcaa aatattgcat cgaaaagatt aaagcaagaa gtgttccaag
      961 ttttgattca aattgaaatt ttatttagaa ataaaaaaag cctagtatta ctactaggct
     1021 tggatttgta taaattacag taaacgctaa agaatgtttt atatactact gtagtaatct
     1081 taaaacattt tgctggcttg aatttgcttg agccatagca taagaaccac tttgagccaa
     1141 tatatttgct ttagagtaat ttgcactctc gcttgcaaaa tctacatctc tgatttgtga
     1201 ttctgctgat ttaacattta cctgggttac agtaatgttg tttatagtcg atgtgatttg
     1261 attttgcaca gaacctatat ctgctctgat ttgatcaaga ttggtaatag cagtttctgc
     1321 tatatccatc acagccattg cacccttaag tgtagttaca cctgcagttt catcatgagc
     1381 acttactgta cttattctta aagctgcaaa ttgagaatta cctgaaccag cagagaaacc
     1441 tgaaccagca gaaacaacat aggtgctact
//
LOCUS       DAPIWV010000164         1459 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.166, whole genome shotgun sequence.
ACCESSION   DAPIWV010000164 DAPIWV010000000
VERSION     DAPIWV010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.166"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..868)
                     /gene="selD"
                     /locus_tag="RJ272_001712"
     CDS             complement(<1..868)
                     /gene="selD"
                     /locus_tag="RJ272_001712"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(818..820),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDV7382755.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGIGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKL"
     gene            complement(878..1450)
                     /gene="yedF"
                     /locus_tag="RJ272_001713"
     CDS             complement(878..1450)
                     /gene="yedF"
                     /locus_tag="RJ272_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7382756.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLTPVVDENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
BASE COUNT          486 a          249 c          181 g          543 t
ORIGIN      
        1 ataatttttc ttcatttaaa tcaggggtaa gttcttttat aaattctaaa tttttataag
       61 ctccagcagg aattaaaccc atattaaaat actcttttac tccatctaaa aaaggaagtt
      121 cactttcaaa aatttcaaaa gaaatatttt tatttagcat ttcttttaaa tgtcctaaaa
      181 gtccaaaacc tgtaacatca ctcatggcac ttggatgaaa tttaagagca atttgactgg
      241 ctttataatt taactccatc atgtttttaa gcattatatc taaatgtttt tgatttaaca
      301 tttgcgcctt taaagctgta cttaaaattc ctattcctaa aggcttggtt aaaatgatac
      361 aatctccgat tttagaagta ttattagcaa taaatttact aggatgtact tttcctgtaa
      421 cactaagtcc aaaaaaaagc tcggtgcttt ctatagtatg gccacccacg actaaagcat
      481 tacattcttt aactttatca tttgcacctt ctaaaagctc ttttaagatg tttaaatcat
      541 gattacaagt atcaaaacct actatattta aggcattaat tacctctgca cccatagcaa
      601 aaacatcgct taaagcattt gctgcagcaa tagcaccaaa atgataagca ctatctacta
      661 taggagtgat aaaatcaagc gtttgcacca aagctaaatc ggggctgatt tgatatacgc
      721 ttgcatcttc attatttccg atatcactaa gtaaagcagg agttttttgc atgaaattta
      781 aaattgtttt aagaccaccc gggcttaatt tcgctgctca gcctgctgct ttaacaaaat
      841 gcgttaaatt ttgattttta tattgcagtg tttttcctta tagagtaatg atttttgctt
      901 taccaaaaag ctcgtttaaa atttcataag cattgcctat atttcctatt ttaagttctt
      961 tgcttttatt aaaaaattct agacaagctc cacaacttat gatctcaata cctaaatttt
     1021 caagttcttt catagctaaa tgtgctttat gattttcatc aacattgatt aaaacacttt
     1081 catttacgca aagaatttta cttggagcat gatctaaatt ttttaaggta cttaaaaatc
     1141 ctacaagtaa attttgtccc aattcaccct cgcccacttt gtcggttttt aaaaataaaa
     1201 cattataatc gtgaatattt acttcactag aatcaaaatt ctttttttgt actttgatgc
     1261 aaaactcttg tgcattttca tctacaacag gggttaaatt taaagagtta agaaatttta
     1321 caacattatt ttttgaaata atagaattta aaacaatttc taaaatttca ttttcttgaa
     1381 gtttttcaag agcgtttttt gtttcaacta taggctgagg acaagataga ttgcgacaat
     1441 caattttcat tatttttcc
//
LOCUS       DAPIWV010000165         1458 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.167, whole genome shotgun sequence.
ACCESSION   DAPIWV010000165 DAPIWV010000000
VERSION     DAPIWV010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.167"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(182..>1458)
                     /locus_tag="RJ272_001714"
     CDS             complement(182..>1458)
                     /locus_tag="RJ272_001714"
                     /inference="COORDINATES: protein motif:HMM:NF019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7382757.1"
                     /translation="IIKKYPVSFRGGGYQINMNTFKALEYSGFKYDSSAFVSYKQDMI
                     YKSINKVVQYGNIIEFPVSTNFLFNYPMKLDLNTQGNARDMLDIMSSHRFNGLENIVI
                     MLHSFSFIKWYKGNDDKLKSKLKFTGNRYAIGVNNNLINEFELFCKSISDNEEFENAL
                     FENLTLAEIESSLANEKDFVPKDIIKYSNEKSTCPICENNVSFQEYRNRKNAICPKCR
                     SLERMRFKYLYLKRFLHINTMKNKNILHIGPAMCVYNKLRSLNQINYITSDPFSDSIY
                     NYPLENIPFADGYFDIIICVGILIHVLDDDKCLREMHRLLSKNGKLILWVGDLYNDKT
                     VERYNRADFDKMKAISFDYPDNLSDGKTILLDDGSIGYNPRYSTRTYGKDFVDKLKNM
                     GYDADIIKSQDIAGYKKYGLREDDVLIIGSRI"
BASE COUNT          531 a          245 c          115 g          567 t
ORIGIN      
        1 tcccttgttt taataaaaaa ataagccaaa tctaatacat actccatctt atgcaatata
       61 aaaatataac ctgtatgatc atatggatta tatgtccaat ctataatgtt aaaatttatg
      121 tcttcataat catataatct taaaatttta tttttaatta aatattgtaa atcatcttca
      181 ctcatattct acttcctata attaaaacat cgtcttctct taatccatat tttttatatc
      241 cagctatatc ttgagatttt ataatgtctg catcataacc catattcttt aacttatcta
      301 caaaatcttt accataagtt ctagtcgaat accttggatt ataacctatg cttccatcat
      361 ctaacaatat tgtctttcca tctgacaagt tatcaggata atcaaaactt attgctttca
      421 tcttatcaaa atcagctcta ttataccttt caacagtttt atcattatat aaatctccaa
      481 cccaaagtat taattttcca tttttagata ataatctatg catctctctt aaacatttat
      541 catcatctaa tacatgaatt aaaataccta cacatataat aatatcaaaa tacccatctg
      601 caaatggaat attttccaat ggataattat atatagaatc agaaaatgga tcagaagtta
      661 tatagttaat ttgatttaac gatcttaact tattatatac acacatagca ggacctatgt
      721 gtaaaatatt tttatttttc atagtattta tatgtaaaaa tctttttaaa tacagatatt
      781 taaatctcat tctttctaaa gatctacatt ttggacaaat agcgtttttt ctatttctat
      841 attcttgaaa agagacatta ttctcacata taggacaagt actcttctca ttactatatt
      901 ttatgatatc ttttggaaca aaatcttttt catttgccaa ggaactttca atttctgcta
      961 aagttaaatt ttcaaacagt gcattttcaa actcttcatt atctgaaata cttttacaaa
     1021 ataactcgaa ttcattaatt aaattattat taacacctat tgcatatcta ttacccgtaa
     1081 atttcaattt tgattttaac ttatcatcat ttcctttata ccattttata aaagaaaaag
     1141 aatgcaacat tatcactata ttctcaaggc cattgaatct atgtgaactc attatgtcta
     1201 acatatctct tgcatttcct tgagtattta aatccaattt cataggataa ttaaataaaa
     1261 aatttgtaga tactggaaat tcgataatat taccatattg caccacttta ttaatagact
     1321 tataaatcat atcctgttta taagacacaa aagcagatga atcatattta aaaccactat
     1381 attccaatgc tttaaaagta ttcatattaa tttgataacc accccctcta aacgaaacag
     1441 gatatttttt aataatat
//
LOCUS       DAPIWV010000166         1333 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.168, whole genome shotgun sequence.
ACCESSION   DAPIWV010000166 DAPIWV010000000
VERSION     DAPIWV010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.168"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..733
                     /locus_tag="RJ272_001715"
     CDS             <1..733
                     /locus_tag="RJ272_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HDV7382758.1"
                     /translation="LNHNFTSFVLLDKVDFNFSELKSILEDKFNIKIADENFTKEGVI
                     FSYENMLVTLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKL
                     EQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYP
                     SENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFYIYDIVLHILTYDINLKDKDILKF
                     EDGKEIKFIKSQGISVENESLKIIF"
     gene            797..1213
                     /locus_tag="RJ272_001716"
     CDS             797..1213
                     /locus_tag="RJ272_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7382759.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQSNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          508 a          144 c          211 g          470 t
ORIGIN      
        1 tttaaatcac aattttacct cttttgttct tcttgataaa gttgatttta atttttcgga
       61 gttaaaaagc attttagaag ataaatttaa tataaaaata gctgatgaaa attttaccaa
      121 agagggcgtg attttttcat atgaaaatat gttagttact ctaaatttga ttaaaaatcc
      181 tatacctaat cacgaagcag aatactatgc aaattttaat tttatgtgga aagatgcctt
      241 agagcaaact aaaaaacata aagctcatct tcttatagcg gtgctaagtc aagatcaaag
      301 caaattagaa caagctaaaa tgtttacgaa aattgcagct ttatgtttgg ataataaaca
      361 tgctttaggt ttttatacag gtgcagttgt tttagagccc agtttttata tagaaaatgc
      421 aaaaatgtta gatgataatc gcttgccggt atataattgg atatatgtta gtgtttatcc
      481 tagtgaaaat ggagttaatg cttatactta tgggcttaga aattttgata aattagaact
      541 tgaagtttgt gatttaaaca tagaagaaaa agaacttttc ttttatattt atgatattgt
      601 tttgcatatt ttaacttatg atattaatct aaaagataaa gatattttaa aatttgaaga
      661 tggaaaagaa ataaaattta taaaaagtca aggtataagt gttgagaatg aaagcttgaa
      721 aattattttt taagtttcac attcacttca cagttttgag ttaaactttc gccaaccaag
      781 aaaaaaagga gaaattatga aagcaaaact aactttactt gctttgttgg gtactacggt
      841 gcttttagct aaagatatgg ttgttcctgc tagcgaactt ccaaataatg ccaaagaatt
      901 tatttctaaa aattttaaaa ccgctcaaat tggtttggtg aaaaaagata tagattctta
      961 tgatgtgatt ttaaatgatg gaactgaaat tgattttatg atcaatggag agtggaaaga
     1021 agttgatgga aaatataagg ctttgccaca tactatctta cctaatgtta tgaaaaaagt
     1081 gagtgcaact caatcaaatg ctcaaattct tgaagtagac aaagaaatta atggttataa
     1141 atttaagttt aataacaata tggaagttta tacagatatg caaggaaata tcctaggtca
     1201 aaaattagat taatttttga aaatttaact cccttagaaa atttgatgca aaaatttgga
     1261 agcatagtct tccaaatttt tattttttga ttgcaaaacc caaaatatat ttagttttaa
     1321 aataatactt tat
//
LOCUS       DAPIWV010000167         1270 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.169, whole genome shotgun sequence.
ACCESSION   DAPIWV010000167 DAPIWV010000000
VERSION     DAPIWV010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1270
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.169"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            215..1127
                     /gene="dcuC"
                     /locus_tag="RJ272_001717"
                     /pseudo
     CDS             215..1127
                     /gene="dcuC"
                     /locus_tag="RJ272_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT          398 a          175 c          203 g          494 t
ORIGIN      
        1 aaaaatttag ataaaatcca atttattgta aattcaatag accctatgct aatttttatg
       61 atatactcaa aaaaatacga tcccattttt gtatttttct ttcaaatatt atcttgctta
      121 tttttgcttt ttatatcaca ggaacaccta taccaaaagc tccaagcaga gagtatacaa
      181 gcttttaaat gttttacttg atagttatgc ttttatcaca gcgactttta aaagtcagct
      241 ttctggagta ggacttatta tcatgagtgt ggcaggtttt gctgcttata tgaaacatat
      301 taatgcttca gcaaaacttg cttttttagc aaataaaccc ttaggaaaaa tcaaaaataa
      361 atacttgatt ttaagtggaa cttttgttgt tggaatggct ttaaaaatcg tcatttctag
      421 ctatgctgga ttgcttttgc ttttgttagc atgtatttat cctgttttaa tctcacttaa
      481 aatccgtcct attacaactg tatgtgcgct ttctttaatt gcacttgatt atggtccaaa
      541 agatggaaat tcaatcaata tggcagatat ggtaggacaa agtgataatg tcgtagggct
      601 ttttttaaat taccaaattt atagtgtgat tgcctatgtt gtagttattg ccatcttgat
      661 tcctttttat tttgcttgga ttgataaaag agataaagaa aaaggtgttt taaatgatga
      721 agttgaaatt ccgcaaatca ttgatcctaa atgtcctact ttttacatac tctttccttg
      781 gttacctgtt gtatttttat ttacagcgta tttttttact atcaagctcg atgttgtaac
      841 agcaaatttt gtaagcattt ctttagtttt tcttgttgaa tttgcaagac acagaaatgc
      901 tagaaaatta ggcgaagata tgatggtgat tttaaaagac tatggctgaa atttttatct
      961 tagtcgtaag cataatcatc gccgctggag tatgtgctaa aggcattaaa gcacttggtg
     1021 gagttaatat ccttactaac gcggtttcaa atcttggaac aggaaatttt gcatggtttg
     1081 gaattctttt gagtatagct attttaagct ttttagttta ttttgccaat gctatattga
     1141 ataggatttg catcaaaatt taaaagtata aatattgaag aaagtttttt gcaagttcta
     1201 tccaaatctt ttgtgaaaaa atcaaaccct ctatatttac tattaatttg aaaaagtatt
     1261 aatatttata
//
LOCUS       DAPIWV010000168         1250 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.170, whole genome shotgun sequence.
ACCESSION   DAPIWV010000168 DAPIWV010000000
VERSION     DAPIWV010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.170"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            43..>1250
                     /locus_tag="RJ272_001718"
     CDS             43..>1250
                     /locus_tag="RJ272_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HDV7382760.1"
                     /translation="MFRLSSVSSKLLLSVAISVILAIALMIAIVSFQVASYSEKEAKD
                     TILLSSKRYVNYIQGMLNEEVTLTKGVATSLNEMFQNNDHIDIDLIESLIKNTFDSSH
                     YAAYTFLYLKDTTVLSDMQNVDKKYISPDGKTFSMIFFDQIAEKSGGITTISTPNNFS
                     QLNLIQNIEQNAKYGDKDSVFVDSPRKLNYDNNEFLGINFGMPIFNNKGKFIGVIGYT
                     IDLLEISETILDPKFDFFEGDLRFLMNDQGIIAIHKNKNAILKTLFDINKDQSAQLIV
                     EAVKNHKDEILDNYIASTGDLSYASISSFSTLGNSSHWSVIVTAPKKSVLAPLYKLQY
                     IIISVAIIALIAILAVVYFFIRKIIGSRIPLILKSLENFFRFLNHEKIEVQTIEIKAN
                     DELGKMGKII"
BASE COUNT          460 a          156 c          181 g          453 t
ORIGIN      
        1 aacgagcttt atttttagta aaaaatttat gtgaggtttt tcatgtttag actatcgagc
       61 gttagttcaa aactcttatt atcagttgct attagtgtta ttttagctat agctcttatg
      121 attgctattg tttcttttca agttgcttca tattcagaaa aagaagccaa agatactatt
      181 ttattatctt caaaaagata tgtgaattat atacaaggta tgttaaatga agaagtcaca
      241 ctaaccaaag gagttgctac atcgttaaat gaaatgtttc aaaataatga tcatatagat
      301 atcgatttaa ttgaaagtct tataaaaaat acttttgata gtagtcacta tgcagcatat
      361 acatttctct atttaaaaga tactactgta ttaagtgata tgcagaatgt agataaaaaa
      421 tatattagcc cagatggaaa aactttttct atgatatttt ttgatcaaat agcagaaaaa
      481 tctggtggaa taactactat ttcaactcca aacaatttct ctcaattaaa tctaatacaa
      541 aatatcgaac aaaatgcaaa atatggagat aaagactctg tttttgtaga ttctcctaga
      601 aaacttaatt atgataataa tgaattttta ggtataaatt tcggtatgcc tatttttaac
      661 aataagggca aatttattgg agttatagga tatactatag atttactaga aatttccgag
      721 actatattgg atccaaaatt cgactttttt gaaggggatc taagattctt aatgaacgat
      781 cagggtatta ttgctattca taaaaataaa aatgcaattt taaaaacttt atttgatatt
      841 aacaaagatc aatctgctca attaattgtt gaggcagtta aaaaccataa agatgaaatc
      901 ttagataatt atattgcctc aacaggagat cttagttatg ctagtatctc ttcatttagc
      961 actttaggta attctagtca ttggagtgta attgtaacag ctcctaaaaa atcagtttta
     1021 gcccctttat ataaactaca atatattatt attagtgttg ctataatagc actaattgct
     1081 attttggctg ttgtgtactt ttttataaga aaaatcatag gctctagaat tcctcttata
     1141 cttaagtctt tggaaaattt ctttcgcttt ttaaatcatg aaaaaataga agttcagaca
     1201 attgaaatta aagctaatga tgaattgggc aaaatgggta aaattatcaa
//
LOCUS       DAPIWV010000169         1239 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.171, whole genome shotgun sequence.
ACCESSION   DAPIWV010000169 DAPIWV010000000
VERSION     DAPIWV010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.171"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            2..940
                     /gene="rsmH"
                     /locus_tag="RJ272_001719"
     CDS             2..940
                     /gene="rsmH"
                     /locus_tag="RJ272_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDV7382761.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISLKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLGHLENLKPKNCILAIISFHSLEDRIVKKFFKKWSKNCICDEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            940..>1239
                     /locus_tag="RJ272_001720"
     CDS             940..>1239
                     /locus_tag="RJ272_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382762.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHAKKSNIYLKEDLINVKLEEKQSLAKKIFSKMK"
BASE COUNT          504 a          158 c          191 g          386 t
ORIGIN      
        1 attgattttg gaaattcctc atatcccagt tttgcttaat gaagttcaag agatttttaa
       61 aaatcttaaa acaggttatt ttttagactg cactttagga tttggcggac atagtgaagc
      121 tttgcttaaa aatcatcctg atcttaaatt cattgcttgt gatcaagatc aacaagcttt
      181 agaattttct aaaaaacgtc ttaaagattt tcgcaatagg ataactttta tgcaaagtaa
      241 ttttagtgaa gttttagaaa aaatttcact aaaagaagaa ttaagaggta ttttagcaga
      301 cattggagtt tcttcatttc agcttgataa taacgaaaga ggttttagtg taaattctga
      361 ctttttggat atgagaatga atcaaaactc caaaatatcg gcttatgaga ttattaatac
      421 ttatacaaaa gagcaattaa cttccatttt taaagattat ggagaattac atgatgcaca
      481 ttttattgct gaaaaaattt gcctagaaag aagtaaaaat ccaatcaaaa gtgccaaaga
      541 gctttatcaa atcataggaa aaggtaaaca aaatcataga aaaatttcca aagctacttt
      601 agcatttcaa gccattagaa tagaagtaaa tcaagaactt aaagtgctta aagattttct
      661 tgggcattta gaaaatttaa aaccaaaaaa ttgcatttta gcaatcatta gttttcattc
      721 tttagaagat agaatagtaa aaaaattttt caaaaaatgg tcaaaaaact gcatttgtga
      781 tgaaaaaata atgcgttgcg aatgtggaaa taaccatagc ctagggcaaa taataaccaa
      841 aaaagctata agtgcaagca aggaagaact tttaaaaaat tctcgctcta gttgtgctaa
      901 aatgcgggct ttttatttta ataatttgga caataaataa tgctagaaga tgattttata
      961 aaagaacgcc aaaacatacg ccaaaaaatg ctgaaatttt ctcgcgccat aaatcaaggc
     1021 aaaccgcttg atgatgattt aagagatgaa atttctagcg atgatatttt aagacgtcgt
     1081 tttaaaaaaa agactcctaa taaattctta gaagaacttg atgaagagta tgagtcaaaa
     1141 catgctaaaa aatcaaatat atatttaaaa gaagatctaa tcaatgttaa attagaagaa
     1201 aagcaatctc ttgctaaaaa aattttttcc aaaatgaaa
//
LOCUS       DAPIWV010000170         1198 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.172, whole genome shotgun sequence.
ACCESSION   DAPIWV010000170 DAPIWV010000000
VERSION     DAPIWV010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.172"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..323
                     /locus_tag="RJ272_001721"
     CDS             <1..323
                     /locus_tag="RJ272_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDV7382763.1"
                     /translation="LGHQCIAEIFGGRVSKMQNPMHGKISKLYFKKDPIFKGIKKEIE
                     ICLYHSLHISSMSEKCKILAHNSENIIMAIKHKKYPIYGLQFHPEAVLTQKGKKILKN
                     FMKL"
     gene            complement(310..1182)
                     /locus_tag="RJ272_001722"
     CDS             complement(310..1182)
                     /locus_tag="RJ272_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7382764.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKVS"
BASE COUNT          517 a          220 c          127 g          334 t
ORIGIN      
        1 gtttaggaca tcagtgtata gctgaaattt ttggcggtag ggtttctaaa atgcaaaatc
       61 ccatgcatgg taaaatttct aaactttatt ttaaaaaaga tcctattttt aagggtatta
      121 aaaaagaaat tgaaatttgc ttatatcatt ctttacacat tagttccatg tctgaaaaat
      181 gcaaaatttt agctcataat tcagaaaata ttattatggc aattaaacat aaaaaatatc
      241 ctatttatgg attgcaattt caccccgaag cggttttaac tcaaaaaggc aaaaaaatac
      301 ttaaaaactt tatgaaactt tagtcttttt tgcatttaaa ataacactca atataatcaa
      361 aacaaaagca aaaatatcaa gcaagctata acgggttttt aaaaataaaa aactcatcaa
      421 agcagctgct acaggctcta tagaggcaat catactagcc cttagagcac ctatatattc
      481 cactcctttt aaatacaaac aaaaagcccc tatagttccg ataaagacaa tcccgcccat
      541 agaaaaaaat gcttttaagt taaaagcata gtgaattaaa cccttatcaa attgcaagat
      601 taataaaaat acaaaagaag caaaaagact cgcccagccc attatccaaa aaagaccata
      661 ttttaatatc acttctctag cacttaaaga ataaaaagca actccaaaag ctcctataac
      721 agcccaaaaa ataccccaat aatttaaaac caccgcttca atatctcctt tagttgcaag
      781 caaaaacaaa gcaaaaataa tcaaaatcaa agcaaaaatt tctatcaatt taggaaattt
      841 tttattttta aagcacaaat aaagcattat aatcaaaggt gcacaatatt gtatcattgt
      901 tgcagttcca gcatcggtat aataaatagc cttaaaataa ccaaattgtg ttagcaaaag
      961 cccaaaaaat ccaaacatac aaatacttaa gctttctttt aaatttgtaa aaactaaaat
     1021 cttttgagct ttaaaactta aaaaaatcaa aatcaaccct gtagataaaa gcctataaaa
     1081 acaaacccaa tctacgctat aattattttt aaaaaggtat tcagctaaaa caccgctaat
     1141 agcccaaaaa atacctccca aaagaactaa aaatacgccc attgcaaacc ttaataaa
//
LOCUS       DAPIWV010000171         1138 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.173, whole genome shotgun sequence.
ACCESSION   DAPIWV010000171 DAPIWV010000000
VERSION     DAPIWV010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.173"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(22..1119)
                     /locus_tag="RJ272_001723"
     CDS             complement(22..1119)
                     /locus_tag="RJ272_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HDV7382765.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLVFGGYFLTLAFKGILW"
BASE COUNT          459 a          230 c          143 g          306 t
ORIGIN      
        1 taaaataaaa aataattttt attaccaaag tataccttta aaagctaagg ttaaaaaata
       61 tcctccaaaa accaaaacaa gccctaaaac aaaagccaag ccaaataccc tagagccact
      121 ttttaaaaat tttttaaagt caatttgcaa gcctaaagct gccatagcaa aaacgataca
      181 taaagtacaa agtgttttac ctaaagagat gatatcactc gtagcaatac ctaaaatact
      241 ttctttgctt gctaaataag tatttaaaac tatcatgcct aaaaatgcaa aagcaaaata
      301 aggtatagtg atactttttg cagtttttcc actgcttgaa tgttgatttt tagcgaaaaa
      361 ataagtcact ataagcaaaa aaggcacaag taaaatcact ctcatcattt ttataatcac
      421 tgcaacatta gaagcacctt gctcaaatcc tgccatatcc tttgccattt cagcagcacc
      481 tgcgacattt gccacctcat gcaacgtagc tcccataaaa acacccatag cattttgatc
      541 aaaaaaagga aaaagattta aagaaaaagc tatgggatat aagaacataa atacaagtcc
      601 aaaaatcacc accgtaccta cagctaaaat tcccttaaaa ggatcacttt tcaaacttga
      661 ctctagtgct aaaaccgctg ccgcaccgca aatcgcactt ccagctccaa caagcataga
      721 agtttcttta tcgagtttaa aaattttcgt tcccacaaat aaagcaataa taaaaacaaa
      781 aaatatcact atagcagaaa gcaaaaatcc tttcaatcct acgcttaaaa gctcagttaa
      841 agtgatatta aaaccatata aaacaatgcc aagtcttaaa agttttttcg cactaaaatg
      901 cactccggct tgaaaatgat gttggtattt aaaaaaccaa ggagaaagca acactcctat
      961 gataatagca aaagcagtcg ctgctaaatg agtggtatct ttgatacttt gaacactaga
     1021 aagatacata gcaaaaatca ctatacaagc agtaaaaagc aaacccttaa aatttgatcg
     1081 cactatagcc acgctatgtg ctaaaaaact tgttttcatt tattttcctt tttgtaaa
//
LOCUS       DAPIWV010000172         1133 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.174, whole genome shotgun sequence.
ACCESSION   DAPIWV010000172 DAPIWV010000000
VERSION     DAPIWV010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.174"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            49..1095
                     /locus_tag="RJ272_001724"
     CDS             49..1095
                     /locus_tag="RJ272_001724"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HDV7382766.1"
                     /translation="MKKLLLCVLVFLSIGACMAEAKPKIAILATGGTIAGFIDSTIAT
                     TGYTAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEG
                     IDGVVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVA
                     NKEAKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTK
                     AHTKNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKN
                     QKDVLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTK
                     TSDPKKIQEYFLKY"
BASE COUNT          392 a          137 c          238 g          366 t
ORIGIN      
        1 tataagtttc attaatgaaa cgaattttaa caaaataagg ggagaattgt gaaaaagtta
       61 ctattgtgtg tattagtatt tttatctata ggagcatgta tggcagaagc taaaccaaag
      121 attgctattt tagcaacagg tggaacgata gcaggcttca ttgatagcac tattgctaca
      181 acaggatata cggccggagc cattgatata gatgtattaa ttaaagcagt tccgcaaatt
      241 agagatttag cagatattag ttgggagcaa atagcaaata ttgatagttc aaatatgtgt
      301 gatgaaattt ggttaaggct tgctaaaaaa attgctaagc tttttgctga ggggatagac
      361 ggtgtggtga taactcatgg tactgatact atggaagaaa ctgcttattt tttaaattta
      421 accattaaaa gtgataagcc cgtagttcta gttggcgcta tgcgtccatc aactgctata
      481 agtgcggatg gtccgaaaaa tctttataat gcagtggcat tagttgccaa taaagaagct
      541 aagaataagg gtgttatggt agctataaat gataaaattt taagcgctag aggcgtagta
      601 aaaactcata gtttaaatgt tgatgctttc tcttctcctg attttgggga tttgggttat
      661 atagtagatg gtaaagtctt tttctataat aatgttacta aagctcacac aaaaaacgct
      721 ccttttgatg taagcaaact cacaagtttg ccaaaagtag atattcttta tagctattca
      781 aatgatggta gtggtgtcgc tgcaaaagct ttatttgaac atggaactaa gggcatagtt
      841 gttgcaggaa gtggagcagg aagtatacac aaaaatcaaa aagatgtttt aaaagagctt
      901 ttaaaaaaag ggcttaaggt tgttgtaagt tcaagggttg tagcaggttg tgttgctgtg
      961 agtgattcag atgaaaaatt aggttttatt agtgctgaag atttaaatcc tcaaaaagca
     1021 agagttttgc ttatattagc acttacaaaa acaagtgatc ctaaaaaaat tcaagagtat
     1081 tttttaaaat attaaaattt tttaaatatt tctaaactta gggaacttat ctt
//
LOCUS       DAPIWV010000173         1124 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.175, whole genome shotgun sequence.
ACCESSION   DAPIWV010000173 DAPIWV010000000
VERSION     DAPIWV010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.175"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            107..>1124
                     /locus_tag="RJ272_001725"
     CDS             107..>1124
                     /locus_tag="RJ272_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7382767.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKN"
BASE COUNT          492 a          136 c          155 g          341 t
ORIGIN      
        1 taaatgaaga taagatgatt aaagtatatg aagattctta tttgaaagaa aaatttccta
       61 atgtaatggt agataaattt ttaaaataat tttttttgaa ggaaaagtga tgtcaaattt
      121 agctccgcaa aatgatgttt taaatcttac gccgagtaaa acttctacta ctagcagttc
      181 ttttagtaaa actagtaaaa ataaagaaca tgaaagtagt gatagtaaaa attcaactca
      241 agatgatacg gaaagttttt taaattcttt gcttaattct atcaatgaaa ccaatgaatt
      301 tttacctgat catatgaaga tcagtcaaaa agaagttgtt aatgaagcga tgagcagact
      361 tcaaaaagga gcttttgatg agagcgataa gataagcatt ttcgaatctg cttcttttat
      421 gcaaattctt tctttgttag ataagctaaa aacagataca gcagatgtta aactagcaaa
      481 tctttctact caactttcaa gtcttattaa aacagaggct aattttaatg ctttaaaagg
      541 tgcatcaaat cttagtgagc ttttggacat agctaaagat ctgggcttaa atgtaaaaaa
      601 tattaaagta gatcgtcttc ttgatcttaa agcaactttt ccaaatttag ataaggctga
      661 tttttttaag ggtgctgtgg ataatgtttt taaagaaatc atcaataata aaatttccaa
      721 tgtgagtaaa aatttaaatc acaatttaga aaatacaact catactacaa gcactcattc
      781 tatgcaaaaa acaaattcta aagatagcgg ttctttgctt tctcaaactt taaaaaattt
      841 agattccata ctttcatcca aagaaagcaa acacgaaaaa aacgataaag ttaaatcaaa
      901 aatagaagaa gataccacag atgctaaaaa tactttaaaa aatatcaaaa atgatgagtt
      961 tgcaaaaaat ttaacagaag agttaaatat aaaagataaa aaaaaccaag ataatttaaa
     1021 taaagaaagc aaagacttaa acaaagattt taataaagag ttaaataaaa atcaagaaaa
     1081 aaacaattta aatcaagaaa atatacaaga tcaaaataaa aatt
//
LOCUS       DAPIWV010000174         1124 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.176, whole genome shotgun sequence.
ACCESSION   DAPIWV010000174 DAPIWV010000000
VERSION     DAPIWV010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.176"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..220)
                     /locus_tag="RJ272_001726"
     CDS             complement(<1..220)
                     /locus_tag="RJ272_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382768.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIVLNGKS"
     gene            complement(249..836)
                     /locus_tag="RJ272_001727"
     CDS             complement(249..836)
                     /locus_tag="RJ272_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDV7382769.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSHVKGVTIGYGHLIGQNEWDLYKNG
                     ITLREADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
BASE COUNT          361 a          178 c          131 g          454 t
ORIGIN      
        1 tagacttacc gtttaagaca atatattttc cattattttt attgacaccc acatatacaa
       61 ccttatcaca agttatatta ccctctggac atagatttaa aatttttatc caaaactttt
      121 cattttcata ggtacattgc tctagtggag taaaatcctc ttgtgctaac aaataagtac
      181 taaaaaataa aaacaataat atatttttaa aaattaccat ttttcataac ctccttgagt
      241 gtaaagcttt attcagcatt tctcctatta attagtccct gcattacttt attttgactt
      301 ttgttccacg ccatccaagc ttcctttaat gttttgtaac ccgttttctc tgcattgatg
      361 attttggcaa caaaagagtt tttaaaatta tcaatcccta tattaaaaca taatataacc
      421 aagtcatcaa attcattctg tgccaaggaa gagtttattg aattttttac agcattttca
      481 aagggtaaca aatcgctttt aaacaattta tccgcttctc gtaaagtaat accattttta
      541 tacaaatccc attcattttg ccctataaga tgtccatatc cgatagttac acctttaaca
      601 tgtgaagtaa tttcttttcc attttgatca ttataaggtt tgagtcttag cttctctata
      661 ttttttaaaa gattttgacc atcattgctt agatgagtga ttttttcttg ggtattgttt
      721 tcactagaac ttatattatt gctttttgta gtgtttgtgt attttgtgcc attatttata
      781 tttacatctt tattttttgc ttttattttg ttttcactaa ccccatttac caccacaaat
      841 ttaccaacat aaagctcttg ttttctatct tcatcttcta agatttcatc tagtcaaggt
      901 gatagaatga aaaaatataa aaagatttta gtgctattat caccaataat tttaattata
      961 ttattttata ccccttttta tatcctagct attgggaatt tagaaggtta tgtaaattaa
     1021 ataattatcc aaaaagtgag gaaaaatata atagaatctt agcttatttt gataagagtt
     1081 tagatggtag tataggaaaa aatggttatg caaaaatagg ttat
//
LOCUS       DAPIWV010000175         1121 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.177, whole genome shotgun sequence.
ACCESSION   DAPIWV010000175 DAPIWV010000000
VERSION     DAPIWV010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.177"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            13..1121
                     /locus_tag="RJ272_001728"
                     /pseudo
     CDS             13..1121
                     /locus_tag="RJ272_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
BASE COUNT          483 a          142 c          142 g          354 t
ORIGIN      
        1 agaaagaaag ccatgaatta ctatcaagaa cttaaaaaat acctcaacaa taatcttttt
       61 acaagctatt ctttagaaat tgactttcct aagatttata atttcaacgc aaatcaaaaa
      121 gcctttagag atattttaac taaaattaca aaaatttacg acaaaaacaa atttataaaa
      181 caaaacgaac atcaatttga agatgaattt atatcaaaag tattagaaat tttagagtgg
      241 tgctttgtaa gacaagatga aaaaatcata caaggaaaat tggaaaaacc tgattttcta
      301 ctttttagca atgaaaaatt aaaaacaaaa tacgaaaatt tagacaaaga aacaaaaaaa
      361 tcaagcaatg atttcacaat cattttagag tcaaaagctt ataatataga aatagacaat
      421 aaaaaaagta aaagacaacc ctcactttca aattctaaga tatctaggca atcttaagaa
      481 aaattatggt tttttaacca atggtagatt ttggcgtttt tatgataatt ctatactgaa
      541 ttcaaacaaa gttttttacg aaatcaatct agaaaaaatc attgaagatc aaaatattga
      601 agcttttgcg tatttttata gtgtatttag cgcttttaat ttcacagaaa aagaagatca
      661 tttagaaata actctacaaa acaataaact ttcaaaaatc aaaatagaag atgatttaaa
      721 atctatcatt tacggaacca atggaaatga atctttattt gaattcatag gctctagaat
      781 ttacaataaa acaaaggcgg atttaaaact aatctatgaa aattctttat attttatctt
      841 taggctttta tttattgctt attttgaaga taaatttgaa attatactgg aaaaacataa
      901 gtattttaaa agtaaaatca gtcttagaac cttacttgaa aatttacaag aagatgaaag
      961 ctcaagtggt ggctttggag aacttgaaaa tattttcaac atttacaaca aaggcaaagg
     1021 caattttgac atgcctgttt ttaatggcgg tttgtttgat gaaagcaaaa ccgctctttt
     1081 aagcacgcca aaaatcttta acgataaaga tttaaaattc a
//
LOCUS       DAPIWV010000176         1097 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.178, whole genome shotgun sequence.
ACCESSION   DAPIWV010000176 DAPIWV010000000
VERSION     DAPIWV010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.178"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            312..575
                     /locus_tag="RJ272_001729"
     CDS             312..575
                     /locus_tag="RJ272_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014769654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382770.1"
                     /translation="MLLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQ
                     IYYLSREIATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(563..1054)
                     /locus_tag="RJ272_001730"
     CDS             complement(563..1054)
                     /locus_tag="RJ272_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382771.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYIRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
BASE COUNT          492 a          167 c          120 g          318 t
ORIGIN      
        1 acgaaataaa aaatatccaa accaaaacgc aaattcaaac aaaaagcaat caagctacca
       61 ctcaaacaaa acaagaaaaa aaggaactta caaattctat agaaaaaatt caaaaaacag
      121 aaactaaaat acaaaaacct ctaattatag aaaaaaaact agatgttaaa aatcaaccta
      181 atatcaagaa aagtttagaa aatttacaaa aaaaaataac accacaagaa aataaacaag
      241 aacttccaaa accatctaat caagctcaaa aaaaacaaca aaatgatgaa gatgctcaaa
      301 aggcaaaaaa tattttacta gaaggcttct ctaatgctac caaagaagat agaaacctaa
      361 acttcaatca tcttcttttt gcagctttac ttgttagttt tgcattattt ttatttgccc
      421 cacaaattta tattagaaat caaatttatt atcttagtag agagattgct acattaagaa
      481 cagaagaaag tgttttaaac gaggaaaata aagacttaaa aagaagactt gaaaatatgc
      541 gattccaaaa tcaaatttta gattatttag aatgaataat cttatctaaa acatactgct
      601 ctaaatttgc ttttggaatt tcttctttta aagcttcttt ataaaattca cccgccattg
      661 tagagtactt ttcataagca aaataaggaa agtgtaaagc ccaggctttt tgtattattt
      721 tttttgagat tattttgcga atataaactt taaaaatatc atatcctata aatacacaag
      781 cagtaaccat aacagcgctc actatgctta tatgaaagtc aagctttgtt aaaaaataat
      841 gagtaatcaa aagcaatggc aataaaatca cagcgcaaaa aacaccaaaa taaatataag
      901 aatttagaat tttgaaatta aaatttagct tagaaggatc tacaagcatt ccatcgttaa
      961 aaagtgcatt tgcctctaat aaatctctta taagaacagg ttgctctgat actttaaata
     1021 aaaaacgaag gctaaattct ttaaattttt tcataatcca cgctttattt tttaattaaa
     1081 attttatcca aagaaaa
//
LOCUS       DAPIWV010000177         1095 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.179, whole genome shotgun sequence.
ACCESSION   DAPIWV010000177 DAPIWV010000000
VERSION     DAPIWV010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.179"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(34..276)
                     /locus_tag="RJ272_001731"
     CDS             complement(34..276)
                     /locus_tag="RJ272_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382772.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            complement(260..>1095)
                     /locus_tag="RJ272_001732"
     CDS             complement(260..>1095)
                     /locus_tag="RJ272_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HDV7382773.1"
                     /translation="CEEFEKICKEKNTKIFLLDHHQSGEECAQKYSWYLLDSKRCATK
                     IVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINRVMFK
                     ESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDDTLSNLISYFVVEK
                     LSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRANG
                     KIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLIKSKELKKENNESK
                     Q"
BASE COUNT          381 a          184 c          106 g          424 t
ORIGIN      
        1 aatataaact aaaaaaaatt aaaatacact ttttcattga aaaaaatctt tgtatttatt
       61 ttttagaaat tccaccactt ctaaaatttc atcaacccct tctttgttgg aattttcgag
      121 tacattatct atattatcaa tataagcttc tattgcattt tctaattttt ctcttttaac
      181 tccagcgtat aaaagcatag cttctaaaac tatgctaagc tcatattgta aatcttctaa
      241 ttcatttttt aaggttttat tattgttttg attcattgtt ttccttttta agttctttgc
      301 ttttaattaa atcaataatt tgagccttaa tataattata atttgctcca tctttaaatg
      361 tcgcaaaaag tccaccacta gcatttttat gtccgccacc acctactaaa tttttagcca
      421 ttaaacttac atctattttt ccatttgcac gaaaacttaa ggtttttcta gaactaacat
      481 caataaaaaa gtcataatca ggatttttta ctaaaaaatc atttccaata acagaagtat
      541 tgcctatatt tgaagttaag atgcctttat ggccttcata ttctatgctg aaattttctt
      601 ttagctcact tagtttttca actacaaaat aagaaattaa attagaaaga gtatcatcat
      661 tttttctggc aaaataatcc ttttttataa aatgagtagc attatcgagt aaaatatttg
      721 cattttcttt tcctataaat ttccaagcct tatcaagcaa gaaaaacata taatcaattt
      781 gagattcttt aaacattaca cgatttattt cttttgcatt ggcaatcaag cctaaaaaaa
      841 cctttccaag ttcaaaattt tcatcctcgc ttagccaaat atcaacagca ttaaccacat
      901 caacaaattt tgaaagttct aaaacaggag tacagatttt agagaaaaaa tcataaacga
      961 ttttagttgc acatctttta gaatcaagta aataccaaga atatttttga gcacattctt
     1021 cgccactttg atgatgatca agaagaaaaa ttttagtatt tttctctttg caaatttttt
     1081 caaattcttc gcatt
//
LOCUS       DAPIWV010000178          998 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.180, whole genome shotgun sequence.
ACCESSION   DAPIWV010000178 DAPIWV010000000
VERSION     DAPIWV010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.180"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            87..986
                     /locus_tag="RJ272_001733"
     CDS             87..986
                     /locus_tag="RJ272_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HDV7382774.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQNSKLNNDYSSI
                     SIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENIFIKYIEAAIQNNI
                     KEDKILFENLTIKALEKYIKDFE"
BASE COUNT          439 a          102 c          146 g          311 t
ORIGIN      
        1 attaacggtg ctagtgaatt aaataatata gtttatattt taaataatct taaaatagta
       61 gaaaatatta caggggtaaa taaacaatga tagaaaaaga agagatagga attgctattg
      121 agaattatga cgaatgtatt agtggttcta aaacatttgt atttaacaca aagggtggaa
      181 ctataggaag cggtgatgat tgcacttttc gtattcaaga taaactagaa caaatcaaaa
      241 atacccatgc catagtatct tatgaagaag gatcttttac aattgcggct tttgaagatt
      301 ctgacattta ttataataag tccttttcta gaatgccaag tggctatgaa ataataatca
      361 gcataggcga tatttttaaa atcggtaatt tagaatttag atttgtggat gcaaaaagca
      421 ttgaagcaag cattaaagaa aataaaaaat acttagaaga tattgaaaaa cgcaatcatt
      481 ttgatgaaat tgaaattaaa cctagaggaa aaacaagtat aaattttgac aaaaacaaag
      541 agttaaaaga gattttagaa aataatgatt ataaatttat cgaagaagaa aaggcagatg
      601 atagcttttt aaaagaaata attcaaaaaa atccaaattc attagaatat gaaaatgttt
      661 taaaaagttt ggtaaaaaat ttaaaagata ttaaaacaaa acaacaaaac tctaaattaa
      721 ataatgatta ttcttctatt agtatcaaag attttgaaag tattattaat aatataccct
      781 taatcaaatc cacaagattg atcaatattt tagcccttag cctaatcgca aaagaattat
      841 atactccaat atttgaagaa atggaagaaa atatatttat taaatatatt gaagctgcca
      901 tacaaaacaa tatcaaagaa gataagattc tttttgaaaa tcttaccatc aaagcattgg
      961 aaaagtatat taaagatttt gagtgatttt tactcttt
//
LOCUS       DAPIWV010000179          996 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.181, whole genome shotgun sequence.
ACCESSION   DAPIWV010000179 DAPIWV010000000
VERSION     DAPIWV010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.181"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            13..372
                     /locus_tag="RJ272_001734"
     CDS             13..372
                     /locus_tag="RJ272_001734"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HDV7382775.1"
                     /translation="MKELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLY
                     KSEDKFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     VRHCVNSISLEFVKTKD"
     gene            387..>996
                     /locus_tag="RJ272_001735"
     CDS             387..>996
                     /locus_tag="RJ272_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDV7382776.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLSSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIIGLK"
BASE COUNT          307 a          105 c          202 g          382 t
ORIGIN      
        1 caagggtaga tcatgaaaga attaaatgaa gaagaaaaaa aagtaatttt aaataaagga
       61 acagaagctc cttttagtgg gaaatataat gatttttatg aaaaaggaat ctatcaatgc
      121 aagcaatgtg gagcttcgct ttataaatcc gaagataaat ttaaatcagg ttgtggatgg
      181 cctagctttg atgatgaaat aaaaggggct gttaaaagaa ttcctgataa agatgggatt
      241 agaaccgaga ttgtatgtgc aaattgcaat ggacatttag gtcatgtttt tgaaggagaa
      301 ggattttctg ctaaaaatgt aagacattgt gtaaattcta tttctttgga atttgtaaaa
      361 actaaggatt gatagtgttt tctagtatgg gttctgagct ttatttgatg ttttttgctg
      421 caattacttt acttgctata ttaaatcctt ttggtaattt aactcaattt ttggctatga
      481 gtgatggatt gcctttaatg cttcgaaaaa aactttttag aactattctc tatacagctt
      541 ttactatagt tttggtgttt ttatcatcag gacctttatt tatgaactat atttttagag
      601 tttcattgga tgatttaagg gtttctggtg gtttggttct tattataatg gctattaaaa
      661 atttactttt ttcaacaaaa attgcaacta aggattttag ttcttatcaa gatatggatg
      721 ataaggaaat tttaagacag agtttaatac ctatggcatt tcctatgctt gttgggcctg
      781 gaactttagc tagcgttatt gttatagccg aagatggtgg gcttgatgtt gctcttggtg
      841 gggtgatgat agcttttatt tttatgttta tactttttca ttttgcagct actatagaaa
      901 aaatagttgg aaaactgatt ttacatgttt tttctcgtat agcacaagta tttattgctg
      961 ctatggggtt taagatgatt attataggtt taaagg
//
LOCUS       DAPIWV010000180          963 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.182, whole genome shotgun sequence.
ACCESSION   DAPIWV010000180 DAPIWV010000000
VERSION     DAPIWV010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.182"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..158)
                     /locus_tag="RJ272_001736"
     CDS             complement(<1..158)
                     /locus_tag="RJ272_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382777.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNP"
     gene            complement(611..922)
                     /locus_tag="RJ272_001737"
     CDS             complement(611..922)
                     /locus_tag="RJ272_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382778.1"
                     /translation="MLKKLTSSLILGSLLASSAFAGDFLAKVSNGALSDNSQGVKALN
                     LDEMKQVKGGAISQDGRIAPLLVYGGRQLAMWGIRYAAWGAYQERHPINSGIGIHGWR
                     P"
BASE COUNT          368 a          163 c          112 g          320 t
ORIGIN      
        1 ggattatact caaatttttt tccacgataa ggcaaagcac cttctcctgt tataacggct
       61 actccgtgtt tgttgatttt aaagtcaata tttttatctt gtttaaaatt tgaagtgttg
      121 taatcatagt ttaaatttga gtttagacta tttatcattt ttattccttg caaatcatat
      181 cggcaaagta acccagtagc ttaatattta ttttgtttct ttttgtgata tatttttaaa
      241 accactatga ataaaataat gcaataggtt aaagaaaaaa atagccacaa aaatatattt
      301 tcgatattca caaaatgtag caataaatat aaaattataa aaaagaaaaa tcctattttg
      361 ctcataaaaa aacggttgca taaaacatag agaaaaagca agattatcaa aatatttatg
      421 caaagttcta gtgtggaaaa attcataatt aaagatttaa atttgctcct aaaaatatcc
      481 ataaagcttt gaaaaaataa aaaacaaaat aaaagcacca ataataagaa aaatgaggca
      541 aaaataaccc ttatccttgc agtaaataaa attttctatt atttgagcaa aaagattttc
      601 taacataagc ttatggacgc caaccatgaa ttccaatgcc actatttata ggatgtcttt
      661 cttgatatgc accccaagct gcgtatctta taccccacat cgcaagttgt ctgccaccat
      721 aaactaaaag aggtgctatc ctaccatctt gagaaatagc tccaccctta acttgcttca
      781 tctcatctaa attaagagct ttaacccctt gagaattatc acttaaagca ccattactaa
      841 ctttagctaa aaaatcccca gcaaaagcag aacttgccaa taaagagcct aaaatcaatg
      901 agcttgttaa tttttttaac atataattct ccttttctta actattttac tctttatttg
      961 aat
//
LOCUS       DAPIWV010000181          946 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.183, whole genome shotgun sequence.
ACCESSION   DAPIWV010000181 DAPIWV010000000
VERSION     DAPIWV010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.183"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(1..946)
                     /locus_tag="RJ272_001738"
                     /pseudo
     CDS             complement(1..946)
                     /locus_tag="RJ272_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
BASE COUNT          340 a          116 c          157 g          333 t
ORIGIN      
        1 aaaggtgttt attaatatct ttagaatttg catagagcgt gataggaaaa agatagcgaa
       61 tataacctct aaattcttta attttaaata aatctaattt atctttatgg gggggggtaa
      121 aattaaaatt tatagcaagt aaattcatgg tatcgaaggt ctttgattgg cggatttctt
      181 ccatatcaag atagcataca ttgtctttgt taaaatattt taataaataa gagatgataa
      241 aaactccttg ttgtagttcg tttatatcga ttttaatttt atgattttga tgagtaagat
      301 agtcaatata ataacgccaa tcataagtta gattaaattc agggggatag tttcttaaaa
      361 ctttactcca atctcttccc cagctatgct ttaaaagtcc cattggatct cgaactccgc
      421 aaataatctt agaattaaaa tctaataaag atagatattt atcaaaataa ggtagattaa
      481 tttctgatat attaatagca tattgagcaa ttgtattatc atttagacac atgtaattaa
      541 tacaatatct ctctttgcta tcaggtggta aaacccagga ggcaaaacaa gttacatcgc
      601 aacattgatt aaggtatcta aaaatgctgc tgctccaacg ccatgtggag aaatatagat
      661 aaatttatag tgtttaggca ggggtaaatt taaatcccaa gctaattctg cgcaatgtcg
      721 actagaatct atttctataa aattaggatt gattaaaggt ggataaggat gttttgttga
      781 taaatatcta tccctaaatt cgttagaatt gagccaagtg caaattgttt caatattttc
      841 caaaacaaag gtaaaaaaat ttttcattat tcgaattttt taaagcttgt aaaagaattt
      901 gagctagggt tggagttagg ttatttttta tatagagtaa aagatt
//
LOCUS       DAPIWV010000182          937 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.184, whole genome shotgun sequence.
ACCESSION   DAPIWV010000182 DAPIWV010000000
VERSION     DAPIWV010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.184"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..80)
                     /locus_tag="RJ272_001739"
     CDS             complement(<1..80)
                     /locus_tag="RJ272_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HDV7382779.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKE"
     gene            188..892
                     /locus_tag="RJ272_001740"
     CDS             188..892
                     /locus_tag="RJ272_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382780.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAEEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFSIAS"
BASE COUNT          399 a          155 c          147 g          236 t
ORIGIN      
        1 atttctttag taaaaatttt aagccaaggc acttgagcct cctctttctc tatataaatc
       61 aaatcatttt cataaatcat tacattcctt tgaaattgta tttatgatta ttttacaaaa
      121 tttatcaaat ttttaagtca aaatgcgtta aaattcctaa aaatttaaaa aacaaaaagg
      181 aggataaatg caaattagtt caagttataa ctcttatgat tactactcta gcaaaccttc
      241 ttttgataaa acaaatcaat ctgattccac tcaaaaagat gaaaaaaatc ttagtgaaaa
      301 taaagatgat aaagaaaaaa atggcgaaca aacccaaatg gttaatggcg tagagctaag
      361 ccaaaaagaa gtagctcaag ttcgcgaact ccaaagtatc gatagaaatg taaaggctca
      421 tgaagctgcg catcaagcag cgggcggcgg cttagcaggt gctgcaagtt ttacttatac
      481 aagaggccct gataatcaaa tgtatgctac agcgggtgaa gttcctatca gcatgcaaaa
      541 aggaaacaca ccagaagaaa ctatagccaa tgcaagacaa attgcagcag cagctatggc
      601 tcctgctgat cctagcccgc aagattataa agttgcagca aatgctacaa aaatggaatt
      661 tgaagcaaga gctgaagcaa tgaagcttaa agccgaagaa gccgaagaaa aagaagaaga
      721 aaataaagaa aaagatgaca aaaattcaga aaatagccta gaaaaaacag ataaagattc
      781 aaaaaacaac gataaaaatt caaattttga taaagacttt aaaaattttg tcgctagaac
      841 ttatcaacaa aactcacaaa ataacgacat taaattcagc atcgcatctt aaaattctta
      901 atttaaataa aaaatttcct tatgaaaacg atgactt
//
LOCUS       DAPIWV010000183          912 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.185, whole genome shotgun sequence.
ACCESSION   DAPIWV010000183 DAPIWV010000000
VERSION     DAPIWV010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.185"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..628
                     /locus_tag="RJ272_001741"
     CDS             <1..628
                     /locus_tag="RJ272_001741"
                     /inference="COORDINATES: protein motif:HMM:NF019552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HDV7382781.1"
                     /translation="HDDDLNFTLFYDNEEWFIDGGLYQYSEKDEFRKYLRSHLSHNLT
                     YPKNFKAHRNLQKSLKTHINNLSSENIYKFEGYSYMFDGFENYRSIEYDKNKLIFTII
                     DRCKILNKNIAIENNITYVTNFVIPKNKEIVIDKLNKCVKIIGKNKILHLIYQDNIDI
                     HMEENYISRKINTKEKVNILKFIHNGIHLDTVFNLAYSNDFVNYNLGC"
BASE COUNT          377 a           73 c          114 g          348 t
ORIGIN      
        1 acatgatgat gatttaaatt tcactttatt ttatgataat gaagaatggt ttattgatgg
       61 tggtttatat caatattctg aaaaagatga atttagaaaa tatttgagat ctcatctttc
      121 tcataattta acatatccta aaaactttaa ggctcatagg aatttgcaaa aatccttaaa
      181 aacacatata aataacttat ctagtgaaaa tatttataaa tttgaaggat attcttatat
      241 gtttgatggt tttgaaaatt atagaagtat agaatatgat aaaaataagt tgatttttac
      301 tattattgat agatgtaaaa tattaaacaa aaatatagcg attgaaaata atattactta
      361 tgtaactaat tttgttattc caaaaaataa agaaattgta atcgataaat tgaataaatg
      421 tgtaaaaatt attggaaaaa ataaaatatt gcatttaata tatcaagata atattgatat
      481 acatatggaa gaaaattata tatctagaaa aatcaataca aaagaaaaag taaatatttt
      541 aaaatttatt cataatggta tacatttgga tactgttttt aatttagctt attctaatga
      601 ttttgtgaat tataatttag gttgttaatc atgtttatta attatagaaa tgaacgaatt
      661 gagtttaatt tgccatttga ttgggctaaa aatccatata aaattagctc atatccacat
      721 catttaatgt ctttaagatg gataaatgag gagaattttt ccaaagagca aataaaaatc
      781 attatactag atttttatga ttttcatttt gttaaaaagg tacttcatcc ttattatgtt
      841 aaaatacaag ctgatcattg cacatgtata agattattta aattgtatca aattaaagat
      901 ttgtttaaag at
//
LOCUS       DAPIWV010000184          840 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.186, whole genome shotgun sequence.
ACCESSION   DAPIWV010000184 DAPIWV010000000
VERSION     DAPIWV010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.186"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..440
                     /locus_tag="RJ272_001742"
     CDS             <1..440
                     /locus_tag="RJ272_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382782.1"
                     /translation="MMILLFKDFIEYKQNKEIQNKNFIIQEEISKLKQDKQKLLTNIQ
                     DLNFTLSNKISSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNELKITNLEFKQ
                     TKIILSFIDENHFKRALENLNSAFKILDKNEETLNIILEVIHE"
     gene            433..>840
                     /locus_tag="RJ272_001743"
     CDS             433..>840
                     /locus_tag="RJ272_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382783.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDHFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTEEEKLKYYKEKLHLFSYDKDFFNK
                     KINNLSKNLTINEIKFSQENKNFIHYNYVSLSLN"
BASE COUNT          386 a          108 c           70 g          276 t
ORIGIN      
        1 gtatgatgat tttattattt aaagatttta tagaatacaa acaaaataag gaaattcaaa
       61 ataaaaattt tatcatacaa gaagaaattt ctaaactaaa acaagataag caaaaattat
      121 taacaaacat acaagattta aactttactc tttctaataa aatatcatct acacaacaac
      181 aatttcatat tttatccacc ataacaaaag aaatcaattt agacaaaaat aaagcaatca
      241 ttctaaatca aatcatatca tggcttaact ccaatgaact taaaatcaca aatcttgaat
      301 ttaaacaaac aaaaatcatt ctttctttta tcgatgaaaa ccactttaaa agagcattag
      361 aaaatctaaa ttctgctttt aaaattcttg ataaaaatga agaaacattg aatatcatat
      421 tagaagtcat acatgaataa aatagaagta tttttgcaga atttaaatcc tagggaaaaa
      481 tttcttttta tttcttttat ctgtctttgt gctttgtttt tagcttttaa aattcacgat
      541 cactttttgg aagatatttt tcaaaaaaca ttagtagaac ataattacct tgcattaaat
      601 gaagcaaaaa tagaaaattc acatcttaaa gaaatagaaa caaagctaac aaaacagata
      661 aaaacagagg aagaaaaatt aaaatactat aaagaaaaat tgcatttatt ttcttatgat
      721 aaagattttt tcaataaaaa aatcaataat ttatccaaaa atttaaccat taatgaaata
      781 aaattttccc aagaaaacaa aaattttatc cactataatt atgtttctct aagtttaaat
//
LOCUS       DAPIWV010000185          797 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.187, whole genome shotgun sequence.
ACCESSION   DAPIWV010000185 DAPIWV010000000
VERSION     DAPIWV010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.187"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..611)
                     /locus_tag="RJ272_001744"
     CDS             complement(<1..611)
                     /locus_tag="RJ272_001744"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382784.1"
                     /translation="MRYDSFMKLKHVVSSSNIKYYVIKPHNVGFTDTFLSACVVSSFL
                     DSLGLVFKGIVGVDKIDRSEYYQDLYQKINFKNTYNGSYYSIVDNNLDIDNIINEVKN
                     LNKSIDTILLEFNYNHVLRLFELFPIFERKFFFSSFYGYFNNLTKAKITYDNKINITI
                     HFRLGDEYPLFVNQDTVVNPSMLLRSRFDFAYYNIKNKKGYRV"
BASE COUNT          309 a          111 c           70 g          307 t
ORIGIN      
        1 attaccctat agcctttttt gttcttaata ttataataag caaaatcaaa tcgagatcgc
       61 aaaagcatac taggattaac aacagtatct tggtttacaa ataatggata ctcatctcct
      121 aatctaaaat gtattgtaat attaatttta ttatcataag taattttagc ttttgttaaa
      181 ttattaaaat aaccataaaa actactaaaa aaaaatttcc tttcaaaaat tgggaataat
      241 tcaaacagtc tcaacacatg attataatta aactctaaaa gtattgtatc aatagattta
      301 tttaaatttt taacctcatt gataatatta tcaatatcta agttattatc cacaatagaa
      361 taatagcttc cattatatgt atttttaaag tttatctttt gatataaatc ttgataatat
      421 tcgcttctat caattttatc tactccaaca atacccttaa aaactaaacc caaagaatct
      481 aaaaacgacg agacaacaca agcacttaaa aaggtatctg taaaacctac attatgtggt
      541 tttattacat aatattttat attactgcta gatacaacat gttttagttt cataaaacta
      601 tcataacgca tattttcctc cttataaata tatttttcaa gcttaaaata atatctattt
      661 ttattattgg atattttact agagaagaca attatatttg taaaagataa atttggatat
      721 tctttagcat aatatttatt atgaactttg atatcaaatg cactatttgc tcggaatata
      781 tatcttatat tgctttt
//
LOCUS       DAPIWV010000186          722 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.188, whole genome shotgun sequence.
ACCESSION   DAPIWV010000186 DAPIWV010000000
VERSION     DAPIWV010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.188"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            32..640
                     /gene="plsY"
                     /locus_tag="RJ272_001745"
     CDS             32..640
                     /gene="plsY"
                     /locus_tag="RJ272_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDV7382785.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            625..>722
                     /locus_tag="RJ272_001746"
     CDS             625..>722
                     /locus_tag="RJ272_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDV7382786.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKL"
BASE COUNT          255 a           94 c          110 g          263 t
ORIGIN      
        1 taaaatttta agatgatttg aaaaggatat tatggaaaat ttaataattt acgcttttat
       61 atatctttta ggttcaatcc cttttgggct aatcctagct aaattttttg ctaaaactga
      121 tatcaaaaaa gaaggttcaa aaagtatagg agcaaccaat gttttaagag tagtaaaaga
      181 aaaaaatccc aaactagcaa aaaaacttgc cattgctaca ataattttag attttgcaaa
      241 agcagctatt cctttactaa tcttgaaatt tcttcattat gatcaagctt tgctttggag
      301 cgtcgcagtt ttggctattt ttggacactg tttttcaatt tacttgttat ttgaaggagg
      361 gaaaggcata gcaacaggag caggcgctat gatagtttta cttccattgg aagtgcttac
      421 agcatttatt gtgtgggtag ttattggaaa aatttttaaa atatcttcgc tagcttcttt
      481 agcagcgtta cttgcttttg ttataagttc ttttatattt aattatgact tagaaattca
      541 tacacatgca cccgttttca ttatcgcttt tattatagta tataaacatc tacctaatat
      601 taaaagattg atttttaaag aagaatgcaa agtcatataa aaataaaatt tcactttaag
      661 tgtatcattg gtatattaga tttcgaaaga agaaaaaaac aaaaaattat tatcaagctt
      721 aa
//
LOCUS       DAPIWV010000187          707 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.189, whole genome shotgun sequence.
ACCESSION   DAPIWV010000187 DAPIWV010000000
VERSION     DAPIWV010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.189"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            85..>707
                     /locus_tag="RJ272_001747"
     CDS             85..>707
                     /locus_tag="RJ272_001747"
                     /inference="COORDINATES: protein motif:HMM:NF019552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HDV7382787.1"
                     /translation="MLTNKKLYFPIGDSIREPSVEFLSKIFFPNKKIMDINEILYPYS
                     VMNGSYSSESYFIYRNDSFGEYVHFACTCNWNSDAHKQNDELHFCLQLGDDIIFDDCG
                     YTDFLSINQYNELASEFSHSSITINNHNYIPKKKTNNKSKILSSRANLFGFKVVMQHS
                     RIKKCDICRIINFNSKSYILEINDEIVVENDLIGEIINFSFVLSPDI"
BASE COUNT          269 a           71 c          101 g          266 t
ORIGIN      
        1 tacgctttat ttggttattt ttttaacaaa aaactaataa catcaaagct tttaaaagaa
       61 acaagcagga aatttttagg attcatgttg accaataaaa aattatattt tccaataggt
      121 gatagcataa gagagccatc tgttgaattt ttatctaaaa tcttttttcc aaataaaaaa
      181 ataatggata taaacgaaat tctctatccg tattctgtta tgaatggtag ttattcaagt
      241 gaatcttatt tcatatatag gaatgattct tttggagaat atgtgcactt tgcatgtact
      301 tgtaattgga attctgatgc tcataaacaa aatgatgaat tacatttttg tttgcaattg
      361 ggcgatgata ttatttttga tgattgtggt tatacagatt ttttatctat aaatcaatat
      421 aatgaattag ctagcgaatt tagtcattct agtataacta ttaataatca caattatatt
      481 cctaagaaaa aaactaataa taagtctaaa atacttagtt caagggcaaa tttatttgga
      541 tttaaagtgg taatgcaaca tagcagaata aaaaaatgtg atatttgtag aataattaat
      601 tttaacagta aatcatatat tctcgaaata aatgacgaaa tagttgttga gaatgattta
      661 attggtgaaa taattaattt tagttttgtt ttatcacctg atataaa
//
LOCUS       DAPIWV010000188          704 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.190, whole genome shotgun sequence.
ACCESSION   DAPIWV010000188 DAPIWV010000000
VERSION     DAPIWV010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.190"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..303
                     /locus_tag="RJ272_001748"
     CDS             <1..303
                     /locus_tag="RJ272_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382788.1"
                     /translation="YQNNLIKELDINSQKEKIKILFIINEVPKFLKSIYKECEFKEYG
                     LANYLEFDEIWGFYENNTRYFTILTPMGANKIKLRLENTQNSEKELNIIEVNLDKK"
     gene            551..>704
                     /locus_tag="RJ272_001749"
     CDS             551..>704
                     /locus_tag="RJ272_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HDV7382789.1"
                     /translation="MIISFLDDDIDKPYVSGSLYNGANPSLVNLPFNDRQTSLSSKTI
                     GVNEEGY"
BASE COUNT          292 a           90 c           86 g          236 t
ORIGIN      
        1 tatcaaaata atctgattaa agaattggat attaattctc aaaaagaaaa aatcaaaata
       61 ctttttatta ttaatgaagt gccaaaattt ttaaaatcaa tctataaaga atgtgagttt
      121 aaagaatatg gattagcaaa ttatttggaa tttgatgaaa tttggggttt ttatgaaaat
      181 aatactagat attttactat tttaactccc atgggtgcaa ataaaataaa attgcgttta
      241 gaaaatacac aaaacagcga aaaagaactc aatatcatag aagtaaattt agataaaaaa
      301 tagattttaa taacaaaaat aagcaatttc tttttctact caaatttaga ctatttgtgt
      361 taaaataata aatataaaaa ttaaaaacat agtggattta taccaaatta taaacaccat
      421 aaactcaacc cccaaaagga tcatcaatgt cccttaattc ttacatgagt cttaatatat
      481 caaattctac ttcaaatccc ctacccttta aaatcactaa agcccttatc aaagaaagtt
      541 aggagatgaa gtgattattt cttttttaga tgatgatata gataaacctt atgtaagtgg
      601 aagtttgtat aatggggcta atccaagttt agtaaatctt ccttttaatg atcgccaaac
      661 ttctctttct tctaaaacca taggtgttaa tgaagaaggt tata
//
LOCUS       DAPIWV010000189          691 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.191, whole genome shotgun sequence.
ACCESSION   DAPIWV010000189 DAPIWV010000000
VERSION     DAPIWV010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.191"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            1..687
                     /gene="ung"
                     /locus_tag="RJ272_001750"
     CDS             1..687
                     /gene="ung"
                     /locus_tag="RJ272_001750"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDV7382790.1"
                     /translation="MTINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNIVI
                     YPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNIFKE
                     LQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSN
                     EKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKV
                     GKIPIDWKIV"
BASE COUNT          275 a           91 c          107 g          218 t
ORIGIN      
        1 attacaataa acatagataa gattaaaata aatgatgact ggaaagaatt tttaagagac
       61 gaatttcaaa aaaaatattt tctagaaatc aaaaaacaat acctaaatgc gattaatcaa
      121 aatatagtta tttatccgcc tgcaaattta atctttaatg cttttaattt atgtccttta
      181 aaagaaatta aaattattat cctaggacaa gatccttatc atcaaccaaa tcaagcaatg
      241 gggcttagtt tttcggttcc aaaaaatgta aaaatcccac caagtcttaa taatattttt
      301 aaagaattgc aaaatgattt aaacatcact ccagcaaaaa gcggagattt aagctcttgg
      361 gcaaaacaag gagttttgct cttaaattct attcttagcg ttgaagcaaa taaagcagct
      421 agccatagtt cgtggggttg gcaagaattt agtgatgcta taatacataa attaagtaat
      481 gaaaaatcag ggcttgtttt tatgctttgg ggaaattacg caaaaaacaa ggagattttg
      541 attgataata ctaagcattt gattttaaaa gcagctcacc caagtccttt agctagaaca
      601 ggatttttag gttgtaagca tttttcaaag gctaatgaat ttttaaaaaa agttggtaaa
      661 attcctatag attggaaaat agtttaaaaa a
//
LOCUS       DAPIWV010000190          685 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.192, whole genome shotgun sequence.
ACCESSION   DAPIWV010000190 DAPIWV010000000
VERSION     DAPIWV010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.192"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>685)
                     /locus_tag="RJ272_001751"
     CDS             complement(<1..>685)
                     /locus_tag="RJ272_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382791.1"
                     /translation="QELFDNFILKDANEIIPFEEYFSDDRGAGVAAFSDFFRFNLLYL
                     RGGVWVDLDMVCLNHYDYDKKEYIFSKEIDNDLSKARITTSLLKFPKQSEFGKLIIDE
                     AKKIVDDNKIIPWGIIGPWFLAKWVKEYDLEKHALDYKDTCQISCGNTRDFIDKKIFD
                     ENRLCLHLFSEMWRIYKMNKNHFYKSCIYGFLLQKHNILDLCLKLNYNLSFCDKHYDK
                     FLPFINIKNK"
BASE COUNT          253 a          112 c           70 g          250 t
ORIGIN      
        1 tttatttttt atattaataa aaggaaggaa tttatcataa tgtttatcgc aaaaactaag
       61 attataattt aatttaagac ataaatcaag gatattgtgc ttttgaagta aaaatccata
      121 aatacacgat ttataaaaat gatttttatt cattttataa attctccaca tttcagaaaa
      181 taaatgcaaa caaagtctgt tttcatcgaa aattttttta tctataaaat ctctagtatt
      241 accacaagaa atttgacaag tatctttata gtctagagca tgtttttcta aatcatattc
      301 tttaacccat ttagctaaaa accaaggacc tataataccc caaggaatta ttttgttatc
      361 atcaacaatc ttttttgctt catctataat taattttcca aattcacttt gttttggaaa
      421 tttaaggagt gaagttgtga ttctagcttt gcttagatca ttatcaattt ccttagaaaa
      481 aatatattct tttttatcat aatcataatg gtttaaacac accatatcaa gatccaccca
      541 tacccccccc ctgagataaa gtagattaaa cctaaaaaaa tctgaaaaag cagctactcc
      601 agctccccta tcatcgctaa aatattcttc aaaaggtatg atttcatttg catctttaag
      661 tataaaatta tcaaacagct cttgg
//
LOCUS       DAPIWV010000191          631 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.193, whole genome shotgun sequence.
ACCESSION   DAPIWV010000191 DAPIWV010000000
VERSION     DAPIWV010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.193"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            20..430
                     /gene="perR"
                     /locus_tag="RJ272_001752"
     CDS             20..430
                     /gene="perR"
                     /locus_tag="RJ272_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HDV7382792.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
BASE COUNT          252 a           74 c           90 g          215 t
ORIGIN      
        1 aaagtaagga ataaataaaa tggaattact acaaatgctt aaaaaacatg agttaaaagc
       61 tactccgcaa agactatgtg ttttaaaaat tttaaaaaga catgagcatc ctaatattga
      121 tgaattatat acagaaatta aaaaagaata cccttcaatc tctttagcga cggtttataa
      181 aaatcttaat actttacaag aacaaggttt agttgttgaa atcaatgttt taaatcaaaa
      241 aacttgttac gatatctatg aagaagaaca tattcatgtt gtttgcgcca aatgtggtgg
      301 tatagaggat ttaagtttta aagatgctaa gctttatgaa tatcaagagc atttagaaaa
      361 aaagataggc aatctcgtca atcatctgtc tgtttgtgct tatgttgata gttgcaaaaa
      421 gtgtcattaa gcaaaataag gttaaaataa cccatatatt ttaagggtta ttttaatggt
      481 ttatgaaatt caaaaaaact ttttactatc tgattgcact cttttagaga atttaaaaaa
      541 agataatata ccttttcgaa attctaaatt tgaaactttt tatactcaaa taacttcaaa
      601 tcatagtgtt aaatttcaaa gtttttgcaa t
//
LOCUS       DAPIWV010000192          624 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.194, whole genome shotgun sequence.
ACCESSION   DAPIWV010000192 DAPIWV010000000
VERSION     DAPIWV010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.194"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            110..448
                     /locus_tag="RJ272_001753"
                     /pseudo
     CDS             110..448
                     /locus_tag="RJ272_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935934.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          243 a           87 c           98 g          196 t
ORIGIN      
        1 ccaatatgga aaaactatgc accaaatatt tatggtaatg agggtaatat ggattttaga
       61 ttaaagcttg acggtgaaat agattgcaga agcttattag gagaattata tggataataa
      121 acaacaaatc aataaactaa gggacatggc agaacttgca caggcaagtt atggatattt
      181 tcattatgtt gataataaat ttgatataaa agatgaagat aaaattgtta cctttgaaaa
      241 tgttttagat attacctata aaaactctaa aattattgat gaaagaggat ttaaaatcgg
      301 caagctcgat ggcgacttct ccccactcca agctaaacaa ttcttttctc gctatgattt
      361 attaatccat caaccaaata cagagtcaag cttttctgct actttgtttt acgataaaca
      421 aaaagatgaa tttataatag gatttagggg aactgaagtt tcttttaaag atttaaaagc
      481 gacatgggaa accgctttag atacaaccca agacttagtc ttatctctca atggcaatct
      541 tcaatcttct tttcttttag aatttttaga acaagtaaat aaaataatca aaaataaaca
      601 caaaagaatt atatttgtag gaca
//
LOCUS       DAPIWV010000193          595 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.195, whole genome shotgun sequence.
ACCESSION   DAPIWV010000193 DAPIWV010000000
VERSION     DAPIWV010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.195"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..>595
                     /locus_tag="RJ272_001754"
     CDS             <1..>595
                     /locus_tag="RJ272_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDV7382793.1"
                     /translation="WPILQTLQEKKYIKCDLKNKSYYLDFKIIELGCNIKNENNIFEI
                     IKKHMKNIRNLTNQTCQMGILKDGNVLYLEKIDANNTVQLKSFIGTSYPAYATSLGKA
                     LLSNKNKKELEKLYPKNFDKITENTLNNINELYQQIKQIKKEKIAIEIGEMNPQIECM
                     AIGIEHKNKIIAAISISYLIYCSNKAFREKNKKILLEE"
BASE COUNT          282 a           64 c           68 g          181 t
ORIGIN      
        1 ttggcctatt ttacaaactc ttcaagaaaa aaaatatatc aaatgtgatt taaaaaataa
       61 aagttattat ttggatttta agattataga attaggatgt aatataaaaa atgaaaataa
      121 tatttttgaa ataatcaaaa agcatatgaa aaatataaga aatttaacca atcaaacttg
      181 tcaaatggga attttaaaag atggaaatgt gctttattta gaaaaaattg atgctaataa
      241 tacagtacaa ttaaaatctt ttataggcac ttcgtatcct gcttatgcaa catctttagg
      301 caaagcctta ctatcaaata aaaataaaaa ggaattagaa aaactttatc ctaaaaattt
      361 tgataaaatt acagaaaaca ccttaaataa tataaatgaa ctctatcaac aaatcaaaca
      421 aattaaaaaa gaaaaaattg ccatagaaat tggagaaatg aatcctcaaa ttgaatgtat
      481 ggctataggc atagaacata aaaataaaat aattgctgcc attagtatat cttatctaat
      541 ttattgctct aataaagctt ttagagaaaa aaataaaaaa atacttctag aagaa
//
LOCUS       DAPIWV010000194          572 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.196, whole genome shotgun sequence.
ACCESSION   DAPIWV010000194 DAPIWV010000000
VERSION     DAPIWV010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.196"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..>572
                     /locus_tag="RJ272_001755"
     CDS             <1..>572
                     /locus_tag="RJ272_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HDV7382794.1"
                     /translation="EEFKLKNSNGHNMYSSALNYYRAFLIDYYEQDIFITERVQSEES
                     NMKIIPLNQILYGSPGTGKTYHTIDKALEIISKEEKIQIPSEDDRINRKKIFDEYVKN
                     GQIVFTTFHQSYGYEEFVEGIKPIIDNDENSQEVKYDVKDGIFKELCDKSLKNYILSM
                     QNENEIDLDKLIFEFANYINQDFLNKGNEFP"
BASE COUNT          254 a           45 c           86 g          187 t
ORIGIN      
        1 gaagaattta agttaaaaaa tagcaatgga cacaatatgt attctagtgc attgaattat
       61 tatagagctt ttttgattga ttattatgaa caagatattt ttataactga aagagtgcaa
      121 tctgaggaat caaatatgaa aattatacca ttaaatcaaa ttctttatgg gtctccaggg
      181 acaggaaaaa cttatcatac tatagataaa gctttagaga ttatatcaaa agaagaaaaa
      241 atacaaattc caagtgaaga tgatagaata aatagaaaaa aaatatttga tgagtatgta
      301 aaaaatggac aaatagtatt tactactttt catcaaagct atggatatga agaatttgta
      361 gaaggtataa agcctataat agacaatgat gaaaattctc aagaagtaaa atatgatgta
      421 aaagatggaa tttttaaaga attatgtgat aaatctttga aaaattatat tttatcaatg
      481 caaaatgaaa atgaaattga tttagataaa ttaatttttg aatttgctaa ttatattaat
      541 caagattttt taaataaagg aaatgaattt cc
//
LOCUS       DAPIWV010000195          570 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.197, whole genome shotgun sequence.
ACCESSION   DAPIWV010000195 DAPIWV010000000
VERSION     DAPIWV010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.197"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..470)
                     /locus_tag="RJ272_001756"
     CDS             complement(<1..470)
                     /locus_tag="RJ272_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7382795.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLKISFQDKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKTHTISNLKTLNLDFESFYKNNN
                     AKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTE"
BASE COUNT          195 a           78 c           70 g          227 t
ORIGIN      
        1 aattcagtat taaaatattt aaaaatcgga tctaaaaaat cactttttct ataatcagcc
       61 caaccaagat aaatttttat tttggctaga tttaagaaat ttgtataatc tttttcattt
      121 tgtaaagcag gagacatact taaaaaggct aagtcaaatt ttgcgttatt atttttataa
      181 aagctttcaa agtctaaatt cagggttttt aaatttgata tggtatgagt ttttgcatct
      241 tcttgtaaaa tttcaagcat agtatttgca ctatctaggg ctaaaatttc tttagcttct
      301 ttagctaagt gtaaagtcca aaccccagtt ccacatccta tatctataat acttttatct
      361 tgaaaggaaa tctttaaatt ttgtaaatat tcaaaagttt gcttttgtat ggtgtttaaa
      421 gtgttttgat atcttgcgta agttttggcc tttttatccc ataaattcat atattttcct
      481 ttataaaata tacaaaatca tagcataaat ttttaaaatt caagcccaaa gaaagggctt
      541 gaatgattaa ttaaaacctc ttcttcttaa
//
LOCUS       DAPIWV010000196          557 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.198, whole genome shotgun sequence.
ACCESSION   DAPIWV010000196 DAPIWV010000000
VERSION     DAPIWV010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.198"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            91..166
                     /locus_tag="RJ272_001757"
     tRNA            91..166
                     /locus_tag="RJ272_001757"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:124..126,aa:Ala,seq:tgc)
     gene            175..251
                     /locus_tag="RJ272_001758"
     tRNA            175..251
                     /locus_tag="RJ272_001758"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:209..211,aa:Ile,seq:gat)
BASE COUNT          192 a           81 c           85 g          199 t
ORIGIN      
        1 gtaataagtc tcacaactat tacttcaata tataaactca attgattctt gtttagattt
       61 caaagattga tgataaagct aattgtttat ggggaattag ctcagctggg agagcgcctg
      121 ctttgcacgc aggaggtcag cggttcgatc ccgctattct ccaccattta ttaagggcct
      181 atagctcagc tggttagagt gcacccctga taagggtgag gtcacaagtt caagtcttgt
      241 taggcccacc ataaaaaaga tttgaataaa gaagctttaa aatctaaagc aagtatataa
      301 aatagattaa atataaactc tatacttaga tttattttta tctttaacta taaaagaata
      361 tactttaata gatataagta gcatatacat tatgcattta tatttataat gattatgtta
      421 atatatatac ttcctttagg ttttaaacct aaatgttctt tttaattatc attgttaaga
      481 gtcacaagca agttttaata aaaacaattt tacaggactt gttaaaggat aaaacctatt
      541 tatcttttct ttagttt
//
LOCUS       DAPIWV010000197          541 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.199, whole genome shotgun sequence.
ACCESSION   DAPIWV010000197 DAPIWV010000000
VERSION     DAPIWV010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.199"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..>541
                     /locus_tag="RJ272_001759"
     CDS             <1..>541
                     /locus_tag="RJ272_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382796.1"
                     /translation="LGVCSVVLSSSVCFAAVQATSKDGKIFYISEHSFKDNQVYDPQA
                     EIFKKINGKNFYASKSKYPISNLTMIHNNPKSGNKNLSKLEILTPDTSKEEIITAFST
                     LGTVSSDTQAVPSSFIPFIVIAYAQNTNATNNKLILENGELSSVYFCKPSIGDCGVPN
                     NSQKGDRFKYLITAAFTDRR"
BASE COUNT          182 a           83 c           89 g          187 t
ORIGIN      
        1 ttgggcgttt gtagtgtggt tttatcttct tcggtttgtt ttgcggcggt tcaggctaca
       61 agcaaggatg gaaaaatttt ttatatttct gaacattctt ttaaggataa tcaagtttat
      121 gatcctcaag cagaaatttt taaaaaaatt aatggaaaaa atttctatgc ttctaagtca
      181 aaatacccta tatcaaattt aactatgatt cataataacc ctaaatctgg aaataaaaat
      241 ttatccaagc ttgaaatttt aactccggat acttcaaaag aagagatcat aacagctttt
      301 agcactttag gaaccgtatc ttcagatact caagccgttc ctagttcttt tatacctttt
      361 attgtaatag cttatgctca aaatacaaat gcaacaaata ataaacttat attagaaaat
      421 ggagaattat cttctgtgta tttttgcaaa ccaagcatag gggattgtgg agtacctaat
      481 aattctcaaa aaggcgatcg ttttaagtat ttaattactg cggcgtttac tgacaggcgg
      541 g
//
LOCUS       DAPIWV010000198          527 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.200, whole genome shotgun sequence.
ACCESSION   DAPIWV010000198 DAPIWV010000000
VERSION     DAPIWV010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.200"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            31..>527
                     /locus_tag="RJ272_001760"
     CDS             31..>527
                     /locus_tag="RJ272_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7382797.1"
                     /translation="MKKIILFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDINVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FPKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYP"
BASE COUNT          211 a           81 c           62 g          173 t
ORIGIN      
        1 tttaaaaaat ttatatcgaa aggaaatatt ttgaaaaaaa ttatattatt tatcttatct
       61 ttagggatat tttatacttt cacacaagct aaaaatttag agcaagaaca aaatactagt
      121 agcaatttag ttagtgtcag tatagcacct caagcatttt ttgttaaaaa aatagctgca
      181 aatactctag atatcaatgt tattttgccc ccaaatagca atgagcataa ttttgaattt
      241 aaaccaagta ctatgaaaaa acttgaaaaa agtgatattt atttcactat aggcttagaa
      301 tttgaaaaag tttttacgga taaatttaaa caaaattttc caaaacttca agttgtaaat
      361 atgcaaaaaa acatagcttt gattcaaact catgatacac acgaacactc tcatgagcat
      421 gaacaccacg aacatgagca ttttgatcct catacttggc tagatcctat tttagtccaa
      481 actatggctt taaatattta tgacacctta attcaaaaat atccaca
//
LOCUS       DAPIWV010000199          501 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.201, whole genome shotgun sequence.
ACCESSION   DAPIWV010000199 DAPIWV010000000
VERSION     DAPIWV010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.201"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..>501
                     /locus_tag="RJ272_001761"
     CDS             <1..>501
                     /locus_tag="RJ272_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7382798.1"
                     /translation="NDLQNFNLKANYIKILTKTDRQLLQHNDFLKLNHFKEILNYKQM
                     ILKKDEIKLKKFTFISKASHEDSKEIYSFFRKYFNQYLFYFSHKNLEEKISDILIYKE
                     NQKIRAALIYTQTLNTNFLDFIAVDRNLKHKNVAFALLNHYFAANTQNKFFKLFVEEK
                     NQKAIN"
BASE COUNT          217 a           68 c           45 g          171 t
ORIGIN      
        1 tcaatgattt acagaatttt aatttaaagg ctaattatat aaaaatctta accaaaaccg
       61 ataggcaact tttacaacat aatgattttt taaaactcaa tcattttaaa gaaatactca
      121 attataaaca aatgatactc aaaaaagatg agataaaatt aaaaaaattt acctttatct
      181 ctaaagcttc acatgaagat agcaaggaaa tttatagctt tttcagaaaa tattttaatc
      241 aatatttgtt ttatttttcg cacaaaaatc ttgaagaaaa aatatctgat atacttatct
      301 ataaagaaaa tcaaaaaatt cgcgctgctt tgatctatac tcaaactctc aatacaaatt
      361 ttttagattt tatagccgta gacagaaatt taaaacataa aaatgtagct tttgctttac
      421 taaatcatta ttttgcagcc aatactcaaa ataaattctt taaacttttt gtagaagaaa
      481 aaaatcaaaa agccattaat t
//
LOCUS       DAPIWV010000200          479 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.202, whole genome shotgun sequence.
ACCESSION   DAPIWV010000200 DAPIWV010000000
VERSION     DAPIWV010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.202"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>479)
                     /locus_tag="RJ272_001762"
     CDS             complement(<1..>479)
                     /locus_tag="RJ272_001762"
                     /inference="COORDINATES: protein motif:HMM:NF028199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382799.1"
                     /translation="NYISEDQFLLLQKILAIDVNKLLMDEFYSKNTNHGLDQSLSLYK
                     ASFFLEVDNILDIRNVAIERINSELKFAFCDDGGHKENSPAYLYYGVSQVLRALDIGY
                     KYEKENTKIYFPLDLLKKSCLVLGYFVQFNEKMPLIGDTVEFKINNFLLNKISIHNC"
BASE COUNT          186 a           70 c           43 g          180 t
ORIGIN      
        1 tacaattatg tattgagatt ttatttagta aaaaattatt tattttaaat tcaacagtat
       61 caccaataag aggcattttt tcgttaaatt gaacaaaata tcctaaaacc aaacaagatt
      121 ttttcaacaa atctaatgga aaatatattt tagtattttc tttttcgtat ttataaccaa
      181 tatctaaagc tcttaaaact tgagaaacgc cataatataa ataggctgga ctattttcct
      241 tatgaccacc atcgtcgcaa aaagcaaatt tgagctcact gttaattctt tctattgcaa
      301 catttcttat atccaatata ttatcaactt ctaaaaaaaa agatgcttta tataaagata
      361 aactttgatc taatccatga tttgtatttt tagaataaaa ctcatccatt aaaagtttat
      421 taacatcaat tgctaaaatt ttttgtaaaa gcaaaaactg atcttcactt atataattt
//
LOCUS       DAPIWV010000201          383 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.203, whole genome shotgun sequence.
ACCESSION   DAPIWV010000201 DAPIWV010000000
VERSION     DAPIWV010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.203"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            66..>383
                     /locus_tag="RJ272_001763"
     CDS             66..>383
                     /locus_tag="RJ272_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382800.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYNEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKF"
BASE COUNT          149 a           20 c           59 g          155 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaaatgct tattattgga cataaattat taaaaaattt agatttttct tttattgaaa
      121 gtgttgaaga agttaaagat aataaagttt attgtattgt ttataatgaa aaattgattt
      181 cttatttaag tcaaaatgat tttgaatttg ctattttagt tcaaaataaa gatgagatat
      241 ttttagccaa tgctttagga gctaagtttt tgctttgtaa tgataaaaaa cttgcaaaat
      301 ttgctagtaa ggttgcagaa ttttatgttt ttgatagtag ggttttaatg attgttgata
      361 aattagagaa ttttaaaaaa ttt
//
LOCUS       DAPIWV010000202          368 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.204, whole genome shotgun sequence.
ACCESSION   DAPIWV010000202 DAPIWV010000000
VERSION     DAPIWV010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.204"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..>368
                     /locus_tag="RJ272_001764"
     CDS             <1..>368
                     /locus_tag="RJ272_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7382801.1"
                     /translation="TGSIGVGAGILHTENYGRLSLVKNDGRDINISGTGLSAIGMGAT
                     DMISQSSVSLRESKGQISAANADAMGFNAYNGGGAKQIIFASSIAGFMSQAGSGFSAG
                     SGFSVGSGKNYSAILSASIQ"
BASE COUNT          104 a           57 c           88 g          119 t
ORIGIN      
        1 acaggtagca taggtgtagg agctggtata ttgcacactg aaaattatgg aaggttatct
       61 ttagttaaaa atgatggtag agatatcaat ataagtggaa caggtctttc agctataggt
      121 atgggtgcta cagacatgat ttctcaatct tcagtatctc taagagagtc aaaagggcaa
      181 atttcagcag ccaatgctga tgctatgggc tttaatgctt ataatggcgg cggcgctaag
      241 caaattattt tcgcttctag tattgcagga tttatgtctc aggctggttc aggcttctct
      301 gctggttcgg gattttcagt aggtagtggt aaaaattatt cagccatttt atcagcttct
      361 atacagat
//
LOCUS       DAPIWV010000203          363 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.denovo.205, whole genome shotgun sequence.
ACCESSION   DAPIWV010000203 DAPIWV010000000
VERSION     DAPIWV010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.denovo.205"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            complement(5..80)
                     /locus_tag="RJ272_001765"
     tRNA            complement(5..80)
                     /locus_tag="RJ272_001765"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(45..47),aa:Arg,seq:tct)
     gene            complement(100..175)
                     /locus_tag="RJ272_001766"
     tRNA            complement(100..175)
                     /locus_tag="RJ272_001766"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(140..142),aa:Lys,seq:ttt)
     gene            complement(180..256)
                     /locus_tag="RJ272_001767"
     tRNA            complement(180..256)
                     /locus_tag="RJ272_001767"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(220..222),aa:Asp,seq:gtc)
BASE COUNT          103 a           90 c           89 g           81 t
ORIGIN      
        1 tgattggcga cccctagagg atttgaacct ctgtttccac acagagagag tgttgtcctg
       61 ggccactaga cgaaagggtc ataaccctaa caataaaaat ggtgtcccgt gttggattcg
      121 aaccaacggc cccctcctta aaagggagat gctctaccgg ctgagctaac gagacaatat
      181 ggcgcagcgg acggggctcg aacccgcgac ctccgccgtg acagggcggc attctaacca
      241 gctgaactac cgctgcatcc aaagtaaaga agtagagatt ataaaaccta tttatgattt
      301 tataaaatgg tggtcactat aagactcgaa cttatgacat ccaccttgta agggtggcgc
      361 tct
//
LOCUS       DAPIWV010000204        24845 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.guided.010, whole genome shotgun sequence.
ACCESSION   DAPIWV010000204 DAPIWV010000000
VERSION     DAPIWV010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24845
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.guided.010"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            100..876
                     /gene="surE"
                     /locus_tag="RJ272_001768"
     CDS             100..876
                     /gene="surE"
                     /locus_tag="RJ272_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDV7382802.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            866..1525
                     /locus_tag="RJ272_001769"
     CDS             866..1525
                     /locus_tag="RJ272_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HDV7382803.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLDKK
                     S"
     gene            1509..1967
                     /locus_tag="RJ272_001770"
     CDS             1509..1967
                     /locus_tag="RJ272_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7382804.1"
                     /translation="MIRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(2030..2410)
                     /locus_tag="RJ272_001771"
     CDS             complement(2030..2410)
                     /locus_tag="RJ272_001771"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDV7382805.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTVTKITNYEKHGAIF"
     gene            complement(2407..3255)
                     /locus_tag="RJ272_001772"
     CDS             complement(2407..3255)
                     /locus_tag="RJ272_001772"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDV7382806.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3266..4090)
                     /gene="panB"
                     /locus_tag="RJ272_001773"
     CDS             complement(3266..4090)
                     /gene="panB"
                     /locus_tag="RJ272_001773"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDV7382807.1"
                     /translation="MRKSILSFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            4307..5068
                     /locus_tag="RJ272_001774"
     CDS             4307..5068
                     /locus_tag="RJ272_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-461"
                     /protein_id="HDV7382808.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFLRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKS"
     gene            complement(5166..6050)
                     /locus_tag="RJ272_001775"
     CDS             complement(5166..6050)
                     /locus_tag="RJ272_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7382809.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(6047..6721)
                     /gene="modB"
                     /locus_tag="RJ272_001776"
     CDS             complement(6047..6721)
                     /gene="modB"
                     /locus_tag="RJ272_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7382810.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(6714..7115)
                     /locus_tag="RJ272_001777"
     CDS             complement(6714..7115)
                     /locus_tag="RJ272_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7382811.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(7112..7861)
                     /gene="modA"
                     /locus_tag="RJ272_001778"
     CDS             complement(7112..7861)
                     /gene="modA"
                     /locus_tag="RJ272_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7382812.1"
                     /translation="MKKFIVFFGILFFTLHLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(7912..8598)
                     /gene="bioC"
                     /locus_tag="RJ272_001779"
     CDS             complement(7912..8598)
                     /gene="bioC"
                     /locus_tag="RJ272_001779"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDV7382813.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFGCG
                     RGEFSKKLQNFITFNKYLKNDILNFKENSNILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIILSLRDMLNQNGILLLSTFAKQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELVELSFDNALEVFRHLKLSGVNSLGFYPLNKCFLKDFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(8595..9206)
                     /locus_tag="RJ272_001780"
     CDS             complement(8595..9206)
                     /locus_tag="RJ272_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDV7382814.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASYPSHFSHLKSDKNVILFYDY
                     ENFDLNFNFKAFDELFLIAFSIGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEALFKERKSLAKDFIFKDEKSLKIELEKLFDFALTKQEENLLW
                     DKVYSSKEDEIFPPNALKNSFKNLIFLDEPHFAFFHFKTWDEL"
     gene            complement(9203..10345)
                     /locus_tag="RJ272_001781"
     CDS             complement(9203..10345)
                     /locus_tag="RJ272_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDV7382815.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDQKLLNLAGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEELESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLADKFIHASMIDGLRLGEADFFRFHHKNMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDKEGL
                     GLVKKLALENEVDFLVFTFGKAIASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHTVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHTGLNTEELERIIELL"
     gene            10413..11696
                     /locus_tag="RJ272_001782"
     CDS             10413..11696
                     /locus_tag="RJ272_001782"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDV7382816.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKITNAIKKQVDKLEHVILAGFTHEPIIKLSARLCEKV
                     GHDFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(11683..12288)
                     /locus_tag="RJ272_001783"
     CDS             complement(11683..12288)
                     /locus_tag="RJ272_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDV7382817.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(12298..12612)
                     /locus_tag="RJ272_001784"
     CDS             complement(12298..12612)
                     /locus_tag="RJ272_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7382818.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(12615..12953)
                     /locus_tag="RJ272_001785"
     CDS             complement(12615..12953)
                     /locus_tag="RJ272_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7382819.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            13085..13621
                     /locus_tag="RJ272_001786"
     CDS             13085..13621
                     /locus_tag="RJ272_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDV7382820.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            13618..14163
                     /locus_tag="RJ272_001787"
     CDS             13618..14163
                     /locus_tag="RJ272_001787"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDV7382821.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            14165..15223
                     /locus_tag="RJ272_001788"
     CDS             14165..15223
                     /locus_tag="RJ272_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7382822.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLVMYYFFPVIARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            15267..16475
                     /gene="lysA"
                     /locus_tag="RJ272_001789"
     CDS             15267..16475
                     /gene="lysA"
                     /locus_tag="RJ272_001789"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDV7382823.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYVKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            16477..17244
                     /locus_tag="RJ272_001790"
     CDS             16477..17244
                     /locus_tag="RJ272_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HDV7382824.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAALVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            17232..18305
                     /gene="pheA"
                     /locus_tag="RJ272_001791"
     CDS             17232..18305
                     /gene="pheA"
                     /locus_tag="RJ272_001791"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDV7382825.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            18295..19389
                     /locus_tag="RJ272_001792"
     CDS             18295..19389
                     /locus_tag="RJ272_001792"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDV7382826.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKKVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDKKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            19441..21123
                     /gene="fliF"
                     /locus_tag="RJ272_001793"
     CDS             19441..21123
                     /gene="fliF"
                     /locus_tag="RJ272_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HDV7382827.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            21123..22151
                     /gene="fliG"
                     /locus_tag="RJ272_001794"
     CDS             21123..22151
                     /gene="fliG"
                     /locus_tag="RJ272_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HDV7382828.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            22159..22989
                     /gene="fliH"
                     /locus_tag="RJ272_001795"
     CDS             22159..22989
                     /gene="fliH"
                     /locus_tag="RJ272_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HDV7382829.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            22982..24829
                     /locus_tag="RJ272_001796"
     CDS             22982..24829
                     /locus_tag="RJ272_001796"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDV7382830.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNSCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKVLKFYH"
BASE COUNT         8854 a         3477 c         4151 g         8363 t
ORIGIN      
        1 taatacgaaa tttatataat ttaaaaatta aaattttata ctatgaagct ttaaaaaaat
       61 atgttaaaat ccagattttt atcttttgca aggaagacaa tgaaagaaat tcttatcact
      121 aatgacgatg gttatgaaag cgaaggactt aaaaaactca ttaagatgtt aacaaaagaa
      181 tttaaagcca agatcaccat agtagctcct gctagtgaaa aatcagcttg ttcgcactct
      241 ataaccctaa ccaaaccttt gcgttttgtt aaagtgggaa aaagatttta caaacttgat
      301 gatggcactc cagcagattg tgtttatctt gctttgcatg ctttatacaa aaagcgtttg
      361 cctgatcttg taataagtgg gattaataaa ggtgctaatg taggcgagga tattacctac
      421 tcaggaactt gcgcaggagc tatggaggcg gttttacaag gaattcctgc tatcgctctt
      481 tctcaatttt ataaaaaaag cgaaaaagaa ctagactata aaaatgcttt acaaattacc
      541 aaaaaaatca ttcaaaatat ttttgataaa ggttttcctt tggaaaaaaa agaattttta
      601 aatatcaatt ttcctgcaaa atcaaaaatc aaaggcatta aaatttgtaa agcaggcaaa
      661 agggtttata attttgaagc ccattcaaat gtcaatccac gaggagtgga gtactattgg
      721 cttgcagcgg cgaatttaga ctttgaagat gagaaaaata gcgatattgc cttgcttaaa
      781 aaaggctacg ctacaataac acctataatg ctggatctta cagcttatga aagaatgaaa
      841 aaagttaaaa aatggttaaa ggcaaatgat gaatgataga tttacacgta taaaatggct
      901 agttggagaa gaaaaatttc aaaaaatttc acaaacaaaa gttttggttt gcggacttgg
      961 tggagtgggt ggaatttgcg ttgatgcgct ttatcgtagt ggttttaaaa accttacttt
     1021 aatcgatgcg gataaatttg aaattaccaa tcaaaatcgc caaattcata gcgaaaatat
     1081 aggcgaagaa aaggctaaag tatttgaaag aatttataag gttaaaggta tagtcagtaa
     1141 aatcgatgaa aattttttaa aaaattttga tttaagcgag tttgatctta tcatagatgc
     1201 cattgatgat attcctgcaa aagtagcttt ggctcatctt atagatttta aaaaacaaat
     1261 ttttatctcc tcaacaggtg gagctagaaa gcttgatcca acacgcatta aaactacaag
     1321 tatttttaaa actcacggcg atgctttagc gaaaaaattt cgttatgagc ttagaaaatc
     1381 aggctttaag ggaaattttg atgtggtgtt ttctgatgaa gaagctcatt gtaaagacct
     1441 tggttcattt atgggtgtaa cagcttcttt tggacttgct ttagcttctt tggctttaag
     1501 gaaagtactt gataagaaaa gctgatatta aagatttaaa tgcttgtttg tcgctttttg
     1561 agcaaagcgt aaaaacactt tgtgctaagg attatacaaa agatcaaatt tgtgcttgga
     1621 ttaaaattga tagacaacaa tgggaagaaa aatttaaata tgatgagatc tttgtctatg
     1681 aaaaaagagg aaaaatcgca agttttataa gtgttaaaca agagcagaaa ttgcttgatt
     1741 tgctttttac tcatcctgat tttgttagac aaggtttagc acaaaattta cttgatttta
     1801 ttttaaaaac ttatttgcat aatgaaattt acactttcgc atccttaagt gctaaagatt
     1861 ttttcttaaa aaatggtttt gaacttataa gggaaaacaa ggttatcaaa gagggacaaa
     1921 atttaaaaaa atttttaatg aaaaaagatg tggtttataa aaactagaag ttaagataag
     1981 caaaaataat ggattaaaag atagaaaaaa ttacaaaaat agctagatgt tagaaaatag
     2041 ctccgtgttt ttcataattt gttatttttg taacagtgtt attttcatcc acaaaaacaa
     2101 cttttggttt aaatgttttt gcttcttctt cattaaaatc agcataagac atgatgatca
     2161 ccttatctcc cacttctgca agacgagccg cagcaccatt taagcataca actccttctt
     2221 cttgcgtggc tatggtatag gtttcaaatc tagcgccatt attgacattg actacttgga
     2281 ctttttcgta ttctaaaatt ccactcgctt gcaataattt ttcatctata cttatacttc
     2341 ctatataatc aagcctagct tctgttacgc ttgcgcgatg tatttttgat ttgagtaaag
     2401 tgatattcat tttaatcctt gtactaaaaa attatcaatg agtcttgttt ttccaacaaa
     2461 agcagccacc gctcctaaaa cattatcagt gatattttcg atattttcca tggtgttaaa
     2521 atcgactaat tctatataat cgattttgat tagtttttct ttttctaaaa tatctttcat
     2581 agcttggatg atcttagaag tatttttttc tccctctcgg actaattttt cagccaaaaa
     2641 aatgctttga gatatagcta gtgacgcttt tctttcttct ttgctaagat atacatttct
     2701 agagctttta gctaagccat cttcttctct aatgatagga caaatttgaa tttttaaatc
     2761 aaaatttaaa tcatcaacca tatgcctaac gactacgcat tgctgcgcgt ctttttgccc
     2821 catatagact atatcagggt ttaggatatt aaaaaattta gttaaaaccg tgcaaacgcc
     2881 tctaaaatgc cccggtcttt tagccccgca aagtttatca gtgatcgtat tcatatctac
     2941 ataggtgcta aaattcttaa gatacatttg agttgcatcg gggataaaaa ccatatcaac
     3001 gccattatct tgacacattt taatgtcgcg ttctaaatct cttggataac tagaaaaatc
     3061 ttcattaggc ccaaattgca taggatttac aaagatactt actataacct tatcttgtgt
     3121 tttggcatgt ttgactaaac ttaaatgtcc atcgtgtaaa aaacccatgg ttggaacata
     3181 gcctatacta agttgatgtg atttccaatc ttttacaatt tgttttgctt ctttgacaga
     3241 agtaatgact tgcatatttg tatccttagt ataatttatc taataattca tcatctaaat
     3301 aatcaaagct gtgctcttgg gaaggaaaaa taccgctttt aacttcatct ctatattttt
     3361 caactcctac ttgaggatca attttatcaa aatgctttac aaattttgct ttaaaatctt
     3421 tatttaaacc caaaagatcg tgataaacta aaacttgtcc atcgcagtat ttgcctgaac
     3481 ctatgccgat tgttggaatt tctaaaatag agcttatttt ttgtgctagt tttacaggca
     3541 cacattctaa aaccaacata caagcacccg catcttgcac agcttttgca tcatctataa
     3601 ttttttgggc cgattgtaaa tctttacctt gaaccctata gccacctagc atatttacag
     3661 cttgtggggt tagtcctagg tgagcaacga cgggtattcc tgattgggaa atcaatttaa
     3721 tcttacttgc gatttctata cccccttcca cttttacccc atttgcgtgg ctttctttga
     3781 taaatcttga ggcatttaag atagcgtcac gatctgaact ttgataagac ataaaaggca
     3841 tatcagcaag tacgaaagac tttttagctc cgcgagaaac agctttggta aaaatcaaca
     3901 tttcatccat agtaacactt aaagtatctt gcatgccaag cactgtcata gctaatgaat
     3961 ctccaaccaa tataatatct atatcgctat tgtctaaaat tcttgcacta tgataatcat
     4021 acgcacttac catggttatt ttttcatttt tggccttttt ttccaaaaaa ctaagaatac
     4081 tttttctcat ttaaaatacc tcgtttagct ataaaatagt aagcaaaaaa ctagcatata
     4141 aattttcata aatagtaaat aaacgataaa acaaaatata tttaattaat ggattgtttt
     4201 aatggttaca attttagaaa atttcagttc atgttaaagg atatttaaag aaaataaagc
     4261 tttaaaaagt attttgttta aaattattta aatagaaaga tattttatga aaaaaataac
     4321 tttattttta cttttcttaa atttagtgtt tgggcaagat aagatattaa ataattggtt
     4381 taaagagtat aatacaagcg gcacttttgt tttttatgat ggaaaaactt gggcgagtaa
     4441 cgacttttta agggctatgg agactttctc tcccgcttcc acttttaaaa tttttaatgc
     4501 tctaattgca cttgatagtg gtgtgataaa aactaaaaaa gaaatttttt atcactatag
     4561 aggtgaaaaa gtatttttat cttcttgggc gcaagatatg aatttaagtt cagctataaa
     4621 atattctaat gttcttgctt ttaaagaagt ggcaagaaga attggtatca aaactatgca
     4681 agaatattta aacaagcttc attatggtaa tgctaaaatt tccaagatcg atactttttg
     4741 gcttgacaac tcactaaaaa taagcgctaa agaacaagca attttgcttt ttagactttc
     4801 acaaaatagc ttaccttttt ctcaagaagc aatgaatagt gttaaggaaa tgatttattt
     4861 aaaaaatatg gaaaatttag agctttttgg aaaaacaggt tttaatgatg agcaaaaaat
     4921 tgcttggatt gtaggttttg tgtatttaaa agatgaaaat aaatataagg ctttcgcgct
     4981 aaatttagat attgataaat ttgaagattt atataaaaga gaaaaaattt tagaaaaata
     5041 tttagatgaa cttgtaaaaa aaagttaaaa atgatggcta gtgagtattt cgtaaaatgc
     5101 aaaaatactt aattgtatga tttgcgtaca cttaaagtac tcattaaaaa attaaatttt
     5161 tgctcttatt tatcaagttt tcctacgatg atagggttaa aggcttttat ggatagcaaa
     5221 agcgtatcgc cgatttttac atcttgataa gcttttagaa attcctcttc actaagagtg
     5281 attttaataa tatcttgatt taaaagcaag gttaaaacca ctaaaatatc acttttttta
     5341 atttctagca aagttgcact taagcgtaat tttgcgctga tatttgaatg agtaaaaaat
     5401 tcatttttag gaaaatcttt aataattttt ccgtttttaa gctctaaaat tctatgactt
     5461 aacttataaa tttcagctag atcatgactt accaataaag tacttatttt aaaatactct
     5521 aaaatcttgg ttaattcatc ttgtaaattg gcacgcattt taaaatccaa agcactcaaa
     5581 ggttcatcta aaagcaagat ttttggttct cttgctaaag ctcttgctaa agctactctt
     5641 tgtgcctgcc ccccacttaa atgtttagga taaattttag ctaaattttc aagcttcatt
     5701 aaggctaaaa gctcgctaac ctttgcttta gaactagcgg cataggcgat gttttctttt
     5761 atattcatat ttggaaaaag cgcataatct tgaaaaacaa aaccaatttt tcttttttgt
     5821 aaagctaaac taaaattttt tgaagaatca aaccaaagtt cattatctac ttctatacgc
     5881 cccaatttag gctttataag tcccgctatg atttttaaaa gagtggtttt tcctgctcca
     5941 ctttcgccaa aaagtgcagt aatttttcct gattctatat cttttttaaa atttaaatcc
     6001 agtcttcctt tagcggtatt cataggatga ttgatatcaa ttcttatcat tgaaaactca
     6061 tttttttatt gataaaataa agactaaaaa gtactaaaaa agaaaaaata aacaatataa
     6121 aagcatattg atgggctaag ctatagttta agatttcaag ttcatcataa atagctatac
     6181 tagccactaa agtttcacct tgtttatgtc ctcctatcat catcacgact ccaaattcac
     6241 ccacagtatg ggcaaaactc atcgcacaag cactaaaaat tcctgcttta gaattaggta
     6301 aaatcactct aaaaagagta taaattttac ttttacctaa actataagaa gcatcgagca
     6361 aatttggatt gatcgatgaa aaggcacttt gcaaaggatt taccataaaa ggcaaagaaa
     6421 aaatcaaaga agcaaaaaca agaccttcaa aactaaaaac caaagaaaga ttaaaatatt
     6481 cttttaaaac ttgccctaaa aaactattag ccgaaaaagt tacaagcaaa taaaatccca
     6541 aaacactagg aggtaaaatc aaaggcaagg aaataaagct ttgaaggatt gttttaaaag
     6601 gaaaacgcac aaaacttaac aaataagcta aaaaaacacc gataaaaaaa aggataaaag
     6661 tcgtgataaa agcaagttta aaagtaagat aaagggtttg taaaaaagct ggatcaagca
     6721 ctatgactcc ttaatacaat atcatttgct tttacaaaac aaagccattc ttgattttca
     6781 caaatttcaa gttctaaagc tttttctttg gtgataatac tagaaagttc attaccttta
     6841 aaatcaaaaa atacctgata taaaagtttg ccttttttaa tttttgtaat tttagctaaa
     6901 aaagaatttt caacacttaa aagagttttg cttgcgctaa aacaaagctc atgctcttta
     6961 aaaagaagtt ctacactcac accaattttt aaattttcta aagattttaa ttcaagcatt
     7021 aaaacactaa aaatcacttc tttagaaagt attttaacaa taactatatc ctcttgattt
     7081 aaaagctcac aaatttgtcc ttttataagg ttcatggtgt gctaaatccg tattttttaa
     7141 aaatttcttt tgcttttgaa gagccaataa attcgttaaa ttcaaaggct aattttttat
     7201 ccttagcgta ttttgtgatg acataacttt gctctaaagg gctaaaatac tttgcatcaa
     7261 ttataacagc cttaccctta ggatgattga tagaagaaac taaagaataa gccactatag
     7321 ctatatctga atttttgcta tctacatgta aaacaggcac tgagatattt tcgcctaaaa
     7381 cgattttatc cttaagaagc tcatttaaac ccaaattttc aagcacttct ttagctgcta
     7441 ctccataagg agctacttta ggattggcta tgcttagatg cgtgattttg tttgcctttt
     7501 cttttaaatt ttcaacgcct ccttggagta aattttcatc caagctatac aaagccaaaa
     7561 ctcccaaaac ataaactttt ggttttatta aagcattttt atcatcataa atagccttag
     7621 catatttagt atccgctgaa aaaaagagat caaattctct tccttgtttt aaaagctcat
     7681 aatattttcc agaagcacca aaaaccaatt ctattttatc ttctggatgt gttttcaaaa
     7741 actcatcttt aacttcactc atcgcctttg aagctgaaga agctacaaaa atacttaaat
     7801 tttgcgcatt tagatgtaag gtaaaaaaca aaatcccaaa aaatactata aactttttca
     7861 tttagctttc cttgtgtaaa aatttaattt ttggattata acacaaaaaa atcattttat
     7921 atcatttttg cataaaataa atacaggatg ataagtgagt ttgttttgaa atttttcttc
     7981 aaaatctttt aaaaaacatt tatttaaagg ataaaaacct aaagaattta ccccgcttaa
     8041 ttttaaatgt ctaaaaactt ctaaagcatt atcaaagctt aattctacga gttcttgagt
     8101 gatttttacc tcattaaaat agactttaaa aatttgttct aattcattta agctaaaata
     8161 atttaaacca aaccccgtac tttgtttgat ttcttttaaa ttttgttttg caaaagtaga
     8221 aagaagtaaa attccatttt gatttagcat atctctaaga cttagtataa tgcgttttaa
     8281 atcaagccat tgcaaagttg catttgaaac aataagatca aatttctctt tacttaaatc
     8341 ttgttttgca atttcattca tatcaaaaat taaaatatta gaattttctt taaagtttaa
     8401 aatatcgttt tttaaatact tattaaaagt aatgaaattt tgaagttttt tgctaaattc
     8461 acccctacca caaccaaatt caaacacttt ttcaaaatgt gaaattttta aatcttttaa
     8521 aatttcacaa agttttaaac ccatgaaatc ttgcactttt gcatgttttt cataatcttt
     8581 tgcttttaaa aaattcaaag ctcatcccaa gttttaaaat gaaaaaaagc aaaatgcggt
     8641 tcatctaaaa aaatcaaatt tttaaaacta tttttcaagg catttggtgg aaaaatttca
     8701 tcttctttac ttgaataaac cttatcccaa agcaaatttt cttcttgttt tgttaaagca
     8761 aagtcaaaaa gtttttcaag ctctattttc aaagattttt catctttaaa aataaaatct
     8821 ttggctaagc ttttgcgttc tttaaataaa gcctctttaa aatgttctaa tttaaaattt
     8881 tgcagggttt ttttaaaaat tgtaggatga attccttttg atttatctat gcctaaattt
     8941 gtaccattta tggctatttt ttgcttaaaa ttaagctctt ttaaaagtct atttgccaca
     9001 caaaccccta tagaaaaagc gattaaaaaa agctcatcaa aagctttgaa attaaaattt
     9061 aaatcaaaat tttcataatc ataaaataaa atcacatttt tatcgctttt taaatgcgaa
     9121 aaatgactag gatatgaagc aaaccctcca aataccacta taagtttttt tgaatcagga
     9181 tttttgcata aaaattcata tttcataaaa gctctattat cctttcaagt tcttctgtgt
     9241 taagtcctgt gtgtaaagaa aaacgaattc tagctgtatt ttttggcaca gtaggttctt
     9301 taatcgcagg agcaaaaaaa ccagcttttt gaagtttttg tgaaatttct aaggcttttt
     9361 tattttcacc taaaagcaag caaataatat aagcatcacc taaaacagtg tgattttttt
     9421 cttgcaattt acttttaaaa aaagtactta aaagttctaa tttttctctt tctttcttaa
     9481 aataaggcat ttttttaaaa ataaattgtg tccaagctac attaataggt ggcaaagctg
     9541 tagaataaat aaaagctcta gctttgttga tgaaaaattt tttatatttt tcatcacata
     9601 ttatacaagc acccatggaa gcaatggctt ttccaaaggt aaaaaccaaa aaatccactt
     9661 cattttctaa ggctagtttt ttaacaagcc ccaaaccctc tttatcaaaa caacccacgc
     9721 tgtgtgcttc gtctatataa agcttgattt tatcataacg tcttttaagc tcacacaaag
     9781 ttttaaaatc gctaaaatct ccatccatac taaacaaagc ttcgcttaaa acgatgatat
     9841 tttcataatt ttcataatgt ttttggatta aactctctaa atgattcata tttttgtgat
     9901 gaaaacgaaa aaaatcagcc tcgccaagtc ttaagccatc aatcatactt gcatgaataa
     9961 atttatcggc taaaaaaagc gtcttagaaa cgctagaaag tgctgctata caagagatat
    10021 ttagatgata accactatta aaatgtaaaa tttccttatc tttaaattta gtctttaaaa
    10081 aactttctaa ttcttcataa atttcaaaat ttccactcaa acttcttgaa ctcgaacttg
    10141 aaaaaaacaa atcttgctct tttagggtgt ttaaaaactc agcttttaac tctttagaag
    10201 acgccaaata aagataatca tttcctgcta aatttaaaag tttttgatct tgtttataaa
    10261 caaatttatt ttcatgtttt aaaggcgtta gagttcttag attgtgattt tgctctagat
    10321 cttgcaaaat tttttcaagc ttcatttttt tcctgtaaat ttaaaaattt aaagtattat
    10381 tttgccaaaa tatttttaaa aaagaagtta taatgcaaaa tcaaatctta aaaaatctcg
    10441 atttaaaaca catttggcac ccttgcacac aaatgaaaga tcacgaaact ctacctttaa
    10501 ttcctataaa aaaagcaaaa ggtgtatggc tttatgattt tgatgataaa gcttatatgg
    10561 attgtgtgag ttcttggtgg gtcaatcttt ttggtcattg taatgaaaaa atcacaaatg
    10621 ccattaaaaa acaagttgat aagctagagc atgtgatctt agcaggcttt acacatgagc
    10681 ccatcatcaa gctttctgcg agactttgtg aaaaagtggg gcatgatttt aataaatgtt
    10741 tttatgcgga taatggctca agtgccattg aagtagcact taagatgagt tttcattatc
    10801 atttaaataa gggagtgaaa aaaagtaaat ttttatcttt aagcaattct tatcatggtg
    10861 aaaccttagg agccttaagt gtgggcgatg ttgcacttta taaagatact tacaaagcct
    10921 tgcttttaga gtgtttaagc acgcctgtgc cacaaggcaa agactacact aaagagcttg
    10981 aaattttaaa agatatttta gaaaaaaatg caagtgaaat ttgtgctttt atacttgaac
    11041 ccttggtgca atgtgcagga aatatgcata tgtatgaagc agggtttatt gatgaggcca
    11101 taaagctttg ccataaattt ggagtgcaag tgatttttga tgaaattgca gtgggctttg
    11161 gacgcacagg aactttgttt gccttacatc aatgcaaaca aagccccgat tttatctgcc
    11221 tttcaaaagg gataacgggt ggatttatgc cactttctgt agtgcttaca agagatgaaa
    11281 tttataatgc tttttatgat acttatgaaa gccaaaaggc ttttttacat tctcatagct
    11341 atacgggaaa taccttagct tgcgcggcag caaatgcggt tttagatatc tttgaggatg
    11401 aaaatatttt agtaaaaaat caaattttaa gcgagtttat caaaaaagaa ttttcaagac
    11461 ttgaaaaatt tgactttttg ggtaatttta gaacttgcgg gatgatcagt gcttttgata
    11521 ttttaagcac caagtataaa cgcgtaggac tttttgtatt tcaaaaagcc ttagaaaaag
    11581 gtttgctttt aagaccttta gcaaatacga tttattttat gcctccttac atcatcacaa
    11641 aagaacaaat cgtttatgta ctagagagtt tagagcagat ttttaaggaa ttttaagttg
    11701 taaaatttct tgcatttgct ctttaaaatc tttatttaaa atgctatttt catcaaaaaa
    11761 atcaagattg attataggaa tttttgcata attttttata aaatcatctt gtaagatatc
    11821 ttttttaccc atcattacaa gggctaaaag attgatattt ctttgcttta aagcttcaat
    11881 gctaagcaag atatgattaa tgcttccaag atagtatttt gctaccaaaa tcgtagggtg
    11941 tttgaaaata ttcacaaaat caatcatagt gtaattttca tccataggag aaaaaagccc
    12001 acccgcaagc tcaataagta ggtttttgct ttttggtaaa atgatatcta aggctttata
    12061 atcaagcttt tctttgattt ttccaagatg aggagaagct ggagtttgca aaaaaatacc
    12121 ttctttaaaa atctttgttt ttgggctaaa ttttgcaata aactcgctat ctgttggagt
    12181 tcctgcttga atgagtttaa aataatcata gttaaaattc gcacaaaaag ctgcgctaaa
    12241 atgtgttttt cctacatcag tatgtattcc acttacataa atttgcacaa aaaatcctca
    12301 agaaagaaat tttaaacccg ctgtacaagt aataatcaca gcgattaaaa aaagtttcaa
    12361 aaaactttta ctttctttat aaaaaagcac tcctatcatt accccaccag cggttccagc
    12421 tcctgtccat atagcataag caacgctcat agcgatattt tgcatactta agcttaaaaa
    12481 agtaaaagaa aatccaaaac acactatcaa agctaaaagg taaagcttgt ttttagtgct
    12541 tacaagttct ttcatgatca ccacgccaaa aatttcacag gcagtagcta aaaacaaata
    12601 aaaccattcc ataactaagc ttccttgctt acccatttaa gggctataat gcttaaaagt
    12661 aaaatcgcta taagcacaag tttaattata gaaacagcct cattaaaaat aaacatttca
    12721 tttaaaacca ctcctatagt gccaatgcct acaaaaacac tataagtaat gcttacttca
    12781 agtctttcac aagcttttaa aaaacaagta aaagaaatac aaaccccaat ggctgttaaa
    12841 atatagtgcc aaatttctgt agaatactta agtccactta cccaaaaaca ttctataatc
    12901 ccgcctaaga ttattaaaaa ccaagctata ttgatattga atttttcatt cacatgaagc
    12961 cttaaattaa cataatttat aaaacaaatt atatcttaaa gaaattaaaa gaagctataa
    13021 atttactttt ccataagcca aaattagata taatcaaagc tcatttttta agaaaggaca
    13081 aaagatgtta gaaggcatcg ttagagagag tatcggtaga aaagctgcta aagctttaaa
    13141 aagagatggt tatctaatcg caaacatcta tggaaaagga ttagaaaaca tcaatgccgc
    13201 ttttaaagta aatgagttta ttaaggaagt tcgtaaaaaa actactttaa tttttgatgt
    13261 aaaagtaggt tctcaaactt taagcgttgt agttgtagat tatcaaaaag atcctgtaac
    13321 tgcagaactt aaacatgtgg atttaaaagt tgcacaaaaa ggtgtgattt ctaaatacat
    13381 ggttccagtt aaaatcacag gaacagctat aggtcttaaa aataaaggtg ttttaatcca
    13441 atcaaaaaga agattaaaag taaaatgtgc agctgaaaat ttaccaaatt tcttcgaact
    13501 tgatgtaagt aaacttgatg tgggtgatgc tttacttgtt cgtgatattg tagttcctgc
    13561 gggagtaact atgattgatg ctgatagagt agcggttgta ggtgtagaaa aagctagatg
    13621 attttagtcg tagggcttgg caatataggc gtagagtatg aaaatacccg tcataatgtc
    13681 ggttttatgc taattgactt acttttaaaa gaaagcaatt ttacaaatct tacaaactct
    13741 aaatttaaag gagagctttt taaaataggt tcttctttac ttcttcttaa acctagtact
    13801 tatatgaata attcaggact tagcgtaaaa gcagtgaatg atttttataa atgcgaaaga
    13861 atgatagtta tccatgatga tatagatata aatttaggag ccttgcgctt taaaaaaggc
    13921 ggttcaagtg gtggacataa tgggcttaaa agcatagata ctttatgtgg aaatgactat
    13981 gaaagagtgc gtataggagt gggaaagggt gaaaatgtga tttcccatgt tttaggtaaa
    14041 tttaaatccg aagaagaaat aactttaagc aaagttttag agcatacaaa aaaagctttg
    14101 cttgagctta ttgaaaatga tgatttgtct gctatatcat ccaaatacag cctaaaggct
    14161 taagatgtgg atattttttc gttttatttc agggatttat ttaaaaaatt tttttattat
    14221 atttttttct ttacttggtt tttattgcgg tattgattta ctcttaaatt ttaaagatct
    14281 accaaaagcc gcaaatcttg atttgcttta tgttatgttt ttatcttttt cggcagtgcc
    14341 ttatgtatta cccatttctt tgatttttgc tttggtagtt tctttgattt ctatgatcag
    14401 agcaaatgaa tttgtaagtc tttatgcgtt aggactgagt agaaattatg ttattttatt
    14461 tcctttttta tgggctttat ttttttgttg tatttatata ggattgaatt ttacttcttt
    14521 tgcttatgca aatgattata agagaaatat tttaaaaaat ggcactatta tgaatcaaag
    14581 tggagaagtg tttttgaaat ttaacaataa ttttgtttat atttcaaaga taaacaatgg
    14641 acaaaatagt gctcaaaata taaaaatttt taatattaat gatttaaatt taagctcttt
    14701 tgtaagtgct aaaaatgccc attttgaagg tgaaagctgg attttgcgag atggtaatat
    14761 tacattatta cctaaaaatt atgaacttgc taatgatggt ttaaagatac aagatttctc
    14821 cgagcttaaa tcacttgagg gttttaaacc aaagattata gaaggggttg ctagtaatag
    14881 tgattattca atatctgatg cacttgaaag ttttgagctt tttaaggcac aaaatgtcaa
    14941 tacagatact cttaaaatca atctttataa atttgttttt actccttttt ttgcaccatt
    15001 tttaatgctt gttatgtatt atttttttcc tgtaatagca agatttttta atcttgctat
    15061 tgtaactttt gtagcttttg tagtgacttt gatgatttgg ggagtcttgt ttttgcttac
    15121 tagattaagc gaaaatagtg tgattgcaag tgaaattggc attgtagtgc ctattataat
    15181 tttgggttgt ttaagtgctt atatgtatta taagcatcga taaattaagc tttgtgtagt
    15241 aaaattataa aaattaaagg ttaaatatgg attataaaca attaaaacaa gaatttaata
    15301 ccccttttta tatttacaat tttgatttca taaaagagcg ttttttaaat ctcaaagagg
    15361 cttttaaggc tagaaaatct caaatttttt acgctgtaaa agccaattca aatttaagtt
    15421 tgttgcaaat gcttgcaaat ttagatagtg gatttgattg tgtgagtata ggcgaggtaa
    15481 agcgtgcctt aaaagcagga gcaaaagctt ataagattat ttttagtgga gtaggaaaaa
    15541 ccaaagaaga gttaagacaa gctttagaat atgatatttt atatattaac cttgaaagcg
    15601 aagctgaaat gatgctttta gaaagtgtgg ctaaagaact taatctaaag gcaagaatca
    15661 gcattcgtgt taatccaaat gttgatgcaa aaactcatcc ttatatttct acaggattaa
    15721 atgaaaataa atttggtgtc gaaattgata tagcaagaaa aatgtatctt tatgtaaaaa
    15781 attcatcttt tttagagccc gttggagtgc attttcatat aggttcgcaa cttttagata
    15841 tttctcccat tcatgaagca gcaggcatcg ttgcaaaact tgtaagagag ttaaaagcct
    15901 tgcaaatcga tcttaaattt tttgatatag gcggtggttt gggtgtggct tatgaaaaag
    15961 atgagtgtga atctgatctt tatgattatg cacaaggtat attagcacaa cttcatgggc
    16021 ttgatttaac tataggaatg gagcctggaa ggtatttagt tgctaaaagt ggagaatttg
    16081 tttgttcagt actttatgaa aaacaaaata aaaccaagcg ttttgttgta gtagatggag
    16141 cgatgaatga tcttatacgc ccaagtttat acgaggctta tcatgaaata atcttacctt
    16201 ataatcaagc ccaagagagt ttatgtgatg ttgtaggtgg aatttgtgag agtggagact
    16261 tttttgctaa agcaaggtct ttgcctagca ctcaaagtgg tgatataatg gttattaaaa
    16321 atactggagc ttatggtttt agcatgagca gtaattacaa tactcgtaat aaagtttgcg
    16381 aattagccct tgaagaagga caggtaagat tgatccgtca aagagaaaat tttgaagatc
    16441 aaatcgcttt agaagagaaa tttttaaagg cttaaaatgt tttttttaga tgttcaaggg
    16501 actttaattt ctgatcatga taaatcttta atccatggtg ctaaagaact gatcgatttt
    16561 ttaaatgcaa aaaatcttcc ttatcttatc atcactaaca atacaaaaaa acttgatttt
    16621 ttagaaaaat tacagcaaaa aggattggct ataaaagaaa atgcttatat tgatcctttc
    16681 agcgttttaa aacacctttt aagaccttgt aaagttgcgg cttttggtgc agatgagttt
    16741 gtaaaaagtc ttgaaaatct tggttttgag ctcgattttg taaatcctag tgctgcgctt
    16801 gtggctagtt atgatgattt taaatttaaa gattttgcca ctatgataga attggctaga
    16861 agagaagtta gatttatagc tatgcacgaa actagtattt ataaaaaaga tggtaggcct
    16921 tatcctggtg taggtagcat tatggctatg cttaaaaatg ctattgattt tgaatacgag
    16981 gttgtgggta agcctagcat tgctttttat aaagaagctt taaatttaat aagaagacaa
    17041 aattcaaaaa tcgattttga agatattaaa atcattagtg atgattttag gggtgacttg
    17101 cttaaggcaa aagaacttgg catgaaaacc ttgctagttt taagcggcaa gataagcgac
    17161 acaaaagggc ttgatacgga tttgcttgat ggagtttatc ctagtgtttt tgagttttta
    17221 aaggatctaa aatgccaaat ttagaagaat ttagaaataa aatcgatgcg gttgatgata
    17281 aaattttaga tcttttaaat gaaagaatga cttatgttaa aagtataggt gagcttaagc
    17341 aaagtagtgg gggaagtatt tatcgtcctg agcgtgaaag agccattatc aatcgtttaa
    17401 aaaatgcaaa tttaggactt ttagatcaaa atgccataga ggcaatttat caagaaattt
    17461 ttgcagtttc aagaaattta gaaatgcctc aaactatagc ttatttaggg cctgaaggaa
    17521 cttatacaca tcaagcagca agaagtcgtt ttggtgcgat gagtcgttat atagccttgg
    17581 ccaatatcga agatgttttt aaagagttaa gcaacaaaga agcaaaatac ggtgttgtac
    17641 ctatagaaaa taataccgaa ggtgcagtgg gcattacttt agattgtcta ggtaagtata
    17701 atgagcttaa aatttttggc gaaatttata tggatattca tcattctttt gtaggaatta
    17761 atgaaaattt aaaagaaatc aaacgcattt attcgcatcc gcaaggttat aatcaatgtc
    17821 gtaaattttt agaaagtcat gaacttagtg ctatagaatt tgttccttca aaatctacag
    17881 ctaatgcagc ttacctagct tcgcaagata aatatgcggc agcaatttgt tctagaatag
    17941 cggctaagct ttataatgtg cctgtacttt ttgataaaat agaagataat gcagccaata
    18001 aaacaagatt tttaatttta agcgatatta aaaatcctaa aatgccaaat tgtaaaactt
    18061 ctattttagc acacacagca cataaacctg gggggcttag ctttttatta gagcagttta
    18121 aaaaagaaaa tatcaatctt actaagcttg aatctcgccc tgtaaaatca aaagaatttt
    18181 tacacagttt ttatatagat tttgaagggc atattgatga tgaaaatgta aaaaaagcct
    18241 taaaagatat acaagagatt gtttggcttg gatcttattt atcaggagaa aaagatgaaa
    18301 tttaatgaat ttttaaatca tttaagcaat tatgaacctg gaaaagatat agaagttatt
    18361 gctaaagaat atggcgttaa aaaagtgata aaattagcaa gcaatgaaaa tccttttggc
    18421 acgccaccaa aagctataga atgtttaaga caaaatgcaa ataaagccca tctttaccct
    18481 gatgatagta tgatagaact taaaagcaca ttggctcaaa aatacaaagt tcaaaatgaa
    18541 aatatcatta tcggtgcagg tagtgatcaa gtgattgaat ttgctataca tgctaagtta
    18601 aattctaaaa atgctttttt gcaagctgga gttacctttg ctatgtatga aatttatgcc
    18661 aaacaatgtg gtgcaaagtg ttataaaact caaagtatta ctcataattt agatgagttt
    18721 aaaaaacttt atgaaacgca caaagatgaa attaaactta tttttttatg cttaccaaac
    18781 aatcctttag gcgagtgttt ggatgcaagt gaggcgaccg agtttattaa aggtgtaaat
    18841 gaggattgtt tagttgtgat tgatgcagct tataatgaat ttgcaagttt taaagatagc
    18901 aaaaaacatt taaaaccttg cgaattgatt aaagaatttg acaatgtact ttatttaggg
    18961 actttttcta agctttatgg attaggaggt ttacgcattg gttatggtat agctaatgct
    19021 aatattatta gtgcatttta caagcttcgt gcgcctttta atgtgagtaa tcttgcttta
    19081 aaagcagcag ttgcagcaat aaatgatgat gaatttgcta aaaaaacttt agagaataat
    19141 ttttctcaaa tggaacttta taaagaattt gctaaaaaac ataatatcaa aatcattgat
    19201 agttatacaa atttcatcac ttattttttt gataaaaaaa atagtacaga tttgtctgaa
    19261 aaattgctta aaaagggtat aataataaga aatttaaaaa gctatggttt aaatgctata
    19321 cgcattacta taggaacatc ttatgaaaat gaaaaatttt ttacagaatt tgataagatt
    19381 ttaagataga taaatcaaat aaaaatatgt aaaattcgct aaactaaggg atgagaatta
    19441 atggatttta aaaatatgct tcatcaaatt gggcaacttt atcaaaattt aactcgcaag
    19501 cagcgtatag tgattgctgc atctattgta gtagtggttg ggtttttggt ttttttagct
    19561 ttatttcgtg gaagtggtag taatgcaaat aatggatatg cagttttagt tgaaaatgta
    19621 agcccaagtt cttctgctgc aattgtagct aaacttgaac aaaataatat tccctataaa
    19681 ttagaaagtg aaaataaaat tttagttcca caagatcagg tttatcgtca aagaatgttt
    19741 attgcaagcg aaggtcttat aaaagatagt cgcgtgggtt ttgaagcttt tgatactcaa
    19801 gcttttggag ctacaaatga agagcaaaag gtaaaatacc aaagagccat agaaggcgaa
    19861 cttgcaagaa ctattgagac tttagaacct attcgtagcg ctgttgtaca catagcattt
    19921 cctaaagata gtgtttttac cgaaaggcaa attccgccta cagcttcagt tgttgttaat
    19981 gttcgcgaag gcttaaagct tactagaaaa caaattgatg gtataaaaaa tattgtttca
    20041 gcggcagttc caaaacttac taaagaaaat gttaagatta gtgatcaaag tggtgtgcct
    20101 ttagatgagc aagaagcata tgaagatgac ttggttcgtg cgcaaattaa atttaaaagt
    20161 gatcaagaaa aagctttaga agataagatt atagaaaatt tagctccttt tgcaggtggc
    20221 atggataaag taaaagtgag tgtaaatata gattttgatt tttccaagca agaatctcaa
    20281 agtgaaattt atgatccaaa tcctatagtg cgtagtgagc aaactttaaa cgaggaaaga
    20341 acaggtagaa aagatccaga aattcagggt gttccaggtg ctgtttctaa tataggtcct
    20401 gttgaaggac ttgacaataa gggtcaaatt gacacttata aaaaaaatca agttactaca
    20461 aataatgaac tttctaaaac tatcacaaat accaaaaaac aatttgcaac agttttacgc
    20521 acttcagcag ctgttactat agatggaaaa tatcaagatg tggttgatga aaatggggat
    20581 gtgaaaagcg aatatgtccc attgactaaa gaagagcttg caagtgttga gagtatagtt
    20641 aaaaatacta ttaattttag cgctactaga ggtgatagtg ttgtggtgca aaatttacca
    20701 tttcatcgtg agtcgattag agttgagagt aaagttaaaa ctttttacaa tcgttttgtt
    20761 gagccattta ttccgccggt taaatacttt attgcagcga ttttactttt tattttttac
    20821 aaaaaagtta ttgctccatt tactcaaaaa atgcttgaag atgtcgcagc acaagaggaa
    20881 atgcagcaag gtccaaatgc tgttttagat gatgctgaag atgctttaga gaaatttaat
    20941 gcagcaagga aaaaagttga agaacaactt ggttttgggg ataacttcaa tgaagattct
    21001 atccagtatg aggttttgct tgaaaaattg cgtggtttgg taagtgataa aggtgaggaa
    21061 attgcagcac ttttgcaaaa cttaattcaa aatgatagcg aatttggcga aaaggatatg
    21121 tgatgataaa gctaagtgaa gaacaaaaaa tggtctatga tgatttatcg atgcctgaga
    21181 aggtagcaat atttcttata caacttggcg aagatgcaac aacttctgtg ttttcacata
    21241 tggaaattga tgtaatcaca gaaatttcac gttatattgc tatggctaaa aatgttgata
    21301 gatctgtagc tactgcagtt ttagaagaat tttacactct gcttcaatca aatcaatata
    21361 ttaaaagtgg tggtttggaa tatgctaaag aaatactttt tcgtactttt ggaccagaga
    21421 ttgcaaataa aattcttgaa aaactcacta aaagtatgga gaataatcaa aattttgctt
    21481 atttggcgca aattaaacca cagcaacttg cagactttat taccaaagag cacccacaaa
    21541 ccatcgctct tattttggca cacatggatt ctattcatgc ggcagaaact ttagagtatt
    21601 ttagcgatga attaagggct gaggtggtta taagaatggc aaatcttggc gatatttctc
    21661 caagtattat taaaagagtt tctgcagtgc tagaaagcaa gcttgaaagt cttacctctt
    21721 ataaggttga agtgggcggc ccaagagcag tagcagaagt gcttaatcgt ttgggtcaaa
    21781 aagcaagcaa atcaaccatt acttatattg aacaaagtga tgaacgctta gcagagacta
    21841 ttaaagagct tatgtttact ttcgatgata tacaaaaact tagcactcag gctataagag
    21901 aaattttaaa agtagccgat aagcgtgatt taatgatagg tttaaaaggt gcaagtgaag
    21961 agttaaagca aaaattctta gccaatatgt ctacgcgtgc aagcgaagct tttcttgaag
    22021 aaatgggttt tttgggtgct gtgcgtgtta aagatgttga agatgcacaa agaaaggttg
    22081 ttgaagtggt gcaaaaactt gcagaacaag gtcttgttca aacaggcgat gcggatgaaa
    22141 tgatagagta ggtgagagat ggttaatcgt agcaatgtaa tttctggtgg ggcttctgat
    22201 cagcatgttg ttgaaggata tcgttttaaa gttatttcag aatttgataa tcatacaggt
    22261 gaaaaaaaac atactcaaac tccagatgaa gaaaatgcta atatatcttt aaatgacgaa
    22321 aaaccagtcg aagaaaatca agtcattgcc tctacgcaag ctgttatgga aactcaaatt
    22381 ccaacatttc aaccaagctt tgttgaagat ttgcttaaaa aaacagatga aatgtcaagc
    22441 aatattatta aacttcaaat gcaaatagaa agccaagaga atgaatttaa taaccgctta
    22501 aattcagaac ttgaaaatgc taaagaaaaa tttgccaaag aaggttatga gaaagcaaaa
    22561 gaagaatttc aaaaagaatt gagtgatttt aaagataagt atttaaaaag tatagccaaa
    22621 ctcgataatg cttgcgaaaa tcttgaaaat ttcatagaaa aaaatgagaa agaattagca
    22681 gatactgcta tagatatcgc taaagaagta atcttaaaag aacttgaact aaattcaagt
    22741 aagatagctt atgctttggc taaagattta atcggcgagc ttaagggtgc tagtgcaatt
    22801 gagcttaagg ttaatgcaga ggattatgag tatttaaaag agcaatttga tcagaatgct
    22861 cacattaaaa taagtcttga tgatgcaatt agcaaaggaa gtgttgttat tataagtgac
    22921 gcaggcaata tagaatccaa tcttaactct cgtctaacta aaattaaaaa aatggtgaat
    22981 aatgagtaaa aaatttgccc atactcaaga agagttagaa aagctaagtt taaaagaatt
    23041 agaaaattta gcagcatcta tgcgtgaaaa aatcatacaa gttgtgagta aaaatggtgg
    23101 gcatttaagt tcaaatttgg gtgctgtaga acttagtata gcaatgcatt tggtttttga
    23161 tgcaaaaaaa gatcctttta tttttgatgt gtcgcatcag tcttatacac acaagctttt
    23221 aagcggaaaa gaagaaatat ttgatacttt aagacaaatc aatggtttaa gtggttatac
    23281 aaaacctagc gagggagatt attttgtagc agggcattct agcacctcta tttctttggc
    23341 agtaggtgct tgtaaggcta ttgctttaaa gggtgaaaag cgtattcctg ttgctttgat
    23401 tggagatggt gctttaagtg cgggtatggc ctatgaggct ttaaatgaat tgggtgattc
    23461 taaatttcct tgcgtaatac ttttaaatga taatgaaatg agtatttcaa aaccaattgg
    23521 agcaatttca aagtatcttt ctcaggctat ggcaacgcag ttttatcaaa gttttaaaaa
    23581 gcgtattgct aaaatgttgg atatattacc tgatagtgct acttatatgg ctaagcgttt
    23641 tgaagagagt tttaaactta ttactcctgg gcttttgttt gaagaattag ggcttgaata
    23701 tatagggcct attgatggac ataatttagg tgaaattatt tctgcattaa aacaagcaaa
    23761 agctatgcaa aagccttgtg tgatacatgc tcaaaccata aagggtaaag gctatgcttt
    23821 agccgaagga aaacatgcta aatggcacgg ggtgggagct tttgatatag atagtggaga
    23881 gagtgttaaa aaaagtgata ctaaaaaatc tgctactgaa attttttcta agaatttgct
    23941 tgatttagcc tcaaaatatg aaaatattgt tggggttacg gcagctatgc caagtggaac
    24001 aggtcttgat aagcttatag aaaaatatcc aaatcgtttt tgggatgtgg ctattgcaga
    24061 acagcatgca gtaacttcta tggccgctat ggcaaaagaa ggatttaaac cttttattgc
    24121 aatatatagc acttttttgc agcgtgctta tgatcaagtg atccatgatt gtgcgattat
    24181 gaatttaaat gtggtttttg ctatggatag ggcagggata gtaggcgaag atggggagac
    24241 gcatcaaggt gtttttgatc ttagtttttt agctcctttg ccaaatttca ctcttttagc
    24301 cccaagagat gaacaaatga tgcaaaatat aatggagtat gcttatttac atcaaggacc
    24361 tattgctttt cgttatccta gagggagttt tattttggat aaagaattta attcttgtga
    24421 gataaaactt ggtaaggcgc aatggcttgt aaaaaatagt agtgaaattg cttttttagg
    24481 ttatggacaa ggtgtggcaa aagcgtggca agttttaaga gccttgcaag aaatgaataa
    24541 taatgctaat ttgattgatt taatttttgc taaaccttta gatgaagagc ttttgtgtga
    24601 gcttgctaaa aaaagtaaaa tttggtttat ttttagtgaa aatgttaaaa ttggcggtat
    24661 agaaagttta attaataatt ttttacaaaa atatgatttg catgtaaaag ttgttagctt
    24721 tgaatatgaa gacaaattta ttgaacatgg aaaaacaagt gaggtggaaa aaaatctaga
    24781 aaaagatgtc aatagtttgt tgacgaaagt tttaaaattt tatcattaaa taataaaaaa
    24841 tatta
//
LOCUS       DAPIWV010000205         4783 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_1415
            SAMN06270795-rid18266303.guided.122, whole genome shotgun sequence.
ACCESSION   DAPIWV010000205 DAPIWV010000000
VERSION     DAPIWV010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270795
            Sequence Read Archive: SRR5209570
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768257.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768257.1
            Genome Coverage       :: 253x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:41:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,762
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 57 of 68
            Pseudo Genes (incomplete)         :: 9 of 68
            Pseudo Genes (internal stop)      :: 16 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4783
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270795-rid18266303.guided.122"
                     /isolate="CI_1415"
                     /isolation_source="Oldman River Watershed"
                     /db_xref="taxon:197"
                     /country="Canada: Oldman River, Alberta"
                     /lat_lon="49.8236 N 113.1587 W"
                     /collection_date="2005-09-28"
                     /collected_by="NML@Lethbridge"
     gene            <1..416
                     /locus_tag="RJ272_001797"
     CDS             <1..416
                     /locus_tag="RJ272_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382831.1"
                     /translation="YETNNLINLNINSINRITNEHNVLTIELEKKQIPKNKKLKIKED
                     FINLKLPEEFKLIETHKELYLHGMEQKNCVYTRRREIEDGLSAIYSLNYEGGVYTLEI
                     FKRKNKFAIKEIKAKYNEFANKEVINFVEKSLKAV"
     gene            435..614
                     /locus_tag="RJ272_001798"
     CDS             435..614
                     /locus_tag="RJ272_001798"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382832.1"
                     /translation="MNTNKITDLHIQISKEDLKILDLLLKANEYSNIVFYCENDEEHF
                     IFTEVKLGNYFCINR"
     gene            973..2892
                     /gene="tet(O)"
                     /locus_tag="RJ272_001799"
     CDS             973..2892
                     /gene="tet(O)"
                     /locus_tag="RJ272_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7382833.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGTRQLIEVIVSKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMYVPTNGELYSSDTACSGDIVILPNDVLQLNSILGNEILLP
                     QRKFIENPLPMIQTTIAVKKSEQREILLGALTEISDCDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTYFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            2944..3117
                     /locus_tag="RJ272_001800"
     CDS             2944..3117
                     /locus_tag="RJ272_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7382834.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            3315..3983
                     /locus_tag="RJ272_001801"
     CDS             3315..3983
                     /locus_tag="RJ272_001801"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382835.1"
                     /translation="MHVPEKGKTFAGEVREETVAWSKDTYQLLKQAEQGKVKSYVQDI
                     ALAVLDCKETATSRETFIRLMNERGYGVDWQDSHKYITYTDLAREQAGEKACKIRDNK
                     LEKYYNMDFGKESMEHEFERNARTAEAEQSKRAASRVKPTEPDRAGKQSAQRSVGDVE
                     RELRGIDEAVKSRTSEGRAEQAERRRAEQEAHQRAEAERRAAEEQQRIASRRYIGRDW
                     EPER"
     gene            4278..4700
                     /locus_tag="RJ272_001802"
     CDS             4278..4700
                     /locus_tag="RJ272_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009247731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7382836.1"
                     /translation="MRTEYKHNPPIPYSLHDMRVKKIIIQDKTIVLEFEDGYEKLTEP
                     FEQVEGNITIEGVDFDCTCVMLQSKWGNYGKFNGEKLELERFIKRYKNYSFEIVDELY
                     GYNQVLYSGYLSILETEDLVQMDISIYFTGKIIYDTKE"
BASE COUNT         1687 a          733 c         1101 g         1262 t
ORIGIN      
        1 gctatgaaac aaataattta attaacctta acattaattc tataaataga ataacaaacg
       61 aacataatgt tttaacgata gaattagaaa aaaaacaaat tccaaaaaat aaaaaactta
      121 aaattaaaga agattttatc aatttaaaac ttccagaaga atttaaacta atagaaacgc
      181 ataaagaact ttacttgcac ggaatggagc aaaaaaattg cgtttataca agaagaagag
      241 aaattgaaga cggcttaagt gccatttata gtttaaatta cgaaggagga gtttatacat
      301 tggaaatttt caaaagaaaa aataaatttg caattaagga aatcaaagca aaatataatg
      361 aatttgcaaa taaagaagtt ataaattttg ttgaaaaaag cctgaaagct gtttaaaaaa
      421 tacaaggagt taaaatgaat acaaacaaaa ttacagattt acacatacaa atttcaaagg
      481 aagacttgaa aattttagat ttactactta aagccaatga gtattctaat attgtttttt
      541 attgcgaaaa cgatgaagaa cattttattt ttacagaagt aaaacttgga aattattttt
      601 gcataaacag atgattagtg gcagggggaa atcctgccgc tttttctgct ttagtttgtc
      661 agcttgacaa ataaagggtt aaggaatata attagattca gtattataca aggagttaat
      721 aaatatgcgg caaggtattc ttaaataaac tgtcaatttg atagtgggaa caaaaagtag
      781 cagtcccgtt tcacttttaa tatggggctt agttttttgt acccagttta agaatacttt
      841 tatcatgtga ttttatatgc ccgaaaacat ataagtgttt tggggctatt ggagttattt
      901 acccagtgat aggagtattt atcactgggt atttttatgc ccttttttgg gtgttgatag
      961 gaggaaaatc acatgaaaat aattaactta ggcattctgg ctcacgttga cgcaggaaag
     1021 acaacattaa cggaaagttt attgtatacc agtggtgcaa ttgcagaact agggagcgta
     1081 gatgaaggca caacaaggac agatacaatg aatttggagc gtcaaagggg aatcactatc
     1141 cagacagcag tgacatcttt tcagtgggag gatgtaaaag tcaacattat agatacgcca
     1201 ggccatatgg attttttggc ggaagtatac cgttctttat ccgtattaga cggagcagta
     1261 ttattagttt ctgcaaagga tggcatacag gcacagaccc gtatactgtt tcatgcacta
     1321 cagataatga agattccgac aatttttttc atcaataaaa ttgaccaaga ggggattgat
     1381 ttgccaatgg tatatcggga aatgaaagca aagctttctt cggaaattat agtgaagcaa
     1441 aaggttgggc agcatcccca tataaatgta acggacaatg acgatatgga acagtgggat
     1501 gcggtaatta tgggaaacga tgaactatta gagaaatata tgtcagggaa accgtttaaa
     1561 atgtcagaac tggaacagga agaaaacagg agattccaaa acggaacgtt atttcccgtt
     1621 tatcacggaa gcgctaaaaa caatctgggg actcggcagc ttatagaagt aattgtcagt
     1681 aaattttatt catcaacgcc tgaaggtcaa tctgaactat gcgggcaggt ttttaagatt
     1741 gaatattcag agaaaaggcg gcgttttgtt tatgtgcgta tatatagcgg aacattgcat
     1801 ttgagggatg ttattagaat atctgaaaaa gagaaaataa aaatcacaga gatgtatgtt
     1861 ccgacaaacg gtgaattata ttcatccgat acagcctgct ctggtgatat tgtaatttta
     1921 ccaaatgatg ttttgcagct aaacagtatt ttggggaacg aaatactgtt gccgcagaga
     1981 aaatttattg aaaatcctct ccctatgatc caaacaacga ttgcagtaaa gaaatctgaa
     2041 cagcgggaaa tattgcttgg ggcacttaca gaaatttcag attgcgaccc tcttttaaaa
     2101 tattatgtgg atactacaac gcatgagatt atactttctt ttttggggaa tgtgcagatg
     2161 gaagtcattt gtgccatcct tgaggaaaaa tatcatgtgg aggcagaaat aaaagagcct
     2221 actgttatat atatggaaag accgcttaga aaagcagaat ataccatcca catagaagtc
     2281 ccgccaaatc ctttctgggc ttctgtcggg ttgtccatag agccgctccc tattggaagc
     2341 ggagtgcagt atgaaagcag agtttcactt ggatatttaa atcaatcgtt ccaaaatgcg
     2401 gttatggagg gggttcttta tggctgcgag caggggctgt atggatggaa agtgacagac
     2461 tgtaaaatct gttttgaata tggattgtat tatagtcctg taagtacccc cgcagacttt
     2521 cggctgcttt cccctatcgt attggagcag gctttaaaaa aagcagggac agaactatta
     2581 gagccatatc tccactttga aatttatgca ccgcaggaat atctctcacg ggcgtatcat
     2641 gatgctccaa ggtattgtgc agatattgta agtactcaga taaagaatga cgaggtcatt
     2701 ctgaaaggag aaatccctgc tagatgtatt caagaataca ggaacgattt aacttatttc
     2761 acaaatgggc agggagtctg cttgacagag ttaaaaggat accagccagc tattggtaaa
     2821 tttatttgcc aaccccgccg cccgaatagc cgtatagata aggttcggca tatgttccac
     2881 aagttagctt aacagcttgc aaaagtcata taaaatgaga tttgaaagga ttagagacta
     2941 attatgatga aatgcgaatg gatattgtgt cctgtttgtg ggagcaaaac ccgtaataaa
     3001 attaggaagg acactgtttt ggagaattat cccctttatt gtccaaaatg cagacaagaa
     3061 agattgatta aagttgacaa cttgaagata actgtcatca aagagccaga cgcttaagac
     3121 gcagagccga tgaaattgtg gaacaattca cgaatcatcg gctctttttg tttcgtattt
     3181 gaaagaacaa actcaccaaa taaaaaaaac gatattcggg tgggttattt tgttataccc
     3241 taaattaccc tctgagtaag cacgacctta aagacttaaa ggaacggtgc aacgagcaga
     3301 gctgggaaca gggcttgcat gtgccggaga aaggaaagac atttgctgga gaagtccggg
     3361 aagaaacggt ggcatggagc aaagacacct accagctttt gaaacaggca gagcagggaa
     3421 aggtcaaaag ctatgtgcag gatattgccc ttgcggtgct ggattgtaag gaaacagcga
     3481 ccagccggga aacctttatc cggctgatga atgaaagagg gtacggggtg gactggcagg
     3541 acagccacaa gtacatcaca tataccgact tagccaggga acaggcagga gaaaaggctt
     3601 gtaaaatcag ggataacaag ctggaaaaat actacaatat ggattttgga aaggagagta
     3661 tggagcatga gtttgagaga aatgcacgaa cagcagaagc agagcagtcc aagagagcag
     3721 cttcaagagt taaaccgaca gagccggaca gagctggaaa acagtctgct caaagaagcg
     3781 ttggcgatgt cgagcgagaa ctgcgaggaa ttgatgaagc agtcaaatca agaacaagtg
     3841 agggcagagc agaacaggca gagagacgca gagcagaaca ggaagctcat cagcgagctg
     3901 aagcagagcg tagagctgct gaagaacagc aacgaattgc ttcaagacgc tatatcgggc
     3961 gagattggga gcctgaaaga tgaggttaag gaaaacaccg tccaagaggt tagaaaggcg
     4021 ttacaggcga atatagaggc tatacagagg gctacaaagc ttcttgagaa gcagtctgat
     4081 acacttacga gcgtgatgaa gcagaagatc cgggagcttg aggaaagtaa gaacagtttt
     4141 tttagatatg agggcttgaa gttgtacctg ttttggggcg gtatggtctg caatatttta
     4201 gtgtttctta tgctgttgta tggtatgatt agtaagtaaa aagaaatcga taaattagaa
     4261 tttgacgggg aggtctcatg aggacagaat ataaacacaa tccgcccatt ccatatagtc
     4321 tgcatgatat gcgggtcaaa aagattataa ttcaagataa aacaatagtc cttgaattcg
     4381 aggacggata tgaaaaactt acagaacctt ttgaacaggt cgagggaaac atcacaatcg
     4441 aaggtgtgga ttttgattgt acctgcgtta tgttgcagag caaatgggga aactatggaa
     4501 aattcaacgg tgagaaatta gaactggaac gctttataaa gagatacaaa aactatagct
     4561 ttgaaattgt agatgaatta tacgggtata atcaagtatt gtattctggt tatttatcta
     4621 tcttagaaac agaagattta gttcaaatgg acatttcaat ttactttacg ggcaaaatta
     4681 tttacgatac aaaagagtaa caaattccag tttgtcggta cgaagaaaaa ggtgcaaaaa
     4741 tgtattgata agattagcgg tcaaggcgag agggagtgag gtg
//
